Query 019547
Match_columns 339
No_of_seqs 97 out of 108
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tx3_A Uncharacterized protein 98.9 4.8E-08 1.6E-12 91.4 18.9 207 43-285 25-236 (249)
2 1pp5_A Microcin J25; lariat, p 14.6 20 0.00069 21.6 -1.1 10 249-258 9-18 (26)
3 1v54_L VIIIA, cytochrome C oxi 12.6 1E+02 0.0035 21.3 1.9 27 234-260 13-40 (47)
4 3vr8_D Succinate dehydrogenase 9.8 3.2E+02 0.011 23.5 4.5 41 187-227 91-141 (156)
5 2y69_L Cytochrome C oxidase su 9.5 1.5E+02 0.005 21.8 1.9 27 234-260 29-56 (63)
6 2khr_A Protein MBTH; sideropho 8.6 1.3E+02 0.0043 22.9 1.3 14 235-248 47-60 (74)
7 2pst_X Hypothetical protein PA 8.5 1.2E+02 0.0041 23.0 1.1 14 235-248 45-58 (74)
8 2h88_D Succinate dehydrogenase 8.4 7.1E+02 0.024 19.4 5.8 37 192-228 47-89 (103)
9 1jb0_K Photosystem 1 reaction 6.8 1.5E+02 0.0051 23.0 1.0 36 230-271 37-72 (83)
10 3arc_I Photosystem II reaction 6.8 5.5E+02 0.019 17.0 3.5 20 51-70 3-22 (38)
No 1
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=98.95 E-value=4.8e-08 Score=91.35 Aligned_cols=207 Identities=15% Similarity=0.198 Sum_probs=136.7
Q ss_pred CChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhccccchhhHHHHHHHHHHHHHHH-HHHHH
Q 019547 43 RSTKLLIRTGQCFLLNGFIFLGSMFVLKSAVIPFLLWILPDQCSQIRSQELCLDSGILKFYSFLRLALIQLLYI-FWFYP 121 (339)
Q Consensus 43 ~s~~i~~~~~qc~lLNg~iflgSil~f~~~v~P~l~~~l~~~~s~~~~~~~~~~~~~~~~~~~l~~~l~~~f~~-lWv~P 121 (339)
.+|++|+=+..=.++|.++|.+-...+-.-+...+.+..+. ..+-.+|++..+..+..+ +-+.-
T Consensus 25 ~~p~lr~~vl~Pllinl~L~~~~~~~~~~~~~~~i~~~~~~---------------lp~Wl~wl~~ll~~l~~~~~lll~ 89 (249)
T 3tx3_A 25 RTKGLRRYVVVPILTNLILFSLAFTWLYGEVDYWLNRFMSW---------------LPDFFQWLEFILWPLAVITIIALF 89 (249)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------CTTHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988775544322222222221110 001113333333322221 11111
Q ss_pred HH---HHHHHHHHHhHHHHHHHHHHHcCCCCCCccccccchhhhhhhhhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 019547 122 LY---VFSIVLSTLWYNDIAKYGFAAMGRSGQSSKELSRQDETLQNTEQKGRLPGLGGVMIVIGEQVYSMLLLSFFFVEV 198 (339)
Q Consensus 122 ly---~iS~iln~~W~~dIA~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~Iad~~y~vLl~~~f~lq~ 198 (339)
.| .++-++.+-++.++|++.=+...+++... . +..+-.+.+.+++.+++-.+.......+-.
T Consensus 90 ~~lf~~va~~IaapF~~~LAE~VE~~l~g~~~~~-----~----------~~~~~~~~l~r~l~~~l~~l~~~l~~~l~l 154 (249)
T 3tx3_A 90 SFIFSTIMHLIAAPFNGLLAEKVERYESGESLGD-----E----------GFLGLFKDIPRTLKREMQKLMYYIPRALGF 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT-----C----------SSGGGSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCCc-----c----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 35566778899999999766544332110 0 001113556788888888888888888888
Q ss_pred HHhhc-cCchhHHHHHHHHHHHHHHhhhceeeccCCcchhHHHHhHhhhhhhhhcchhhhHHHhhhcchhhHHHHHHHHH
Q 019547 199 NAIGF-LPYIGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYGVMAILY 277 (339)
Q Consensus 199 ~ll~~-iP~iG~~l~f~~~s~lys~YcFEYkW~~~g~~L~~Rl~~fE~~WaYF~GFG~p~tl~t~~~s~lv~~~ifallF 277 (339)
..+++ ||.+|+++.++.-+|+.+.=-+||-..++|++.++|.+...+|-+-..|||.++++++.. |++|-.+ -
T Consensus 155 l~L~f~IP~vg~vl~~~~~~~~lg~ey~d~~~~r~~~~~~~~~~~lr~~r~~~~~fG~~~~ll~~I--P~vnl~~----~ 228 (249)
T 3tx3_A 155 FLLSLVIPVIGQVLWYIFVCWMMSIQYLDYPFDNHKLSFPRMRSELHQQRSKTLGFGFGVTVLTMI--PLINLII----M 228 (249)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHHHHTTS--TTGGGTH----H
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHH----H
Confidence 88999 999999999999999999999999999999999999999999999999999999988754 3455332 2
Q ss_pred HHHHHhhc
Q 019547 278 PLFVLTAT 285 (339)
Q Consensus 278 PlfII~a~ 285 (339)
|.-++.|+
T Consensus 229 p~av~gat 236 (249)
T 3tx3_A 229 PLAVCGAT 236 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 2
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=14.58 E-value=20 Score=21.60 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=8.6
Q ss_pred hhhcchhhhH
Q 019547 249 FFAGFGSPCV 258 (339)
Q Consensus 249 YF~GFG~p~t 258 (339)
||.|.|+|.+
T Consensus 9 yfvgigtpis 18 (26)
T 1pp5_A 9 YFVGIGTPIS 18 (26)
T ss_dssp CCSSSSCCCS
T ss_pred eeEecCCCeE
Confidence 8999999964
No 3
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=12.63 E-value=1e+02 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.535 Sum_probs=16.5
Q ss_pred cchhHHHHhHhhhhhhh-hcchhhhHHH
Q 019547 234 VGLDKRLDFFESNWAFF-AGFGSPCVLA 260 (339)
Q Consensus 234 ~~L~~Rl~~fE~~WaYF-~GFG~p~tl~ 260 (339)
.+.+.|-...-.-|.|| .|||.|..++
T Consensus 13 F~~~nk~~~~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 13 FSVENKWRLLAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHhHHHHH
Confidence 34555655556667765 4777777643
No 4
>3vr8_D Succinate dehydrogenase [ubiquinone] cytochrome B subunit, mitochondrial; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_D*
Probab=9.76 E-value=3.2e+02 Score=23.46 Aligned_cols=41 Identities=10% Similarity=0.023 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhccC--chhHH--------HHHHHHHHHHHHhhhce
Q 019547 187 SMLLLSFFFVEVNAIGFLP--YIGKG--------FNFLLLSWMYAYYCFEY 227 (339)
Q Consensus 187 ~vLl~~~f~lq~~ll~~iP--~iG~~--------l~f~~~s~lys~YcFEY 227 (339)
.+++=+-.-.|+.+..++| ..|+. ++.....-++..|.|||
T Consensus 91 al~~H~h~GfqsvI~DYVp~rv~g~~~~K~A~~lL~~~s~~tl~GLy~f~t 141 (156)
T 3vr8_D 91 ALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNE 141 (156)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhheecchhhcCchHHHHHHHHHHHHHHHHHHHheEeee
Confidence 3445556678999999997 45653 55666777899999996
No 5
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.48 E-value=1.5e+02 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.535 Sum_probs=16.1
Q ss_pred cchhHHHHhHhhhhhhh-hcchhhhHHH
Q 019547 234 VGLDKRLDFFESNWAFF-AGFGSPCVLA 260 (339)
Q Consensus 234 ~~L~~Rl~~fE~~WaYF-~GFG~p~tl~ 260 (339)
.+.+.|-.+.-.-|.|| .|||.|+.++
T Consensus 29 F~~~nk~~~~~~~~~f~g~GF~~PF~i~ 56 (63)
T 2y69_L 29 FSVENKWRLLAMMTLFFGSGFAAPFFIV 56 (63)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555566666665 4777777643
No 6
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=8.58 E-value=1.3e+02 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.5
Q ss_pred chhHHHHhHhhhhh
Q 019547 235 GLDKRLDFFESNWA 248 (339)
Q Consensus 235 ~L~~Rl~~fE~~Wa 248 (339)
+-+..++|+|++|.
T Consensus 47 sr~~CL~yIe~~Wt 60 (74)
T 2khr_A 47 SRAACLDYVEKNWT 60 (74)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhc
Confidence 45678999999995
No 7
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=8.49 E-value=1.2e+02 Score=22.97 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.2
Q ss_pred chhHHHHhHhhhhh
Q 019547 235 GLDKRLDFFESNWA 248 (339)
Q Consensus 235 ~L~~Rl~~fE~~Wa 248 (339)
+-+..++|+|++|.
T Consensus 45 sr~~CL~yIe~~Wt 58 (74)
T 2pst_X 45 LKKDCLAYIEEVWT 58 (74)
T ss_dssp CHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHcc
Confidence 35678999999995
No 8
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=8.37 E-value=7.1e+02 Score=19.41 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhccC--chh----HHHHHHHHHHHHHHhhhcee
Q 019547 192 SFFFVEVNAIGFLP--YIG----KGFNFLLLSWMYAYYCFEYK 228 (339)
Q Consensus 192 ~~f~lq~~ll~~iP--~iG----~~l~f~~~s~lys~YcFEYk 228 (339)
+-.-+|+.+..++| ..+ -.+.++-..-++..|.|||.
T Consensus 47 ~~~G~q~vI~DYv~~~~~~~~~~~~~~~~s~~t~~Gl~~~~~~ 89 (103)
T 2h88_D 47 GHWGLGQVITDYVHGDTPIKVANTGLYVLSAITFTGLCYFNYY 89 (103)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCeeeecccccchHHHHHHHHHHHHHHHHHHHHheeeec
Confidence 34458999999998 222 33556666778999999986
No 9
>1jb0_K Photosystem 1 reaction centre subunit X; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.30.1.1 PDB: 3pcq_K*
Probab=6.77 E-value=1.5e+02 Score=23.01 Aligned_cols=36 Identities=39% Similarity=0.489 Sum_probs=18.1
Q ss_pred ccCCcchhHHHHhHhhhhhhhhcchhhhHHHhhhcchhhHHH
Q 019547 230 NFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYG 271 (339)
Q Consensus 230 ~~~g~~L~~Rl~~fE~~WaYF~GFG~p~tl~t~~~s~lv~~~ 271 (339)
.+.|-.+..|..- +|.|||.|-.++|.-+-.+++.+
T Consensus 37 ~~~Gp~lP~~~~~------~f~g~~~~~lLat~S~GHIlG~G 72 (83)
T 1jb0_K 37 RGKGPGLPIALPA------LFEGFGLPELLATTSFGHLLAAG 72 (83)
T ss_dssp SSCCSCC-----------------CCTTGGGHHHHHHHHHHH
T ss_pred CCCCCCCCccchh------ccCCCCHHHHHHHhhHHHHHHHH
Confidence 3456666655443 49999999999887776677654
No 10
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=6.75 E-value=5.5e+02 Score=17.01 Aligned_cols=20 Identities=20% Similarity=0.155 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 019547 51 TGQCFLLNGFIFLGSMFVLK 70 (339)
Q Consensus 51 ~~qc~lLNg~iflgSil~f~ 70 (339)
++|.++...++|..|+++|-
T Consensus 3 tLKi~Vy~vV~ffvsLFiFG 22 (38)
T 3arc_I 3 TLKITVYIVVTFFVLLFVFG 22 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEeeehhHHHHHHHHHHcc
Confidence 45677777788887777665
Done!