Query 019546
Match_columns 339
No_of_seqs 249 out of 1159
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 03:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.2E-24 3.9E-29 165.2 6.4 60 79-138 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 77.4 1.7 5.7E-05 34.2 3.1 28 75-104 3-31 (77)
3 1u3e_M HNH homing endonuclease 72.5 0.71 2.4E-05 39.8 -0.1 38 80-120 109-146 (174)
4 1z1b_A Integrase; protein-DNA 58.6 8.7 0.0003 34.5 4.2 41 82-126 15-55 (356)
5 3jtz_A Integrase; four strande 41.3 51 0.0018 25.5 5.6 43 84-126 29-75 (88)
6 1x60_A Sporulation-specific N- 24.6 37 0.0013 24.8 2.1 23 102-124 46-68 (79)
7 3ju0_A Phage integrase; four s 24.1 1.1E+02 0.0039 24.4 5.1 43 84-126 29-75 (108)
8 1uta_A FTSN, MSGA, cell divisi 22.1 79 0.0027 23.3 3.5 24 101-124 45-68 (81)
9 2ftc_I Mitochondrial ribosomal 19.0 1.3E+02 0.0043 24.8 4.4 37 89-128 78-115 (118)
10 1b69_A Protein (integrase); in 17.2 1.7E+02 0.0059 22.2 4.4 26 78-104 10-35 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.90 E-value=1.2e-24 Score=165.24 Aligned_cols=60 Identities=62% Similarity=1.031 Sum_probs=57.2
Q ss_pred CceeEEECCCCcEEEEEeecCC-CcEeeccCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 019546 79 DYRGVRQRTWGKWVAEIREPNR-GNRLWLGTFPSAVEAALAYDHAARAMYGPCARLNLPDV 138 (339)
Q Consensus 79 ~YRGVr~r~~GKW~A~Ir~~~~-gkrv~LGtFdT~EEAArAYD~AA~k~~G~~A~~NFP~~ 138 (339)
+||||++++||||+|+|+++.+ |+++|||||+|+||||+|||.||++++|.+|++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999864 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=77.37 E-value=1.7 Score=34.18 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCCCCceeEEEC-CCCcEEEEEeecCCCcEe
Q 019546 75 NGRCDYRGVRQR-TWGKWVAEIREPNRGNRL 104 (339)
Q Consensus 75 ~~~S~YRGVr~r-~~GKW~A~Ir~~~~gkrv 104 (339)
...|+|.||++. +.+.|.|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 346899999665 57999999887 45443
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=72.46 E-value=0.71 Score=39.76 Aligned_cols=38 Identities=11% Similarity=-0.096 Sum_probs=28.8
Q ss_pred ceeEEECCCCcEEEEEeecCCCcEeeccCCCCHHHHHHHHH
Q 019546 80 YRGVRQRTWGKWVAEIREPNRGNRLWLGTFPSAVEAALAYD 120 (339)
Q Consensus 80 YRGVr~r~~GKW~A~Ir~~~~gkrv~LGtFdT~EEAArAYD 120 (339)
++||.....++|.+.|.. . +..+||.|.|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence 456633334678899986 4 6678999999999999974
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=58.62 E-value=8.7 Score=34.53 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=30.4
Q ss_pred eEEECCCCcEEEEEeecCCCcEeeccCCCCHHHHHHHHHHHHHHh
Q 019546 82 GVRQRTWGKWVAEIREPNRGNRLWLGTFPSAVEAALAYDHAARAM 126 (339)
Q Consensus 82 GVr~r~~GKW~A~Ir~~~~gkrv~LGtFdT~EEAArAYD~AA~k~ 126 (339)
||++++.|.|..+.. ..|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 577777899998765 3788899996 8888877766554444
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.28 E-value=51 Score=25.49 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=29.0
Q ss_pred EECCCC--cEEEEEeecCCCcEeeccCCC--CHHHHHHHHHHHHHHh
Q 019546 84 RQRTWG--KWVAEIREPNRGNRLWLGTFP--SAVEAALAYDHAARAM 126 (339)
Q Consensus 84 r~r~~G--KW~A~Ir~~~~gkrv~LGtFd--T~EEAArAYD~AA~k~ 126 (339)
+-.+.| .|.-+.+...+.+++-||.|+ |..+|...-+.+...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 444444 588888764556778899998 4777776666655544
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=24.56 E-value=37 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.3
Q ss_pred cEeeccCCCCHHHHHHHHHHHHH
Q 019546 102 NRLWLGTFPSAVEAALAYDHAAR 124 (339)
Q Consensus 102 krv~LGtFdT~EEAArAYD~AA~ 124 (339)
-||++|.|.+.++|..+-+....
T Consensus 46 yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 46 YKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHH
Confidence 47889999999999888665443
No 7
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=24.06 E-value=1.1e+02 Score=24.43 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=28.0
Q ss_pred EECCCC--cEEEEEeecCCCcEeeccCCCC--HHHHHHHHHHHHHHh
Q 019546 84 RQRTWG--KWVAEIREPNRGNRLWLGTFPS--AVEAALAYDHAARAM 126 (339)
Q Consensus 84 r~r~~G--KW~A~Ir~~~~gkrv~LGtFdT--~EEAArAYD~AA~k~ 126 (339)
+-.+.| .|.-+.+...+.+++-||.|+. ..+|...-+.+...+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 344444 5888887644556788999984 677766666555444
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.08 E-value=79 Score=23.30 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=18.8
Q ss_pred CcEeeccCCCCHHHHHHHHHHHHH
Q 019546 101 GNRLWLGTFPSAVEAALAYDHAAR 124 (339)
Q Consensus 101 gkrv~LGtFdT~EEAArAYD~AA~ 124 (339)
--||++|-|.+.++|..+-++...
T Consensus 45 ~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 45 WNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SEEEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 357889999999999888665444
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=18.95 E-value=1.3e+02 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=28.4
Q ss_pred CcEEEEEeecCCCcEee-ccCCCCHHHHHHHHHHHHHHhcC
Q 019546 89 GKWVAEIREPNRGNRLW-LGTFPSAVEAALAYDHAARAMYG 128 (339)
Q Consensus 89 GKW~A~Ir~~~~gkrv~-LGtFdT~EEAArAYD~AA~k~~G 128 (339)
-.|+|+|. -|+-|+ ++...+++.|..|..+|+.++=+
T Consensus 78 ~~wva~Vk---~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 78 DHYVTPVK---AGRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred cEEEEEEC---CCCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 35999998 455554 66568899999999999988743
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=17.16 E-value=1.7e+02 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCceeEEECCCCcEEEEEeecCCCcEe
Q 019546 78 CDYRGVRQRTWGKWVAEIREPNRGNRL 104 (339)
Q Consensus 78 S~YRGVr~r~~GKW~A~Ir~~~~gkrv 104 (339)
--+.|+++|..|+|++++.+. .|++.
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~-~Gkr~ 35 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDS-FGEPQ 35 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECT-TSSEE
T ss_pred ccCCCeEEccCCcEEEEEEcC-CCCEE
Confidence 467899999999999999874 34443
Done!