Query 019545
Match_columns 339
No_of_seqs 67 out of 69
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 03:27:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019545.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019545hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 21.2 40 0.0029 20.1 2.9 18 89-106 2-19 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 13.6 70 0.0051 20.5 2.9 16 89-104 5-20 (37)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 11.6 1.7E+02 0.012 23.4 5.6 44 136-184 46-89 (447)
4 d1v54l_ f.23.6.1 (L:) Mitochon 7.5 2.1E+02 0.015 18.9 3.6 35 178-212 3-41 (46)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 6.3 1.7E+02 0.013 17.8 2.5 21 235-255 3-23 (32)
6 d1v54d_ f.23.1.1 (D:) Mitochon 6.1 1.5E+02 0.011 23.5 2.7 36 84-124 73-108 (144)
7 d2cvza2 c.2.1.6 (A:2-157) Hydr 5.7 1.1E+02 0.0078 22.8 1.5 27 119-155 91-117 (156)
8 d1vi7a1 d.14.1.11 (A:3-137) Hy 5.3 2.7E+02 0.02 21.5 3.8 18 51-68 43-60 (135)
9 d2hjqa1 a.140.3.2 (A:50-103) H 5.2 3.2E+02 0.024 18.2 3.6 23 256-278 29-51 (54)
10 d1o5xa_ c.1.1.1 (A:) Triosepho 5.0 1.4E+02 0.01 25.0 2.0 18 114-131 163-186 (246)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.22 E-value=40 Score=20.07 Aligned_cols=18 Identities=0% Similarity=0.121 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019545 89 VLQIVLWAAEAVYILWLF 106 (339)
Q Consensus 89 l~~i~LW~lw~~Yi~ylf 106 (339)
+.+++.|++|+-|.+..+
T Consensus 2 laslaiw~fw~ffalli~ 19 (26)
T d1rzhh2 2 LASLAIYSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356778888776655443
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=13.63 E-value=70 Score=20.47 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019545 89 VLQIVLWAAEAVYILW 104 (339)
Q Consensus 89 l~~i~LW~lw~~Yi~y 104 (339)
+.++++|++|+-|..-
T Consensus 5 ~Aql~ly~Fw~FFagL 20 (37)
T d1eysh2 5 AAQITIWAFWLFFFGL 20 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666665554433
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.57 E-value=1.7e+02 Score=23.40 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=20.6
Q ss_pred hhhchhcccCccccCCCccChhHHHHHHHHHHHHHHHhhhhcccccCCC
Q 019545 136 FVLPLMNSVGIRLIDAPVLHPMSEGLFNFVIGWTFMFAPLLFTDCKRDR 184 (339)
Q Consensus 136 fIlP~ln~~GI~~~~apvvhPv~eaLFNf~~aW~lmfapLLf~D~r~qk 184 (339)
++.|.++.+|++.-+ =-++.++|.+..+-.-+ .-=.+.|+-|+|
T Consensus 46 ~~~p~~~~~g~s~~~----~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGD----LGFALSGISIAYGFSKF-IMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHTTSSTTCSSC----HHHHHHHHHHHHHHHHH-HHHHHHHHSCHH
T ss_pred HHHHHHHHhCcCHHH----HHHHHHHHHHHHHHHHH-HHHHHHHHcCch
Confidence 455666777772221 12333444443332222 222467888865
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.45 E-value=2.1e+02 Score=18.88 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=26.5
Q ss_pred ccccCCCcCCCchhHHHH----HHHHHhhhhhhhhhhhc
Q 019545 178 TDCKRDRYKGSLDVLWGF----QMFLTNTFLIPYMAIRL 212 (339)
Q Consensus 178 ~D~r~qk~~~~l~~lW~~----amFlTnaFLLPYmAlR~ 212 (339)
.||-|..+|-+.+-=|-. ..|....|-.|++++|.
T Consensus 3 ~eGPG~NLPFsv~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 3 EEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp CCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccchhHHHHHHHHHHHHhccccchHHHHHH
Confidence 466777788777655644 36778889999999997
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.28 E-value=1.7e+02 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 019545 235 APIVGLIGGAICLLSTLWALY 255 (339)
Q Consensus 235 Sr~~G~vg~lvgi~sI~wal~ 255 (339)
+.++-..++..|++.+.|++-
T Consensus 3 ~eil~aa~lsfglifvgwglg 23 (32)
T d2e74f1 3 EEMLYAALLSFGLIFVGWGLG 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhHHH
Confidence 445566677888999999873
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.09 E-value=1.5e+02 Score=23.52 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCcccChhhH
Q 019545 84 DNVRRVLQIVLWAAEAVYILWLFLLPYAPGDPVWAISSETV 124 (339)
Q Consensus 84 ~~~~~l~~i~LW~lw~~Yi~ylfLlp~APgdP~waiqPeTl 124 (339)
++.+.++-.+++++.++..++.+.--++=|+ .|+|+
T Consensus 73 gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~-----~P~T~ 108 (144)
T d1v54d_ 73 NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP-----IPHTF 108 (144)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-----CCGGG
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCC
Confidence 4557777777777777766666544333344 45555
No 7
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=5.65 E-value=1.1e+02 Score=22.79 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=20.3
Q ss_pred cChhhHHHHHHhhhchhhhhchhcccCccccCCCccC
Q 019545 119 ISSETVNSLVGLSLNFFFVLPLMNSVGIRLIDAPVLH 155 (339)
Q Consensus 119 iqPeTl~~I~~lSlnFFfIlP~ln~~GI~~~~apvvh 155 (339)
+.|+|.+++.+.-. ..||+++++||.-
T Consensus 91 ~~p~~~~~~~~~~~----------~~gi~~ldapVsG 117 (156)
T d2cvza2 91 GEPEASRRLAERLR----------EKGVTYLDAPVSG 117 (156)
T ss_dssp CCHHHHHHHHHHHH----------TTTEEEEECCEES
T ss_pred CCHHHHHHHHHHHH----------HcCCeEEeccccC
Confidence 56888887765543 4599999999864
No 8
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.26 E-value=2.7e+02 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.065 Sum_probs=13.4
Q ss_pred hhhhcCcccccccccccC
Q 019545 51 QRRIHLTRTVVCHAARRK 68 (339)
Q Consensus 51 ~~r~~~~~~~~~~a~~~~ 68 (339)
.+..+...+|.|.|-|-+
T Consensus 43 lk~~~~~A~H~c~Ayr~~ 60 (135)
T d1vi7a1 43 VRAEHPDARHHCVAWVAG 60 (135)
T ss_dssp HHHHCTTCSBCCEEEECC
T ss_pred HHhhCCCCceEEEEEEEe
Confidence 455566789999998854
No 9
>d2hjqa1 a.140.3.2 (A:50-103) Hypothetical protein YqbF {Bacillus subtilis [TaxId: 1423]}
Probab=5.22 E-value=3.2e+02 Score=18.16 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.2
Q ss_pred hcCCCCCCChHHHHHHHHHHhcc
Q 019545 256 GRMDGDFGGITERWEFLVSYLGS 278 (339)
Q Consensus 256 ~R~dgd~Gdla~R~~YF~~~~~s 278 (339)
||.-.||-+-.||..|-.+|...
T Consensus 29 g~~ps~fkn~~eria~il~qidn 51 (54)
T d2hjqa1 29 GRNPSDFKNADERIAYILKQIDN 51 (54)
T ss_dssp TCCTTSCCSHHHHHHHHHHHHTT
T ss_pred CCChhhhcChHHHHHHHHHHhhc
Confidence 55558999999999999998764
No 10
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}
Probab=5.03 E-value=1.4e+02 Score=24.96 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=11.8
Q ss_pred CCCccc------ChhhHHHHHHhh
Q 019545 114 DPVWAI------SSETVNSLVGLS 131 (339)
Q Consensus 114 dP~wai------qPeTl~~I~~lS 131 (339)
||+||| +|+-++|+....
T Consensus 163 EPvWAIGTG~~as~~~i~e~~~~I 186 (246)
T d1o5xa_ 163 EPLWAIGTGKTATPEQAQLVHKEI 186 (246)
T ss_dssp CCGGGSSSSCCCCHHHHHHHHHHH
T ss_pred cccccccCCCCcccchhhhhhhHH
Confidence 699999 455566554433
Done!