Query 019547
Match_columns 339
No_of_seqs 97 out of 108
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3966 p53-mediated apoptosis 100.0 7.4E-65 1.6E-69 476.3 21.5 221 43-293 82-305 (360)
2 PF07264 EI24: Etoposide-induc 99.9 2.7E-27 5.8E-32 214.9 14.2 204 26-261 1-208 (219)
3 PRK04949 putative sulfate tran 99.0 3.9E-07 8.3E-12 86.7 24.3 223 16-285 6-236 (251)
4 PRK12768 CysZ-like protein; Re 98.3 0.0002 4.3E-09 68.0 22.3 185 43-263 13-205 (240)
5 COG2981 CysZ Uncharacterized p 97.9 0.015 3.2E-07 55.3 24.3 204 45-285 22-234 (250)
6 COG4818 Predicted membrane pro 49.7 55 0.0012 27.5 5.8 38 42-82 26-63 (105)
7 PF12404 DUF3663: Peptidase ; 36.2 15 0.00032 29.5 0.5 14 243-256 64-77 (77)
8 KOG4561 Uncharacterized conser 31.8 3.1E+02 0.0067 27.1 8.9 34 116-149 233-271 (281)
9 PRK12874 ubiA prenyltransferas 27.3 5.3E+02 0.011 25.0 9.7 12 134-145 66-77 (291)
10 COG4818 Predicted membrane pro 25.5 1.8E+02 0.0039 24.5 5.1 30 185-214 36-65 (105)
No 1
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=100.00 E-value=7.4e-65 Score=476.29 Aligned_cols=221 Identities=26% Similarity=0.506 Sum_probs=205.3
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 019547 43 RSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIFWFYPL 122 (339)
Q Consensus 43 ~s~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~l~~~f~~lWv~Pl 122 (339)
.+|++.++..|||++||+.++.|+++|..+.+|+++..+.. . .++++++..+|+|++.+|+.+|...|++|+
T Consensus 82 ~Ep~i~k~~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~----f----~g~~s~h~~vw~wl~~~ls~lfg~iwVlPi 153 (360)
T KOG3966|consen 82 PEPPIKKDSFLCCLWNGGAMWISFLLFWQVCIPILGLFFSF----F----DGTDSGHNVVWGWLHPILSLLFGYIWVLPI 153 (360)
T ss_pred CCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhe----e----ccCCccccchHhhhhHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999987662 1 123456668999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019547 123 YVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEVNAIG 202 (339)
Q Consensus 123 y~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~~ll~ 202 (339)
|++|+++|++||+|||++||++.|++ |+.+.++++++||+++++++|+.|++|++++.
T Consensus 154 F~lSkiV~alWF~DIa~aa~rv~k~~----------------------P~p~p~~Sk~~Ad~Lfs~l~Q~lFLiQgMlv~ 211 (360)
T KOG3966|consen 154 FFLSKIVQALWFSDIAGAAMRVLKLP----------------------PPPVPPFSKMLADTLFSALHQILFLIQGMLVQ 211 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999866 45578999999999999999999999999999
Q ss_pred ccC--chhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHhHhhhhhhhhcchhhhHHHhhhcc-hhhHHHHHHHHHHH
Q 019547 203 FLP--YIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFS-PLVAYGVMAILYPL 279 (339)
Q Consensus 203 ~iP--~iG~~l~f~~~s~lys~YcFEYkW~~~g~~L~~Rl~~fE~~WaYF~GFG~p~tl~t~~~s-~lv~~~ifallFPl 279 (339)
++| +||+.++++|||+|||+|||||+|.++||+++||+++||+|||||+|||+|+|++|.+.| .+||+|+|+++||+
T Consensus 212 l~Pi~lVg~~i~~lHm~LLySlYcFeY~wfn~g~e~hrRl~~iE~nWPYffGFG~PLa~lt~~sSs~ivssciFsilFPl 291 (360)
T KOG3966|consen 212 LLPIPLVGPVIVYLHMALLYSLYCFEYFWFNYGLEFHRRLDIIESNWPYFFGFGTPLALLTSISSSMIVSSCIFSILFPL 291 (360)
T ss_pred hcChhhcchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHhcCchhccCCcHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 986 999999999999999999999999999999999999999999999999999999999985 58999999999999
Q ss_pred HHHhhcCCCchhhh
Q 019547 280 FVLTATASGAEEVI 293 (339)
Q Consensus 280 fII~a~~a~p~~~~ 293 (339)
|||+||+|+|+..-
T Consensus 292 FIis~neak~p~~~ 305 (360)
T KOG3966|consen 292 FIISSNEAKYPANW 305 (360)
T ss_pred HeecccccCCCchH
Confidence 99999999987543
No 2
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=99.95 E-value=2.7e-27 Score=214.92 Aligned_cols=204 Identities=26% Similarity=0.467 Sum_probs=154.0
Q ss_pred HhHHhhhc-cceeeeeecCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhhHHH
Q 019547 26 EGLREACC-LHRVVILCRRSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYS 104 (339)
Q Consensus 26 ~G~~da~~-~~r~v~~~~~s~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~ 104 (339)
+|+++++| +..+. |+++++...+|+++|++++.++.+++...+.+.+.+..+... ..+.....
T Consensus 1 ~g~~~~~~~~~~~~-----~~~l~~~~l~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~wl~~~-- 64 (219)
T PF07264_consen 1 CGFRYALRGFRLLF-----SPKLRRLSLIPLLLNLLLFLALFIFLWSYLDPLLEWLLSGSP---------SWDWLQWL-- 64 (219)
T ss_dssp -STTHHHHHHHHHT-----STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred CHHHHHHHHhHHhC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch---------hhhHHHHH--
Confidence 47777777 53333 999999999999999999999888888888888876554210 00000000
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCCCCchhhHHHHH
Q 019547 105 FLRLALIQLLYI--FWFYPLYVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIG 182 (339)
Q Consensus 105 ~l~~~l~~~f~~--lWv~Ply~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Ia 182 (339)
++...+..++.+ +|++|.++.+.++|.+|++||++++-+..+++.- + ...|+...++.+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~i~~~ve~~~~~~~y-~---------------~~~~~~~~~~~~~l~ 128 (219)
T PF07264_consen 65 WIAWIIFFLLAVLLFWLLFSYLISLIVSPFWYDDIAERVEKHLEGRHY-P---------------HSPPSSFSSLWRSLK 128 (219)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTT----T---------------TSSCCCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhhccCCC-C---------------CccccccchHHHHHH
Confidence 455567777777 9999999999999999999999999433322211 0 023556778999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHH-hhhceeeccCCcchhHHHHhHhhhhhhhhcchhhhHHHh
Q 019547 183 EQVYSMLLLSFFFVEVNAIGFLPYIGKGFNFLLLSWMYAY-YCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAY 261 (339)
Q Consensus 183 d~~y~vLl~~~f~lq~~ll~~iP~iG~~l~f~~~s~lys~-YcFEYkW~~~g~~L~~Rl~~fE~~WaYF~GFG~p~tl~t 261 (339)
+++++.++...+.++...+.+||++|.++.+++.+|+|++ |||||.|...|++.++|.+++|+||+|+.|||++++++.
T Consensus 129 ~~~~~~l~~l~~~l~~l~L~fIP~vg~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~er~~~~~~~~~~~~gfG~~~~ll~ 208 (219)
T PF07264_consen 129 DSLKSLLLFLVLLLLLLPLYFIPVVGQILFFVLWFWLNAYFLGFEYLWSSLGRSFEERKRFLERNRGYFLGFGLPFALLL 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999854
No 3
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=98.96 E-value=3.9e-07 Score=86.71 Aligned_cols=223 Identities=16% Similarity=0.238 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHhHHhhhccceeeeeecCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhcc
Q 019547 16 KSKQAVVLYLEGLREACCLHRVVILCRRSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCL 95 (339)
Q Consensus 16 ~~~~~~~l~~~G~~da~~~~r~v~~~~~s~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~~~~s~~~~~~~~~ 95 (339)
|-..|...+.+|++| .++|++|+=+..=.++|.++|.+.+...-..+...+.|+.+.
T Consensus 6 ~~~~G~~~~~~g~~~-----------l~~P~lr~~~liPl~inllLf~~~l~~~~~~~~~~l~~l~~~------------ 62 (251)
T PRK04949 6 QPRSGFHYFIQGWKL-----------ILQPGLRRFVILPLLVNILLFGGAFWWLFTQLDAWIDWLMSQ------------ 62 (251)
T ss_pred hhhhHHHHHHHHHHH-----------hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------
Confidence 344555555555553 278999999999999999998876554444344444554331
Q ss_pred ccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCC
Q 019547 96 DSGILKFYSFLRLALIQLLYI----FWFYPLYVFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRL 171 (339)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~f~~----lWv~Ply~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 171 (339)
..+-.+|++..+..+..+ +-.+=.-.++-++.+-++.++||+.=+...+++. ++. +-.
T Consensus 63 ---~p~wl~wl~~ll~~l~~l~~l~l~~~lf~~v~~~IaaPF~~~lAE~VE~~l~g~~~-----~~~----------~~~ 124 (251)
T PRK04949 63 ---LPDWLSWLSYLLWPLAVLSVLLVFSFFFSTLANFIAAPFNGLLAEKVEARLTGETL-----PDT----------GIA 124 (251)
T ss_pred ---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCC-----CCC----------chH
Confidence 111124555555444442 2233333456677888999999998664333211 000 001
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhhccCchh----HHHHHHHHHHHHHHhhhceeeccCCcchhHHHHhHhhhh
Q 019547 172 PGLGGVMIVIGEQVYSMLLLSFFFVEVNAIGFLPYIG----KGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNW 247 (339)
Q Consensus 172 ~~~~~v~~~Iad~~y~vLl~~~f~lq~~ll~~iP~iG----~~l~f~~~s~lys~YcFEYkW~~~g~~L~~Rl~~fE~~W 247 (339)
+.+..+.+.+++++-++.......+-..++.+||.+| +++-|+.-+|+-+.=-+||-..++|.+..++.+..-+|.
T Consensus 125 ~~~~~~~r~l~~el~kl~y~l~~~i~llll~fIP~vg~~~~pvl~~~~~awll~~ey~d~~~~r~~~~~~~~r~~l~~~r 204 (251)
T PRK04949 125 GLVKDVPRILKREWQKLAYYLPRAIVLLLLSFIPVVGQTVAPVLWFLFSAWMMAIQYCDYPFDNHKVSFKDMRAALRQKR 204 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHhHhHHHHCCCCHHHHHHHHHHhh
Confidence 2244556677777755555544444455678999999 589999999999999999999999999999999999999
Q ss_pred hhhhcchhhhHHHhhhcchhhHHHHHHHHHHHHHHhhc
Q 019547 248 AFFAGFGSPCVLAYFFFSPLVAYGVMAILYPLFVLTAT 285 (339)
Q Consensus 248 aYF~GFG~p~tl~t~~~s~lv~~~ifallFPlfII~a~ 285 (339)
+-=+|||...+++++. |++|-. +.|.-++.|+
T Consensus 205 ~~~~gfG~~~~l~~~I--PilNll----~mP~aV~gaT 236 (251)
T PRK04949 205 GTSLQFGALVSLFTMI--PLLNLV----IMPVAVCGAT 236 (251)
T ss_pred hHHHHHHHHHHHHHHH--HHHHHH----HHhHHHHHHH
Confidence 9999999999988755 455543 4488888876
No 4
>PRK12768 CysZ-like protein; Reviewed
Probab=98.33 E-value=0.0002 Score=68.00 Aligned_cols=185 Identities=12% Similarity=0.003 Sum_probs=122.3
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccchhhhhhhhccccchhhHHHHHHHHHHHHHHH-H
Q 019547 43 RSTKLLIRTGQCFLLNGFIFLGSMFVL----KSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYI-F 117 (339)
Q Consensus 43 ~s~~i~~~~~qc~lLNg~iflgSil~f----~~~v~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~l~~~f~~-l 117 (339)
.||..|+-..++..+-..++.+--..+ ...+.|.+.++.+ ...+--+|++..+..+..+ +
T Consensus 13 ~~~~~r~vl~~~~~lt~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~p~wl~wL~~ll~~l~~l~~ 77 (240)
T PRK12768 13 LSPPMRSVFWKVLGLTLLLLVVLWFALRRLFSWFAWPWAEQLLP---------------GFPDWAGWLGWVLSIAAGLGL 77 (240)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCccHHHHHHHHHHHHHHHHH
Confidence 689999999998887777655422111 2222232222221 0111225555555554442 2
Q ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHH
Q 019547 118 WFYPLY---VFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFF 194 (339)
Q Consensus 118 Wv~Ply---~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f 194 (339)
-+.-.| .++-++.+.++.++|++.-+.-..+. .|....++.+++.+++-.++.....
T Consensus 78 l~~~~flf~~va~~IaapF~~~lae~VE~~~yp~~--------------------~~~~~~~i~~sl~~~l~~l~~~l~~ 137 (240)
T PRK12768 78 ALGLALLIAPVTALIAGFFLDDVAEIVEREDYPAE--------------------PPGTALPLGRALIESLKFLGLVILG 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhCCCC--------------------CccccccHHHHHHHHHHHHHHHHHH
Confidence 222223 34577889999999998854211110 0111224566677777766666666
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHhHhhhhhhhhcchhhhHHHhhh
Q 019547 195 FVEVNAIGFLPYIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFF 263 (339)
Q Consensus 195 ~lq~~ll~~iP~iG~~l~f~~~s~lys~YcFEYkW~~~g~~L~~Rl~~fE~~WaYF~GFG~p~tl~t~~ 263 (339)
.+-...+.+||.+|.++.++..+|+.+-=-|||-..+++ +.+++.+...+|.+-..|||.+++++++.
T Consensus 138 ~ll~L~L~fIP~v~~vl~~l~~awLl~~ey~d~a~~r~~-~~~e~r~~l~~~r~~~~~fG~~~all~~I 205 (240)
T PRK12768 138 NLVALPLLFVPGINLIAFFVINGYLLGREFFEFAAMRFR-SEAEAKAFRRKHATTVFLAGLVIAAFVAI 205 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 666667789999999999999999999866799999988 99999999999999999999999988855
No 5
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=97.85 E-value=0.015 Score=55.28 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=136.6
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHH-HHHHHH
Q 019547 45 TKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYIF-WFYPLY 123 (339)
Q Consensus 45 ~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~l~~~f~~l-Wv~Ply 123 (339)
|-+|+-++-=.++|.....|-...+-+-..|-+..+.+ ++.+--+|++.++..+.-.. -+.=-|
T Consensus 22 pglrrfvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~---------------~iPdWl~wLs~v~~~la~L~lll~~~~ 86 (250)
T COG2981 22 PGLRRFVILPLLLNILLWGGLFWLLFSQALPWIDTLMP---------------GIPDWLGWLSYLLWILAVLLLLLVFAF 86 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------cCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999998877677777777777766555 23333466666554444321 111223
Q ss_pred HH---HHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019547 124 VF---SIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEVNA 200 (339)
Q Consensus 124 ~i---S~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~~l 200 (339)
.+ +-++.+-|++|.||..=+...+++.. .++. -.-...+-++++.+.-.+....-..+...+
T Consensus 87 lfs~v~~~IAapFng~lAEkvE~~l~g~~~~---d~~~------------~~l~~dipR~l~re~kkL~~~lp~~ivll~ 151 (250)
T COG2981 87 LFSTVANLIAAPFNGLLAEKVEKRLTGETPP---DPGG------------VGLMKDIPRALAREWKKLGYVLPGAIVLLL 151 (250)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHcCCCCC---Ccch------------hhhhhhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33 44567789999999876544332210 0000 001344567777888888888888899999
Q ss_pred hhccCchh----HHHHHHHHHHHHHHhhhceeeccCCcchhH-HHHhHhhhhhhhhcchhhhHHHhhhcchhhHHHHHHH
Q 019547 201 IGFLPYIG----KGFNFLLLSWMYAYYCFEYKWNFSEVGLDK-RLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYGVMAI 275 (339)
Q Consensus 201 l~~iP~iG----~~l~f~~~s~lys~YcFEYkW~~~g~~L~~-Rl~~fE~~WaYF~GFG~p~tl~t~~~s~lv~~~ifal 275 (339)
+.++|-+| +++-|+.-+|+-|-=-|||--++...++++ |....+++ +==+|||...++.++. |++|..+
T Consensus 152 L~fvP~~g~~v~pv~~flft~wmlaiqy~dyp~dnhk~~f~~mr~~l~q~~-~~~~~fGlv~~~f~~I--PlvNl~i--- 225 (250)
T COG2981 152 LLFVPGVGQTVAPVAWFLFTAWMLAIQYFDYPADNHKVPFAEMRLLLRQYR-VTVFGFGLVVALFTAI--PLVNLLI--- 225 (250)
T ss_pred HHHhcccCChHHHHHHHHHHHHHHHHHHhccHHhcCCCcHHHHHHHHHHhh-hHHHHHHHHHHHHHHH--HHHHHHH---
Confidence 99999555 578899999999999999999999999555 44555555 4567899888766644 5777543
Q ss_pred HHHHHHHhhc
Q 019547 276 LYPLFVLTAT 285 (339)
Q Consensus 276 lFPlfII~a~ 285 (339)
-|+++-.++
T Consensus 226 -~P~av~gat 234 (250)
T COG2981 226 -MPVAVAGAT 234 (250)
T ss_pred -HHHHHHHHH
Confidence 377665544
No 6
>COG4818 Predicted membrane protein [Function unknown]
Probab=49.73 E-value=55 Score=27.50 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=26.4
Q ss_pred cCChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019547 42 RRSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILP 82 (339)
Q Consensus 42 ~~s~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~ 82 (339)
++|+-+|=+..|+++.=+.+ +++.+-...+|.+.|++.
T Consensus 26 re~~FVrFHAmQS~ltF~~l---~~l~ill~~iP~Ig~lls 63 (105)
T COG4818 26 RESKFVRFHAMQSFLTFLGL---WLLIILLAFIPYIGWLLS 63 (105)
T ss_pred ccCcceeehhHHHHHHHHHH---HHHHHHHHHhhhhHHHHH
Confidence 45888888999999755443 234444456898888766
No 7
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=36.22 E-value=15 Score=29.48 Aligned_cols=14 Identities=57% Similarity=1.395 Sum_probs=11.8
Q ss_pred Hhhhhhhhhcchhh
Q 019547 243 FESNWAFFAGFGSP 256 (339)
Q Consensus 243 fE~~WaYF~GFG~p 256 (339)
+|+.|||+-||-.|
T Consensus 64 lE~~WAF~QGf~~~ 77 (77)
T PF12404_consen 64 LESQWAFYQGFRTP 77 (77)
T ss_pred HHHhhHHHhcccCC
Confidence 68899999999655
No 8
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=31.81 E-value=3.1e+02 Score=27.09 Aligned_cols=34 Identities=18% Similarity=0.570 Sum_probs=24.9
Q ss_pred HHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHcCCCC
Q 019547 116 IFWFYPLYVF-----SIVLSTLWYNDIAKYGFAAMGRSG 149 (339)
Q Consensus 116 ~lWv~Ply~i-----S~iln~~W~~dIA~~a~~~~~~~~ 149 (339)
+.|..|++++ --++|-.|+..|-+.|.+..++.+
T Consensus 233 ~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~ 271 (281)
T KOG4561|consen 233 VPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKKAK 271 (281)
T ss_pred hchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 4455555544 357899999999999998876543
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=27.27 E-value=5.3e+02 Score=25.02 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHc
Q 019547 134 YNDIAKYGFAAM 145 (339)
Q Consensus 134 ~~dIA~~a~~~~ 145 (339)
.||+.|+=.+..
T Consensus 66 ~Nd~~DrdiD~~ 77 (291)
T PRK12874 66 FNRLVDRDIDKD 77 (291)
T ss_pred HHhhhhhccccC
Confidence 467777644433
No 10
>COG4818 Predicted membrane protein [Function unknown]
Probab=25.46 E-value=1.8e+02 Score=24.51 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCchhHHHHHH
Q 019547 185 VYSMLLLSFFFVEVNAIGFLPYIGKGFNFL 214 (339)
Q Consensus 185 ~y~vLl~~~f~lq~~ll~~iP~iG~~l~f~ 214 (339)
+.|.+.....-+...++.++|+||..++=+
T Consensus 36 mQS~ltF~~l~~l~ill~~iP~Ig~lls~~ 65 (105)
T COG4818 36 MQSFLTFLGLWLLIILLAFIPYIGWLLSGL 65 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence 456677777777788999999999877643
Done!