BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019548
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 138/250 (55%), Gaps = 19/250 (7%)
Query: 93 NDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSS 152
N T I+++G PG++SE AAL+ E +PC+ F+D F AV AD AV+PIENS
Sbjct: 2 NAXTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58
Query: 153 SGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALAS-SDIVLT 211
GSIH+NYDLLLR + I+ E + CLL LPG + + SHPQAL + T
Sbjct: 59 GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFAT 118
Query: 212 QLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLV 271
+ E DTA +A+ VA + + E+YGL+IL + + DE NITRF
Sbjct: 119 HPQIRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178
Query: 272 LARD-----------PIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 320
+A + P + R KTSIVF L G LF+ALA FALR I+LTKIESR
Sbjct: 179 IAHENNPDISHLKVRPDVARQ----KTSIVFALPNEQGSLFRALATFALRGIDLTKIESR 234
Query: 321 PQRKRPLRVV 330
P RK+ +
Sbjct: 235 PSRKKAFEYL 244
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 9/237 (3%)
Query: 93 NDGTKVRISFKGLPGSFSEDAALKAYP---KCETVPCDEFEDTFKAVELWLADKAVLPIE 149
N + V +F G G+F+E AAL P +PC + V AD A +PIE
Sbjct: 2 NAXSAVTYTFLGPQGTFTE-AALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIE 60
Query: 150 NSSSGSIHRNYDLLLR-HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDI 208
NS G + D + L I+ E + F L+A PG++ +KR+ +H A A +
Sbjct: 61 NSVEGGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRL 120
Query: 209 VLTQLGVARENVDDTASAAQ---YVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDN 265
+ + + V +++AA + + + E GLN+LA+ I D PD
Sbjct: 121 WVDEHLPNADYVPGSSTAASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDA 180
Query: 266 ITRFLVLARDPIIPRTDKLFKTSIVFTLDE-GPGVLFKALAVFALREINLTKIESRP 321
+TRF++++R +P KT++V L E PG L + L FA R +NL++IESRP
Sbjct: 181 VTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRP 237
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 13/232 (5%)
Query: 99 RISFKGLPGSFSEDAALKAYPKCETV--PCDEFEDTFKAVELWLADKAVLPIENSSSGSI 156
++ + G G+FS A + + + E P + KAV V+PIENS G+I
Sbjct: 5 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 64
Query: 157 HRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVA 216
+ D L + + GE++L NF L +K+V S A++ + + Q
Sbjct: 65 NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 124
Query: 217 RENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLARDP 276
+ VD T + + NG+ E YG + I+D P N+TRFLV+
Sbjct: 125 YDYVDSTIQSLTKI-ENGV---AAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 180
Query: 277 IIPRTDKLFKTSIVFTL---DEGPGVLFKALAVFALREINLTKIESRPQRKR 325
+ TS+ F + + PG+L L FAL INL+ IESRP + +
Sbjct: 181 QFDQN----ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQ 228
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 31/255 (12%)
Query: 93 NDGTKVRISFKGLPGSFSEDAALKAYPKC--------ETVPCDEFEDTFKAVEL---WLA 141
N + ++ + G G+F+ AA+ A + + P D+ A + W
Sbjct: 2 NAXSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLXPXDDVPQILDAAQHGDGW-- 59
Query: 142 DKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKAD--QLKRVLSH 199
++ EN+ G + N D L+ + +VG ++ N A AD + + +H
Sbjct: 60 --GIVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAH 116
Query: 200 PQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRI 259
P LA + + ++ + A+A + + + E+Y + + I
Sbjct: 117 PHGLAQCKRFIAEHRLSTQPATSNAAACRDLIPGEI----AFGPAICGELYDITRIGTAI 172
Query: 260 QDEPDNITRFLVL------ARDPIIPRTDKLFKTSIVFTLD---EGPGVLFKALAVFALR 310
QD T FLVL AR PR + + V TL GPGVL L VF
Sbjct: 173 QDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDA 232
Query: 311 EINLTKIESRPQRKR 325
+N T SRP + R
Sbjct: 233 GLNXTSFISRPIKGR 247
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 288 SIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 323
S++F+L E G L K L +F +INLT IESRP R
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR 71
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 131 DTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176
D +KAVE ++D+AV E S + + L+RH V EV+L
Sbjct: 3 DHYKAVEALISDQAVDSFETSPNPRFKQIMQSLVRHLHDFVSEVEL 48
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 104 GLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL 163
GLPG + ALK TV + E T+ A+E + D L E I R+ +
Sbjct: 121 GLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEE-- 178
Query: 164 LRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSH-------PQALASSDIVLTQLG 214
+R + I+ + N L+ PG+ + L+ P+ L IV Q+G
Sbjct: 179 IRRVIQILLR-RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,494,205
Number of Sequences: 62578
Number of extensions: 379391
Number of successful extensions: 760
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)