Query 019548
Match_columns 339
No_of_seqs 271 out of 1268
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 03:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 6.5E-81 2.2E-85 593.8 29.3 234 97-334 6-250 (283)
2 2qmw_A PDT, prephenate dehydra 100.0 1.9E-80 6.4E-85 586.1 25.7 231 96-334 2-239 (267)
3 3mwb_A Prephenate dehydratase; 100.0 5E-80 1.7E-84 594.6 26.2 239 96-334 5-252 (313)
4 3luy_A Probable chorismate mut 100.0 1.1E-76 3.6E-81 574.9 20.9 235 95-334 4-258 (329)
5 1phz_A Protein (phenylalanine 99.4 5.7E-13 1.9E-17 132.3 6.6 53 282-334 30-84 (429)
6 2d8d_A Aroag, phospho-2-dehydr 98.6 4.9E-09 1.7E-13 82.9 -0.3 61 37-97 14-87 (90)
7 3nvt_A 3-deoxy-D-arabino-heptu 98.3 2.7E-07 9.2E-12 91.0 3.5 60 14-87 30-94 (385)
8 1ecm_A Endo-oxabicyclic transi 98.2 1.4E-07 4.9E-12 77.0 -1.0 51 37-87 16-72 (109)
9 3ret_A Salicylate biosynthesis 98.1 4.5E-07 1.5E-11 73.2 1.3 50 37-87 19-74 (101)
10 3rmi_A Chorismate mutase prote 98.1 4.6E-07 1.6E-11 74.9 -0.3 51 37-87 23-79 (114)
11 2vkl_A RV0948C/MT0975; helical 98.1 7E-07 2.4E-11 70.8 0.6 43 37-79 23-70 (90)
12 1ybz_A Chorismate mutase; cons 98.0 1.3E-06 4.4E-11 69.5 0.7 41 37-77 28-73 (91)
13 2gtv_X CM, chorismate mutase; 97.9 6.4E-07 2.2E-11 73.0 -2.9 51 37-87 14-78 (104)
14 2gbb_A Putative chorismate mut 97.7 3.4E-06 1.2E-10 73.3 -1.5 48 40-87 4-57 (156)
15 2fp1_A Chorismate mutase; alph 97.6 1E-05 3.6E-10 70.9 0.1 48 40-87 7-60 (166)
16 2ko1_A CTR148A, GTP pyrophosph 96.1 0.0095 3.2E-07 44.8 5.9 40 285-324 4-43 (88)
17 1zpv_A ACT domain protein; str 95.0 0.055 1.9E-06 41.1 6.4 38 286-323 5-42 (91)
18 1wdn_A GLNBP, glutamine bindin 94.5 0.7 2.4E-05 38.7 12.9 94 97-212 109-206 (226)
19 2f1f_A Acetolactate synthase i 94.4 0.054 1.8E-06 47.1 5.6 44 286-329 3-47 (164)
20 2pc6_A Probable acetolactate s 93.7 0.082 2.8E-06 46.0 5.4 44 286-329 4-48 (165)
21 2fgc_A Acetolactate synthase, 93.5 0.12 4.2E-06 46.1 6.2 44 286-329 29-73 (193)
22 1xt8_A Putative amino-acid tra 93.0 1.2 4E-05 39.8 12.2 94 97-212 153-249 (292)
23 3h7m_A Sensor protein; histidi 93.0 1 3.5E-05 38.0 11.2 98 97-212 117-214 (234)
24 3kzg_A Arginine 3RD transport 92.9 0.72 2.5E-05 39.5 10.2 94 97-212 110-214 (237)
25 2f06_A Conserved hypothetical 92.7 0.17 5.7E-06 41.9 5.6 46 287-333 72-118 (144)
26 3mpk_A Virulence sensor protei 92.4 0.74 2.5E-05 40.7 9.9 99 97-213 139-238 (267)
27 3k4u_A Binding component of AB 92.4 0.61 2.1E-05 40.2 9.1 94 97-212 115-212 (245)
28 2f06_A Conserved hypothetical 92.3 0.15 5.1E-06 42.2 4.8 37 287-323 7-43 (144)
29 4f3p_A Glutamine-binding perip 91.9 0.85 2.9E-05 39.4 9.5 80 97-187 130-213 (249)
30 1u8s_A Glycine cleavage system 90.4 1.1 3.6E-05 38.8 8.6 37 286-322 93-129 (192)
31 3del_B Arginine binding protei 90.3 2.3 7.8E-05 36.2 10.6 93 97-212 118-216 (242)
32 3qax_A Probable ABC transporte 88.5 3.8 0.00013 35.2 10.8 93 97-212 139-237 (268)
33 3i6v_A Periplasmic His/Glu/Gln 88.5 4.5 0.00015 34.6 11.1 90 99-212 108-201 (232)
34 4i62_A Amino acid ABC transpor 88.3 0.82 2.8E-05 39.6 6.3 49 97-147 150-198 (269)
35 4dz1_A DALS D-alanine transpor 88.0 1.9 6.5E-05 37.7 8.5 80 97-187 137-225 (259)
36 2y7i_A STM4351; arginine-bindi 88.0 0.94 3.2E-05 38.1 6.3 49 97-147 112-160 (229)
37 3tql_A Arginine-binding protei 87.3 1.4 4.7E-05 36.8 6.9 49 97-147 109-158 (227)
38 3kbr_A Cyclohexadienyl dehydra 87.1 0.89 3E-05 38.8 5.7 49 97-147 125-173 (239)
39 4h5g_A Amino acid ABC superfam 86.9 1 3.5E-05 39.2 6.0 48 98-147 124-171 (243)
40 2yjp_A Putative ABC transporte 86.4 1.1 3.9E-05 40.1 6.2 49 97-147 164-212 (291)
41 2pfz_A Putative exported prote 86.2 16 0.00055 33.4 14.2 171 97-275 2-215 (301)
42 2vha_A Periplasmic binding tra 85.3 4.5 0.00016 35.6 9.6 49 97-147 130-182 (287)
43 2f5x_A BUGD; periplasmic bindi 84.3 1.9 6.6E-05 40.5 6.9 51 97-148 139-193 (312)
44 1lst_A Lysine, arginine, ornit 83.9 1.8 6E-05 36.7 6.0 49 97-147 111-161 (239)
45 2pfy_A Putative exported prote 83.9 22 0.00076 32.4 14.0 170 97-274 3-215 (301)
46 2pyy_A Ionotropic glutamate re 83.8 7 0.00024 32.3 9.7 77 97-186 112-192 (228)
47 2nyi_A Unknown protein; protei 83.7 1.3 4.4E-05 38.7 5.1 36 285-320 92-127 (195)
48 3ksx_A Nitrate transport prote 82.3 20 0.00069 32.4 12.9 143 94-245 27-188 (324)
49 2yln_A Putative ABC transporte 81.4 6 0.00021 35.2 8.8 48 96-147 163-210 (283)
50 3hv1_A Polar amino acid ABC up 81.1 1.7 6E-05 37.9 5.0 94 97-212 127-232 (268)
51 2vpn_A Periplasmic substrate b 81.0 34 0.0012 31.4 15.7 172 97-274 2-217 (316)
52 2pvu_A ARTJ; basic amino acid 80.9 2.4 8.1E-05 37.2 5.8 49 97-147 147-196 (272)
53 2q88_A EHUB, putative ABC tran 80.6 2.5 8.6E-05 36.4 5.8 49 97-147 124-173 (257)
54 2qpq_A Protein BUG27; alpha/be 79.6 5.4 0.00018 37.1 8.1 126 97-232 130-284 (301)
55 3un6_A Hypothetical protein sa 79.1 38 0.0013 30.9 14.9 136 96-243 52-209 (341)
56 1xs5_A 29 kDa protein, membran 76.6 42 0.0014 30.0 15.3 109 97-214 4-124 (241)
57 2hpg_A ABC transporter, peripl 75.9 17 0.00059 33.8 10.5 160 95-259 8-219 (327)
58 1ii5_A SLR1257 protein; membra 75.8 4.6 0.00016 33.7 5.9 47 97-147 116-162 (233)
59 4eq9_A ABC transporter substra 75.6 18 0.00061 30.4 9.7 49 97-147 115-169 (246)
60 2ozz_A Hypothetical protein YH 74.4 30 0.001 31.2 11.2 113 117-242 40-161 (231)
61 2re1_A Aspartokinase, alpha an 73.2 4.1 0.00014 34.4 4.9 48 286-333 25-75 (167)
62 2x26_A Periplasmic aliphatic s 72.6 45 0.0016 29.5 12.1 139 96-244 3-160 (308)
63 2xwv_A Sialic acid-binding per 71.1 63 0.0022 29.6 15.9 173 97-274 4-220 (312)
64 2v25_A Major cell-binding fact 70.3 4.1 0.00014 34.7 4.3 49 97-147 148-200 (259)
65 2dtj_A Aspartokinase; protein- 67.7 5.1 0.00018 34.3 4.3 33 286-318 15-48 (178)
66 3jv9_A OXYR, transcriptional r 67.5 47 0.0016 26.7 11.9 144 95-248 3-164 (219)
67 3mpk_A Virulence sensor protei 67.1 37 0.0013 29.3 10.1 113 121-249 73-193 (267)
68 1ixc_A CBNR, LYSR-type regulat 65.9 65 0.0022 27.7 12.1 144 94-247 89-247 (294)
69 3i6v_A Periplasmic His/Glu/Gln 64.8 15 0.00053 31.1 6.9 112 120-249 45-158 (232)
70 4go7_X Aspartokinase; transfer 64.5 6.1 0.00021 35.0 4.2 35 286-320 35-70 (200)
71 2zzv_A ABC transporter, solute 64.2 63 0.0022 30.1 11.6 133 96-233 34-210 (361)
72 3uif_A Sulfonate ABC transport 62.5 91 0.0031 28.3 13.8 115 121-245 46-175 (348)
73 3ix1_A N-formyl-4-amino-5-amin 62.4 57 0.002 28.8 10.5 88 121-215 36-130 (302)
74 3tql_A Arginine-binding protei 61.5 29 0.00098 28.4 7.8 113 121-249 43-164 (227)
75 2pyy_A Ionotropic glutamate re 60.8 67 0.0023 26.1 13.5 114 120-249 41-164 (228)
76 3qsl_A Putative exported prote 60.2 70 0.0024 28.4 10.8 130 96-233 33-186 (346)
77 3n5l_A Binding protein compone 59.4 32 0.0011 31.5 8.4 84 96-188 115-213 (310)
78 3s1t_A Aspartokinase; ACT doma 59.1 12 0.00042 32.1 5.2 44 292-335 23-70 (181)
79 3kzg_A Arginine 3RD transport 59.1 12 0.00042 31.5 5.1 115 121-250 45-165 (237)
80 3del_B Arginine binding protei 58.8 28 0.00097 29.1 7.4 114 120-250 51-172 (242)
81 2hxr_A HTH-type transcriptiona 58.8 76 0.0026 26.2 13.9 144 95-248 29-185 (238)
82 1p99_A Hypothetical protein PG 58.7 23 0.0008 32.7 7.4 88 96-193 39-134 (295)
83 2h9b_A HTH-type transcriptiona 58.7 95 0.0033 27.3 12.2 141 97-247 91-248 (312)
84 3n0v_A Formyltetrahydrofolate 57.5 16 0.00056 33.9 6.0 35 286-320 8-42 (286)
85 3lou_A Formyltetrahydrofolate 57.5 17 0.00057 34.0 6.1 35 286-320 10-44 (292)
86 2dvz_A BUGE, putative exported 57.0 18 0.00061 33.8 6.3 67 97-172 143-213 (314)
87 2dt9_A Aspartokinase; protein- 56.5 6.2 0.00021 33.2 2.7 46 286-334 97-143 (167)
88 3qsl_A Putative exported prote 56.0 12 0.00041 33.6 4.8 49 98-147 139-194 (346)
89 3o1l_A Formyltetrahydrofolate 55.8 21 0.00071 33.6 6.5 37 286-322 22-58 (302)
90 3ho7_A OXYR; beta-alpha-barrel 55.4 38 0.0013 27.8 7.5 144 95-248 10-167 (232)
91 3nrb_A Formyltetrahydrofolate 55.3 20 0.0007 33.3 6.3 36 286-321 7-42 (287)
92 2dt9_A Aspartokinase; protein- 54.9 7.1 0.00024 32.9 2.8 48 286-333 16-68 (167)
93 3qax_A Probable ABC transporte 54.5 83 0.0028 26.4 9.8 113 121-250 72-193 (268)
94 2iee_A ORF2, probable ABC tran 54.1 28 0.00094 30.3 6.7 46 97-147 132-179 (271)
95 2re1_A Aspartokinase, alpha an 53.6 9.9 0.00034 32.0 3.6 38 293-333 113-150 (167)
96 1ii5_A SLR1257 protein; membra 53.0 93 0.0032 25.4 13.1 114 120-249 45-168 (233)
97 4i62_A Amino acid ABC transpor 52.2 41 0.0014 28.5 7.4 114 120-249 82-204 (269)
98 2y7p_A LYSR-type regulatory pr 52.1 32 0.0011 28.7 6.6 121 117-248 33-162 (218)
99 3hn0_A Nitrate transport prote 51.6 14 0.00049 33.3 4.5 50 97-147 96-150 (283)
100 3p7i_A PHND, subunit of alkylp 51.5 23 0.00079 32.8 6.1 82 97-187 126-221 (321)
101 3h7m_A Sensor protein; histidi 51.0 1E+02 0.0034 25.2 10.4 112 120-248 51-170 (234)
102 4ddd_A Immunogenic protein; ss 50.4 20 0.00069 33.2 5.5 51 97-148 146-203 (327)
103 3mtj_A Homoserine dehydrogenas 49.9 21 0.00073 35.3 5.8 47 286-332 357-407 (444)
104 1uth_A LYSR-type regulatory pr 49.8 24 0.00084 31.4 5.8 122 117-249 130-260 (315)
105 1ygy_A PGDH, D-3-phosphoglycer 49.8 16 0.00054 36.7 4.9 39 286-324 454-493 (529)
106 1zbm_A Hypothetical protein AF 49.4 22 0.00074 31.4 5.3 51 96-148 102-152 (280)
107 3oxn_A Putative transcriptiona 48.9 56 0.0019 27.2 7.7 144 94-249 17-173 (241)
108 4f3p_A Glutamine-binding perip 47.8 1E+02 0.0034 25.9 9.2 113 120-249 63-184 (249)
109 4ddd_A Immunogenic protein; ss 46.1 1.7E+02 0.0059 26.7 11.2 133 95-233 31-194 (327)
110 3p96_A Phosphoserine phosphata 45.9 22 0.00076 33.8 5.1 38 286-323 12-49 (415)
111 3onm_A Transcriptional regulat 45.6 1.3E+02 0.0044 24.9 14.1 135 93-247 24-171 (238)
112 3uif_A Sulfonate ABC transport 45.1 19 0.00063 33.1 4.3 48 97-147 119-173 (348)
113 2pvu_A ARTJ; basic amino acid 44.8 66 0.0023 27.6 7.7 114 120-249 81-202 (272)
114 2rc8_A Glutamate [NMDA] recept 44.8 33 0.0011 30.5 5.8 80 97-187 170-259 (294)
115 2dtj_A Aspartokinase; protein- 44.5 16 0.00056 31.1 3.5 46 286-334 97-143 (178)
116 3s1t_A Aspartokinase; ACT doma 44.1 17 0.00057 31.3 3.5 46 286-334 98-144 (181)
117 4ef1_A Pheromone COB1/lipoprot 43.7 1.9E+02 0.0064 26.2 12.3 109 96-214 4-125 (246)
118 2h98_A HTH-type transcriptiona 43.0 1.8E+02 0.006 25.7 13.1 141 97-247 91-248 (313)
119 4ab5_A Transcriptional regulat 42.3 1.3E+02 0.0045 24.1 11.6 137 95-249 7-163 (222)
120 2ql3_A Probable transcriptiona 42.0 1.3E+02 0.0045 24.0 12.2 139 96-244 5-156 (209)
121 3fzv_A Probable transcriptiona 42.0 78 0.0027 27.4 7.8 140 95-244 94-246 (306)
122 4dz1_A DALS D-alanine transpor 41.1 1.6E+02 0.0056 24.9 10.1 114 121-249 70-197 (259)
123 3mah_A Aspartokinase; aspartat 40.4 15 0.00051 30.6 2.5 39 293-334 28-66 (157)
124 4gvo_A LMO2349 protein; struct 40.3 1.7E+02 0.0057 24.7 9.7 79 97-186 118-204 (243)
125 2x7q_A Ca3427, possible thiami 39.2 2.1E+02 0.0072 25.5 12.5 131 95-233 14-165 (321)
126 4esw_A Pyrimidine biosynthesis 36.7 1.3E+02 0.0044 27.3 8.7 87 121-215 40-134 (342)
127 3kbr_A Cyclohexadienyl dehydra 36.0 22 0.00076 29.7 3.0 113 121-250 56-180 (239)
128 3k5p_A D-3-phosphoglycerate de 35.2 61 0.0021 31.7 6.4 44 286-331 343-386 (416)
129 3hv1_A Polar amino acid ABC up 35.1 13 0.00045 32.1 1.4 113 121-249 62-188 (268)
130 3hn0_A Nitrate transport prote 35.0 2.4E+02 0.0082 25.0 12.7 138 96-246 5-154 (283)
131 3k4u_A Binding component of AB 34.8 77 0.0026 26.5 6.3 112 121-249 46-169 (245)
132 3k2d_A ABC-type metal ION tran 34.7 1.2E+02 0.0041 27.4 7.8 149 95-257 5-189 (237)
133 3ab4_A Aspartokinase; aspartat 33.9 37 0.0013 32.9 4.6 111 216-333 191-316 (421)
134 1ve4_A ATP phosphoribosyltrans 33.0 1.5E+02 0.0052 26.2 8.0 140 96-256 4-170 (206)
135 1sc6_A PGDH, D-3-phosphoglycer 32.9 59 0.002 31.5 5.8 36 286-321 331-366 (404)
136 3ksx_A Nitrate transport prote 32.7 56 0.0019 29.3 5.4 48 97-147 131-185 (324)
137 2fyi_A HTH-type transcriptiona 32.7 2E+02 0.0069 23.4 11.2 121 116-246 38-168 (228)
138 1sw5_A Osmoprotection protein 32.3 1.1E+02 0.0038 27.2 7.3 137 121-258 36-207 (275)
139 3tvi_A Aspartokinase; structur 31.4 98 0.0033 30.4 7.2 110 215-333 224-345 (446)
140 2x26_A Periplasmic aliphatic s 31.1 55 0.0019 28.9 5.0 47 98-147 106-159 (308)
141 1r9l_A Glycine betaine-binding 30.9 3E+02 0.01 24.9 10.5 160 96-259 8-210 (309)
142 2esn_A Probable transcriptiona 30.8 2.6E+02 0.0088 24.1 10.9 122 117-249 126-259 (310)
143 4eq9_A ABC transporter substra 30.6 1.9E+02 0.0064 23.7 8.1 114 121-249 49-175 (246)
144 3cg4_A Response regulator rece 30.3 1.1E+02 0.0038 23.0 6.1 110 196-307 13-124 (142)
145 1tdj_A Biosynthetic threonine 29.8 48 0.0017 33.3 4.7 35 289-324 436-470 (514)
146 3lte_A Response regulator; str 29.5 56 0.0019 24.4 4.1 77 196-275 12-89 (132)
147 2yjp_A Putative ABC transporte 29.3 96 0.0033 27.1 6.2 113 121-249 99-218 (291)
148 1z7m_E ATP phosphoribosyltrans 29.0 1.6E+02 0.0056 25.9 7.6 112 128-256 50-172 (208)
149 3eod_A Protein HNR; response r 28.7 87 0.003 23.3 5.1 77 196-276 13-89 (130)
150 2czl_A Hypothetical protein TT 28.4 75 0.0026 27.6 5.3 50 96-147 95-144 (272)
151 3tqw_A Methionine-binding prot 27.4 2.6E+02 0.0088 25.2 8.7 110 96-214 3-125 (240)
152 3kht_A Response regulator; PSI 27.1 79 0.0027 24.1 4.7 109 196-309 11-127 (144)
153 3l76_A Aspartokinase; alloster 27.0 50 0.0017 33.8 4.3 37 285-321 443-480 (600)
154 3i42_A Response regulator rece 25.5 50 0.0017 24.6 3.1 107 198-308 11-120 (127)
155 4ib2_A Putative lipoprotein; p 25.3 1.9E+02 0.0066 26.2 7.5 109 96-214 11-132 (252)
156 3gzg_A Molybdate-binding perip 24.7 72 0.0025 28.3 4.5 50 98-148 133-191 (253)
157 1atg_A MODA, periplasmic molyb 24.6 79 0.0027 25.8 4.5 50 99-148 106-165 (231)
158 2a5s_A N-methyl-D-aspartate re 24.4 49 0.0017 29.2 3.3 48 98-147 162-213 (284)
159 2hzl_A Trap-T family sorbitol/ 24.0 43 0.0015 31.3 2.9 121 96-220 32-196 (365)
160 4go7_X Aspartokinase; transfer 23.9 62 0.0021 28.4 3.8 46 286-334 117-163 (200)
161 3grc_A Sensor protein, kinase; 23.8 49 0.0017 25.2 2.8 109 196-308 12-125 (140)
162 3fxq_A LYSR type regulator of 23.7 3.5E+02 0.012 23.2 12.3 120 117-248 117-248 (305)
163 3r26_A Molybdate-binding perip 23.6 63 0.0022 28.0 3.8 50 97-147 116-174 (237)
164 3gl9_A Response regulator; bet 23.6 66 0.0022 24.1 3.5 75 198-275 10-85 (122)
165 2vd2_A ATP phosphoribosyltrans 23.4 1.6E+02 0.0054 26.2 6.4 142 96-256 4-174 (214)
166 1tdj_A Biosynthetic threonine 23.2 66 0.0023 32.4 4.3 35 286-322 338-372 (514)
167 1xt8_A Putative amino-acid tra 23.0 3E+02 0.01 23.6 8.3 114 120-249 87-207 (292)
168 2j48_A Two-component sensor ki 22.9 58 0.002 23.3 3.0 76 198-276 9-85 (119)
169 3gxa_A Outer membrane lipoprot 22.9 91 0.0031 28.9 4.9 111 95-214 22-145 (275)
170 2vha_A Periplasmic binding tra 22.5 3.6E+02 0.012 22.9 10.4 115 121-249 65-188 (287)
171 3ab4_A Aspartokinase; aspartat 22.3 44 0.0015 32.3 2.7 39 293-334 354-392 (421)
172 3fxb_A Trap dicarboxylate tran 21.5 81 0.0028 29.1 4.3 161 95-260 14-216 (326)
173 2v25_A Major cell-binding fact 21.5 3.4E+02 0.012 22.2 9.3 114 121-249 83-206 (259)
174 2b4a_A BH3024; flavodoxin-like 20.4 2.3E+02 0.0078 21.1 6.2 106 195-306 20-127 (138)
175 3cnb_A DNA-binding response re 20.1 1.1E+02 0.0039 22.8 4.3 112 196-310 14-130 (143)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=6.5e-81 Score=593.77 Aligned_cols=234 Identities=46% Similarity=0.676 Sum_probs=222.8
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (339)
+++||||||+|||||+||+++| +++||+||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 4689999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCcee
Q 019548 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNIL 255 (339)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il 255 (339)
||+|||++++|.++++|++||||||||+||++||+++ +++.++++|||+||++++++++++.|||||+.||++|||+||
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il 162 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDIL 162 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCcee
Confidence 9999999999999999999999999999999999997 899999999999999999987788999999999999999999
Q ss_pred eccccCCCCCeeeEEEEeeCCCC--------CCCCCCceEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCc
Q 019548 256 ADRIQDEPDNITRFLVLARDPII--------PRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPL 327 (339)
Q Consensus 256 ~~~IeD~~~N~TRF~vi~~~~~~--------p~~~~~~Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w 327 (339)
+++|||.++|+|||+||++++.. +. .+.+||||+|+++|+||+|+++|++|+++|||||||||||+++++|
T Consensus 163 ~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~ 241 (283)
T 2qmx_A 163 KENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAF 241 (283)
T ss_dssp ESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTT
T ss_pred cccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCc
Confidence 99999999999999999998754 22 2257999999999999999999999999999999999999999999
Q ss_pred eE--EEecC
Q 019548 328 RV--VDDSN 334 (339)
Q Consensus 328 ~~--~~~~~ 334 (339)
+| |||+.
T Consensus 242 ~Y~FfvD~e 250 (283)
T 2qmx_A 242 EYLFYADFI 250 (283)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEe
Confidence 88 67765
No 2
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=1.9e-80 Score=586.11 Aligned_cols=231 Identities=29% Similarity=0.386 Sum_probs=219.2
Q ss_pred CceEEEEECCCCcHHHHHHHHhCCCCc--cccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEE
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYPKCE--TVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGE 173 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg~~~--~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gE 173 (339)
.+++||||||+|||||+||+++|++.+ ++||+||+|||++|++|++||||||||||++|+|.+|||+|.+++++|+||
T Consensus 2 ~~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE 81 (267)
T 2qmw_A 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGE 81 (267)
T ss_dssp --CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEE
T ss_pred CccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEE
Confidence 578999999999999999999999754 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCc
Q 019548 174 VQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLN 253 (339)
Q Consensus 174 i~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~ 253 (339)
+.+||+|||++++|.++++|++||||||||+||++||++++++.++++|||+||+++++ + .|||||+.||++|||+
T Consensus 82 ~~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~ 157 (267)
T 2qmw_A 82 IRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFT 157 (267)
T ss_dssp EEEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCC
T ss_pred EEEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCc
Confidence 99999999999999899999999999999999999999988999999999999999986 3 8999999999999999
Q ss_pred eeeccccCCCCCeeeEEEEeeCCCCCCCCCCceEEEEEEe---cCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceE-
Q 019548 254 ILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTL---DEGPGVLFKALAVFALREINLTKIESRPQRKRPLRV- 329 (339)
Q Consensus 254 il~~~IeD~~~N~TRF~vi~~~~~~p~~~~~~Ktsi~~~~---~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~- 329 (339)
||+++|||+++|+|||+||+++. .+ . .+||||+|++ +|+||+|+++|++|+++|||||||||||+++++|+|
T Consensus 158 il~~~I~D~~~N~TRF~vl~~~~-~~-~--~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~ 233 (267)
T 2qmw_A 158 PIDTHIEDYPHNVTRFLVIKNQQ-QF-D--QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYR 233 (267)
T ss_dssp EEEECCCSCSCCEEEEEEEESCC-CC-C--SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEE
T ss_pred EeeccccCCCCCceEEEEEecCC-CC-C--CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEE
Confidence 99999999999999999999987 33 2 5799999999 899999999999999999999999999999999988
Q ss_pred -EEecC
Q 019548 330 -VDDSN 334 (339)
Q Consensus 330 -~~~~~ 334 (339)
|||..
T Consensus 234 FfiD~e 239 (267)
T 2qmw_A 234 FFVQAD 239 (267)
T ss_dssp EEEEES
T ss_pred EEEEEe
Confidence 67765
No 3
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=5e-80 Score=594.56 Aligned_cols=239 Identities=29% Similarity=0.459 Sum_probs=222.5
Q ss_pred CceEEEEECCCCcHHHHHHHHhCC--CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcC-CeEEEE
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYP--KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH-RLHIVG 172 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg--~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~-~l~I~g 172 (339)
..++||||||+|||||+||+++|+ +.+++||+||+|||++|++|++||||||||||++|+|.+|||+|.++ +|+|+|
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~Ivg 84 (313)
T 3mwb_A 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIR 84 (313)
T ss_dssp --CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEE
T ss_pred cccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEE
Confidence 357999999999999999999984 47899999999999999999999999999999999999999999985 799999
Q ss_pred EEEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHc
Q 019548 173 EVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (339)
Q Consensus 173 Ei~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~y 250 (339)
|+.+||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||+++++++++..|||||+.||++|
T Consensus 85 E~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Y 164 (313)
T 3mwb_A 85 EALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQ 164 (313)
T ss_dssp EEEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHC
T ss_pred EEEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHc
Confidence 99999999999999999999999999999999999999986 7899999999999999998766688999999999999
Q ss_pred C-CceeeccccCCCCCeeeEEEEeeCCCCCCCCCCceEEEEEEec-CCcchHHHHHHHHHhCCceeeeeeeeeCCCCCce
Q 019548 251 G-LNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLD-EGPGVLFKALAVFALREINLTKIESRPQRKRPLR 328 (339)
Q Consensus 251 g-L~il~~~IeD~~~N~TRF~vi~~~~~~p~~~~~~Ktsi~~~~~-~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~ 328 (339)
| |+||+++|||.++|+|||+||+++...+...+.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++++|+
T Consensus 165 g~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~ 244 (313)
T 3mwb_A 165 PGLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGH 244 (313)
T ss_dssp TTCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTS
T ss_pred CChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCcc
Confidence 9 9999999999999999999999987544444568999999997 9999999999999999999999999999999998
Q ss_pred E--EEecC
Q 019548 329 V--VDDSN 334 (339)
Q Consensus 329 ~--~~~~~ 334 (339)
| |||..
T Consensus 245 Y~FfiD~e 252 (313)
T 3mwb_A 245 YFFSIDAD 252 (313)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 6 56653
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=1.1e-76 Score=574.90 Aligned_cols=235 Identities=23% Similarity=0.329 Sum_probs=214.5
Q ss_pred CCceEEEEECCCCcHHHHHHHHhCC--------CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcC
Q 019548 95 GTKVRISFKGLPGSFSEDAALKAYP--------KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH 166 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS~~AA~~~fg--------~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~ 166 (339)
..+++||||||+|||||+||+++|+ +.+++||+||+|||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 4 ~~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~ 82 (329)
T 3luy_A 4 MSARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDA 82 (329)
T ss_dssp CCCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTC
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhcc
Confidence 3578999999999999999999752 468899999999999999999 9999999999999999999999885
Q ss_pred -CeEEEEEEEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHH
Q 019548 167 -RLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASAR 245 (339)
Q Consensus 167 -~l~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~ 245 (339)
+|+|+||+.+||+|||++.+|.++++|++||||||||+||++||++++++.+++.|||+||+.++ ++.|||||+.
T Consensus 83 ~~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~----~~~AAIas~~ 158 (329)
T 3luy_A 83 KDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAI 158 (329)
T ss_dssp SSCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCC----TTEEEEECTT
T ss_pred CCcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhC----CCCceeCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999875 3689999999
Q ss_pred HHHHcCCceeeccccCCCCCeeeEEEEeeCCCC------CCC-CCCceEEEEEEec--CCcchHHHHHHHHHhCCceeee
Q 019548 246 AAEIYGLNILADRIQDEPDNITRFLVLARDPII------PRT-DKLFKTSIVFTLD--EGPGVLFKALAVFALREINLTK 316 (339)
Q Consensus 246 AA~~ygL~il~~~IeD~~~N~TRF~vi~~~~~~------p~~-~~~~Ktsi~~~~~--~~pGaL~~iL~~Fa~~gINLtk 316 (339)
||++|||+||+++|||+++|+|||+||+++... +.. ...+|||++|.++ |+||+|+++|++|+.+||||||
T Consensus 159 AAelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtk 238 (329)
T 3luy_A 159 CGELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTS 238 (329)
T ss_dssp HHHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEE
T ss_pred HHHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEE
Confidence 999999999999999999999999999987542 111 1236899888876 5899999999999999999999
Q ss_pred eeeeeCCCCCceE--EEecC
Q 019548 317 IESRPQRKRPLRV--VDDSN 334 (339)
Q Consensus 317 IeSRP~~~~~w~~--~~~~~ 334 (339)
|||||+++++|+| |||..
T Consensus 239 IESRP~~~~~~~Y~FfiD~e 258 (329)
T 3luy_A 239 FISRPIKGRTGTYSFIVTLD 258 (329)
T ss_dssp EEEEEETTEEEEEEEEEEES
T ss_pred EEeeECCCCCccEEEEEEEe
Confidence 9999999999997 56654
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.35 E-value=5.7e-13 Score=132.26 Aligned_cols=53 Identities=36% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCCceEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceE--EEecC
Q 019548 282 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRV--VDDSN 334 (339)
Q Consensus 282 ~~~~Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~--~~~~~ 334 (339)
++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++++|+| |||+.
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 346799999999999999999999999999999999999999999987 66765
No 6
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=98.59 E-value=4.9e-09 Score=82.92 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhCCCCCCccc-------cc-cccCCCCc
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPKPLTVAD-------FT-VTPNDGTK 97 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n~GPL~~e~-------i~-~s~~l~~~ 97 (339)
.+|.+|++||++|+.++.+||++|...| + | ||+++|.++...++++|+.+. || .|+.+|.+
T Consensus 14 ~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~~i~dp~RE~~vl~~~~~~~~~~l~~~~i~~if~~ii~~s~~~q~~ 87 (90)
T 2d8d_A 14 RVNREILRLLSERGRLVQEIGRLQTELGLPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASLDLEER 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999998877 3 5 999999999999999999875 34 45555543
No 7
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=98.29 E-value=2.7e-07 Score=90.99 Aligned_cols=60 Identities=7% Similarity=-0.111 Sum_probs=50.0
Q ss_pred CCCCccCceeccccCCCCCCCcccchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhCCCCCCccc
Q 019548 14 SGSRASGLVFNGVRNSNRTPRKCVCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPKPLTVAD 87 (339)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n~GPL~~e~ 87 (339)
+..-|.+|| -+|.||++||+||++++++||++|.+.| + | ||+++|+++...++++|+.+.
T Consensus 30 L~~lR~~ID--------------~ID~~il~LL~eR~~~~~~Va~~K~~~g~~i~dp~RE~~vl~~~~~~~~~~l~~~~ 94 (385)
T 3nvt_A 30 LEELRTQVD--------------QLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNTILAANEGPFEDST 94 (385)
T ss_dssp --CCTTTTT--------------HHHHHHHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHCCSSSCHHH
T ss_pred HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHhccCCCCHHH
Confidence 445677777 8999999999999999999999999887 3 5 999999999999999999874
No 8
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=98.18 E-value=1.4e-07 Score=76.97 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhh-CCCCCCccc
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLIS-LPKPLTVAD 87 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~-n~GPL~~e~ 87 (339)
-+|.+|++||++|+.++.+||++|...| + | ||+++|.++... ++++|+.+.
T Consensus 16 ~iD~~L~~LL~~R~~~~~~v~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 72 (109)
T 1ecm_A 16 ALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHY 72 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhHhCCCCHHH
Confidence 7899999999999999999999998877 3 5 999999999886 778888764
No 9
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=98.15 E-value=4.5e-07 Score=73.20 Aligned_cols=50 Identities=10% Similarity=-0.108 Sum_probs=44.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhh-CCCCCCccc
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLIS-LPKPLTVAD 87 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~-n~GPL~~e~ 87 (339)
.+|.+|++||++|+.++.+||++|.. | + | ||++||.++... +.++|+.+.
T Consensus 19 ~iD~~il~LL~~R~~~~~~i~~~K~~-~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 74 (101)
T 3ret_A 19 RIDLDIVQALGRRMDYVKAASRFEAS-EAAIPAPERVAAMLPERARWAEENGLDAPF 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCSS-GGGTTCHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHhhhCCCCHHH
Confidence 78999999999999999999999998 7 3 5 999999999886 457788764
No 10
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=98.06 E-value=4.6e-07 Score=74.91 Aligned_cols=51 Identities=2% Similarity=-0.232 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhC-CCCCCccc
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISL-PKPLTVAD 87 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n-~GPL~~e~ 87 (339)
.+|.+|++||++|+.++.+||++|...| + | ||++||.++.... .++|+.+.
T Consensus 23 ~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~~l~~~~ 79 (114)
T 3rmi_A 23 NFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRLRKLAIDTHFDPDF 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 7899999999999999999999999887 3 5 9999999998875 78887764
No 11
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=98.05 E-value=7e-07 Score=70.84 Aligned_cols=43 Identities=7% Similarity=-0.206 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhC
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISL 79 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n 79 (339)
.+|.+|++||++|+.++++||++|...| + | ||+++|.++...+
T Consensus 23 ~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a 70 (90)
T 2vkl_A 23 RLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELG 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHc
Confidence 7899999999999999999999998766 3 5 9999999998866
No 12
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=97.97 E-value=1.3e-06 Score=69.51 Aligned_cols=41 Identities=10% Similarity=-0.076 Sum_probs=37.6
Q ss_pred cchhhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhh
Q 019548 37 VCRGGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLI 77 (339)
Q Consensus 37 ~~~~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~ 77 (339)
-+|.+|++||++|++++++||++|...| + | ||+++|.++..
T Consensus 28 ~ID~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~ 73 (91)
T 1ybz_A 28 KIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGE 73 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHH
Confidence 7899999999999999999999998877 3 5 99999999866
No 13
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=97.86 E-value=6.4e-07 Score=72.98 Aligned_cols=51 Identities=4% Similarity=-0.186 Sum_probs=46.2
Q ss_pred cchhhHH--------HHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhCCC-CCCccc
Q 019548 37 VCRGGFS--------GLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPK-PLTVAD 87 (339)
Q Consensus 37 ~~~~~Il--------~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n~G-PL~~e~ 87 (339)
-+|.+|+ +||++|+.++.+||++|...| + | ||++||.++...+++ +++.+.
T Consensus 14 ~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~ 78 (104)
T 2gtv_X 14 EIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENI 78 (104)
T ss_dssp HHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHH
Confidence 7899999 999999999999999998877 3 5 999999999998888 888764
No 14
>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}
Probab=97.67 E-value=3.4e-06 Score=73.34 Aligned_cols=48 Identities=8% Similarity=0.046 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhCCC-CCCccc
Q 019548 40 GGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLPK-PLTVAD 87 (339)
Q Consensus 40 ~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n~G-PL~~e~ 87 (339)
.+|++||++|++++.+||++|.+.| + | ||++||.++...+++ +|+.+.
T Consensus 4 ~qLl~LL~eR~~la~~Va~~K~~~g~pI~Dp~RE~evL~~l~~~a~~~gL~~~~ 57 (156)
T 2gbb_A 4 GQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGES 57 (156)
T ss_dssp SCSHHHHHHHHTTHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHTTBCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHhhcCCCCHHH
Confidence 4799999999999999999998877 3 5 999999999999888 888765
No 15
>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*
Probab=97.57 E-value=1e-05 Score=70.93 Aligned_cols=48 Identities=6% Similarity=-0.041 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHhhhcCCCCC--C--C-chhHHHHHhhhhCC-CCCCccc
Q 019548 40 GGFSGLSGDSVIKSADNQNTGKSSN--V--N-DVPGKLCKDLISLP-KPLTVAD 87 (339)
Q Consensus 40 ~~Il~LlneRa~la~eIg~~K~~~~--~--~-RE~~il~~~~~~n~-GPL~~e~ 87 (339)
.+|++||+||++++++||++|.+.| + | ||++||.++...+. ++|+.+.
T Consensus 7 ~~Lv~LLaeR~~la~~Va~~K~~~~~pI~dp~RE~eVL~r~~~~a~~~gL~~~~ 60 (166)
T 2fp1_A 7 AELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDY 60 (166)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhCCCCHHH
Confidence 6899999999999999999998876 4 4 99999999999877 6888764
No 16
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.15 E-value=0.0095 Score=44.81 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=35.6
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCC
Q 019548 285 FKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324 (339)
Q Consensus 285 ~Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~ 324 (339)
..+.|.+..+|+||.|.++.+.|++.|+|+..+...+..+
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 3567778889999999999999999999999999987654
No 17
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=94.98 E-value=0.055 Score=41.07 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=33.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 323 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~ 323 (339)
+..|.+..+|+||.|.++.+.|+++|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677888999999999999999999999999887654
No 18
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=94.51 E-value=0.7 Score=38.66 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHH-hhc---CCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL-LLR---HRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDl-L~~---~~l~I~g 172 (339)
..+|++ +.|+..+....+.++..+++.+.+.++++++|.+|++|+.+.+- .++.. +.+ .++.+.+
T Consensus 109 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~---------~~~~~~~~~~~~~~l~~~~ 177 (226)
T 1wdn_A 109 GKVVAV--KSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDT---------PNILYFIKTAGNGQFKAVG 177 (226)
T ss_dssp TCEEEE--ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEH---------HHHHHHHHTTTTTTEEEEE
T ss_pred CCEEEE--EcCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCc---------HHHHHHHHhCCCCceEEec
Confidence 468988 46777777777777777888999999999999999999988762 22222 222 3577777
Q ss_pred EEEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 173 EVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 173 Ei~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
....+...+++..++ +|+-..+-.++|.+
T Consensus 178 ~~~~~~~~~~~~~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 178 DSLEAQQYGIAFPKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp EEEEEEEEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcccCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 665566666666543 34555556666654
No 19
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=94.40 E-value=0.054 Score=47.09 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=37.0
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCC-CCceE
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRV 329 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~-~~w~~ 329 (339)
+-.|.+.+.|+||.|.++.+.|+++|+|+..+...|+.+ +..++
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sri 47 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRM 47 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEE
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEE
Confidence 345667789999999999999999999999999999875 33444
No 20
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=93.72 E-value=0.082 Score=46.00 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=37.5
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCC-CCceE
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRV 329 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~-~~w~~ 329 (339)
|-.|.+.+.|+||.|.++.+.|+++|+|+..+...|+.+ +..++
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sri 48 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRM 48 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEE
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEE
Confidence 456777889999999999999999999999999999874 44444
No 21
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=93.48 E-value=0.12 Score=46.08 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=37.3
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCC-CCceE
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRV 329 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~-~~w~~ 329 (339)
|-.|.+.++|+||.|.++.+.|+++|+|+..|-.-|+.+ ...++
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRi 73 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRL 73 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEE
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEE
Confidence 456777789999999999999999999999999988876 34455
No 22
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=92.98 E-value=1.2 Score=39.83 Aligned_cols=94 Identities=12% Similarity=0.038 Sum_probs=64.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHH-hhc-CCeEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL-LLR-HRLHIVGEV 174 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDl-L~~-~~l~I~gEi 174 (339)
..+|++ +.|+..+....+.+++.+++++.+.++++++|.+|++|+++..- .++.. +.+ .++.+.+..
T Consensus 153 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~---------~~~~~~~~~~~~l~~~~~~ 221 (292)
T 1xt8_A 153 DKTLLL--NKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDN---------TLLFAWVKDHPDFKMGIKE 221 (292)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHHHCTTEEEEEEE
T ss_pred CCEEEE--eCCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecH---------HHHHHHHHhCCCeEEcccc
Confidence 468988 47888877777777777889999999999999999999998752 22222 222 247777765
Q ss_pred EEeeee-eeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 175 QLAANF-CLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 175 ~l~I~h-~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
.-+..+ +++..++ +|+-...-.++|.+
T Consensus 222 ~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 222 LGNKDVIAPAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp EEEEEEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred cccCceeEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 555555 5554432 35555666666655
No 23
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=92.98 E-value=1 Score=37.95 Aligned_cols=98 Identities=12% Similarity=-0.023 Sum_probs=64.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (339)
..+|++. .|+..+....+.+.+.+++.+++.++++++|.+|++|+.+.+-. .....+.-....++.+.+....
T Consensus 117 g~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3h7m_A 117 GRKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV-----PGMYIIRENRLTNLVPVARSIA 189 (234)
T ss_dssp TSCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH-----HHHHHHHHTTCTTEEEEEEEEE
T ss_pred CCEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH-----HHHHHHHhcCCCceEEeccccC
Confidence 4588885 57766666565555678899999999999999999999987521 0111111111235788877766
Q ss_pred eeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 177 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 177 ~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
+...+++..++ +|+-..+-.++|.+
T Consensus 190 ~~~~~~~~~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 190 AQRYGYAVRQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp EEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCceEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 66666665542 45555666666654
No 24
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=92.87 E-value=0.72 Score=39.48 Aligned_cols=94 Identities=10% Similarity=0.209 Sum_probs=62.6
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-c---------C
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-R---------H 166 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~---------~ 166 (339)
..+||+. .|+..+....+.++..+++.+.+.++++++|.+|++|+.+..- .++..+. + .
T Consensus 110 g~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~---------~~~~~~~~~~~~~~~~l~~ 178 (237)
T 3kzg_A 110 GKKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDY---------EAAKYWMASEPYAYKLIGK 178 (237)
T ss_dssp TCEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHTTSSTTHHHHCC
T ss_pred CCEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCc---------HHHHHHHHhCCccccccCC
Confidence 3688885 5666555555677778899999999999999999999988752 2222222 2 2
Q ss_pred CeEEEEEEE-EeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 167 RLHIVGEVQ-LAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 167 ~l~I~gEi~-l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
++.+.+... .+...+++..++ +|+-..+-.++|.+
T Consensus 179 ~l~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 179 KYKLIGKKISIGEGYSIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp SEEEEEEEEECTTCBCCEECGG-----------GHHHHHHHHHHHHH
T ss_pred ceEEecCccccCccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 677877644 444444444331 46666777777765
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.67 E-value=0.17 Score=41.88 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=34.5
Q ss_pred EEEE-EEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEec
Q 019548 287 TSIV-FTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDS 333 (339)
Q Consensus 287 tsi~-~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~ 333 (339)
++++ +.++|+||.|.++++.|+++|||+..+.+.+ ....-.++++.
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~ 118 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRP 118 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEe
Confidence 4544 4789999999999999999999998877765 33334444443
No 26
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.38 E-value=0.74 Score=40.66 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=65.9
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL 176 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l 176 (339)
..+||+.. |+..+....+.+++.+++.+++.++++++|.+|++|+.+.+-. . ....+.-....++.+.+....
T Consensus 139 g~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~----~~~~~~~~~~~~l~~~~~~~~ 211 (267)
T 3mpk_A 139 GRTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-S----ASYYVNRYFAGKLRIASALDL 211 (267)
T ss_dssp TCEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-H----HHHHHHHHCTTTEEEEEECSS
T ss_pred CCEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-H----HHHHHHhcCCCceEEEeccCC
Confidence 46899874 6666666667788889999999999999999999999998621 1 111111112346888877543
Q ss_pred -eeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHhc
Q 019548 177 -AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL 213 (339)
Q Consensus 177 -~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~~ 213 (339)
+...+++.+++ +|+-..+-.++|.+.
T Consensus 212 ~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 212 PPAEIALATTRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp CCEEEEEEEETT-----------CHHHHHHHHHHHHTS
T ss_pred CceeEEEEEcCC-----------CHHHHHHHHHHHHhC
Confidence 55555555442 456666677777653
No 27
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.37 E-value=0.61 Score=40.20 Aligned_cols=94 Identities=16% Similarity=0.072 Sum_probs=64.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-h---cCCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-L---RHRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~---~~~l~I~g 172 (339)
..+||+. .|+..+....+.+++.+++++++.++++++|.+|++|+.+..- .++..+ . ...+.+.+
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~---------~~~~~~~~~~~~~~~~~~~ 183 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDL---------PFNVAFMAQKGQGYLVHLD 183 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEH---------HHHHHHHHHTTTTTEEEEC
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcH---------HHHHHHHhcCCccceeecC
Confidence 5688885 6888888777788888999999999999999999999988752 122222 2 23455555
Q ss_pred EEEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 173 EVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 173 Ei~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
+...+...+++..++ +|+-..+..++|.+
T Consensus 184 ~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 184 TSLTYEPLGWAIKKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CCCSCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcccccEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 544445555554442 45555666666655
No 28
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=92.27 E-value=0.15 Score=42.18 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=30.9
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 019548 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 323 (339)
Q Consensus 287 tsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~ 323 (339)
-.|.+.++|+||.|.++++.|+++|||+..|.--+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~ 43 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA 43 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecC
Confidence 4556678999999999999999999999998654443
No 29
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=91.86 E-value=0.85 Score=39.42 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=60.0
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-c---CCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-R---HRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~---~~l~I~g 172 (339)
..+|++ +.|+..+....+.++..+++.+++.++++++|.+|++|+.+.+-. ++..+. + .++.+.+
T Consensus 130 g~~i~v--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~l~~~~ 198 (249)
T 4f3p_A 130 GKVIAA--KTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTP---------NVLFFVNNEGKGRVKVAG 198 (249)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEE
T ss_pred CCEEEE--eCCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcH---------HHHHHHHhCCCCceEEec
Confidence 468887 468777777777788888999999999999999999999998632 222222 2 4588888
Q ss_pred EEEEeeeeeeccCCC
Q 019548 173 EVQLAANFCLLALPG 187 (339)
Q Consensus 173 Ei~l~I~h~Ll~~~g 187 (339)
+...+...+++..++
T Consensus 199 ~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 199 APVSGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEEEEETT
T ss_pred CCCCCccEEEEEcCC
Confidence 877777777776654
No 30
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=90.43 E-value=1.1 Score=38.82 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=31.9
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~ 322 (339)
.+.|.+..+|+||.|+++.+.|+++|+|+..+...-.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~ 129 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI 129 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcc
Confidence 5566677899999999999999999999999877633
No 31
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=90.29 E-value=2.3 Score=36.18 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=60.5
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cC-CeEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RH-RLHIVGEV 174 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~-~l~I~gEi 174 (339)
..+|++. .|+..+....+ +++.+++.+++.++++++|.+|++|+++..- .++..+. +. .+.+.+..
T Consensus 118 g~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~---------~~~~~~~~~~~~~~~~~~~ 185 (242)
T 3del_B 118 YRSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEP---------SIAQVVLKDFPALSTATID 185 (242)
T ss_dssp SSCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECH---------HHHHHHGGGCTTEEEEEEE
T ss_pred CCEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecH---------HHHHHHHHhCCCeEEecCc
Confidence 4578874 68877776665 6778889999999999999999999998752 2333222 22 36676643
Q ss_pred EEeee----eeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 175 QLAAN----FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 175 ~l~I~----h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
.-+.. .+++..++ +|+-..+..++|.+
T Consensus 186 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 216 (242)
T 3del_B 186 LPEDQWVLGYGIGVASD-----------RPALALKIEAAVQE 216 (242)
T ss_dssp CCGGGCEEEEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccceEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 33332 34443332 45555666666655
No 32
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=88.54 E-value=3.8 Score=35.15 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=60.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHH-hhcC-CeEEEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL-LLRH-RLHIVGEV 174 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDl-L~~~-~l~I~gEi 174 (339)
..+|++ +.|+..+....+ +++.+++++++.++++++|.+|++|+++.. ..++.. +.+. ++.+.+..
T Consensus 139 g~~i~~--~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~---------~~~~~~~~~~~~~~~~~~~~ 206 (268)
T 3qax_A 139 YSSVAV--QTGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLE---------PSVGRVVLKDFPNLVATRLE 206 (268)
T ss_dssp SSCEEE--ETTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEEC---------HHHHHHHGGGCTTEEEEEEE
T ss_pred CCEEEE--ecCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEec---------HHHHHHHHHhCCCcEEecCc
Confidence 357887 467777766655 667788899999999999999999999875 223332 2332 46776644
Q ss_pred EEeee----eeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 175 QLAAN----FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 175 ~l~I~----h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
.-+.. .+++.+++ +|+-..+-.++|.+
T Consensus 207 ~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~ 237 (268)
T 3qax_A 207 LPPECWVLGCGLGVAKD-----------RPEEIQTIQQAITD 237 (268)
T ss_dssp CCGGGCBCCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred cCcccccccEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 33333 44444432 45555666666655
No 33
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=88.48 E-value=4.5 Score=34.57 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=59.6
Q ss_pred EEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHH-hhc--CCeEEEEEE-
Q 019548 99 RISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL-LLR--HRLHIVGEV- 174 (339)
Q Consensus 99 ~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDl-L~~--~~l~I~gEi- 174 (339)
+||+. .|+..+....+. +.+++++++.++++++|.+|++|+.+..-. ++.. +.+ .++.+.++.
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~~~~~~~~ 174 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---------YLVPIVAESGGELMFVGDDV 174 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTTSSEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---------HHHHHHHhCCCCeEEecCCC
Confidence 88884 688777666655 578889999999999999999999887522 2222 222 468888753
Q ss_pred EEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 175 QLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 175 ~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
..+...+++..++ +|+-..+-.++|.+
T Consensus 175 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 175 PLGGGVGMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp ECSSCEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 3334455554432 34555556666654
No 34
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=88.31 E-value=0.82 Score=39.56 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=42.0
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+.+++.+++++++.++++++|.+|++|+++.+
T Consensus 150 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 150 QKKVGA--QKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp -CEEEE--ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred CCeEEE--ecCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 468987 4688877777778888889999999999999999999999976
No 35
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=88.04 E-value=1.9 Score=37.67 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=55.4
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCC------CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHH-Hhhc--CC
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPK------CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR--HR 167 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~------~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlD-lL~~--~~ 167 (339)
..+|++ +.|+..+....+.++. .+++.+++.++++++|.+|++|+.+..-. ++. ++.+ .+
T Consensus 137 g~~v~v--~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~ 205 (259)
T 4dz1_A 137 KYSIGY--PRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEP---------VYFTFKNKKKMP 205 (259)
T ss_dssp GSCEEE--ETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHTSCCC
T ss_pred CCEEEE--eCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHhccCCCc
Confidence 358888 4688777777777654 67888999999999999999999998622 222 2222 34
Q ss_pred eEEEEEEEEeeeeeeccCCC
Q 019548 168 LHIVGEVQLAANFCLLALPG 187 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g 187 (339)
+.+.....-+...+++.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 206 IESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEEETT
T ss_pred eEeecccCCCceEEEEEeCC
Confidence 66666555555666665553
No 36
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=88.04 E-value=0.94 Score=38.15 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=41.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+.+++.+++.+.+..+++++|.+|++|+.+.+
T Consensus 112 g~~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 112 GKKVGL--ENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp TCEEEE--ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 468888 4677777766667777888999999999999999999999875
No 37
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=87.31 E-value=1.4 Score=36.84 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=39.7
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCC-CccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPK-CETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~-~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+||+. .|+..+....+.++. .+++.+.+.++++++|.+|++|+.+..
T Consensus 109 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 158 (227)
T 3tql_A 109 GKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGD 158 (227)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESC
T ss_pred CCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeC
Confidence 4688875 566666666666666 788999999999999999999998865
No 38
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=87.08 E-value=0.89 Score=38.76 Aligned_cols=49 Identities=18% Similarity=0.087 Sum_probs=42.6
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+.+++.+++.+++.++++++|.+|++|+.+..
T Consensus 125 g~~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIV--NPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEE--CTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEE--cCCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 568887 5788888877778888889999999999999999999999875
No 39
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=86.91 E-value=1 Score=39.23 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=42.1
Q ss_pred eEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 98 VRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 98 ~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
.+|+. ..|+..+....+.++..+++++++..+++++|.+|++|+.+..
T Consensus 124 ~~i~v--~~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 124 ANIAA--QKGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp SEEEE--ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CEEEe--cCCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 57877 4688888888888998899999999999999999999998864
No 40
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=86.43 E-value=1.1 Score=40.11 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=42.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+.+++.+++++.+..+++++|.+|++|+++++
T Consensus 164 gk~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 164 DQTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp TSEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 468888 5788888777777877888999999999999999999999986
No 41
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=86.24 E-value=16 Score=33.39 Aligned_cols=171 Identities=11% Similarity=0.024 Sum_probs=96.3
Q ss_pred ceEEEEECCCCcHHHHHHHHhC--------CCCccccCC-----CHHHHHHHHHhCCCCeEEEeeeccCccc--------
Q 019548 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSSSGS-------- 155 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f--------g~~~~~~~~-----si~~Vf~aV~~g~ad~gVVPiENS~~G~-------- 155 (339)
.+|+++.-|+++..++++..+- |.+++..++ +-.+++++|..|.+|++++..-.. .|.
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~-~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNF-ANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGG-TTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhhc-cccCchhhhhc
Confidence 3689999999998888776532 334443333 347999999999999999863210 000
Q ss_pred -----------------hhhhH-HHhhcCCeEEEEEEEEeeeeeeccCCC-CCcCCcc--EEEecHHHHHHHHHHHHhcC
Q 019548 156 -----------------IHRNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLG 214 (339)
Q Consensus 156 -----------------V~~tl-DlL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqal~QC~~~L~~~~ 214 (339)
..+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..|
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 01111 13345688887754444334 444332 3456665 45542 222 257888889
Q ss_pred CeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCC-eeeEEEEeeC
Q 019548 215 VARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDN-ITRFLVLARD 275 (339)
Q Consensus 215 ~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N-~TRF~vi~~~ 275 (339)
+..++.+ .++....+..+ .-.|+..+.......++.=+.+.+-+.... .+-++++.+.
T Consensus 157 a~pv~~~-~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~~ 215 (301)
T 2pfz_A 157 AQPVTVQ-QAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKK 215 (301)
T ss_dssp CEEEECC-GGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEHH
T ss_pred CcceecC-HHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcHH
Confidence 8877663 34444444443 234567777666666664444444432222 3344555543
No 42
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=85.34 E-value=4.5 Score=35.58 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=39.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhC----CCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAY----PKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f----g~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++. .|+..+.....++ .+.+++++.+.++++.+|.+|++|+++..
T Consensus 130 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~ 182 (287)
T 2vha_A 130 GKAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMD 182 (287)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeC
Confidence 3588874 7887776666554 24678899999999999999999999875
No 43
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=84.26 E-value=1.9 Score=40.50 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=40.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEee
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPI 148 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPi 148 (339)
+.+++..|+ ||-+|.++..+. | +...+|+....+++.+|..|++|.++...
T Consensus 139 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 139 KISLANAGI-GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp GCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred ceEEeCCCC-CcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 346666555 899998887554 3 34578999999999999999999999764
No 44
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=83.89 E-value=1.8 Score=36.74 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=40.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhC--CCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAY--PKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f--g~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+.+ ...+++.+++.++++++|.+|++|+.+.+
T Consensus 111 g~~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 111 GKHVGV--LQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp TCEEEE--ETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCEEEE--EcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 357888 47887777766666 34678899999999999999999999875
No 45
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=83.86 E-value=22 Score=32.36 Aligned_cols=170 Identities=10% Similarity=0.020 Sum_probs=93.2
Q ss_pred ceEEEEECCCCcHHHHHHHHhC--------CCCccccCCC-----HHHHHHHHHhCCCCeEEEeeeccCccc--------
Q 019548 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENSSSGS-------- 155 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f--------g~~~~~~~~s-----i~~Vf~aV~~g~ad~gVVPiENS~~G~-------- 155 (339)
.+|+++.-|+|+..+.++..+- |.+++..+++ -.+++++|..|.+|++++..-+. .|.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSAL-GNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGG-TTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhh-hccCccccccc
Confidence 4689999999988777776432 2334433333 37899999999999998864211 010
Q ss_pred -----------------hhhhH-HHhhcCCeEEEEEEEEeeeeeeccCCC-CCcCCcc--EEEecHHHHHHHHHHHHhcC
Q 019548 156 -----------------IHRNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLG 214 (339)
Q Consensus 156 -----------------V~~tl-DlL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqal~QC~~~L~~~~ 214 (339)
..+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..|
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 01111 23345678887654444333 344332 3456665 45442 222 256888889
Q ss_pred CeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCe-eeEEEEee
Q 019548 215 VARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNI-TRFLVLAR 274 (339)
Q Consensus 215 ~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~-TRF~vi~~ 274 (339)
+..++.+ .++....+..+ .-.|+..+.......++.=+.+.+-+....+ +-++++.+
T Consensus 158 a~pv~~~-~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~k~~~~~~~~~~~~~~~~n~ 215 (301)
T 2pfy_A 158 AVPTTVQ-TPEVPQAFSTG--VIDAMLTSPATGVDSQAWDYVKYYYDAQAFIPQSFVIANK 215 (301)
T ss_dssp SEEEECC-GGGHHHHHHTT--SCSBEEECHHHHHHTTGGGTCCEEEECCCCCCEEEEEEEH
T ss_pred Ccceecc-HHHHHHHHhcc--eeeeEecCccccccccHHHHhhhhcccccccceeeEEEcH
Confidence 8877663 34444444443 2335567766655556543344443322222 33444444
No 46
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=83.78 E-value=7 Score=32.34 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=50.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hc---CCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LR---HRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~---~~l~I~g 172 (339)
..+|++ +.|+..+....+ .+.+++.+.+..+++++|.+|++|+.+.+-. ++..+ .+ ..+.+.+
T Consensus 112 g~~i~~--~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~---------~~~~~~~~~~~~~~~~~~ 178 (228)
T 2pyy_A 112 GKVVAT--TAGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAP---------VLLFYAANEGKGKVEIVG 178 (228)
T ss_dssp TCEEEE--ETTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEE
T ss_pred CCeEEE--EcCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCCcEEEec
Confidence 467888 456665554443 2457788999999999999999999998732 22222 22 2577776
Q ss_pred EEEEeeeeeeccCC
Q 019548 173 EVQLAANFCLLALP 186 (339)
Q Consensus 173 Ei~l~I~h~Ll~~~ 186 (339)
...-+..++++..+
T Consensus 179 ~~~~~~~~~~~~~~ 192 (228)
T 2pyy_A 179 SILREESYGIILPN 192 (228)
T ss_dssp EEEEEEEECCEECT
T ss_pred ccccceeEEEEEeC
Confidence 65444455555544
No 47
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=83.71 E-value=1.3 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=31.6
Q ss_pred ceEEEEEEecCCcchHHHHHHHHHhCCceeeeeeee
Q 019548 285 FKTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 320 (339)
Q Consensus 285 ~Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSR 320 (339)
.++.|.+..+|+||-++.+-+.|+++|+|+..+...
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 356677778999999999999999999999998765
No 48
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=82.27 E-value=20 Score=32.36 Aligned_cols=143 Identities=17% Similarity=0.056 Sum_probs=79.6
Q ss_pred CCCceEEEEECCCCcHHHHHHHHhC-----C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCC
Q 019548 94 DGTKVRISFKGLPGSFSEDAALKAY-----P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR 167 (339)
Q Consensus 94 l~~~~~VayLGP~GTfS~~AA~~~f-----g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~ 167 (339)
-...++|+|......|.-.-...+| | +++++++.+..++++++.+|++|++++... ...+......+
T Consensus 27 ~~~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~ 99 (324)
T 3ksx_A 27 EPAQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDI-------PPLFAQAAGAD 99 (324)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESH-------HHHHHHHTTCC
T ss_pred CCCeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCH-------HHHHHHhcCCC
Confidence 3456899998643222211122233 2 257888889999999999999999986422 11222233457
Q ss_pred eEEEEEEEE-eeeeeeccCCCC---CcCCcc--EEEecHHH--HHHHHHHHHhcCC-----eeEecCCHHHHHHHHHhcC
Q 019548 168 LHIVGEVQL-AANFCLLALPGI---KADQLK--RVLSHPQA--LASSDIVLTQLGV-----ARENVDDTASAAQYVASNG 234 (339)
Q Consensus 168 l~I~gEi~l-~I~h~Ll~~~g~---~l~~I~--~VySHpqa--l~QC~~~L~~~~~-----~~i~~~STA~AA~~v~~~~ 234 (339)
+.+++-... +-...++++++. +++|++ +|..-+-. ...-..+|++.++ +.+.. +.+++...+..+.
T Consensus 100 ~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~ 178 (324)
T 3ksx_A 100 LLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQ 178 (324)
T ss_dssp EEEEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTC
T ss_pred EEEEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCC
Confidence 777765432 223556665542 344543 56544322 2234567777654 34444 5666666666542
Q ss_pred CCCeEEecCHH
Q 019548 235 LRDAGAVASAR 245 (339)
Q Consensus 235 ~~~~AAIas~~ 245 (339)
-+++.+..+.
T Consensus 179 -vDa~~~~~p~ 188 (324)
T 3ksx_A 179 -VDAWAIWDPW 188 (324)
T ss_dssp -CSEEEEETTH
T ss_pred -CCEEEEccHH
Confidence 3433343333
No 49
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=81.43 E-value=6 Score=35.15 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=38.6
Q ss_pred CceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
...+|++ +.|+..+....++ +.+++++.+..+++.+|.+|++|+++++
T Consensus 163 ~G~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~ 210 (283)
T 2yln_A 163 KGVKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLND 210 (283)
T ss_dssp TTSEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEE
T ss_pred CCCEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEec
Confidence 3468886 7787776655543 4678889999999999999999999986
No 50
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=81.09 E-value=1.7 Score=37.86 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=58.0
Q ss_pred ceEEEEECCCCcHHHHHHHHh-------CCCCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHH-hhc---
Q 019548 97 KVRISFKGLPGSFSEDAALKA-------YPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL-LLR--- 165 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~-------fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDl-L~~--- 165 (339)
..+|++. .|+..+....++ +++.+++.+++.++++++|.+|++|+.+..-. ++.. +.+
T Consensus 127 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~ 195 (268)
T 3hv1_A 127 GKTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRV---------YANYYLEKSGV 195 (268)
T ss_dssp TCCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHHTTC
T ss_pred CCEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHH---------HHHHHHHhCCC
Confidence 4688885 566666443322 22357889999999999999999999998632 2222 222
Q ss_pred -CCeEEEEEEEEeeeeeeccCCCCCcCCccEEEecHHHHHHHHHHHHh
Q 019548 166 -HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 166 -~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~~VySHpqal~QC~~~L~~ 212 (339)
.++.+.+...-+...+++..++ +|+-..+-.++|.+
T Consensus 196 ~~~l~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 196 LDQYNVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp GGGEEEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCceEECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 3466766544444455554432 35555666666655
No 51
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=80.99 E-value=34 Score=31.41 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=95.8
Q ss_pred ceEEEEECCCCcHHHHHHHHhC------CCCccccCCC-----HHHHHHHHHhCCCCeEEEeeec---------------
Q 019548 97 KVRISFKGLPGSFSEDAALKAY------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIEN--------------- 150 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f------g~~~~~~~~s-----i~~Vf~aV~~g~ad~gVVPiEN--------------- 150 (339)
.+|+++..|+|+..+.++.++- |.+++..+++ -.+++++|..|.+|++++..-+
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 4688999999998888876541 3455544444 3899999999999999886211
Q ss_pred ---c-C-------cc--chhhh-HHHhhcCCeEEEEEEEEeeeeeeccC-CCCCcCCcc--EEEecHHHHHHHHHHHHhc
Q 019548 151 ---S-S-------SG--SIHRN-YDLLLRHRLHIVGEVQLAANFCLLAL-PGIKADQLK--RVLSHPQALASSDIVLTQL 213 (339)
Q Consensus 151 ---S-~-------~G--~V~~t-lDlL~~~~l~I~gEi~l~I~h~Ll~~-~g~~l~~I~--~VySHpqal~QC~~~L~~~ 213 (339)
+ . .| .+.+. .+.+.+.++++.+-......|.. .+ |=.+++|++ +|..-+-+. -.++++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 1 0 12 11111 23344578888876655544443 43 323556666 565533222 24788888
Q ss_pred CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCe-eeEEEEee
Q 019548 214 GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNI-TRFLVLAR 274 (339)
Q Consensus 214 ~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~-TRF~vi~~ 274 (339)
|+..++.+- ++....+..+ .-.|+..+.......++.=+.+.+-+..... +-++++.+
T Consensus 159 Ga~pv~m~~-~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW-GEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG-GGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 988776533 3333334443 2345666665555556543444444333333 33455544
No 52
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=80.95 E-value=2.4 Score=37.24 Aligned_cols=49 Identities=10% Similarity=-0.027 Sum_probs=40.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCC-CCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYP-KCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg-~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++. .|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+
T Consensus 147 g~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 147 GKTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp TSCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 3578884 57777776666666 5678889999999999999999999986
No 53
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=80.64 E-value=2.5 Score=36.38 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=39.0
Q ss_pred ceEEEEECCCCcHHHHHHHHh-CCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKA-YPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~-fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+||+ +.|+..+....++ ++..+++.+++.++++++|.+|++|+++..
T Consensus 124 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 124 DAKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp TCCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred CceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 457887 5788777665554 445678899999999999999999999875
No 54
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=79.60 E-value=5.4 Score=37.05 Aligned_cols=126 Identities=14% Similarity=0.074 Sum_probs=73.7
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~g 172 (339)
+.+++..|+ ||-+|.++..+. | +...+|+.+..+++.+|..|++|+++...- ....++...++++.+
T Consensus 130 ~~~~g~~g~-Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~La 200 (301)
T 2qpq_A 130 QVTYGSCGN-GTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALA 200 (301)
T ss_dssp CCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEE
T ss_pred ceEEecCCC-CcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEE
Confidence 345665554 899998876554 3 345789999999999999999999997632 233444445565543
Q ss_pred E----------------------EEEeeeeeeccCCCCCcCCccEEE---ecHHHHHHHHHHHHhcCCeeEecCCHHHHH
Q 019548 173 E----------------------VQLAANFCLLALPGIKADQLKRVL---SHPQALASSDIVLTQLGVARENVDDTASAA 227 (339)
Q Consensus 173 E----------------------i~l~I~h~Ll~~~g~~l~~I~~Vy---SHpqal~QC~~~L~~~~~~~i~~~STA~AA 227 (339)
- +.+...+.|++.+|++.+-+.++- ..-.+....++++++.+.... ..+.++..
T Consensus 201 v~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~ 279 (301)
T 2qpq_A 201 VTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTA-SDGPEVFQ 279 (301)
T ss_dssp ECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTCEEE-EECHHHHH
T ss_pred EcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCCcCC-CCCHHHHH
Confidence 2 123334566676665322222211 111111345566666676543 34556656
Q ss_pred HHHHh
Q 019548 228 QYVAS 232 (339)
Q Consensus 228 ~~v~~ 232 (339)
+.+.+
T Consensus 280 ~~~~~ 284 (301)
T 2qpq_A 280 KMVET 284 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 55
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=79.07 E-value=38 Score=30.87 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=76.9
Q ss_pred CceEEEEECCCCcHHHHHHHH---hCCC----CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCC
Q 019548 96 TKVRISFKGLPGSFSEDAALK---AYPK----CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHR 167 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~---~fg~----~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~ 167 (339)
..++|+|..-.+...-..|.. +|.. +++++..+..++++++.+|++|+++.... .++... ...+
T Consensus 52 ~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~ 123 (341)
T 3un6_A 52 QVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIE--------LAMKSKQKGSN 123 (341)
T ss_dssp CEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHH--------HHHHHHHTTCC
T ss_pred ceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchH--------HHHHHHHCCCC
Confidence 468899875333333334433 5542 57889999999999999999999987543 222222 2346
Q ss_pred eEEEEEEEEeeeeeeccCCCC---CcCCc---cEEEecHH-H--HHHHHHHHHhcCC-----eeEecCCHHHHHHHHHhc
Q 019548 168 LHIVGEVQLAANFCLLALPGI---KADQL---KRVLSHPQ-A--LASSDIVLTQLGV-----ARENVDDTASAAQYVASN 233 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~---~l~~I---~~VySHpq-a--l~QC~~~L~~~~~-----~~i~~~STA~AA~~v~~~ 233 (339)
+.+++-.. +-...++++++. +++|+ ++|..... . ....+.+|++.++ +.+.. +..++...+..+
T Consensus 124 ~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G 201 (341)
T 3un6_A 124 IKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH 201 (341)
T ss_dssp CEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT
T ss_pred eEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC
Confidence 66665432 233456666542 45666 46654331 1 1223567877654 34445 455566555554
Q ss_pred CCCCeEEecC
Q 019548 234 GLRDAGAVAS 243 (339)
Q Consensus 234 ~~~~~AAIas 243 (339)
.-+ |++..
T Consensus 202 -~vD-a~~~~ 209 (341)
T 3un6_A 202 -RIT-GYSVA 209 (341)
T ss_dssp -SCS-EEEEE
T ss_pred -CCC-EEEec
Confidence 233 44443
No 56
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=76.61 E-value=42 Score=30.01 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=67.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cCCeE
Q 019548 97 KVRISFKGLPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHRLH 169 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg----~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~~l~ 169 (339)
+++|++.+...+.-..++.++|. +++++.+.+..+..+|+.+|++|++..-. .+.++.+. ..++.
T Consensus 4 ~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq~--------~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 4 TVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQH--------VPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEEE--------HHHHHHHHHHHTCCEE
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccCC--------HHHHHHHHHHCCCCEE
Confidence 57899986543322344455663 26899999999999999999999976421 23345443 25677
Q ss_pred EEEEEEEeeeeeeccCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcC
Q 019548 170 IVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLG 214 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--Hpqal~QC~~~L~~~~ 214 (339)
+++.+...- ..+.+.+-.+++|++ +|.- -|--..-...+|.+.|
T Consensus 76 ~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aG 124 (241)
T 1xs5_A 76 SVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAG 124 (241)
T ss_dssp EEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCC
Confidence 777554332 345555445677772 4433 2333344455776654
No 57
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=75.87 E-value=17 Score=33.83 Aligned_cols=160 Identities=13% Similarity=0.020 Sum_probs=89.3
Q ss_pred CCceEEEEECCCCcHHHHHHHHhC--------CCCccccCCC-----HHHHHHHHHhCCCCeEEEeeecc----------
Q 019548 95 GTKVRISFKGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENS---------- 151 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS~~AA~~~f--------g~~~~~~~~s-----i~~Vf~aV~~g~ad~gVVPiENS---------- 151 (339)
+..+|+++..|+|+..+.++.++- |.+++..+++ -.+++++|..|.+|++++..-..
T Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~ 87 (327)
T 2hpg_A 8 KYTLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVM 87 (327)
T ss_dssp SEEEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGG
T ss_pred ceEEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhc
Confidence 345899999999987777765431 2234433332 37899999999999998864210
Q ss_pred ------------------------Cccchhh-hHHHhhc-CCeEEEEE-EEEeeeeeeccCCCCCcCCcc--EEEecHHH
Q 019548 152 ------------------------SSGSIHR-NYDLLLR-HRLHIVGE-VQLAANFCLLALPGIKADQLK--RVLSHPQA 202 (339)
Q Consensus 152 ------------------------~~G~V~~-tlDlL~~-~~l~I~gE-i~l~I~h~Ll~~~g~~l~~I~--~VySHpqa 202 (339)
.+|.+.+ ..+-+.+ .++++.+- ......+....++=.+++|++ +|..-+-+
T Consensus 88 ~lPfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~~~~~~pI~s~~DLkG~KiRv~~~~ 167 (327)
T 2hpg_A 88 NLAYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRHFVTNKPIRKPEDLNGLRIRTPGAP 167 (327)
T ss_dssp GSTTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEEESSCCSSGGGGTTCEEECCSSH
T ss_pred cCCeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCcceeEecCCCCCCHHHHCCCEEEeCCCH
Confidence 1222211 1122334 67888776 444444333323323566666 56554322
Q ss_pred HHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccc
Q 019548 203 LASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRI 259 (339)
Q Consensus 203 l~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~I 259 (339)
-...+++..|+..++.+- ++....+..+ .-.|+..+......+++.=+.+.+
T Consensus 168 --~~~~~~~alGa~pv~m~~-~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ev~ky~ 219 (327)
T 2hpg_A 168 --AWQESIRSLGAIPVAVNF-GEIYTAVQTR--AVDGAELTYANVYNGGLYEVLKYM 219 (327)
T ss_dssp --HHHHHHHHHTSEEECCCG-GGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEE
T ss_pred --HHHHHHHHcCCEeeecCH-HHHHHHHHcC--CeeEEECCHHHHHHcChhhhccEE
Confidence 235788888987765533 3344434443 234666666555444553333333
No 58
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=75.79 E-value=4.6 Score=33.73 Aligned_cols=47 Identities=4% Similarity=0.027 Sum_probs=37.0
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++. .|+..+....+. +.+++.+.+.++++++|.+|++|+.+.+
T Consensus 116 g~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 162 (233)
T 1ii5_A 116 NKEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFD 162 (233)
T ss_dssp TCEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeC
Confidence 4688874 577666554443 4678899999999999999999999876
No 59
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=75.60 E-value=18 Score=30.36 Aligned_cols=49 Identities=6% Similarity=-0.048 Sum_probs=37.2
Q ss_pred ceEEEEECCCCcHHHHHHHH---hCCC--Cccc-cCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALK---AYPK--CETV-PCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~---~fg~--~~~~-~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ +.|+..+....+ .++. .++. ...+.++++++|.+|++|+.+..
T Consensus 115 g~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~ 169 (246)
T 4eq9_A 115 GKSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFD 169 (246)
T ss_dssp TCEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEec
Confidence 468888 578877766665 4664 3444 33699999999999999999985
No 60
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=74.42 E-value=30 Score=31.21 Aligned_cols=113 Identities=14% Similarity=0.051 Sum_probs=77.1
Q ss_pred hCCC--CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEe---eeeeeccCCCCCcC
Q 019548 117 AYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLA---ANFCLLALPGIKAD 191 (339)
Q Consensus 117 ~fg~--~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~---I~h~Ll~~~g~~l~ 191 (339)
.|.+ .++.++++++..+.+|.+|.+|++|+- ...|-+.+.+.++.++-++.-| -.|.|+.+++ +..
T Consensus 40 ~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S--------~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~ 110 (231)
T 2ozz_A 40 QFDGIPFYYAHMRGADIRVECLLNGVYDMAVVS--------RLAAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESG 110 (231)
T ss_dssp TTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEE--------HHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGG
T ss_pred HhcCCcEEEEEccChHHHHHHHHcCCCCEEEEe--------cccchhhhcccCeEEEEEcCCCccccCeEEEEeCC-Ccc
Confidence 4543 577899999999999999999999974 3345555555666666555433 2356666554 345
Q ss_pred CccEEEecHHHHHHHHHHHHh---cCCeeEec-CCHHHHHHHHHhcCCCCeEEec
Q 019548 192 QLKRVLSHPQALASSDIVLTQ---LGVARENV-DDTASAAQYVASNGLRDAGAVA 242 (339)
Q Consensus 192 ~I~~VySHpqal~QC~~~L~~---~~~~~i~~-~STA~AA~~v~~~~~~~~AAIa 242 (339)
.|++|--.+-...|+- |.+ .+.....+ .+.+++...+..+. -.|+|-
T Consensus 111 ~ikrVGvd~gS~dq~~--lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 111 NVKRVGLDSRSADQKI--MTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp GCCEEEECTTCHHHHH--HHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred ccEEEEecCCChhHHH--HHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 6799999988877763 332 35555566 77888888887763 346665
No 61
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=73.17 E-value=4.1 Score=34.45 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=33.3
Q ss_pred eEEEEEE-ecCCcchHHHHHHHHHhCCceeeeeeeeeCCCC--CceEEEec
Q 019548 286 KTSIVFT-LDEGPGVLFKALAVFALREINLTKIESRPQRKR--PLRVVDDS 333 (339)
Q Consensus 286 Ktsi~~~-~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~--~w~~~~~~ 333 (339)
-+.|.+. ++++||.+.++++.|+++|||.-.|-+-...++ .-.|.++.
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~ 75 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR 75 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec
Confidence 4555443 789999999999999999999999865333222 34566553
No 62
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=72.62 E-value=45 Score=29.46 Aligned_cols=139 Identities=15% Similarity=0.013 Sum_probs=72.8
Q ss_pred CceEEEEECCCCcHHHHHH-----HHhCCC--CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCe
Q 019548 96 TKVRISFKGLPGSFSEDAA-----LKAYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA-----~~~fg~--~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l 168 (339)
..++|++......| ..|. .+.+++ ++++.+++-.++++++.+|++|+++.... ......-...++
T Consensus 3 ~~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~-------~~~~~~~~g~~~ 74 (308)
T 2x26_A 3 EALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDI-------PPIFAQAAGADL 74 (308)
T ss_dssp SEEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSH-------HHHHHHHTTCCE
T ss_pred eEEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCc-------HHHHHHhcCCCe
Confidence 45789987542212 2221 122333 57788888889999999999999986422 111111112355
Q ss_pred EEEEEEEE-eeeeeeccCCCC---CcCCcc--EEEecHHH--HHHHHHHHHhcCCe---e-EecCCHHHHHHHHHhcCCC
Q 019548 169 HIVGEVQL-AANFCLLALPGI---KADQLK--RVLSHPQA--LASSDIVLTQLGVA---R-ENVDDTASAAQYVASNGLR 236 (339)
Q Consensus 169 ~I~gEi~l-~I~h~Ll~~~g~---~l~~I~--~VySHpqa--l~QC~~~L~~~~~~---~-i~~~STA~AA~~v~~~~~~ 236 (339)
.+++.... +....++++++. +++|++ +|...+-. ......+|++.++. . ....+..++...+..+.
T Consensus 75 ~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~-- 152 (308)
T 2x26_A 75 VYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN-- 152 (308)
T ss_dssp EEEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS--
T ss_pred EEEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC--
Confidence 55544322 234556665442 344443 55543321 23345677776643 2 12345666666666652
Q ss_pred CeEEecCH
Q 019548 237 DAGAVASA 244 (339)
Q Consensus 237 ~~AAIas~ 244 (339)
-.|++...
T Consensus 153 vDa~~~~~ 160 (308)
T 2x26_A 153 VDAWAIWD 160 (308)
T ss_dssp SSEEEEET
T ss_pred CCEEEecc
Confidence 33555443
No 63
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=71.12 E-value=63 Score=29.63 Aligned_cols=173 Identities=8% Similarity=-0.041 Sum_probs=97.4
Q ss_pred ceEEEEECCCCcHHHHHHHHhC--------CCCccccCCC-----HHHHHHHHHhCCCCeEEEeeecc------------
Q 019548 97 KVRISFKGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENS------------ 151 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f--------g~~~~~~~~s-----i~~Vf~aV~~g~ad~gVVPiENS------------ 151 (339)
.+|+++.-|+|+..+.++..+- |..++..+++ -.+++++|..|.+|++++..-+-
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~l 83 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcC
Confidence 4789998888988888876431 2334433333 58999999999999999864210
Q ss_pred -------------C-ccchhh-hHHHh-hcCCeEEEEEEEEeeeeeeccCCCCCcCCcc--EEEecHHHHHHHHHHHHhc
Q 019548 152 -------------S-SGSIHR-NYDLL-LRHRLHIVGEVQLAANFCLLALPGIKADQLK--RVLSHPQALASSDIVLTQL 213 (339)
Q Consensus 152 -------------~-~G~V~~-tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~--~VySHpqal~QC~~~L~~~ 213 (339)
. +|.+.. .++-+ .+.++++.+-......|....++=.+++|++ +|..-+-. -...+++..
T Consensus 84 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~al 161 (312)
T 2xwv_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYV 161 (312)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHH
T ss_pred CcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHc
Confidence 0 121111 11222 2357888887777766543323323566666 55554322 235788888
Q ss_pred CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCeee-EEEEee
Q 019548 214 GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITR-FLVLAR 274 (339)
Q Consensus 214 ~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~TR-F~vi~~ 274 (339)
|+..++.+- ++....+..+ .-.|+..+.......++.=+.+.+-+....++- ++++.+
T Consensus 162 Ga~pv~m~~-~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 162 GASPTPMAF-SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp TCEEEECCG-GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred CCeeeecCH-HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 987766543 3333333443 234666666555555664445555443333333 445544
No 64
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=70.31 E-value=4.1 Score=34.67 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=36.8
Q ss_pred ceEEEEECCCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg----~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++. .|+..+....+++. +.+++++.+..+++++|.+|++|+++.+
T Consensus 148 g~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 148 GANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp TCEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 4578885 56665655554442 2367889999999999999999999885
No 65
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=67.72 E-value=5.1 Score=34.28 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=27.1
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHhCCceeeeee
Q 019548 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 318 (339)
Q Consensus 286 Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIe 318 (339)
-+.|.+ .++++||.+.++++.|+++|||+-.|-
T Consensus 15 ~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~ 48 (178)
T 2dtj_A 15 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 48 (178)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEE
Confidence 344444 468999999999999999999988874
No 66
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=67.52 E-value=47 Score=26.73 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=73.3
Q ss_pred CCceEEEEECCCCcHH-HHHH---HHhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeE
Q 019548 95 GTKVRISFKGLPGSFS-EDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS-~~AA---~~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~ 169 (339)
+...+|++...-+.+- -... .+.+++.++.. ..+-.++.+.+.+|++|+|++.-.....+... ..|.+.++.
T Consensus 3 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~~ 79 (219)
T 3jv9_A 3 EGAFKLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVT---EPLYDEPFF 79 (219)
T ss_dssp CCCEEEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTTEEE---EEEEEEEEE
T ss_pred CCcEEEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCCeeE---EEeeeceEE
Confidence 4567888764433321 1111 23467765543 34677899999999999999975422221110 000111111
Q ss_pred EEEEEEEeeeeeeccCCCCCcCCc---cEEEecHH--HHHHHHHHHHh-----c--CC-eeEecCCHHHHHHHHHhcCCC
Q 019548 170 IVGEVQLAANFCLLALPGIKADQL---KRVLSHPQ--ALASSDIVLTQ-----L--GV-ARENVDDTASAAQYVASNGLR 236 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySHpq--al~QC~~~L~~-----~--~~-~~i~~~STA~AA~~v~~~~~~ 236 (339)
+..+-.|-|......+++++ .-|...+. -..+..+|+.+ . .. ....++|...+..++..+
T Consensus 80 ----~v~~~~~pl~~~~~~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g--- 152 (219)
T 3jv9_A 80 ----VIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASG--- 152 (219)
T ss_dssp ----EEEETTCGGGTSSSCCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHT---
T ss_pred ----EEEeCCCCcccCCCCCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcC---
Confidence 12233344443333444444 34443322 22344555533 2 12 235677777777777775
Q ss_pred CeEEecCHHHHH
Q 019548 237 DAGAVASARAAE 248 (339)
Q Consensus 237 ~~AAIas~~AA~ 248 (339)
...||.+...+.
T Consensus 153 ~gi~~~p~~~~~ 164 (219)
T 3jv9_A 153 LAISVLPATALT 164 (219)
T ss_dssp SCEEEEEGGGCC
T ss_pred CcEEehhHHHHH
Confidence 457777776544
No 67
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=67.12 E-value=37 Score=29.33 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=65.3
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCC----CCcCCcc--
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG----IKADQLK-- 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g----~~l~~I~-- 194 (339)
.++++..++.++++++.+|++|... ++-.+.+- .+ .+.. ..-++.....++++++ .+++|++
T Consensus 73 ~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r-----~~-----~~~f-s~p~~~~~~~l~~~~~~~~i~~~~dL~g~ 140 (267)
T 3mpk_A 73 FEIIGVDTVEELIAKLRSGEADMAG-ALFVNSAR-----ES-----FLSF-SRPYVRNGMVIVTRQDPDAPVDADHLDGR 140 (267)
T ss_dssp EEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGG-----TT-----TEEE-CSCSEEECEEEEEESSTTSCSSGGGCTTC
T ss_pred EEEEecCCHHHHHHHHHCCCccEEe-cccCChhh-----hc-----ceEe-chhhccCceEEEEECCCCCCCCHHHHCCC
Confidence 6788889999999999999999843 44322211 01 1111 1111223344554433 1233332
Q ss_pred EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-. . -..||.+. ++..+.+.|..++.+++..+ .-.|+|.....+..
T Consensus 141 ~i~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~G--rvDa~i~~~~~~~~ 193 (267)
T 3mpk_A 141 TVALVRNS-A-AIPLLQRRYPQAKVVTADNPSEAMLMVANG--QADAVVQTQISASY 193 (267)
T ss_dssp EEEEETTC-T-HHHHHHHHCTTSEEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEeCCc-h-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 34333211 1 23466653 67888999999999999886 35678877765543
No 68
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=65.92 E-value=65 Score=27.73 Aligned_cols=144 Identities=13% Similarity=0.049 Sum_probs=73.0
Q ss_pred CCCceEEEEECCCCc-HHHHHH---HHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCe
Q 019548 94 DGTKVRISFKGLPGS-FSEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (339)
Q Consensus 94 l~~~~~VayLGP~GT-fS~~AA---~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l 168 (339)
.....+|++...-+. +--... .+.++++++. -..+-+++.+.+.+|++|+|++.......+... ..|.+.++
T Consensus 89 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~ 165 (294)
T 1ixc_A 89 DVGELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEI---VNIAQEDL 165 (294)
T ss_dssp CCEEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEE---EEEEEEEE
T ss_pred CCceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceE---EEEeeccE
Confidence 345678887544332 222221 2346765443 234567889999999999999865432211111 00111111
Q ss_pred EEEEEEEEeeeeeeccCCCCCcCCc---cEEEec----HHHHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCe
Q 019548 169 HIVGEVQLAANFCLLALPGIKADQL---KRVLSH----PQALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDA 238 (339)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySH----pqal~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~ 238 (339)
. +..+-.|-|......+++|+ .-|... +.......+|+...+.. ...++|...+..++..+ ..
T Consensus 166 ~----~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~G 238 (294)
T 1ixc_A 166 Y----LAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAG---AA 238 (294)
T ss_dssp E----EEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT---SC
T ss_pred E----EEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcC---Ce
Confidence 1 12233444443222334443 344433 12234566777776543 34567777677777664 34
Q ss_pred EEecCHHHH
Q 019548 239 GAVASARAA 247 (339)
Q Consensus 239 AAIas~~AA 247 (339)
.|+.+...+
T Consensus 239 ia~lp~~~~ 247 (294)
T 1ixc_A 239 SSIVPASVA 247 (294)
T ss_dssp BEEEEHHHH
T ss_pred EEEechhhh
Confidence 677777654
No 69
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=64.79 E-value=15 Score=31.06 Aligned_cols=112 Identities=7% Similarity=0.031 Sum_probs=68.9
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCC--CCcCCccEEE
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG--IKADQLKRVL 197 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g--~~l~~I~~Vy 197 (339)
+.++++. ++..++.++.+|++|.++-++- .|-+. +..+... .-++.....++.+++ .++.. +|.
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~fs-~p~~~~~~~~~~~~~~~~dL~g--~ig 110 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMS--------ITDER--DEVIDFT-QNYIPPTASSYVATSDGADLSG--IVA 110 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCB--------CCHHH--HTTSEEE-EEEECCCEEEEEESSTTCCTTS--EEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCc--------CCHHH--HhhcCcc-cccccCCeEEEEECCChHHhCC--CEE
Confidence 3567775 8999999999999998664332 12221 1122222 234455566666554 23444 333
Q ss_pred ecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 198 SHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 198 SHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
...-. . -..||.+.++..+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 111 v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 158 (232)
T 3i6v_A 111 AQTAT-I-QAGYIAESGATLVEFATPEETIAAVRNG--EADAVFADRDYLVP 158 (232)
T ss_dssp EETTS-H-HHHHHHHSSSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EecCc-h-HHHHHHhcCCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHHH
Confidence 32211 1 2456766688889999999999999876 35678877766643
No 70
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=64.51 E-value=6.1 Score=35.02 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=28.8
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHhCCceeeeeeee
Q 019548 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIESR 320 (339)
Q Consensus 286 Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIeSR 320 (339)
-+.|.+ .+|++||.+.++++.|+++|||.-.|-.-
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs 70 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQN 70 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECC
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeec
Confidence 344433 57999999999999999999999999543
No 71
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=64.21 E-value=63 Score=30.13 Aligned_cols=133 Identities=14% Similarity=0.006 Sum_probs=77.9
Q ss_pred CceEEEEECCCCcHHHHHHHHh-------C-CCCccccCC-----CHHHHHHHHHhCCCCeEEEeeeccC---------c
Q 019548 96 TKVRISFKGLPGSFSEDAALKA-------Y-PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSS---------S 153 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~-------f-g~~~~~~~~-----si~~Vf~aV~~g~ad~gVVPiENS~---------~ 153 (339)
..+++++..|+|+..+.++..+ - |.+++..++ +..+++++|..|.+|++++..-... .
T Consensus 34 ~~l~~~~~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~ 113 (361)
T 2zzv_A 34 YRWRIQTAWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLS 113 (361)
T ss_dssp EEEEEEESSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSS
T ss_pred eEEEEeccCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHh
Confidence 3589999999997766666543 1 234443333 4689999999999999988642111 0
Q ss_pred ---cch------hh---------hHH-HhhcCCeEEEEEEEEeeeeeeccCCC-CCcCCcc--EEEecHHHHHHHHHHHH
Q 019548 154 ---GSI------HR---------NYD-LLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLT 211 (339)
Q Consensus 154 ---G~V------~~---------tlD-lL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqal~QC~~~L~ 211 (339)
... .. .++ .+.+.++++.+ ......+.+..+++ .+++|++ +|-.-. +. ...+++
T Consensus 114 ~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~~--~~~~~~ 189 (361)
T 2zzv_A 114 SYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-GM--IAEVFA 189 (361)
T ss_dssp CCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-HH--HHHHHH
T ss_pred cCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-HH--HHHHHH
Confidence 000 00 011 12346788888 65544454444332 3566766 555443 22 357888
Q ss_pred hcCCeeEecCCHHHHHHHHHhc
Q 019548 212 QLGVARENVDDTASAAQYVASN 233 (339)
Q Consensus 212 ~~~~~~i~~~STA~AA~~v~~~ 233 (339)
..|+..++. +.++....+..+
T Consensus 190 ~lGa~pv~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 190 AAGASTVLL-PGGEVYPALERG 210 (361)
T ss_dssp HTTCEEECC-CGGGHHHHHHTT
T ss_pred HcCCeeeec-ChHHHHHHHHcC
Confidence 889877766 444555555554
No 72
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=62.54 E-value=91 Score=28.31 Aligned_cols=115 Identities=14% Similarity=-0.019 Sum_probs=64.5
Q ss_pred Ccc--ccCCC-HHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc
Q 019548 121 CET--VPCDE-FEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK 194 (339)
Q Consensus 121 ~~~--~~~~s-i~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~ 194 (339)
+++ ....+ ..++++++.+|++|+++.... ......-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDL-------PPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESH-------HHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcH-------HHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 566 55654 778999999999999995422 11112223456777765544445566665542 344443
Q ss_pred --EEEecHH--HHHHHHHHHHhcCC-----eeEecCCHHHHHHHHHhcCCCCeEEecCHH
Q 019548 195 --RVLSHPQ--ALASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVASAR 245 (339)
Q Consensus 195 --~VySHpq--al~QC~~~L~~~~~-----~~i~~~STA~AA~~v~~~~~~~~AAIas~~ 245 (339)
+|...+- .......+|++.++ +.+.. +.+++...+..+. -.|++....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~--vDa~~~~~~ 175 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT--VDGFFSLFD 175 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS--SSEEEESTT
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC--CCEEEechH
Confidence 5654322 22334677777663 34433 5566666666542 335554443
No 73
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=62.44 E-value=57 Score=28.82 Aligned_cols=88 Identities=10% Similarity=-0.124 Sum_probs=52.0
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCc--cE
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL--KR 195 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I--~~ 195 (339)
+++++..+-.+.++++.+|++|+++.... ..+...-...++.+++.....-...|+++++. +++|+ |+
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk~ 108 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQP-------DVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 108 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHH-------HHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSE
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHH-------HHHHHHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCCE
Confidence 57788887779999999999999986321 11111112356777776654444667765432 33444 35
Q ss_pred EEecHH--HHHHHHHHHHhcCC
Q 019548 196 VLSHPQ--ALASSDIVLTQLGV 215 (339)
Q Consensus 196 VySHpq--al~QC~~~L~~~~~ 215 (339)
|...+- .....+.+|++.++
T Consensus 109 i~~~~~~~~~~~~~~~l~~~Gl 130 (302)
T 3ix1_A 109 VGYPGIPVNEPILKTMVEAAGG 130 (302)
T ss_dssp EEECSCTTHHHHHHHHHHHTTC
T ss_pred EEeCCCcchHHHHHHHHHHcCC
Confidence 544322 22335677777653
No 74
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=61.48 E-value=29 Score=28.44 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=64.2
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC----CcCCcc--
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK-- 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~-- 194 (339)
.++++. ++.++++++++|++|.++-++--+.+. -+. +... .-+......++++++. +++|++
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r-----~~~-----~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g~ 110 (227)
T 3tql_A 43 CTISNQ-PWDSLIPSLKLGKFDALFGGMNITTAR-----QKE-----VDFT-DPYYTNSVSFIADKNTPLTLSKQGLKGK 110 (227)
T ss_dssp EEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTG-----GGT-----EEEC-SCSBCCEEEEEEETTSCCCCSTTTTTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhH-----Hhh-----eecc-cceeccceEEEEeCCCCCCCCHHHhCCC
Confidence 567775 799999999999999876433211110 010 1110 1111223445544332 344442
Q ss_pred EEEecHHHHHHHHHHHHhc--C-CeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 RVLSHPQALASSDIVLTQL--G-VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ~VySHpqal~QC~~~L~~~--~-~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-... ..+|.+. . +..+.+.|..++.+++..+ .-.|++.....+..
T Consensus 111 ~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 111 IIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp EEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred EEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322211 3455553 3 7888899999999988876 35688888776654
No 75
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=60.76 E-value=67 Score=26.13 Aligned_cols=114 Identities=9% Similarity=0.047 Sum_probs=66.1
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cCCeEEEEEEEEeeeeeeccCCC-------CCcC
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALPG-------IKAD 191 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~~l~I~gEi~l~I~h~Ll~~~g-------~~l~ 191 (339)
+.++++.++..++++++.+|++|+++-++.-+ .+....+. ..++.-. ...++.+++ .+++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~-----~~r~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISIT-----AEREQNFDFSLPIFAS-------GLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCC-----HHHHHHSEECSCSEEE-------EEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccC-----HHHHccceecccchhc-------ceEEEEECCccccCCcCCHH
Confidence 46788888999999999999999886332111 11111111 1222211 122332221 1233
Q ss_pred Ccc--EEEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 192 QLK--RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 192 ~I~--~VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
|++ +|....... -..||.++++..+.+.|..++.+++..+ .-.|++.....+..
T Consensus 109 dL~g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~~ 164 (228)
T 2pyy_A 109 DLPGKVVATTAGST--AATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDAPVLLF 164 (228)
T ss_dssp GCTTCEEEEETTSH--HHHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred HcCCCeEEEEcCcH--HHHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 332 343322211 3467877888888899999999998876 34577777765543
No 76
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=60.24 E-value=70 Score=28.38 Aligned_cols=130 Identities=18% Similarity=0.092 Sum_probs=75.3
Q ss_pred CceEEEEECCCCcHH---HHHHHH-hC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cC
Q 019548 96 TKVRISFKGLPGSFS---EDAALK-AY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RH 166 (339)
Q Consensus 96 ~~~~VayLGP~GTfS---~~AA~~-~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~ 166 (339)
.+.+|.+-+..+++. ..|..+ +| | ++++++..+..+++++|.+|++|+++.+.. .++.... ..
T Consensus 33 ~~~~i~~~~~~~~~~~~~~~a~~~g~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~~~ 104 (346)
T 3qsl_A 33 AKVQIAVGGKPLIYYLPLTIAEVKGFFKDEGLDVSIADFAGGSKALQAVVGGSADVVSGAFE--------HTLSLQAKGQ 104 (346)
T ss_dssp SEEEEEESCTTSGGGHHHHHHHHTTHHHHTTCEEEEEECSSHHHHHHHHHTTSCSEEEEETH--------HHHHHHHTTC
T ss_pred CceEEEecCccchhhhHHHHHHHCCchHhhCCeEEEEecCChHHHHHHHHCCCCCEEccchH--------HHHHHHhCCC
Confidence 346666655555432 222211 23 2 257788899999999999999999987643 2333322 24
Q ss_pred CeEEEEEEEEeeeeeeccCCC-----CCcCCcc--EEEec-HH--HHHHHHHHHHhcCC-----eeEecCCHHHHHHHHH
Q 019548 167 RLHIVGEVQLAANFCLLALPG-----IKADQLK--RVLSH-PQ--ALASSDIVLTQLGV-----ARENVDDTASAAQYVA 231 (339)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~--~VySH-pq--al~QC~~~L~~~~~-----~~i~~~STA~AA~~v~ 231 (339)
++.+.+.....-...++.+++ .+++|++ +|... +- .....+.+|++.++ +.+.+.+.+++...+.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~ 184 (346)
T 3qsl_A 105 FYRAFALQGRAPMIGVGVSKKNLPGYKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALR 184 (346)
T ss_dssp CEEEEEESBSSCCEEEEEETTTCTTCCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHH
T ss_pred CeEEEEecccCCCcEEEEecCcccCCCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHH
Confidence 566655443332345555442 2344553 56544 32 23345678877653 4577777777777777
Q ss_pred hc
Q 019548 232 SN 233 (339)
Q Consensus 232 ~~ 233 (339)
.+
T Consensus 185 ~G 186 (346)
T 3qsl_A 185 SG 186 (346)
T ss_dssp HT
T ss_pred cC
Confidence 65
No 77
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=59.43 E-value=32 Score=31.49 Aligned_cols=84 Identities=13% Similarity=-0.034 Sum_probs=53.5
Q ss_pred CceEEEEECCCCcHHHHHHHHhC-CC--------CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhc-
Q 019548 96 TKVRISFKGLPGSFSEDAALKAY-PK--------CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR- 165 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~f-g~--------~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~- 165 (339)
+..+|+|-.|..|..|.+...++ .. ...+...+.++++.+|.+|++|.++++.. +++.+.+
T Consensus 115 kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~ 185 (310)
T 3n5l_A 115 KSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELT 185 (310)
T ss_dssp GGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHH
T ss_pred CCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHh
Confidence 34589886665555566655432 21 23345678899999999999999998632 3333332
Q ss_pred -----CCeEEEEEEEEeeeeeeccCCCC
Q 019548 166 -----HRLHIVGEVQLAANFCLLALPGI 188 (339)
Q Consensus 166 -----~~l~I~gEi~l~I~h~Ll~~~g~ 188 (339)
.++++.++...--.+.++.+++.
T Consensus 186 ~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 186 QPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp CHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred CccchhCEEEEEECCCCCCCcEEEECCC
Confidence 46888887654444566666653
No 78
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=59.12 E-value=12 Score=32.14 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=33.8
Q ss_pred EecCCcchHHHHHHHHHhCCceeeeeee-eeC--CC-CCceEEEecCC
Q 019548 292 TLDEGPGVLFKALAVFALREINLTKIES-RPQ--RK-RPLRVVDDSNN 335 (339)
Q Consensus 292 ~~~~~pGaL~~iL~~Fa~~gINLtkIeS-RP~--~~-~~w~~~~~~~~ 335 (339)
.++++||.+.++++.|+++|||.-.|-. -|. .+ ....|.++.+.
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~ 70 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV 70 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH
Confidence 5789999999999999999999999863 232 11 25777777653
No 79
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=59.06 E-value=12 Score=31.53 Aligned_cols=115 Identities=13% Similarity=0.097 Sum_probs=64.6
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCc--cE
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL--KR 195 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I--~~ 195 (339)
.++++. ++.+++.++.+|++|+++.++--+.+.. + .+... .-+......++++++. +++|+ ++
T Consensus 45 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~fs-~p~~~~~~~~~~~~~~~~~~~~dL~g~~ 112 (237)
T 3kzg_A 45 CTFEAY-IFDDLFPALKNREVDLVIASMIITDERK-----K-----HFIFS-LPYMESNSQYITTVDSKISTFDDLHGKK 112 (237)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG-----G-----TCEEC-CCSBCCEEEEEEETTCSCCSGGGGTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh-----c-----cceee-eeeeecceEEEEECCCCCCCHHHhCCCE
Confidence 567777 6899999999999998765433222111 0 01000 0112233445554432 23333 23
Q ss_pred EEecHHHHHHHHHHHHhc-CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHc
Q 019548 196 VLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~y 250 (339)
|.... .-.....+++.. ++..+.+.|..++.+++..+ .-.|++.....+..+
T Consensus 113 i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 113 IGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKYW 165 (237)
T ss_dssp EEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHHH
T ss_pred EEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHHH
Confidence 43322 222233344444 56788899999999998876 355777777666543
No 80
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=58.80 E-value=28 Score=29.11 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=68.7
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEE--eeeeeeccCCCC---CcCCcc
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPGI---KADQLK 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l--~I~h~Ll~~~g~---~l~~I~ 194 (339)
+.++++. ++.+++.++++|++|+++-++- .|-+. ...+.. .-++ .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPSR--LKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHHH--HTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--------CCHHH--Hhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 3677888 8999999999999998752221 12211 112222 3333 455666665432 344442
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHc
Q 019548 195 --RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (339)
Q Consensus 195 --~VySHpqal~QC~~~L~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~y 250 (339)
+|.... .... ..+|.+. +...+.+.|..++.+++..+ .-.|+|.....+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 343322 2122 3455554 67788899999999998876 356888887766654
No 81
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=58.76 E-value=76 Score=26.18 Aligned_cols=144 Identities=15% Similarity=0.032 Sum_probs=72.2
Q ss_pred CCceEEEEECCCCc--HHHH--HHHHhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeE
Q 019548 95 GTKVRISFKGLPGS--FSED--AALKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (339)
Q Consensus 95 ~~~~~VayLGP~GT--fS~~--AA~~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~ 169 (339)
....+|++...-+. .... .-++.++++++.. ..+-+++.+.+.+|++|+|++.-.....+... ..|.+.++.
T Consensus 29 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 105 (238)
T 2hxr_A 29 RGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEA---IPLLTESLA 105 (238)
T ss_dssp --CEEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEEE---EEEEEEEEE
T ss_pred CCeEEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCccccee---eeeccCcEE
Confidence 45678887543222 1121 1133467765533 34578899999999999999864321111110 001111111
Q ss_pred EEEEEEEeeeeeeccCCCCCcCCcc---EEE-ecHHH-HHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEe
Q 019548 170 IVGEVQLAANFCLLALPGIKADQLK---RVL-SHPQA-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAV 241 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~---~Vy-SHpqa-l~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAI 241 (339)
+.++-.|-|...+..+++|+. -|. ++... ......|+.+.+.. ...++|...+..++..+ ...|+
T Consensus 106 ----~v~~~~hpl~~~~~i~~~dl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi~~ 178 (238)
T 2hxr_A 106 ----LVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRT---SLSTL 178 (238)
T ss_dssp ----EEEETTSGGGGCSEECGGGGGGCEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHS---SCBEE
T ss_pred ----EEEcCCCcccccCCCCHHHHhcCCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CcEEE
Confidence 122334545433333445543 343 22222 23455666665543 24567777777777765 34677
Q ss_pred cCHHHHH
Q 019548 242 ASARAAE 248 (339)
Q Consensus 242 as~~AA~ 248 (339)
.+...+.
T Consensus 179 lp~~~~~ 185 (238)
T 2hxr_A 179 LPAAIAT 185 (238)
T ss_dssp EETHHHH
T ss_pred ecHHHhc
Confidence 7776554
No 82
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=58.68 E-value=23 Score=32.66 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=57.2
Q ss_pred CceEEEEECCCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh----cCC
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL----RHR 167 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg----~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~----~~~ 167 (339)
.+++|+|.+|.... ..++.++|. +++++.+.+..+..+++.+|++|++...- .+.++.+. ..+
T Consensus 39 ~~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~~--------~~~l~~~~~~~~g~~ 109 (295)
T 1p99_A 39 KKVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQH--------FAFLDQYKKAHKGTK 109 (295)
T ss_dssp -CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEEE--------HHHHHHHHHHCTTCC
T ss_pred CeEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccCC--------HHHHHHHHHhcCCCC
Confidence 46899999765533 444555664 36889999999999999999999987421 23344443 246
Q ss_pred eEEEEEEEEeeeeeeccCCCCCcCCc
Q 019548 168 LHIVGEVQLAANFCLLALPGIKADQL 193 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I 193 (339)
+.+++.+...- ..+.+.+-.+++|+
T Consensus 110 l~~v~~~~~~p-~g~ys~~iksl~DL 134 (295)
T 1p99_A 110 ISALSTTVLAP-LGIYSDKIKDVKKV 134 (295)
T ss_dssp EEEEEEEEECC-CEEECSSCSCGGGC
T ss_pred EEEEEeecccc-ceeecCCCCChHHc
Confidence 77777665431 34444433456777
No 83
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=58.66 E-value=95 Score=27.27 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=71.9
Q ss_pred ceEEEEECCCCc-HHHHHH---HHhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEE
Q 019548 97 KVRISFKGLPGS-FSEDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIV 171 (339)
Q Consensus 97 ~~~VayLGP~GT-fS~~AA---~~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~ 171 (339)
..+|++...-+. +--... .+.++++++.. ..+..++.+.+.+|++|+|++.......+... ..|.+.++.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM-- 165 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE--
Confidence 677777543332 111111 23467655433 34678999999999999999864322111111 001111111
Q ss_pred EEEEEeeeeeecc-CCC-CCcCCc---cEEEecH----HHHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeE
Q 019548 172 GEVQLAANFCLLA-LPG-IKADQL---KRVLSHP----QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAG 239 (339)
Q Consensus 172 gEi~l~I~h~Ll~-~~g-~~l~~I---~~VySHp----qal~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~A 239 (339)
+..+-.|-|.. ... .+++|+ .-|.-.+ ....+..+|+...+.. ...++|...+..++..+ ...
T Consensus 166 --~v~~~~hpla~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (312)
T 2h9b_A 166 --VAVHASHPLNQMKDKGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAG---EGI 240 (312)
T ss_dssp --EEEETTSGGGGGTTTCBCGGGSTTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCccccccCCCCCHHHHcCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcC---CcE
Confidence 22344455554 332 344444 3444211 1234566777766542 34567777777777664 346
Q ss_pred EecCHHHH
Q 019548 240 AVASARAA 247 (339)
Q Consensus 240 AIas~~AA 247 (339)
|+.+...+
T Consensus 241 a~lp~~~~ 248 (312)
T 2h9b_A 241 SLVPASTQ 248 (312)
T ss_dssp EEEEGGGG
T ss_pred EEecchhh
Confidence 66666544
No 84
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=57.49 E-value=16 Score=33.92 Aligned_cols=35 Identities=9% Similarity=-0.132 Sum_probs=32.1
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeee
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 320 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSR 320 (339)
+..|.+..+|+||-.+.+-+.|+++|+|+..+.+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~ 42 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSF 42 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeee
Confidence 45677888999999999999999999999999988
No 85
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=57.48 E-value=17 Score=34.02 Aligned_cols=35 Identities=3% Similarity=0.110 Sum_probs=32.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeee
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 320 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSR 320 (339)
+..|.+..+|+||-.+.+-+.|+++|+|+..+...
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~ 44 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVF 44 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence 55677888999999999999999999999999988
No 86
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.02 E-value=18 Score=33.79 Aligned_cols=67 Identities=7% Similarity=-0.087 Sum_probs=47.4
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEE
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVG 172 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~g 172 (339)
+.+++..|+ ||.+|.++..++ | +...+|+....+++.+|..|++|+++...- ....++...++++.+
T Consensus 143 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~La 213 (314)
T 2dvz_A 143 KYSYGSSGT-CGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLP--------SSMPQIQAGKLRAMA 213 (314)
T ss_dssp TCEEEESCT-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEHH--------HHHHHHHTTSSEEEE
T ss_pred cEEEeCCCC-CcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcHH--------HHHHHHHcCCEEEEE
Confidence 356665555 999999887654 3 345789999999999999999999997542 233444445555543
No 87
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=56.49 E-value=6.2 Score=33.23 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=34.2
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 286 Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
|+|++= ..+++||.+.++++.|++.|||+..|- +....-.++|+..
T Consensus 97 ~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is---~Se~~is~vv~~~ 143 (167)
T 2dt9_A 97 KVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA---TSEVRISVIIPAE 143 (167)
T ss_dssp EEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE---ECSSEEEEEEEGG
T ss_pred EEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE---ccCCEEEEEEeHH
Confidence 566653 457899999999999999999997774 2234556666654
No 88
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=55.99 E-value=12 Score=33.64 Aligned_cols=49 Identities=10% Similarity=-0.077 Sum_probs=37.9
Q ss_pred eEEEEECCCCcHHHHHHHHh---CC----CCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 98 VRISFKGLPGSFSEDAALKA---YP----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 98 ~~VayLGP~GTfS~~AA~~~---fg----~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
.+|++.|+ ||-++.....+ .| +++++++.+..+++.++.+|++|.++++
T Consensus 139 k~i~~~~~-gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 139 RKIGVTAP-GSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp CEEEESST-TSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CEEEECCC-CcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 58998764 77777655443 33 2567889888999999999999999985
No 89
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=55.77 E-value=21 Score=33.57 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=33.1
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~ 322 (339)
+..|.+..+|+||-.+.+-+.++++|+|+..+...-.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 5667788899999999999999999999999998844
No 90
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=55.35 E-value=38 Score=27.80 Aligned_cols=144 Identities=11% Similarity=0.002 Sum_probs=70.6
Q ss_pred CCceEEEEECCCCcH-HHHHH---HHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeE
Q 019548 95 GTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (339)
Q Consensus 95 ~~~~~VayLGP~GTf-S~~AA---~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~ 169 (339)
....+|++...-+.+ --... .+.++++++. -..+..++.+.+.+|++|+|++.-.....+... ..|.+..+.
T Consensus 10 ~g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 86 (232)
T 3ho7_A 10 TGRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLED---DLLYYEEFL 86 (232)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE
T ss_pred ceeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCeEE---EEecccCEE
Confidence 445677765433222 11111 2345665443 235678999999999999999864322211110 000011111
Q ss_pred EEEEEEEeeeeeeccCCCCCcCCcc---EEEecHH--HHHHHHHHHHhcCCe----eEecCCHHHHHHHHHhcCCCCeEE
Q 019548 170 IVGEVQLAANFCLLALPGIKADQLK---RVLSHPQ--ALASSDIVLTQLGVA----RENVDDTASAAQYVASNGLRDAGA 240 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~---~VySHpq--al~QC~~~L~~~~~~----~i~~~STA~AA~~v~~~~~~~~AA 240 (339)
+.++-.|-|...+..+++|+. -|...+. ...+...|+.+.+.. ...++|...+..+++.+ ...|
T Consensus 87 ----~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~ 159 (232)
T 3ho7_A 87 ----GYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESG---QGIT 159 (232)
T ss_dssp ----EEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTT---CCEE
T ss_pred ----EEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcC---CcEE
Confidence 112223333333223333332 2222211 123456677665432 35667777777777764 4577
Q ss_pred ecCHHHHH
Q 019548 241 VASARAAE 248 (339)
Q Consensus 241 Ias~~AA~ 248 (339)
|.+...+.
T Consensus 160 ~~p~~~~~ 167 (232)
T 3ho7_A 160 FIPQLTVE 167 (232)
T ss_dssp EEEGGGGG
T ss_pred EecHHHhh
Confidence 77777665
No 91
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=55.29 E-value=20 Score=33.27 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=32.4
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeee
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP 321 (339)
+..|.+..+|+||-.+.+-+.++++|+|+..+....
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 42 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN 42 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence 556778889999999999999999999999998863
No 92
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=54.86 E-value=7.1 Score=32.87 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=33.6
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHhCCceeeeeeeeeCC----CCCceEEEec
Q 019548 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIESRPQR----KRPLRVVDDS 333 (339)
Q Consensus 286 Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~----~~~w~~~~~~ 333 (339)
-+.|.+ .++++||.+.++++.|+++|||.-.|-.-+.. ...-.|.++.
T Consensus 16 ~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 16 HAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 344433 45899999999999999999999998653332 1235566653
No 93
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=54.50 E-value=83 Score=26.44 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=68.6
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEE--eeeeeeccCCC----CCcCCcc
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPG----IKADQLK 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l--~I~h~Ll~~~g----~~l~~I~ 194 (339)
.++++. +..++++++.+|++|+++.++. .+-+. ...+.. .-++ .....++.+++ .+++|++
T Consensus 72 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL~ 138 (268)
T 3qax_A 72 LEVREF-AFDALILNLKKHRIDAILAGMS--------ITPSR--QKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLTQ 138 (268)
T ss_dssp EEEEEC-CGGGHHHHHHHTSSSEECSCCB--------CCHHH--HTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGGG
T ss_pred EEEEec-CHHHHHHHHhCCCccEEeecCc--------cCHhH--hcceee--ecceecccceEEEEECCCCCCCCHHHhC
Confidence 577777 8999999999999998763322 11111 122323 3344 45556666543 2344443
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHc
Q 019548 195 --RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (339)
Q Consensus 195 --~VySHpqal~QC~~~L~~~-~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~y 250 (339)
+|....-.. . ..++... +...+.+.|..++.+.+..+ .-.|++.....+..+
T Consensus 139 g~~i~~~~g~~-~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 139 YSSVAVQTGTY-Q-EHYLLSQPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp SSCEEEETTSH-H-HHHHHTSTTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEecCcH-H-HHHHHhCCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 444332221 1 3455554 67788889999999988876 356788877766654
No 94
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=54.10 E-value=28 Score=30.28 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=35.6
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHH--HHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDT--FKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~V--f~aV~~g~ad~gVVP 147 (339)
..+||+ +.|+..+....+ ++. +++.+++..++ +++|.+|++| +++.
T Consensus 132 g~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~ 179 (271)
T 2iee_A 132 GKKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILN 179 (271)
T ss_dssp TCEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEE
T ss_pred CCEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEec
Confidence 367887 578877665543 454 78889999999 9999999999 7764
No 95
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=53.63 E-value=9.9 Score=31.99 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.4
Q ss_pred ecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEec
Q 019548 293 LDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDS 333 (339)
Q Consensus 293 ~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~ 333 (339)
..++||.+.++++.|+++|||...|- +....-.++++.
T Consensus 113 m~~~~Gv~a~i~~aL~~~~InI~~is---tse~~is~vv~~ 150 (167)
T 2re1_A 113 MRSHVGVAAKIFRTLAEEGINIQMIS---TSEIKVSVLIDE 150 (167)
T ss_dssp CTTCCCHHHHHHHHHHHTTCCCCEEE---ECSSEEEEEEEG
T ss_pred cCCCcCHHHHHHHHHHHCCCcEEEEE---cccCEEEEEEeH
Confidence 46799999999999999999999975 344556666654
No 96
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=52.97 E-value=93 Score=25.39 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=66.6
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhH--HHh-hcCCeEEEEEEEEeeeeeeccCCC-----CCcC
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNY--DLL-LRHRLHIVGEVQLAANFCLLALPG-----IKAD 191 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tl--DlL-~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~ 191 (339)
+.++++..++.++++++.+|++|+++-++.-+.+ -. +.+ ...++. .....++.+++ .+++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~~~~s~p~~-------~~~~~~~~~~~~~~~i~~~~ 112 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPE-----RAAIEGITFTQPYF-------SSGIGLLIPGTATPLFRSVG 112 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHH-----HHTSTTEEECCCCE-------EEEEEEEEEGGGTTTCSSGG
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCcc-----ccccceeEEcccee-------ecCeEEEEECCCCCCCCCHH
Confidence 4678888899999999999999998755431110 00 111 111221 22233443322 1233
Q ss_pred Ccc--EEEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 192 QLK--RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 192 ~I~--~VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
|++ +|....-.. ...+|.+.+...+.+.|..++.+++..+ .-.|+|.....+..
T Consensus 113 dL~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 113 DLKNKEVAVVRDTT--AVDWANFYQADVRETNNLTAAITLLQKK--QVEAVMFDRPALIY 168 (233)
T ss_dssp GGTTCEEEEETTSH--HHHHHHHTTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred HhCCCeEEEECCcc--HHHHHHHcCCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 332 343322111 1347776678888899999999998876 34577777766543
No 97
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=52.16 E-value=41 Score=28.45 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=65.4
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCC-----CCcCCcc
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (339)
+.++++. +..++++++.+|++|+++.++.. +.+. ...+... .-+......++.+++ .+++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSK--------TDER--SKVFDFS-TPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEEC-SCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcC--------CHhH--hhceecc-cchhhcceEEEEECCccccccCHHHhC
Confidence 3677888 99999999999999987643221 1111 0111111 112223334444332 1344443
Q ss_pred --EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 --RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 --~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-.. -..|+.+. +...+.+.|..++.+.+..+ .-.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHHH
Confidence 444433221 24566653 57788899999999998876 35677777665543
No 98
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=52.13 E-value=32 Score=28.68 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=63.0
Q ss_pred hCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCCcCCcc-
Q 019548 117 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK- 194 (339)
Q Consensus 117 ~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~- 194 (339)
.|+++++.- ..+-.++.+.|.+|++|+|++.......+.. ...|.+.++. +.+|-.|-|.. +..+++|+.
T Consensus 33 ~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l~---~~~l~~~~~~----~v~~~~hpla~-~~i~l~dL~~ 104 (218)
T 2y7p_A 33 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFF---QRRLFRHRYV----CMFRKDHPSAK-SPMSLKQFTE 104 (218)
T ss_dssp HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTEE---EEEEEEECEE----EEEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCccee---EEEeeeccEE----EEEcCCCCCCC-CCCCHHHHhh
Confidence 467765432 3455788999999999999975321111110 0111112221 22455566654 334555543
Q ss_pred --EEE-ecHH-HHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEecCHHHHH
Q 019548 195 --RVL-SHPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (339)
Q Consensus 195 --~Vy-SHpq-al~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~ 248 (339)
-|. ..+. ...+..+++.+.+.. ...++|...+..+|+.+ ...||.++.++.
T Consensus 105 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g---~Giailp~~~~~ 162 (218)
T 2y7p_A 105 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAV 162 (218)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHH
T ss_pred CCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCC---CEEEEcHHHHHH
Confidence 332 2221 223455566665543 34567776677777764 346666765543
No 99
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=51.60 E-value=14 Score=33.31 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=37.9
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C-CCccccCC-CHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P-KCETVPCD-EFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g-~~~~~~~~-si~~Vf~aV~~g~ad~gVVP 147 (339)
..+||+-| .||-+|...+.++ | ++++++.. ++.++..++.+|++|.+++|
T Consensus 96 GK~Iav~~-~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 96 EPALYVFG-NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp SCCEECSS-TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCEEEecC-CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 45888754 5787776544332 3 56777777 89999999999999999986
No 100
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=51.47 E-value=23 Score=32.81 Aligned_cols=82 Identities=13% Similarity=-0.055 Sum_probs=51.0
Q ss_pred ceEEEEECCCCcHHHHHHHHhC-C--C-----CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh----
Q 019548 97 KVRISFKGLPGSFSEDAALKAY-P--K-----CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---- 164 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f-g--~-----~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---- 164 (339)
..+|+|-.|.+|..|.+...++ . + .+.++..+..+++.+|.+|++|.+++... ++..+.
T Consensus 126 gk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p 196 (321)
T 3p7i_A 126 DLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAP 196 (321)
T ss_dssp GCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCH
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCc
Confidence 4589987776665566655422 2 1 22356778999999999999999998632 233222
Q ss_pred --cCCeEEEEEEEEeeeeeeccCCC
Q 019548 165 --RHRLHIVGEVQLAANFCLLALPG 187 (339)
Q Consensus 165 --~~~l~I~gEi~l~I~h~Ll~~~g 187 (339)
..++++.++...--.+.++.+++
T Consensus 197 ~~~~~lrvl~~s~~~p~~~i~~~k~ 221 (321)
T 3p7i_A 197 EKLKELKVIWKSPLIPGDPIVWRKN 221 (321)
T ss_dssp HHHTTEEEEEECSCBCCCEEEEETT
T ss_pred chhccEEEEEEcCCCCCCceeeeCC
Confidence 24688887543222344555554
No 101
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=51.04 E-value=1e+02 Score=25.20 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCC----cCCcc-
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIK----ADQLK- 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~----l~~I~- 194 (339)
+.++++. ++.++++++++|++|+ +.++-- +-+. ...+... .-+......++.+++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISW--------SEKR--ARQIDFT-PPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC--------CHHH--HTTEEEE-EEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccC--------CHhH--HhhcCCC-ccccccceEEEEECCCCCCCCHHHhCC
Confidence 3567765 7899999999999998 444331 1111 1122222 23445556677655432 33332
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHH
Q 019548 195 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (339)
Q Consensus 195 -~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~ 248 (339)
+|....-.. -..+|.+. ++..+.+.|..++.+++..+ .-.|++.....+.
T Consensus 118 ~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDGI--MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTSH--HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCch--HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 333222111 13567665 35788899999999998876 3557777776654
No 102
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=50.45 E-value=20 Score=33.18 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=39.5
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C-C---CccccCCCHHHHHHHHHhCCCCeEEEee
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P-K---CETVPCDEFEDTFKAVELWLADKAVLPI 148 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g-~---~~~~~~~si~~Vf~aV~~g~ad~gVVPi 148 (339)
..+|+| |+.||-+|.++..++ | + ...+++.+..+++.++.+|++|..+...
T Consensus 146 gk~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 146 GKRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp TSEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred CCEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 458886 678998888776554 2 1 2357899999999999999999998753
No 103
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=49.89 E-value=21 Score=35.28 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=33.5
Q ss_pred eEEEE--EEecCCcchHHHHHHHHHhCCceeeeeeeeeCC--CCCceEEEe
Q 019548 286 KTSIV--FTLDEGPGVLFKALAVFALREINLTKIESRPQR--KRPLRVVDD 332 (339)
Q Consensus 286 Ktsi~--~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~--~~~w~~~~~ 332 (339)
++... |.+.|+||.|.++-..|+++||++..+-.+|.. +..-++++-
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~ 407 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILL 407 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEE
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEE
Confidence 45554 556899999999999999999999998887753 223455543
No 104
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=49.83 E-value=24 Score=31.39 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=61.7
Q ss_pred hCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCCcCCcc-
Q 019548 117 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK- 194 (339)
Q Consensus 117 ~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~- 194 (339)
.++++++.. ..+-+++.+.+.+|++|+|++.......+... ..|.+.++.+ ..+-.|-|.. ...+++|+.
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----v~~~~hpl~~-~~i~~~dL~~ 201 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVC----MFRKDHPSAK-SPMSLKQFSE 201 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEE----EEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEE----EEeCCCCCcC-CCCCHHHHhc
Confidence 467655432 23446788999999999999864322122111 0111112221 1233343432 223344442
Q ss_pred --EE-EecHH-HHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 --RV-LSHPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 --~V-ySHpq-al~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
.| +..+. ......+|+...+.. ...++|......++..+ ...||.+...+..
T Consensus 202 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 260 (315)
T 1uth_A 202 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAVR 260 (315)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHHH
T ss_pred CCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHHH
Confidence 33 22221 123456777776543 34566766666667664 3467777766653
No 105
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=49.76 E-value=16 Score=36.72 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeee-eeeCCC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIE-SRPQRK 324 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIe-SRP~~~ 324 (339)
-..|++..+|+||.+.++...+.++|||+..+. +|..++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~ 493 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG 493 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC
Confidence 356778889999999999999999999999876 344333
No 106
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=49.40 E-value=22 Score=31.36 Aligned_cols=51 Identities=20% Similarity=0.020 Sum_probs=38.7
Q ss_pred CceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEee
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 148 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVPi 148 (339)
+..+||+. +.||.++...+.++.+.+++.. ++.+...++.+|++|.+++.-
T Consensus 102 kGK~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 102 DGKRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp TTCEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCCEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 34689986 4578788777767766666654 668999999999999988753
No 107
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=48.87 E-value=56 Score=27.16 Aligned_cols=144 Identities=12% Similarity=-0.044 Sum_probs=71.3
Q ss_pred CCCceEEEEECCCCcH-HHHHH---HHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCe
Q 019548 94 DGTKVRISFKGLPGSF-SEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL 168 (339)
Q Consensus 94 l~~~~~VayLGP~GTf-S~~AA---~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l 168 (339)
.+...+|++...-+++ --... .+.|+++++. -..+-.++.+.+.+|++|+|++.......+... ..|.+.++
T Consensus 17 ~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~---~~l~~~~~ 93 (241)
T 3oxn_A 17 CDQTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRS---EILGRVGV 93 (241)
T ss_dssp CCCEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEEE---EEEECCCE
T ss_pred CCceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCcccee---EEeecccE
Confidence 4566788875432221 11111 2346775543 234567889999999999999964322221111 11222233
Q ss_pred EEEEEEEEeeeeeeccCCCCCcCCc---cEEEecH--HHHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEE
Q 019548 169 HIVGEVQLAANFCLLALPGIKADQL---KRVLSHP--QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGA 240 (339)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~~I---~~VySHp--qal~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AA 240 (339)
.++ ++-.|-|.. ...+++++ .-|.-.+ ....+..+|+... .. ...++|...+..+++.+ ...|
T Consensus 94 ~~v----~~~~hpl~~-~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g---~gia 164 (241)
T 3oxn_A 94 LCL----LSKQHPLAN-QEMSLDDYLSHPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL---PIII 164 (241)
T ss_dssp EEE----EETTSGGGG-SCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C---CCEE
T ss_pred EEE----EeCCCCccc-CCCCHHHHhcCCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC---CeEE
Confidence 222 233444443 22333333 2332222 1123344455444 32 24567777777777764 4577
Q ss_pred ecCHHHHHH
Q 019548 241 VASARAAEI 249 (339)
Q Consensus 241 Ias~~AA~~ 249 (339)
|.+...+..
T Consensus 165 ilp~~~~~~ 173 (241)
T 3oxn_A 165 TVPADLAYL 173 (241)
T ss_dssp EEEHHHHHH
T ss_pred EcHHHHHHH
Confidence 778777664
No 108
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=47.77 E-value=1e+02 Score=25.89 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=64.9
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCCeEEEEEEEEeeeeeeccCCCC----CcCCcc
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALPGI----KADQLK 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~ 194 (339)
+.++++. ++.+++.++.+|++|+++.++.-+.+ -.+.+ ...++ +.....++.+++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~-----r~~~~~~s~p~-------~~~~~~~~~~~~~~~i~~~~dL~ 129 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEE-----RRKAIDFSDPY-------YDSGLAAMVQANNTTIKSIDDLN 129 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHH-----HHTTEEECSCC-------EEEEEEEEEETTCCSCCSSGGGT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHH-----HHcCcceecce-------eeccEEEEEECCCCCcCChHHhC
Confidence 3567775 67999999999999997755432211 01111 11122 2233444444332 233332
Q ss_pred --EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 --RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 --~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|..-.- ... ..||.+. ....+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 130 g~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 130 GKVIAAKTG-TAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp TSEEEEETT-SHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCEEEEeCC-ChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 3433221 122 3566664 57788899999999998876 35678877766554
No 109
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=46.05 E-value=1.7e+02 Score=26.69 Aligned_cols=133 Identities=12% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCceEEEEECCCCcHHHHH---H---HHh----CC-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHH--
Q 019548 95 GTKVRISFKGLPGSFSEDA---A---LKA----YP-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-- 161 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS~~A---A---~~~----fg-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlD-- 161 (339)
.++++|+.-+|-|+|--.+ | .+. .| ++++.+...-.+.+.++.+|++|++++... .+...+.
T Consensus 31 ~~~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~-----~~~~a~~g~ 105 (327)
T 4ddd_A 31 REYILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSD-----LEYYAYNGL 105 (327)
T ss_dssp CEEEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHH-----HHHHHHHTC
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcH-----HHHHHHhCc
Confidence 4567888877777774322 1 122 22 246667777889999999999999997532 1111110
Q ss_pred -Hh----hcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc--EE-EecHH--HHHHHHHHHHhcCCe-----eEecCCH
Q 019548 162 -LL----LRHRLHIVGEVQLAANFCLLALPGI---KADQLK--RV-LSHPQ--ALASSDIVLTQLGVA-----RENVDDT 223 (339)
Q Consensus 162 -lL----~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~V-ySHpq--al~QC~~~L~~~~~~-----~i~~~ST 223 (339)
-+ ...++..++-+.- -...|+++++. +++|++ +| +..+- .......+++..++. .++..+.
T Consensus 106 ~~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~ 184 (327)
T 4ddd_A 106 GFYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKS 184 (327)
T ss_dssp GGGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCH
T ss_pred CcccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCH
Confidence 01 1135776666543 34456655442 344443 34 32221 123345677766653 4677888
Q ss_pred HHHHHHHHhc
Q 019548 224 ASAAQYVASN 233 (339)
Q Consensus 224 A~AA~~v~~~ 233 (339)
+++...+..+
T Consensus 185 ~~a~~aL~~G 194 (327)
T 4ddd_A 185 SEQAQALCDN 194 (327)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8888888775
No 110
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=45.87 E-value=22 Score=33.83 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=32.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 323 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~ 323 (339)
+..|.+..+|+||-...+-+.++++|+|+..+......
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~ 49 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIR 49 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEET
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEEC
Confidence 34455667999999999999999999999999887654
No 111
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=45.61 E-value=1.3e+02 Score=24.91 Aligned_cols=135 Identities=10% Similarity=-0.036 Sum_probs=70.9
Q ss_pred CCCCceEEEEECCCCc-HHHHHH---HHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCC
Q 019548 93 NDGTKVRISFKGLPGS-FSEDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR 167 (339)
Q Consensus 93 ~l~~~~~VayLGP~GT-fS~~AA---~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~ 167 (339)
.....++|++...-+. +--.+. ++.|+++++. -..+-.++.+.+.+|++|+|++.... .+
T Consensus 24 ~~~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~~------------- 88 (238)
T 3onm_A 24 NMEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--DS------------- 88 (238)
T ss_dssp ---CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC---C-------------
T ss_pred CCceeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--CC-------------
Confidence 3566788887543222 222222 2346776543 34667889999999999999986431 11
Q ss_pred eEEEEEEEEeeeeeeccCCCCC---cCCccEEEe-cHHH-HHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeE
Q 019548 168 LHIVGEVQLAANFCLLALPGIK---ADQLKRVLS-HPQA-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAG 239 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~---l~~I~~VyS-Hpqa-l~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~A 239 (339)
+..+.......++++.++-. ...+.-|.- +... .....+|+.+.+.. ...++|...+..++..+ ...
T Consensus 89 --~~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi 163 (238)
T 3onm_A 89 --HPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGV 163 (238)
T ss_dssp --CCEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCB
T ss_pred --cceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeE
Confidence 11122222333444333222 233444433 2222 34556777776543 24567777777777764 346
Q ss_pred EecCHHHH
Q 019548 240 AVASARAA 247 (339)
Q Consensus 240 AIas~~AA 247 (339)
||.+...+
T Consensus 164 ailp~~~~ 171 (238)
T 3onm_A 164 TARPIEMM 171 (238)
T ss_dssp EEEEGGGC
T ss_pred EEechHHc
Confidence 66666544
No 112
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=45.14 E-value=19 Score=33.12 Aligned_cols=48 Identities=15% Similarity=-0.081 Sum_probs=35.8
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C----CCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g----~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ |.||.++.....++ | ++++++. ++.+++.++.+|++|.++++
T Consensus 119 Gk~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 119 GKKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp TSEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 358988 57888877665543 3 2455555 68899999999999998865
No 113
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=44.85 E-value=66 Score=27.63 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=62.6
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc--
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~-- 194 (339)
+.++++.+ +.++++++.+|++|+++-++.- +.+. ...+... .-+......++.+++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITI--------TDER--KQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBC--------CHHH--HTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcC--------CHHH--HhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 35677775 9999999999999998643221 1111 0111111 1112233445554432 233332
Q ss_pred EEEecHHHHHHHHHHHHhc---CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 RVLSHPQALASSDIVLTQL---GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ~VySHpqal~QC~~~L~~~---~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-. .. ..||.+. ....+.+.|..++.+++..+ .-.|++.....+..
T Consensus 149 ~i~~~~g~-~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNAT-TG-QEAAEKLFGKGPHIKKFETTVVAIMELLNG--GVDAVITDNAVANE 202 (272)
T ss_dssp CEEEETTS-HH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred eEEEEcCc-hH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 34333211 11 2455543 46677888999999988876 34577777765543
No 114
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=44.77 E-value=33 Score=30.54 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=51.7
Q ss_pred ceEEEEECCCCcHHHHHHHHhCCC----CccccCCCHHHHHHHHHh--CCCCeEEEeeeccCccchhhhHHHhhc----C
Q 019548 97 KVRISFKGLPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVEL--WLADKAVLPIENSSSGSIHRNYDLLLR----H 166 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~fg~----~~~~~~~si~~Vf~aV~~--g~ad~gVVPiENS~~G~V~~tlDlL~~----~ 166 (339)
..+|++ ..|+..+....+.+++ ...+.+.+.++.+++|.+ |++|+.+.. ..+++.+.+ .
T Consensus 170 g~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~---------~~~~~~~~~~~~~~ 238 (294)
T 2rc8_A 170 GFRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMD---------KALLDYEVSIDADC 238 (294)
T ss_dssp TCCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEE---------HHHHHHHHHTCSSS
T ss_pred CeEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEec---------HHHHHHHHhhCCCC
Confidence 457777 5688777766666653 234568999999999999 999988864 223343322 2
Q ss_pred CeEEEEEEEEeeeeeeccCCC
Q 019548 167 RLHIVGEVQLAANFCLLALPG 187 (339)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g 187 (339)
++.+.++..-+..+.++.+++
T Consensus 239 ~l~~~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 239 KLLTVGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp CEEECSCCEEEEEECCEECTT
T ss_pred CEEEcCCcccccceEEEecCC
Confidence 477776544444455555443
No 115
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=44.48 E-value=16 Score=31.06 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.2
Q ss_pred eEEEEE-EecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 286 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 286 Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
+.|++= ...+.||.+.++++.|++.|||...|-+. ...-.++|+..
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~istS---e~~Is~vV~~~ 143 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELISTS---EIRISVLIRED 143 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEE---TTEEEEEEEGG
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEcC---CCeEEEEEeHH
Confidence 445442 35789999999999999999999998532 34445665543
No 116
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=44.08 E-value=17 Score=31.31 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=35.5
Q ss_pred eEEEE-EEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 286 KTSIV-FTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 286 Ktsi~-~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
|.|++ -...+.||.+.++++.+++.|||...|- +......++|+..
T Consensus 98 ~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is---tSei~Is~vV~~~ 144 (181)
T 3s1t_A 98 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS---TSEIRISVLCRDT 144 (181)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE---EETTEEEEEEEGG
T ss_pred EEEEEecccccCchHHHHHHHHHHHCCCcEEEEE---cCCCEEEEEEeHH
Confidence 55555 3457899999999999999999988886 3355667777654
No 117
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=43.70 E-value=1.9e+02 Score=26.21 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=66.6
Q ss_pred CceEEEEEC-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cCC
Q 019548 96 TKVRISFKG-LPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHR 167 (339)
Q Consensus 96 ~~~~VayLG-P~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~~ 167 (339)
...+|++.+ |....-+. +.+.| | +++++.+.+..+.-.++.+|++|.+..=.. +.++.+. ..+
T Consensus 4 ~~i~VG~~~~p~~~i~~~-v~~~l~k~Gi~veiv~F~dy~~pN~AL~~G~iD~n~fQh~--------pyl~~~~k~~g~~ 74 (246)
T 4ef1_A 4 SVLKVGASPVPHAEILEH-VKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHV--------PFFNEAVKENDYD 74 (246)
T ss_dssp EEEEEEECTTTHHHHHHH-HHHHHHHTTEEEEEEECSSSSHHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHTCC
T ss_pred cEEEEEEeCCChHHHHHH-HHHHHHhcCCEEEEEEeCCchhHHHHHHCCCCCEEecCCH--------HHHHHHHHHCCCC
Confidence 357899883 43332223 33444 2 368899999999999999999999886322 3344442 357
Q ss_pred eEEEEEEEEeeeeeeccCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcC
Q 019548 168 LHIVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLG 214 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--Hpqal~QC~~~L~~~~ 214 (339)
|..+|.+.+.- ..|.+.+-.+++|++ +|.- -|--.+..-..|.+.|
T Consensus 75 Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~G 125 (246)
T 4ef1_A 75 FVNAGAIHLEP-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAG 125 (246)
T ss_dssp EEEEEEEEECC-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTT
T ss_pred EEEEeeccccc-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCC
Confidence 88887765543 456666656788887 4432 2222233345565544
No 118
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=43.02 E-value=1.8e+02 Score=25.73 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=71.4
Q ss_pred ceEEEEECCCCc-HHHHHH---HHhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEE
Q 019548 97 KVRISFKGLPGS-FSEDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIV 171 (339)
Q Consensus 97 ~~~VayLGP~GT-fS~~AA---~~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~ 171 (339)
..+|++...-+. +--... .+.++++++.. ..+..++.+.+.+|++|+|++.......+... ..|.+.++.
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~-- 165 (313)
T 2h98_A 91 TLRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR---IMLHKEQLK-- 165 (313)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE--
T ss_pred EEEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCCCCCCeeE---EEeeeCcEE--
Confidence 677777543332 111111 23467765433 34568999999999999999854321111110 001111111
Q ss_pred EEEEEeeeeeecc-CCC-CCcCCc---cEEEecH----HHHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeE
Q 019548 172 GEVQLAANFCLLA-LPG-IKADQL---KRVLSHP----QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAG 239 (339)
Q Consensus 172 gEi~l~I~h~Ll~-~~g-~~l~~I---~~VySHp----qal~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~A 239 (339)
+..+-.|-|.. ... .+++|+ .-|.-.+ ....+..+|+...+.. ...++|...+..++..+ ...
T Consensus 166 --~v~~~~hpl~~~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Gi 240 (313)
T 2h98_A 166 --LAIHKHHHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAG---EGV 240 (313)
T ss_dssp --EEEETTSGGGGGTTSCBCGGGGTTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHTT---SCB
T ss_pred --EEEcCCCcccccCCCCcCHHHHcCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHcC---CcE
Confidence 12334455544 322 344444 3444222 1234456677765542 35567777777777764 346
Q ss_pred EecCHHHH
Q 019548 240 AVASARAA 247 (339)
Q Consensus 240 AIas~~AA 247 (339)
|+.+...+
T Consensus 241 a~lp~~~~ 248 (313)
T 2h98_A 241 CIVPASAM 248 (313)
T ss_dssp EEEEGGGG
T ss_pred EEeehhhh
Confidence 66666544
No 119
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=42.28 E-value=1.3e+02 Score=24.06 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=69.9
Q ss_pred CCceEEEEECCCCcH-HHHHH---HHhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeE
Q 019548 95 GTKVRISFKGLPGSF-SEDAA---LKAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLH 169 (339)
Q Consensus 95 ~~~~~VayLGP~GTf-S~~AA---~~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~ 169 (339)
....+|++...-+.+ --... .+.++++++.. ..+-.++.+.+.+|++|+|++.-.....|
T Consensus 7 ~g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~~--------------- 71 (222)
T 4ab5_A 7 AGELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNG--------------- 71 (222)
T ss_dssp TEEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCTT---------------
T ss_pred cceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcCC---------------
Confidence 445677765433322 11111 22356644322 23446789999999999999853322111
Q ss_pred EEEEEEEeeeeeeccCCC--------CCcCCc---cEEEe-cH-HHHHHHHHHHHhcCCe--eEecCCHHHHHHHHHhcC
Q 019548 170 IVGEVQLAANFCLLALPG--------IKADQL---KRVLS-HP-QALASSDIVLTQLGVA--RENVDDTASAAQYVASNG 234 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g--------~~l~~I---~~VyS-Hp-qal~QC~~~L~~~~~~--~i~~~STA~AA~~v~~~~ 234 (339)
+..+.......++++.++ .+++|+ .-|.- .. ....+..+|+.+.+.. ...++|...+..++..+
T Consensus 72 ~~~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g- 150 (222)
T 4ab5_A 72 ISFQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR- 150 (222)
T ss_dssp EEEEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT-
T ss_pred eEEEEeecCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC-
Confidence 112222222333333222 233333 33432 21 2224556666665433 45677777777777764
Q ss_pred CCCeEEecCHHHHHH
Q 019548 235 LRDAGAVASARAAEI 249 (339)
Q Consensus 235 ~~~~AAIas~~AA~~ 249 (339)
...+|.+...+..
T Consensus 151 --~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 151 --RGIAALPYWTVMP 163 (222)
T ss_dssp --SCBEEEEHHHHHH
T ss_pred --CeEEEcchHHhHH
Confidence 4577777776654
No 120
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=42.00 E-value=1.3e+02 Score=23.99 Aligned_cols=139 Identities=14% Similarity=0.055 Sum_probs=70.8
Q ss_pred CceEEEEECCCCc-H-HHHH--HHHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEE
Q 019548 96 TKVRISFKGLPGS-F-SEDA--ALKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHI 170 (339)
Q Consensus 96 ~~~~VayLGP~GT-f-S~~A--A~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I 170 (339)
...+|++...-+. + ...- -++.|+++++. -..+-.++.+.+.+|++|+|++.-.....+... ..|.+.++.+
T Consensus 5 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~ 81 (209)
T 2ql3_A 5 GPIAVGCYPALGPTILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQT---VPLMTREPMV 81 (209)
T ss_dssp EEEEEEECGGGTTTTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEEE---EEEEEECCEE
T ss_pred eeEEEeechhhhhhhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCceE---EEeecCceEE
Confidence 4567776544332 2 2211 12346775443 345678899999999999999864322111111 1111222222
Q ss_pred EEEEEEeeeeeeccCC-CCCcCCc---cEEEecHHHH-HHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEec
Q 019548 171 VGEVQLAANFCLLALP-GIKADQL---KRVLSHPQAL-ASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVA 242 (339)
Q Consensus 171 ~gEi~l~I~h~Ll~~~-g~~l~~I---~~VySHpqal-~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIa 242 (339)
.++-.|-|...+ ..+++|+ .-|...+... .+..+|+.+.+.. ...++|...+..+++.+ ...|+.
T Consensus 82 ----v~~~~hpl~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gi~~l 154 (209)
T 2ql3_A 82 ----VLGAEHPLAGVDGPVRLADLAEHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRG---LGWTLL 154 (209)
T ss_dssp ----EEETTCGGGGCCSCBCGGGGTTSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHT---SCBEEE
T ss_pred ----EEeCCCccccCCCCcCHHHHhCCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcC---CeEEEe
Confidence 234445454433 3444444 3443322222 3455667665542 35567777777777765 335555
Q ss_pred CH
Q 019548 243 SA 244 (339)
Q Consensus 243 s~ 244 (339)
+.
T Consensus 155 p~ 156 (209)
T 2ql3_A 155 LQ 156 (209)
T ss_dssp SC
T ss_pred eC
Confidence 54
No 121
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=41.99 E-value=78 Score=27.37 Aligned_cols=140 Identities=13% Similarity=0.053 Sum_probs=69.8
Q ss_pred CCceEEEEECCCCcHH-HHHH---HHhCCCCccc-cCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cCCe
Q 019548 95 GTKVRISFKGLPGSFS-EDAA---LKAYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRL 168 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS-~~AA---~~~fg~~~~~-~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~~l 168 (339)
....+|++...-+.+- -... .+.++++++. -..+-.++.+.+.+|++|+|++.-.....+... ..|. +..+
T Consensus 94 ~g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~ 170 (306)
T 3fzv_A 94 AGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIET---EPLMPPQRP 170 (306)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEEE---EESSCCBCC
T ss_pred CceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccce---eeeeecccc
Confidence 4567888754333211 1111 2346665442 235677889999999999999864332222111 1111 2222
Q ss_pred EEEEEEEEeeeeeeccCCCCCcC---CccEEEec-HHHHHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEe
Q 019548 169 HIVGEVQLAANFCLLALPGIKAD---QLKRVLSH-PQALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAV 241 (339)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~g~~l~---~I~~VySH-pqal~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAI 241 (339)
.+ .++-.|-|...+..+++ +-..|... +..-....+|+.+.+.. ...++|...+..++..+ ...|+
T Consensus 171 ~~----v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~ 243 (306)
T 3fzv_A 171 HA----LLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG---FGFSL 243 (306)
T ss_dssp EE----EEETTCTTTTSSEECHHHHTTSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT---SCBEE
T ss_pred EE----EecCCCcccCCCCCCHHHHcCCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC---CCEEE
Confidence 22 23455555543322222 33344432 22234455666665542 34566666666666654 33455
Q ss_pred cCH
Q 019548 242 ASA 244 (339)
Q Consensus 242 as~ 244 (339)
.+.
T Consensus 244 lp~ 246 (306)
T 3fzv_A 244 LVT 246 (306)
T ss_dssp ECC
T ss_pred Eec
Confidence 444
No 122
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=41.09 E-value=1.6e+02 Score=24.85 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=61.6
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCCeEEEEEEEEeeeeeeccCCC-----CCcCCcc
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (339)
.++++. ++.++++++.+|++|.++-++--+-+. -..+ ...++. .....++.+.+ .+++|++
T Consensus 70 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r-----~~~~~fs~p~~-------~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 70 LNITEY-AWDGMLGAVASGQADVAFSGISITDKR-----KKVIDFSEPYY-------INSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHH-----HTTEEECCCSE-------EEEEEEEEETTSCCCCCSGGGGG
T ss_pred EEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHH-----hhccccccchh-------hCceEEEEEcCCCCCCCCHHHhC
Confidence 677887 899999999999999987654322110 0111 111221 12233333221 1334442
Q ss_pred --EEEecHHH--HHHHHHHHHhcC----CeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 --RVLSHPQA--LASSDIVLTQLG----VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 --~VySHpqa--l~QC~~~L~~~~----~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-. ...-.+++...+ ...+.+.|..++.+.+..+ .-.|++.....+..
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 197 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNG--NLDLAFIEEPVYFT 197 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 34332211 111222232223 5678888999999998886 35577777766543
No 123
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=40.41 E-value=15 Score=30.55 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=30.8
Q ss_pred ecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 293 LDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 293 ~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
.+++||.+.++++.|+++|||.-.|-+-+ ....|.++.+
T Consensus 28 m~~~~g~~~~if~~La~~~I~vd~I~~s~---~~Isf~v~~~ 66 (157)
T 3mah_A 28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE---VGVSLTIDND 66 (157)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSCEECCS---SEEEEEESCC
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEEecC---CEEEEEECCh
Confidence 36789999999999999999999887543 3466666643
No 124
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=40.34 E-value=1.7e+02 Score=24.67 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=49.2
Q ss_pred ceEEEEECCCCcHHHHHHHHh---CCC-C-ccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhc---CCe
Q 019548 97 KVRISFKGLPGSFSEDAALKA---YPK-C-ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR---HRL 168 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~---fg~-~-~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~---~~l 168 (339)
..+|++. .||..+....++ .+. . ......+.++++.+|.+|++|+.+.. ..+++.+.+ .++
T Consensus 118 g~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---------~~~~~~~~~~~~~~~ 186 (243)
T 4gvo_A 118 GKRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---------PFAVDFQNKTSAIKE 186 (243)
T ss_dssp TCEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---------HHHHHHHHHTCSSCE
T ss_pred CCeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---------HHHHHHHHhhCCCce
Confidence 3588875 467666554433 232 2 23567899999999999999976531 123333332 246
Q ss_pred EEEEEEEEeeeeeeccCC
Q 019548 169 HIVGEVQLAANFCLLALP 186 (339)
Q Consensus 169 ~I~gEi~l~I~h~Ll~~~ 186 (339)
.+.++..-+...+++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~k 204 (243)
T 4gvo_A 187 KVVGDVLSNAKVYFMLGK 204 (243)
T ss_dssp EEEEEEEECCEECCEECT
T ss_pred EEeccCCCCCcEEEEEeC
Confidence 778877666666666554
No 125
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=39.23 E-value=2.1e+02 Score=25.53 Aligned_cols=131 Identities=17% Similarity=0.060 Sum_probs=71.0
Q ss_pred CCceEEEEECCCCcHHHHHHHH--hC---C-CCccccCCCH-HHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcC
Q 019548 95 GTKVRISFKGLPGSFSEDAALK--AY---P-KCETVPCDEF-EDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRH 166 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS~~AA~~--~f---g-~~~~~~~~si-~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~ 166 (339)
..+++|+|..-.+...-..|.. +| | +++++++.+- ..++.+|.+|++|+++.... ..+... ...
T Consensus 14 ~~~l~ig~~~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~ 85 (321)
T 2x7q_A 14 LPTLKVAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTE--------AFIADIAKGN 85 (321)
T ss_dssp CCCEEEEECCSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHTTC
T ss_pred CceEEEEeeCCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcH--------HHHHHHHCCC
Confidence 3468999973323222223332 34 2 3567777664 35899999999999986532 122222 223
Q ss_pred C-eEEEEEEEE-eeeeeeccCCC----CCcCCccEEEecH-HHHH-HHHHHH-HhcCC----eeEecCCHHHHHHHHHhc
Q 019548 167 R-LHIVGEVQL-AANFCLLALPG----IKADQLKRVLSHP-QALA-SSDIVL-TQLGV----ARENVDDTASAAQYVASN 233 (339)
Q Consensus 167 ~-l~I~gEi~l-~I~h~Ll~~~g----~~l~~I~~VySHp-qal~-QC~~~L-~~~~~----~~i~~~STA~AA~~v~~~ 233 (339)
+ +.+++-+.- |....++++++ .+++|+|+|.... -.-. ....+| ++.++ +.+.+.+.+++...+..+
T Consensus 86 ~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 86 ENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TTEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred CcEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 5 777766542 22234665432 2445567776553 2111 123344 44453 556676777777666654
No 126
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=36.67 E-value=1.3e+02 Score=27.30 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=52.6
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cCCeEEEEEEEEeeeeeeccCCCC----CcCCcc-
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALPGI----KADQLK- 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~~l~I~gEi~l~I~h~Ll~~~g~----~l~~I~- 194 (339)
+++++..+-.++.++|.+|++|+|+.... ..+-... ..++++++-+.-.-...++..++. +++|.+
T Consensus 40 Vei~~~~~~~~~~~al~sG~~D~g~~~~~--------~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 40 IAILEPSNPSDVTELVGSGKVDMGLKAMV--------GTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp EEEEEESSGGGHHHHHHHTSSSEEEEEHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTT
T ss_pred EEEEeCCChHHHHHHHHcCCcCEEEecHH--------HHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhCC
Confidence 68888999999999999999999986433 2232222 346777766554333445543321 233333
Q ss_pred -EEE-ecHHHHHHHHHHHHhcCC
Q 019548 195 -RVL-SHPQALASSDIVLTQLGV 215 (339)
Q Consensus 195 -~Vy-SHpqal~QC~~~L~~~~~ 215 (339)
+|. ...-....-+.+|++.+.
T Consensus 112 K~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 112 KRIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp CEEEESSSHHHHHHHHHHGGGTC
T ss_pred CEEEecCCchHHHHHHHHHHcCC
Confidence 443 222334566788887653
No 127
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=35.99 E-value=22 Score=29.72 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=64.5
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCCeEEEEEEEEeeeeeeccCCC-----CCcCCcc
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (339)
.++++. ++.+++.++++|++|.++.++.-+-+ --+.+ ...++. .....++.+++ .+++|++
T Consensus 56 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~~fs~p~~-------~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 56 LVVVPT-SWPNLMRDFADDRFDIAMSGISINLE-----RQRQAYFSIPYL-------RDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHH-----HHTTCEECSCSE-------EECEEEEEEGGGGGGGSSHHHHS
T ss_pred eEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHH-----HcCccccchHHh-------ccCcEEEEECCcccccCCHHHhc
Confidence 577777 89999999999999987644321111 01111 111221 22233443322 1344443
Q ss_pred ----EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHc
Q 019548 195 ----RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 250 (339)
Q Consensus 195 ----~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~y 250 (339)
+|....... -..||.+. +...+.+.|..++.+++..+ .-.|+|.....+..+
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARLQ 180 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHHH
Confidence 554433221 13466653 57788889999999988876 355788777766543
No 128
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=35.25 E-value=61 Score=31.73 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=35.7
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEE
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVD 331 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~ 331 (339)
...|.+.-.|.||.|.++-+.|+++|||.....++-. ..+-|.+
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~--~~~~y~~ 386 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTD--GEVGYLV 386 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEEC--SSCEEEE
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCC--CceEEEE
Confidence 5677777789999999999999999999999887643 3455554
No 129
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=35.06 E-value=13 Score=32.06 Aligned_cols=113 Identities=8% Similarity=-0.081 Sum_probs=59.7
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCC---CCcCCcc--E
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG---IKADQLK--R 195 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g---~~l~~I~--~ 195 (339)
.++++++ +.+++.++.+|++|+++-++ ..|.+.-. .+.... -+......++++++ .+++|++ +
T Consensus 62 ~~~~~~~-~~~~~~~l~~g~~D~~~~~~--------~~t~~r~~--~~~fs~-p~~~~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 62 VEWQAID-WDMKETELKNGTIDLIWNGY--------SVTDERKQ--SADFTE-PYMVNEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEECC-GGGHHHHHHHTSCSEECSSC--------BCCHHHHT--TCEECC-CCEEECEEEEEEGGGCCCSSGGGTTCC
T ss_pred EEEEECC-HHHHHHHHHCCCCCEEEecC--------ccCHHHHh--cCcCcH-HHeeCceEEEEECCCCCCCHHHhCCCE
Confidence 5677774 99999999999999876222 11222111 111111 11222334444332 1233332 2
Q ss_pred EEecHHHHHHHHHHHHhc---------CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 196 VLSHPQALASSDIVLTQL---------GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~---------~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
|..-.- ... ..+|.+. +...+.+.|..++.+++..+ .-.|+|.....+..
T Consensus 130 i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 130 LGAQAG-SSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSG--RIDGLLIDRVYANY 188 (268)
T ss_dssp EEEETT-CHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEeC-Cch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcC--CCCEEEeCHHHHHH
Confidence 322111 111 2233322 25678889999999999886 35678877766543
No 130
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=34.99 E-value=2.4e+02 Score=24.95 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=77.5
Q ss_pred CceEEEEE-CCCC-cHHHHHHHHhCC---CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhc-CCeE
Q 019548 96 TKVRISFK-GLPG-SFSEDAALKAYP---KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR-HRLH 169 (339)
Q Consensus 96 ~~~~VayL-GP~G-TfS~~AA~~~fg---~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~-~~l~ 169 (339)
...||+++ ||.+ .+-+..-...++ ++++..+.+.+++.+++.+|++|++++|.. ...-+..+ .+++
T Consensus 5 ~~irvg~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~~~ 76 (283)
T 3hn0_A 5 TVIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMI--------NAANLYNKGIKIK 76 (283)
T ss_dssp CEEEEEEESSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHH--------HHHHHHHTTCSCE
T ss_pred ceEEEEecCCCcHHHHHHHHhccccccCccEEEEEeCCHHHHHHHHHCCCCCEEEEcHH--------HHHHHHHCCCCeE
Confidence 46899998 4421 111211111121 257888999999999999999999998743 11122222 2566
Q ss_pred EEEEEEEeeeeeeccCCCCCcCCccEEEec-H--HHHHHHHHHHHhcC--CeeEecC-CHHHHHHHHHhcCCCCeEEecC
Q 019548 170 IVGEVQLAANFCLLALPGIKADQLKRVLSH-P--QALASSDIVLTQLG--VARENVD-DTASAAQYVASNGLRDAGAVAS 243 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~g~~l~~I~~VySH-p--qal~QC~~~L~~~~--~~~i~~~-STA~AA~~v~~~~~~~~AAIas 243 (339)
|.+-...- ...|++++. +.. |+|... + -+.---+.+|++.+ ++.+.+. +.+++...+..++ -+++.+..
T Consensus 77 i~~~~~~g-~~~lv~~~~--LkG-K~Iav~~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~-vDa~~~~e 151 (283)
T 3hn0_A 77 LAGCPIWG-TLYLVEKTP--LKE-PALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGK-VNRAVLGE 151 (283)
T ss_dssp EEEEEECC-CCEEEECSS--CCS-CCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTS-CSEEEECT
T ss_pred EEEEeccc-EEEEEecCC--CCC-CEEEecCCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCC-CCEEEecc
Confidence 66543321 123455432 332 466632 2 23445677888776 4555555 6777777666652 45555544
Q ss_pred HHH
Q 019548 244 ARA 246 (339)
Q Consensus 244 ~~A 246 (339)
+.+
T Consensus 152 P~~ 154 (283)
T 3hn0_A 152 PFL 154 (283)
T ss_dssp THH
T ss_pred cHH
Confidence 443
No 131
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=34.81 E-value=77 Score=26.51 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=64.0
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCCeEEEEEEEEeeeeeeccCCC-----CCcCCcc
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~g-----~~l~~I~ 194 (339)
.++++. ++..++.++.+|++|..+-++-.+.+ -...+ ...++ +.....++++++ .+++|++
T Consensus 46 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~-----r~~~~~~s~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 46 LKLVPT-SWDGLIPGLVTEKFDIIISGMTISQE-----RNLRVNFVEPY-------IVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH-----HHTTSEECSCS-------EEECEEEEEETTTTTTCCSGGGGC
T ss_pred EEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHH-----HHhhcCcchhh-------heeceEEEEECCcccccCCHHHhc
Confidence 566775 69999999999999986533321111 00111 11122 222334444443 2345554
Q ss_pred ----EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 ----RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ----~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....-. .. ..+|.+. ++..+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 113 ~~g~~i~v~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 169 (245)
T 3k4u_A 113 KPELTLVTKFGV-SA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNVA 169 (245)
T ss_dssp CSSCEEEEETTS-HH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHHH
T ss_pred cCCcEEEEeCCc-HH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHHH
Confidence 34333222 22 3466553 67888999999999998876 45688888755543
No 132
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=34.75 E-value=1.2e+02 Score=27.39 Aligned_cols=149 Identities=20% Similarity=0.153 Sum_probs=85.9
Q ss_pred CCceEEEEE-CCCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cC
Q 019548 95 GTKVRISFK-GLPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RH 166 (339)
Q Consensus 95 ~~~~~VayL-GP~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~ 166 (339)
....+||+. ||....-+.+...+. | +++++.+.+..+.-.|+.+|++|....-.. +.++.+. .+
T Consensus 5 ~~~ikVG~~~~p~~~il~~~~~~l~~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~g~ 76 (237)
T 3k2d_A 5 TSKVKVGVMAGAEAQVAEVAAKVAKEKYGLDVELVTFTDYVTPNAALDDGSIDMNAFQHK--------PYLDRQVEDRDY 76 (237)
T ss_dssp CCCEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHHTSCSEEEEEEH--------HHHHHHHHHHCC
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHhcCCEEEEEEeCChHhHHHHHHcCCCCeeccCCH--------HHHHHHHHHCCC
Confidence 356899998 443332222322222 3 468999999999999999999999886432 3444443 25
Q ss_pred CeEEEEEEEEeeeeeeccCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcCC-----------------------eeE
Q 019548 167 RLHIVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLGV-----------------------ARE 218 (339)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--Hpqal~QC~~~L~~~~~-----------------------~~i 218 (339)
+|..+|.+.+.- ..|.+.+-.+++|++ +|.- -|--.+..-..|.+.|. +++
T Consensus 77 ~lv~v~~~~~~p-~glYS~k~ksl~dL~~Ga~IaipnD~tN~~RaL~lL~~aGLIkLk~~~~~~~t~~DI~~Npk~lk~~ 155 (237)
T 3k2d_A 77 KLTIAGNTFVYP-IAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQGLIKLRPEVGLLATVRDIVENPKNITIM 155 (237)
T ss_dssp CEEEEEECCCCC-CEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCSSCCGGGEEECTTCCEEE
T ss_pred CEEEEeeecccc-eEEecCCCCCHHHhcCCCEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCCCHHHHhCCCCCCEEE
Confidence 677777654432 456676656788887 4443 33333444445555432 122
Q ss_pred ecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeec
Q 019548 219 NVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILAD 257 (339)
Q Consensus 219 ~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~ 257 (339)
++ +|+++.+.-++-+ ||+.+..-|..-||....+
T Consensus 156 e~----~aaql~r~l~dvD-~avin~nya~~agl~p~~d 189 (237)
T 3k2d_A 156 EL----DAAQLPRSLDDVA-LSIINTTYASSINLTPEKD 189 (237)
T ss_dssp EE----CGGGHHHHTTTSS-EEEECHHHHGGGTCCHHHH
T ss_pred Ec----CHHHHhhhccCcc-EEEecccHHHHcCCCcccc
Confidence 22 3455555444444 5555555566678865433
No 133
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=33.94 E-value=37 Score=32.91 Aligned_cols=111 Identities=11% Similarity=0.078 Sum_probs=59.5
Q ss_pred eeEecCCHHHHHHHHHhcCCCCeEEecCHHH---HHHcCCceeeccccCCCCCeeeEEEEee----CCCCCCC--CCCce
Q 019548 216 ARENVDDTASAAQYVASNGLRDAGAVASARA---AEIYGLNILADRIQDEPDNITRFLVLAR----DPIIPRT--DKLFK 286 (339)
Q Consensus 216 ~~i~~~STA~AA~~v~~~~~~~~AAIas~~A---A~~ygL~il~~~IeD~~~N~TRF~vi~~----~~~~p~~--~~~~K 286 (339)
+.++.-|..++.+++..+. -+-...| |..+|.++.-.+-.+. .-=|.|.--.. +....++ ...+-
T Consensus 191 ~~i~~is~~e~~el~~~Ga-----~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~~ 264 (421)
T 3ab4_A 191 QKLEKLSFEEMLELAAVGS-----KILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKSE 264 (421)
T ss_dssp CBCSEECHHHHHHHHHTTC-----CSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECSE
T ss_pred eEccccCHHHHHHHHhcCC-----cCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCCE
Confidence 3444445566666554321 1122222 3447887766665443 44465531000 0101111 12234
Q ss_pred EEEEEE-ecCCcchHHHHHHHHHhCCceeeeeeeeeCC---C--CCceEEEec
Q 019548 287 TSIVFT-LDEGPGVLFKALAVFALREINLTKIESRPQR---K--RPLRVVDDS 333 (339)
Q Consensus 287 tsi~~~-~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~---~--~~w~~~~~~ 333 (339)
+.|.+. ++++||.+.++++.|+++|||.-.|-- ++. . ..-.|.++.
T Consensus 265 ~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~~g~~~isf~v~~ 316 (421)
T 3ab4_A 265 AKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVEDGTTDITFTCPR 316 (421)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC--CCEEEEEEEEET
T ss_pred EEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-cCccccCCcceEEEEEec
Confidence 445444 789999999999999999999998842 222 1 245566654
No 134
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=32.98 E-value=1.5e+02 Score=26.18 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=83.0
Q ss_pred CceEEEEECCCCcHHHHHHHHhC--C----C----CccccC---------CCHHHHHHHHHhCCCCeEEEeeeccCccch
Q 019548 96 TKVRISFKGLPGSFSEDAALKAY--P----K----CETVPC---------DEFEDTFKAVELWLADKAVLPIENSSSGSI 156 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~f--g----~----~~~~~~---------~si~~Vf~aV~~g~ad~gVVPiENS~~G~V 156 (339)
.+++||.. +|.-.+.+..-+- | . -++++. --..|+-..|+.|.+|+||+=
T Consensus 4 ~~L~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~R~l~~~~~~~i~~~~~R~~DIp~yV~~G~~DlGItG--------- 72 (206)
T 1ve4_A 4 FALTVALP--KGRMFREAYEVLKRAGLDLPEVEGERTLLHGKEGGVALLELRNKDVPIYVDLGIAEIGVVG--------- 72 (206)
T ss_dssp SSEEEEEE--CSTTHHHHHHHHHHTTCCCCCC-----CEECCTTSEEEEEECGGGHHHHHHTTSSSEEEEE---------
T ss_pred ccEEEEEc--CcccHHHHHHHHHHcCCCCcCCCCCcceEecCCCCeEEEEECchhHHHHHhCCCccEEEee---------
Confidence 45788884 8998887754320 1 1 112222 223689999999999999973
Q ss_pred hhhHHHhhcCCeEEEEEEEEeeeee---eccCCC-CCcCCccEEEecHHHHHHHHHHHHhcC--CeeEecCCHHHHHHHH
Q 019548 157 HRNYDLLLRHRLHIVGEVQLAANFC---LLALPG-IKADQLKRVLSHPQALASSDIVLTQLG--VARENVDDTASAAQYV 230 (339)
Q Consensus 157 ~~tlDlL~~~~l~I~gEi~l~I~h~---Ll~~~g-~~l~~I~~VySHpqal~QC~~~L~~~~--~~~i~~~STA~AA~~v 230 (339)
.|.|.+++..+.--..|...+| +++.++ .++ =++|.+..--+. ++|+++++ ++.+..+-..|+|=.+
T Consensus 73 ---~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~--~~RIATkyp~l~--~~yf~~~gi~~~ii~l~GsvE~ap~~ 145 (206)
T 1ve4_A 73 ---KDVLLDSGRDLFEPVDLGFGACRLSLIRRPGDTGP--IRRVATKYPNFT--ARLLKERGWAADVVELSGNIELAAVT 145 (206)
T ss_dssp ---HHHHHHCCSCCEEEEECCCSCEEEEEEECTTCCSC--CCEEEESCHHHH--HHHHHHTTCCCEEEECSSCTHHHHHT
T ss_pred ---eeeeeecCCCeEEeeccccCcEEEEEEEECCcccC--CCEEEECchHHH--HHHHHHCCCcEEEEECCCceeeccCC
Confidence 5777777433444456655565 334433 223 456666655454 78999875 4566665555555322
Q ss_pred HhcCCCC-eEEe-cCHHHHHHcCCceee
Q 019548 231 ASNGLRD-AGAV-ASARAAEIYGLNILA 256 (339)
Q Consensus 231 ~~~~~~~-~AAI-as~~AA~~ygL~il~ 256 (339)
- ..+ .+=| .+-..-+.+||+++.
T Consensus 146 G---lAD~IvDivsTG~TLraNgL~~ie 170 (206)
T 1ve4_A 146 G---LADAVVDVVQTGATLRAAGLVEVE 170 (206)
T ss_dssp T---SSSEEEEEESSSHHHHHTTCEEEE
T ss_pred C---CceEEEEeccCHHHHHHCCCEEeE
Confidence 1 111 1112 456667889999885
No 135
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=32.94 E-value=59 Score=31.50 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeee
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 321 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP 321 (339)
...|++.-.|+||.+.++-+.|+++|||.......-
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r 366 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT 366 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC
Confidence 345777778999999999999999999997766543
No 136
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=32.70 E-value=56 Score=29.32 Aligned_cols=48 Identities=17% Similarity=0.078 Sum_probs=36.1
Q ss_pred ceEEEEECCCCcHHHHHHHHhC---C----CCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGLPGSFSEDAALKAY---P----KCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP~GTfS~~AA~~~f---g----~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
..+|++ |.||.++.....++ | ++++++. ++.+++.++.+|++|.++++
T Consensus 131 Gk~i~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 131 GKRIAF--QKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp TCEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred CCEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 368887 47998887655543 3 2456666 79999999999999988775
No 137
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=32.68 E-value=2e+02 Score=23.44 Aligned_cols=121 Identities=9% Similarity=0.066 Sum_probs=61.8
Q ss_pred HhCCCCcccc-CCCHHHHHHHHHhCCCCeEEEeeec-cCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCCcCCc
Q 019548 116 KAYPKCETVP-CDEFEDTFKAVELWLADKAVLPIEN-SSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL 193 (339)
Q Consensus 116 ~~fg~~~~~~-~~si~~Vf~aV~~g~ad~gVVPiEN-S~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I 193 (339)
+.|+++++.. ..+..++.+.+.+|++|+|++.-.. ...+... ..|.+.++. +.++-.|-|......+++|+
T Consensus 38 ~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~~---~~l~~~~~~----~v~~~~hpla~~~~i~~~dL 110 (228)
T 2fyi_A 38 ELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA---FPWFRWHHS----LLVPHDHPLTQISPLTLESI 110 (228)
T ss_dssp HHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEEE---EEEEEECEE----EEEETTCGGGTSSSCCHHHH
T ss_pred HHCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCceE---EEeeecceE----EEecCCCCccccCccCHHHH
Confidence 3467755433 3567899999999999999985211 0111110 011111111 23344555554333333333
Q ss_pred ---cEEEecH-HH-HHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEecCHHH
Q 019548 194 ---KRVLSHP-QA-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARA 246 (339)
Q Consensus 194 ---~~VySHp-qa-l~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIas~~A 246 (339)
.-|...+ .. ..+...++.+.+.. ...++|......+++.+ ...|+.+..+
T Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G---~Gia~lp~~~ 168 (228)
T 2fyi_A 111 AKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALG---LGIGLVAEQS 168 (228)
T ss_dssp TTSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT---SCEEEEEGGG
T ss_pred cCCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhC---CCEEEeehHh
Confidence 3443222 21 23455666665432 34567777777777765 3456666543
No 138
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=32.35 E-value=1.1e+02 Score=27.16 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=70.7
Q ss_pred Ccccc-CCCHHHHHHHHHhCCCCeEEEeeec---cCccc-------hhhhHHH----hh-cCCeEEEEEEEEeeeeeecc
Q 019548 121 CETVP-CDEFEDTFKAVELWLADKAVLPIEN---SSSGS-------IHRNYDL----LL-RHRLHIVGEVQLAANFCLLA 184 (339)
Q Consensus 121 ~~~~~-~~si~~Vf~aV~~g~ad~gVVPiEN---S~~G~-------V~~tlDl----L~-~~~l~I~gEi~l~I~h~Ll~ 184 (339)
+++.+ +.+-..+++++.+|++|+++-=.-+ +..+. -.+.++. +. +.++.+.+-....-.+.|+.
T Consensus 36 Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V 115 (275)
T 1sw5_A 36 AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAV 115 (275)
T ss_dssp EEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEE
T ss_pred EEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEE
Confidence 56777 6778899999999999988520000 00110 1112333 22 24788888775555567776
Q ss_pred CC------C-CCcCCccE------EEecHHHHH---HHHHHHHhcCCe--eEecCCHHHHHHHHHhcCCCCeEEe-cCHH
Q 019548 185 LP------G-IKADQLKR------VLSHPQALA---SSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAV-ASAR 245 (339)
Q Consensus 185 ~~------g-~~l~~I~~------VySHpqal~---QC~~~L~~~~~~--~i~~~STA~AA~~v~~~~~~~~AAI-as~~ 245 (339)
++ + .+++|++. +-+-+.-.. .-..+++.++.. .+..-+.+.+...+..+ ..+.+.+ .+..
T Consensus 116 ~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~~ 194 (275)
T 1sw5_A 116 RADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTDS 194 (275)
T ss_dssp EHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTCH
T ss_pred eHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCCc
Confidence 53 2 23444432 222222110 112266665543 22223444444444443 4555555 3333
Q ss_pred HHHHcCCceeecc
Q 019548 246 AAEIYGLNILADR 258 (339)
Q Consensus 246 AA~~ygL~il~~~ 258 (339)
....|+|.+|.+.
T Consensus 195 ~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 195 RVDLFNLKILEDD 207 (275)
T ss_dssp HHHHTTEEECBCT
T ss_pred chhcCCeEEccCC
Confidence 3456899888754
No 139
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=31.41 E-value=98 Score=30.44 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=60.7
Q ss_pred CeeEecCCHHHHHHHHHhcCCCCeEEe--cCHHHHHHcCCceeeccccCCCCCeeeEEEEeeCCC--C---CCC--CCCc
Q 019548 215 VARENVDDTASAAQYVASNGLRDAGAV--ASARAAEIYGLNILADRIQDEPDNITRFLVLARDPI--I---PRT--DKLF 285 (339)
Q Consensus 215 ~~~i~~~STA~AA~~v~~~~~~~~AAI--as~~AA~~ygL~il~~~IeD~~~N~TRF~vi~~~~~--~---p~~--~~~~ 285 (339)
++.++.-|..++.+++..+ +-.+ -+-.-|..+|+++.-.|..+...--|.|. ..... . .++ ...+
T Consensus 224 a~~i~~is~~e~~ela~~G----a~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~--~~~~~~~~~~~v~gIa~~~~ 297 (446)
T 3tvi_A 224 PKTISKISYKELRELSYMG----ATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLIL--SDTHKEINLGTITGIAGKKN 297 (446)
T ss_dssp CCBCSEEEHHHHHHTTTC--------CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEE--CTTTSCCCTTCCCEEEEEEE
T ss_pred CeEcceeCHHHHHHHHhCC----CCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEe--cCCcccccCcceEEEEecCC
Confidence 3444444556666654321 1112 22234566899998888766444457653 11111 1 111 1112
Q ss_pred eEEEEEE---ecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEec
Q 019548 286 KTSIVFT---LDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDS 333 (339)
Q Consensus 286 Ktsi~~~---~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~ 333 (339)
-+.|-+. .++.||.+.++++.|+++|||.-.|.+- .....|.++.
T Consensus 298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~---~~~is~~V~~ 345 (446)
T 3tvi_A 298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG---VDSVSLVIED 345 (446)
T ss_dssp EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE---TTEEEEEEEH
T ss_pred EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC---CCEEEEEEec
Confidence 2333333 3579999999999999999999888653 2345555553
No 140
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=31.11 E-value=55 Score=28.88 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=33.3
Q ss_pred eEEEEECCCCcHHHHHHHHhC---CC----CccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 98 VRISFKGLPGSFSEDAALKAY---PK----CETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 98 ~~VayLGP~GTfS~~AA~~~f---g~----~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
.+|++ +.|+.++.....++ |- ++++ ..+..+++.++.+|++|.++++
T Consensus 106 k~i~~--~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 106 HKVAF--QKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp SEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEee--eCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCCCCEEEec
Confidence 58988 56888876554433 31 2223 3468999999999999998875
No 141
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=30.95 E-value=3e+02 Score=24.89 Aligned_cols=160 Identities=8% Similarity=-0.049 Sum_probs=83.9
Q ss_pred CceEEEEECCCC-cH-HHHHHH--HhCC-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhc-CCeE
Q 019548 96 TKVRISFKGLPG-SF-SEDAAL--KAYP-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR-HRLH 169 (339)
Q Consensus 96 ~~~~VayLGP~G-Tf-S~~AA~--~~fg-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~-~~l~ 169 (339)
.+++|++..-.. .. ++.++. +..| ++++++..+-..+++++.+|++|+.+--.-+. ....++...+ .++.
T Consensus 8 ~~I~ig~~~~~e~~~~~~i~~~~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~~l~ 83 (309)
T 1r9l_A 8 ITVNPVQSTITEETFQTLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDKKFY 83 (309)
T ss_dssp CEECEEECSCGGGHHHHHHHHHHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGGTEE
T ss_pred ceEEEeecCccHHHHHHHHHHHHHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCCcEE
Confidence 457888865222 21 122221 1223 35666555778899999999999986322222 1344444332 3566
Q ss_pred EEEEEEEeeeeeeccCC------C-CCcCCcc----------------EEEecHHHH---HHHHHHHHhcCCe--eEecC
Q 019548 170 IVGEVQLAANFCLLALP------G-IKADQLK----------------RVLSHPQAL---ASSDIVLTQLGVA--RENVD 221 (339)
Q Consensus 170 I~gEi~l~I~h~Ll~~~------g-~~l~~I~----------------~VySHpqal---~QC~~~L~~~~~~--~i~~~ 221 (339)
..+.....-...|+.++ + .+++|++ +++.-|... ..-..+|+.++.. ...+.
T Consensus 84 ~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~~~ 163 (309)
T 1r9l_A 84 REGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQ 163 (309)
T ss_dssp ECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred EecccCCCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEEcC
Confidence 66554444445555533 2 3467776 666655332 1224566666654 33443
Q ss_pred CHHH----HHHHHHhcCCCCeEEe-cCHHHHHHc----CCceeeccc
Q 019548 222 DTAS----AAQYVASNGLRDAGAV-ASARAAEIY----GLNILADRI 259 (339)
Q Consensus 222 STA~----AA~~v~~~~~~~~AAI-as~~AA~~y----gL~il~~~I 259 (339)
++.. ++..+.+.+....+.+ .+......| +|.+|...-
T Consensus 164 ~s~~~~~~~~~~A~~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~~ 210 (309)
T 1r9l_A 164 GNYAAMMADTISRYKEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPF 210 (309)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEEESSSHHHHSCBTTTEEECBCSS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeecCchHhhhccccCCceEeccCc
Confidence 3321 2222333344555555 455555677 898877653
No 142
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=30.83 E-value=2.6e+02 Score=24.07 Aligned_cols=122 Identities=16% Similarity=0.049 Sum_probs=59.9
Q ss_pred hCCCCccccC-CCHHHHHHHHHhCCCCeEEEe---eeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCCcCC
Q 019548 117 AYPKCETVPC-DEFEDTFKAVELWLADKAVLP---IENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQ 192 (339)
Q Consensus 117 ~fg~~~~~~~-~si~~Vf~aV~~g~ad~gVVP---iENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~ 192 (339)
.++++++... .+-+++.+.+.+|++|+|++. -.....+... ..|.+.++.+ ..+-.|-|. ....+++|
T Consensus 126 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l~~---~~l~~~~~~~----v~~~~~pl~-~~~i~~~d 197 (310)
T 2esn_A 126 SAPGVRLRLVNAERKLSVEALASGRIDFALGYDEEHERLPEGIQA---HDWFADRYVV----VARRDHPRL-AGAPTLEG 197 (310)
T ss_dssp HSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCSTTCCCCTTEEE---EEEEEECEEE----EEESSCTTC-SSSCCHHH
T ss_pred HCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCcccccCCcCcce---eeeeccceEE----EEeCCCCCc-CCCCCHHH
Confidence 3576544322 223567788999999999986 2211111110 0111111111 122233332 12233333
Q ss_pred c---cEEEecHH-H-HHHHHHHHHhcCCe---eEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 193 L---KRVLSHPQ-A-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 193 I---~~VySHpq-a-l~QC~~~L~~~~~~---~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+ ..|.-.+. . ......|+...+.. ...++|...+..++..+ ...|+.+...++.
T Consensus 198 L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 198 YLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp HHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred HhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 3 33433321 1 23456777776542 34567777777777664 4577777776654
No 143
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=30.59 E-value=1.9e+02 Score=23.74 Aligned_cols=114 Identities=7% Similarity=-0.020 Sum_probs=60.6
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHh-hcCCeEEEEEEEEeeeeeeccCC-CC---CcCCcc-
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALP-GI---KADQLK- 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL-~~~~l~I~gEi~l~I~h~Ll~~~-g~---~l~~I~- 194 (339)
.++++. ++.+++.++.+|++|.++-++--+. +--+.+ ...++ ......+++++ +. +++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~-----~r~~~~~~s~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 115 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYTK-----ERAEKYLYAAPI-------AQNPNVLVVKKDDSSIKSLDDIGG 115 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCCH-----HHHHHEEECCCC-------EECCEEEEEETTCCSCSSGGGCTT
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccCh-----hhhhceeeccce-------ecCceEEEEECCCCCCCCHHHhCC
Confidence 467777 8999999999999998763322111 111111 11121 22234444444 22 234432
Q ss_pred -EEEecHH--HHHHHHHHHHhcC---CeeEec-CCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 -RVLSHPQ--ALASSDIVLTQLG---VARENV-DDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 -~VySHpq--al~QC~~~L~~~~---~~~i~~-~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|....- ....-.+++..++ +..+.. .|..++.+++..+ .-.|+|+....+..
T Consensus 116 ~~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~ 175 (246)
T 4eq9_A 116 KSTEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVET 175 (246)
T ss_dssp CEEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHHH
Confidence 4433221 1233344444543 344434 4888888888876 35678877766553
No 144
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=30.26 E-value=1.1e+02 Score=22.99 Aligned_cols=110 Identities=8% Similarity=0.006 Sum_probs=61.4
Q ss_pred EEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCeeeEEEEeeC
Q 019548 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARD 275 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~TRF~vi~~~ 275 (339)
|=.++......+.+|...+.+...+.|..+|.+.+.+.. ....|.........|+.++..=-++.....+.+++++..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 13 VDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 334667778888889888888777888888888777642 345554333223334444332222223456888888766
Q ss_pred CCCCCCCCC--ceEEEEEEecCCcchHHHHHHHH
Q 019548 276 PIIPRTDKL--FKTSIVFTLDEGPGVLFKALAVF 307 (339)
Q Consensus 276 ~~~p~~~~~--~Ktsi~~~~~~~pGaL~~iL~~F 307 (339)
......... .-..-++.-|-.+..|...|..+
T Consensus 91 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 91 NAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 432111101 11223333355566676666554
No 145
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=29.77 E-value=48 Score=33.35 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.9
Q ss_pred EEEEecCCcchHHHHHHHHHhCCceeeeeeeeeCCC
Q 019548 289 IVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324 (339)
Q Consensus 289 i~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~ 324 (339)
+.|..|.+||+|.+.|+.+.. +-|+|-++=|-...
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~ 470 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGT 470 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCC
Confidence 668889999999999999985 56777777664433
No 146
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.47 E-value=56 Score=24.44 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=46.8
Q ss_pred EEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEEee
Q 019548 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLAR 274 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi~~ 274 (339)
|=.++......+.+|.+.+.....+.|..+|.+.+.+.. ++ ..|.........|+.++.. |... +...+.+++++.
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE-PA-IMTLDLSMPKLDGLDVIRS-LRQNKVANQPKILVVSG 88 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC-CS-EEEEESCBTTBCHHHHHHH-HHTTTCSSCCEEEEECC
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHHHH-HHhcCccCCCeEEEEeC
Confidence 335677778888899888888888888888888877652 43 4444333333444444432 3322 234566666654
Q ss_pred C
Q 019548 275 D 275 (339)
Q Consensus 275 ~ 275 (339)
.
T Consensus 89 ~ 89 (132)
T 3lte_A 89 L 89 (132)
T ss_dssp S
T ss_pred C
Confidence 3
No 147
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=29.33 E-value=96 Score=27.11 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=64.1
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc--E
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 195 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~ 195 (339)
+++++.+ ..+++.++.+|++|+++.++.- +.+.. ..+... .-+......++++++. +++|++ +
T Consensus 99 v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r~--~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk~ 166 (291)
T 2yjp_A 99 VEFVLTE-AANRVEYVRSGKVDLILANFTQ--------TPERA--EAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQT 166 (291)
T ss_dssp EEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHHH--TTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTSE
T ss_pred EEEEEcc-HHHHHHHHhCCCeeEEEeCCCC--------ChHHH--ccceec-cCeeecceEEEEeCCCCCCCHHHhCCCE
Confidence 5667766 6899999999999988743321 11111 111111 1122334456665542 233432 4
Q ss_pred EEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 196 VLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
|..- ..-.. ..||... +...+.+.+..++.+.+..+ .-.|++.....+..
T Consensus 167 v~~~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 167 LLVN-KGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLWA 218 (291)
T ss_dssp EEEE-TTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEe-cCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 5442 22222 3455553 56778888999999988876 34577777665543
No 148
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=29.03 E-value=1.6e+02 Score=25.94 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=67.1
Q ss_pred CHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCe-EEEEEEEEeeeee---eccCCCCC-cCC--ccEEEecH
Q 019548 128 EFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRL-HIVGEVQLAANFC---LLALPGIK-ADQ--LKRVLSHP 200 (339)
Q Consensus 128 si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l-~I~gEi~l~I~h~---Ll~~~g~~-l~~--I~~VySHp 200 (339)
...|+-..|+.|.+|+||+= .|.|.++.. .+.--..|...+| +++.++.. .++ =++|.+..
T Consensus 50 R~~DIp~yV~~G~~DlGItG------------~D~l~E~~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~~~RIATky 117 (208)
T 1z7m_E 50 KPNDVITFLEHGIVDIGFVG------------KDTLDENDFDDYYELLYLKIGQCIFALASYPDFSNKNFQRHKRIASKY 117 (208)
T ss_dssp CHHHHHHHHHTTSCSEEEEE------------HHHHHHSSCCCEEEEEEETTCCCEEEEEECGGGGGCCCSSCEEEEESC
T ss_pred CchhHHHHHhCCCccEEEee------------eeeeeecCCCCeEEeeccccCCEEEEEEEECCCccchhcCCCEEEECc
Confidence 35799999999999999973 577777643 3444556665565 33333211 222 24666665
Q ss_pred HHHHHHHHHHHhcCC--eeEecCCHHHHHHHHHhcCCCC-eEEe-cCHHHHHHcCCceee
Q 019548 201 QALASSDIVLTQLGV--ARENVDDTASAAQYVASNGLRD-AGAV-ASARAAEIYGLNILA 256 (339)
Q Consensus 201 qal~QC~~~L~~~~~--~~i~~~STA~AA~~v~~~~~~~-~AAI-as~~AA~~ygL~il~ 256 (339)
--+. ++|++++++ +++..+-..|+|=.+ +..+ .+=| .+-..-+.+||+++.
T Consensus 118 p~l~--~~yf~~~gi~~~ii~l~GsvE~ap~~---GlAD~IvDivsTG~TLr~NgL~~ie 172 (208)
T 1z7m_E 118 PRVT--KKYFAQKQEDIEIIKLEGSVELGPVV---GLADAIVDIVETGNTLSANGLEVIE 172 (208)
T ss_dssp HHHH--HHHHHHTTCCEEEEECSSCTTHHHHT---TSCSEEEEEESSSHHHHTTTCEEEE
T ss_pred hHHH--HHHHHHcCCceEEEECCCceeeccCC---CcccEEEEEeCChHHHHHCCCEEeE
Confidence 5443 789998865 455555444444322 1111 1112 455667889999885
No 149
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.74 E-value=87 Score=23.30 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=47.7
Q ss_pred EEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCeeeEEEEeeC
Q 019548 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARD 275 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~TRF~vi~~~ 275 (339)
|=.++......+.+|.+.+.....+.|..+|.+.+.+. .+ ...|.........|+.++.. |... ...+.+++++..
T Consensus 13 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~-dlvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~t~~ 88 (130)
T 3eod_A 13 VEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TP-DLMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVISAT 88 (130)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC-CC-SEEEECCC-----CHHHHHH-HHHT-TCCCCEEEEECC
T ss_pred EeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC-CC-CEEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEEEcC
Confidence 34567777888889988888877788888888877654 23 45555554455667666653 3222 235778888765
Q ss_pred C
Q 019548 276 P 276 (339)
Q Consensus 276 ~ 276 (339)
.
T Consensus 89 ~ 89 (130)
T 3eod_A 89 E 89 (130)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=28.41 E-value=75 Score=27.60 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=35.6
Q ss_pred CceEEEEECCCCcHHHHHHHHhCCCCccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 96 TKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~fg~~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
+..+||+-+ .|+-++...+.+....+++.. .+.++..++.+|++|.++++
T Consensus 95 kGk~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 95 EGLRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp TTCEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred CCCEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 346899875 355556656656655555554 44689999999999999986
No 151
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=27.44 E-value=2.6e+02 Score=25.20 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=67.2
Q ss_pred CceEEEEEC-CCCcHHHHHHHHh---CC-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cCC
Q 019548 96 TKVRISFKG-LPGSFSEDAALKA---YP-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHR 167 (339)
Q Consensus 96 ~~~~VayLG-P~GTfS~~AA~~~---fg-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~~ 167 (339)
...+||+.+ |....-+.+...+ .| +++++.+.+..+.-.|+.+|++|....-.. +.++.+. .++
T Consensus 3 ~~ikVG~~~~p~~~i~~~~~~~l~~~~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyl~~~~k~~g~~ 74 (240)
T 3tqw_A 3 AMVRVGTIAGPETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHL--------PYLKAQIEMRGYK 74 (240)
T ss_dssp -CEEEEEETTHHHHHHHHHHHHHHHHHCCCEEEEEESCTTSHHHHHHTTSCSEEEEEEH--------HHHHHHHHHHCCC
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHhcCCeEEEEEeCChHhHHHHHHcCCcCeeccCCH--------HHHHHHHHHCCCC
Confidence 357999984 4332222222211 13 468899999999999999999998876332 3455443 356
Q ss_pred eEEEEEEEEeeeeeeccCCCCCcCCcc---EEEe--cHHHHHHHHHHHHhcC
Q 019548 168 LHIVGEVQLAANFCLLALPGIKADQLK---RVLS--HPQALASSDIVLTQLG 214 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VyS--Hpqal~QC~~~L~~~~ 214 (339)
|..+|.+.+.- ..|.+.+-.+++|++ +|.- -|--.+..-.+|.+.|
T Consensus 75 lv~v~~~~~~p-~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~aG 125 (240)
T 3tqw_A 75 IVSIGKTFVYP-MGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQ 125 (240)
T ss_dssp EEEEEEEEECC-CEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEEeeccccc-eEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHCC
Confidence 77777765543 456676656788887 4442 3333344445666655
No 152
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=27.15 E-value=79 Score=24.13 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=62.9
Q ss_pred EEecHHHHHHHHHHHHhcCCe--eEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCCCCCeeeEEEEe
Q 019548 196 VLSHPQALASSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLA 273 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~~~~--~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~TRF~vi~ 273 (339)
|=.++......+.+|...+.. ...+.|..+|.+.+.+. .+ ...|.........|+.++..=-+......+.+++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~-dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KY-DLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CC-SEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CC-CEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 335677778889999887665 66778888888877654 23 455555444455566655532222244568888887
Q ss_pred eCCCCCC-----CCCCceEEEEEEecC-CcchHHHHHHHHHh
Q 019548 274 RDPIIPR-----TDKLFKTSIVFTLDE-GPGVLFKALAVFAL 309 (339)
Q Consensus 274 ~~~~~p~-----~~~~~Ktsi~~~~~~-~pGaL~~iL~~Fa~ 309 (339)
....... ..+ ..-++.-|- .+..|...|...-+
T Consensus 89 ~~~~~~~~~~~~~~g---a~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 89 DNVSDDRAKQCMAAG---ASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTCCHHHHHHHHHTT---CSEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC---CCEEEECCCCcHHHHHHHHHHHHH
Confidence 6532100 001 111333344 66777766655433
No 153
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=26.96 E-value=50 Score=33.78 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.9
Q ss_pred ceEEEEE-EecCCcchHHHHHHHHHhCCceeeeeeeee
Q 019548 285 FKTSIVF-TLDEGPGVLFKALAVFALREINLTKIESRP 321 (339)
Q Consensus 285 ~Ktsi~~-~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP 321 (339)
+-+.|.+ .++++||...++++.|+++|||.-.|..-+
T Consensus 443 ~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~ 480 (600)
T 3l76_A 443 DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQ 480 (600)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecc
Confidence 4455544 579999999999999999999998885443
No 154
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.49 E-value=50 Score=24.62 Aligned_cols=107 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred ecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEEeeCC
Q 019548 198 SHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLARDP 276 (339)
Q Consensus 198 SHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi~~~~ 276 (339)
.++......+.+|.+.+.....+.|..+|.+.+.+.. ++ ..|.........|+.++.. |... ....+.+++++...
T Consensus 11 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 11 DYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YD-AVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp SCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-CS-EEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEECC-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-CC-EEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEECCc
Confidence 4667778888899888887778888888888887653 43 4444333233444444432 3222 35567888887654
Q ss_pred CCCCCCCCce--EEEEEEecCCcchHHHHHHHHH
Q 019548 277 IIPRTDKLFK--TSIVFTLDEGPGVLFKALAVFA 308 (339)
Q Consensus 277 ~~p~~~~~~K--tsi~~~~~~~pGaL~~iL~~Fa 308 (339)
.... ...-+ ..-++.-|-.+..|.+.++...
T Consensus 88 ~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 88 KNDL-GKEACELFDFYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC
T ss_pred chhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhh
Confidence 3211 10000 1113333455666666665443
No 155
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=25.29 E-value=1.9e+02 Score=26.22 Aligned_cols=109 Identities=11% Similarity=0.134 Sum_probs=66.1
Q ss_pred CceEEEEEC-CCCcHHHHHHHHhCC----CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cCC
Q 019548 96 TKVRISFKG-LPGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHR 167 (339)
Q Consensus 96 ~~~~VayLG-P~GTfS~~AA~~~fg----~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~~ 167 (339)
...+||+.. |... -...+...|. +++++.+.+..+.-.|+.+|++|....=.. +.++.+. ..+
T Consensus 11 ~~ikVG~~~~p~~~-il~~v~~~~~k~Gi~veiv~F~Dy~~pN~AL~~G~iDaN~fQh~--------pyL~~~~k~~g~~ 81 (252)
T 4ib2_A 11 KTIKVAASATPHAE-ILEQAKSILKKEGYQLEVTVFDDYVQPNEVVESGEFDANYFQHV--------PYLESFNEEKGTH 81 (252)
T ss_dssp HEEEEEECTTTHHH-HHHHHHHHHHHTTCEEEEEECSSSSHHHHHHHTTSSSEEEEEEH--------HHHHHHHHHHCCC
T ss_pred ceEEEEEcCCChHH-HHHHHHHHHHhcCCeEEEEEecChhhHHHHHHcCCcCeeecCCH--------HHHHHHHHHCCCC
Confidence 357899973 4222 1233444442 368899999999999999999998664322 3345443 356
Q ss_pred eEEEEEEEEeeeeeeccCCCCCcCCcc---EEEecHHHHHHHH--HHHHhcC
Q 019548 168 LHIVGEVQLAANFCLLALPGIKADQLK---RVLSHPQALASSD--IVLTQLG 214 (339)
Q Consensus 168 l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VySHpqal~QC~--~~L~~~~ 214 (339)
|..+|.+.+.- ..|.+.+-.+++|++ +|.----+-.|-| .+|.+.|
T Consensus 82 lv~v~~~~~~p-~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~~aG 132 (252)
T 4ib2_A 82 LVDAGDIHYEP-FGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDNG 132 (252)
T ss_dssp EEEEEEEEECC-CEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEEeeccccc-eEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHHHHHCC
Confidence 77777654433 456666656788887 5544323334433 3445444
No 156
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=24.66 E-value=72 Score=28.28 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=37.7
Q ss_pred eEEEEECC----CCcHHHHHHHHhCCC-----CccccCCCHHHHHHHHHhCCCCeEEEee
Q 019548 98 VRISFKGL----PGSFSEDAALKAYPK-----CETVPCDEFEDTFKAVELWLADKAVLPI 148 (339)
Q Consensus 98 ~~VayLGP----~GTfS~~AA~~~fg~-----~~~~~~~si~~Vf~aV~~g~ad~gVVPi 148 (339)
.+|++--| .|.|+.++..+ .|- ..++..++..+++..|++|++|+|++..
T Consensus 133 ~~iai~dP~~~p~G~~a~~~l~~-~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~ 191 (253)
T 3gzg_A 133 GRLAVGQTASVPAGSYAAAALRK-LGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYG 191 (253)
T ss_dssp CCEEEECTTTSHHHHHHHHHHHH-TTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CEEEEeCCCCCchHHHHHHHHHH-cCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEh
Confidence 68999776 56676665443 331 2456788999999999999999999853
No 157
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=24.62 E-value=79 Score=25.79 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=33.5
Q ss_pred EEEEECCCCcHHHHHHHHhC---CC-------CccccCCCHHHHHHHHHhCCCCeEEEee
Q 019548 99 RISFKGLPGSFSEDAALKAY---PK-------CETVPCDEFEDTFKAVELWLADKAVLPI 148 (339)
Q Consensus 99 ~VayLGP~GTfS~~AA~~~f---g~-------~~~~~~~si~~Vf~aV~~g~ad~gVVPi 148 (339)
+|+...|.++-+..++...| +- ...+...+.+++.+.|.+|+++.|++|.
T Consensus 106 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~ 165 (231)
T 1atg_A 106 HIAISNPQIAPYGLAGTQVLTHLGLLDKLTAQERIVEANSVGQAHSQTASGAADLGFVAL 165 (231)
T ss_dssp CEEEECTTTCHHHHHHHHHHHHTTCHHHHHHTTCEEEESSHHHHHHHHHTTSSSEEEEEG
T ss_pred EEEecCCCCCchhHHHHHHHHHCCCcccccccceEEecCCHHHHHHHHHcCCCCEEEEEH
Confidence 78888777443333222222 21 1234567899999999999999999985
No 158
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=24.42 E-value=49 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=31.5
Q ss_pred eEEEEECCCCcHHHHHHHHhCCCC--ccccC--CCHHHHHHHHHhCCCCeEEEe
Q 019548 98 VRISFKGLPGSFSEDAALKAYPKC--ETVPC--DEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 98 ~~VayLGP~GTfS~~AA~~~fg~~--~~~~~--~si~~Vf~aV~~g~ad~gVVP 147 (339)
.+|++. ..|++.+ ...+.|+.. .++.+ ++.++++++|.+|++|+.+..
T Consensus 162 ~~vg~v-~~~s~~~-~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 162 FRFGTV-PNGSTER-NIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp CCEECC-TTSHHHH-HHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred ceEEEE-eCCchHH-HHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 466643 2355533 334445432 34555 899999999999999988874
No 159
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=23.96 E-value=43 Score=31.33 Aligned_cols=121 Identities=9% Similarity=-0.054 Sum_probs=70.5
Q ss_pred CceEEEEECCCC-cHHHHHHHHh-------C-CCCccccCC-----CHHHHHHHHHhCCCCeEEEeeeccC--------c
Q 019548 96 TKVRISFKGLPG-SFSEDAALKA-------Y-PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSS--------S 153 (339)
Q Consensus 96 ~~~~VayLGP~G-TfS~~AA~~~-------f-g~~~~~~~~-----si~~Vf~aV~~g~ad~gVVPiENS~--------~ 153 (339)
..+++++..|+| +..+.++..+ - |.+++..++ +..+++++|..|.+|++++..-... -
T Consensus 32 ~~l~~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~ 111 (365)
T 2hzl_A 32 VTWRLASSFPKSLDTIFGGAEVLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALA 111 (365)
T ss_dssp CEEEEEESSCTTCTTTTHHHHHHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHT
T ss_pred eEEEEeccCCCCCCchhHHHHHHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhh
Confidence 458999999988 5444554432 2 335554444 4589999999999999998642211 0
Q ss_pred cchh------------------hhHH-HhhcCCeEEEEEEEEeeeeeeccCCC-CCcCCcc--EEEecHHHHHHHHHHHH
Q 019548 154 GSIH------------------RNYD-LLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLT 211 (339)
Q Consensus 154 G~V~------------------~tlD-lL~~~~l~I~gEi~l~I~h~Ll~~~g-~~l~~I~--~VySHpqal~QC~~~L~ 211 (339)
+... +.++ ++.+.++++.+-.....++....+++ .+++|++ +|-.-+ --..+++
T Consensus 112 ~~lPf~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~~pI~s~~DLkG~KiR~~~----~~~~~~~ 187 (365)
T 2hzl_A 112 AAVPFSLSARGINAWHYHGGGIDLYNEFLSQHNIVAFPGGNTGVQMGGWFRREINTVADMQGLKMRVGG----FAGKVME 187 (365)
T ss_dssp TCCTTCCCHHHHHHHHHHSSHHHHHHHHHGGGTEEEEEEEECCSBCCCEESSCCCSTGGGTTCEEECCT----THHHHHH
T ss_pred hcCCCCCCHHHHHHHHHcCChHHHHHHHHHHCCCEEEeccCCCcccceeecCCCCChHHhCCCEEecCC----cHHHHHH
Confidence 1000 0111 12345788777655554443323322 3566776 565543 2356888
Q ss_pred hcCCeeEec
Q 019548 212 QLGVARENV 220 (339)
Q Consensus 212 ~~~~~~i~~ 220 (339)
..|+..++.
T Consensus 188 ~lGa~pv~~ 196 (365)
T 2hzl_A 188 RLGVVPQQI 196 (365)
T ss_dssp TTTCEEECC
T ss_pred HcCCcceec
Confidence 888876655
No 160
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=23.94 E-value=62 Score=28.38 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=34.8
Q ss_pred eEEEE-EEecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 286 KTSIV-FTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 286 Ktsi~-~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
|.|++ ....+.||...++.+.|++.|||+..|- +....-.++|+..
T Consensus 117 kVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs---tSEi~IS~vV~~~ 163 (200)
T 4go7_X 117 KVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS---TSEIRISVLCRDT 163 (200)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE---ECSSEEEEEEEGG
T ss_pred eeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE---ccCCEEEEEEeHH
Confidence 55555 3457899999999999999999999995 3444555666644
No 161
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.77 E-value=49 Score=25.18 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=61.2
Q ss_pred EEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEEee
Q 019548 196 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLAR 274 (339)
Q Consensus 196 VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi~~ 274 (339)
|=.++......+.+|.+.+.....+.|..+|.+.+.+.. ++ ..|.........|+.++.. |... ....+.+++++.
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~d-lvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-YA-AMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-CS-EEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEECT
T ss_pred EcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-CC-EEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEec
Confidence 334677778888999888888778888888888877653 33 4554433333445544432 3322 345688888875
Q ss_pred CCCCC----CCCCCceEEEEEEecCCcchHHHHHHHHH
Q 019548 275 DPIIP----RTDKLFKTSIVFTLDEGPGVLFKALAVFA 308 (339)
Q Consensus 275 ~~~~p----~~~~~~Ktsi~~~~~~~pGaL~~iL~~Fa 308 (339)
..... ... ..-..=++.-|-.+..|...|...-
T Consensus 89 ~~~~~~~~~~~~-~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 89 NAREGELEFNSQ-PLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp THHHHHHHHCCT-TTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHhh-hcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 42100 000 0011122333456667777666543
No 162
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=23.72 E-value=3.5e+02 Score=23.23 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=63.2
Q ss_pred hCCCCccccC-CCHHHHHHHHHhCCCCeEEEeeecc--CccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCCCcCCc
Q 019548 117 AYPKCETVPC-DEFEDTFKAVELWLADKAVLPIENS--SSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL 193 (339)
Q Consensus 117 ~fg~~~~~~~-~si~~Vf~aV~~g~ad~gVVPiENS--~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I 193 (339)
.++++++... .+-+++.+.+.+|++|+|+...... ..+... ..|.+.++.++ .+-.|-|... .+++|+
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v----~~~~hpla~~--~~~~dL 187 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIV----GQRQHPMANA--TRLAEL 187 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEE----EETTCTTTTC--CSGGGG
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEE----EcCCCCCCCC--CCHHHH
Confidence 4677654332 3456788899999999999864321 111111 11112222222 2333433321 123333
Q ss_pred ---cEEEe-cHHH-HHHHHHHHHhcCC-e---eEecCCHHHHHHHHHhcCCCCeEEecCHHHHH
Q 019548 194 ---KRVLS-HPQA-LASSDIVLTQLGV-A---RENVDDTASAAQYVASNGLRDAGAVASARAAE 248 (339)
Q Consensus 194 ---~~VyS-Hpqa-l~QC~~~L~~~~~-~---~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~ 248 (339)
..|.. .... -....+|+.+.+. . ...++|...+..+++.+ ...|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 188 QECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp TTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred hCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 34433 2222 2456778877665 2 24566766677777764 457777887765
No 163
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=23.65 E-value=63 Score=27.97 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=37.1
Q ss_pred ceEEEEECC----CCcHHHHHHHHhCCC-----CccccCCCHHHHHHHHHhCCCCeEEEe
Q 019548 97 KVRISFKGL----PGSFSEDAALKAYPK-----CETVPCDEFEDTFKAVELWLADKAVLP 147 (339)
Q Consensus 97 ~~~VayLGP----~GTfS~~AA~~~fg~-----~~~~~~~si~~Vf~aV~~g~ad~gVVP 147 (339)
+.+|++--| .|.|+.++..+ .|- ..++...+..+++..|++|++|+|++.
T Consensus 116 ~~~iai~~p~~~p~G~~a~~~l~~-~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~ 174 (237)
T 3r26_A 116 GGRLAVGDPEHVPAGIYAKEALQK-LGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVY 174 (237)
T ss_dssp TCCEEEECTTTCHHHHHHHHHHHH-TTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CCeEEEeCCCCCChHHHHHHHHHH-cCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEE
Confidence 368999877 46666655433 331 245677899999999999999999985
No 164
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.62 E-value=66 Score=24.06 Aligned_cols=75 Identities=13% Similarity=0.099 Sum_probs=46.3
Q ss_pred ecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEEeeC
Q 019548 198 SHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLARD 275 (339)
Q Consensus 198 SHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi~~~ 275 (339)
.+|......+.+|...+.+...+.|..+|.+.+.+. .++ ..|..-......|+.++.. +... ....+.+++++..
T Consensus 10 d~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~d-lvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 10 DSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TPD-LIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CCS-EEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEESC
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CCC-EEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEecC
Confidence 467777788889988888888888888888877654 233 4444333333445554432 3222 2345677777654
No 165
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=23.42 E-value=1.6e+02 Score=26.20 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=79.6
Q ss_pred CceEEEEECCCCcHHHHHHHHh------CC----C-Ccc----------ccCCCHHHHHHHHHhCCCCeEEEeeeccCcc
Q 019548 96 TKVRISFKGLPGSFSEDAALKA------YP----K-CET----------VPCDEFEDTFKAVELWLADKAVLPIENSSSG 154 (339)
Q Consensus 96 ~~~~VayLGP~GTfS~~AA~~~------fg----~-~~~----------~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G 154 (339)
+.++||.. +|.-.+.+..-+ +. + -++ +.+-...|+-..|+.|.+|+||+
T Consensus 4 ~mL~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~~v~~~~~R~~DIp~yV~~G~~DlGIt-------- 73 (214)
T 2vd2_A 4 KLLTMAMP--KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIA-------- 73 (214)
T ss_dssp CCEEEEEE--CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGGGTEEEEEECTTHHHHHHHHTSSSEEEC--------
T ss_pred ccEEEEEc--ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCCCCEEEEEECchhHHHHHhCCCccEEEe--------
Confidence 45788985 999988775432 00 1 011 12223479999999999999995
Q ss_pred chhhhHHHhhcCCeEEEEEEEEeeeee---eccCCCCCcCC-ccEEEecHHHHHHHHHHHHhcC--CeeEecCCHHHHHH
Q 019548 155 SIHRNYDLLLRHRLHIVGEVQLAANFC---LLALPGIKADQ-LKRVLSHPQALASSDIVLTQLG--VARENVDDTASAAQ 228 (339)
Q Consensus 155 ~V~~tlDlL~~~~l~I~gEi~l~I~h~---Ll~~~g~~l~~-I~~VySHpqal~QC~~~L~~~~--~~~i~~~STA~AA~ 228 (339)
=.|.|.+++..+.--..|...+| +++.++.++++ =++|.+..--+. ++|+++++ ++++..+-..|+|=
T Consensus 74 ----G~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~RIATkyp~l~--~~yf~~~gi~~~ii~l~GsvE~aP 147 (214)
T 2vd2_A 74 ----GKDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNVA--SSYFREQGEQVEIIKLNGSIELAP 147 (214)
T ss_dssp ----CTHHHHSCSCSSEEEEECTTSCCEEEEEECTTCCCCSSSCEEEESCHHHH--HHHHHHHCCCCEEEECCSCTTHHH
T ss_pred ----eeeeeeecCCCeEEeeccccCCEEEEEEEECCCChhhCCcEEEECcHHHH--HHHHHHcCCcEEEEECCCceeecc
Confidence 24777777433333445655555 44444322221 346666655443 78998875 45666555444443
Q ss_pred HHHhcCCCC-eEEe-cCHHHHHHcCCceee
Q 019548 229 YVASNGLRD-AGAV-ASARAAEIYGLNILA 256 (339)
Q Consensus 229 ~v~~~~~~~-~AAI-as~~AA~~ygL~il~ 256 (339)
.+- ..+ .+=| .+-..-+.+||+++.
T Consensus 148 ~~G---lADaIvDivsTG~TLraNgL~~ie 174 (214)
T 2vd2_A 148 LIG---LADRIVDIVSTGQTLKENGLVETE 174 (214)
T ss_dssp HTT---SCSEEEEEECCSSSSCTTSCEEEE
T ss_pred CCC---CceEEEEEeCCHHHHHHCCCEEeE
Confidence 221 111 1112 333445677888774
No 166
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=23.21 E-value=66 Score=32.36 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=30.2
Q ss_pred eEEEEEEecCCcchHHHHHHHHHhCCceeeeeeeeeC
Q 019548 286 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 322 (339)
Q Consensus 286 Ktsi~~~~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~ 322 (339)
+..+.+.+|++||+|.++++.+. +-|++.++=|-.
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~ 372 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA 372 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc
Confidence 56777889999999999999888 789999998843
No 167
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=23.03 E-value=3e+02 Score=23.58 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc--
Q 019548 120 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 194 (339)
Q Consensus 120 ~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~-- 194 (339)
+.++++.+ ..++++++.+|++|+++-++.- +-+. ...+... .-+......++++++. +++|++
T Consensus 87 ~~~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLVE-AANRVEFLKSNKVDIILANFTQ--------TPQR--AEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEcC-HHHHHHHHhCCCeeEEeecCCC--------Ccch--hcceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 35667665 6889999999999987533211 1110 0111111 1122233445554432 344442
Q ss_pred EEEecHHHHHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ~VySHpqal~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|..-.-. . ...++.+. +...+.+.|..++.+.+..+ .-.|++.....+..
T Consensus 155 ~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNKGT-T-ADAYFTQNYPNIKTLKYDQNTETFAALMDK--RGDALSHDNTLLFA 207 (292)
T ss_dssp EEEEETTS-H-HHHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEEeCCC-c-HHHHHHHhCCCceEEEcCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 45443221 1 13455553 56778889999999988876 34577777665543
No 168
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.93 E-value=58 Score=23.31 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=44.7
Q ss_pred ecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEEeeCC
Q 019548 198 SHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLARDP 276 (339)
Q Consensus 198 SHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi~~~~ 276 (339)
.++....+...+|...+.....+.+..+|.+.+.+.. ++ ..|.........|+.++.. +... ....+.+++++...
T Consensus 9 ~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~-~d-lii~d~~~~~~~~~~~~~~-l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 9 EEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ-PI-VILMAWPPPDQSCLLLLQH-LREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC-CS-EEEEECSTTCCTHHHHHHH-HHHTCCCSSCCCEEEESSC
T ss_pred CCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC-CC-EEEEecCCCCCCHHHHHHH-HHhccccCCCCEEEEeCCC
Confidence 4667777888888888888877888888888777652 33 4443322222233333332 3222 22457777776553
No 169
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=22.89 E-value=91 Score=28.88 Aligned_cols=111 Identities=14% Similarity=0.057 Sum_probs=66.8
Q ss_pred CCceEEEEEC-CCCcHHHHHHHHhC---C-CCccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh---cC
Q 019548 95 GTKVRISFKG-LPGSFSEDAALKAY---P-KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RH 166 (339)
Q Consensus 95 ~~~~~VayLG-P~GTfS~~AA~~~f---g-~~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~---~~ 166 (339)
...++|++.+ |....-+.++...+ | +++++.+.++.....++.+|++|....-.. +.++.+. .+
T Consensus 22 ~~tIkVG~~~~p~~~il~~~~k~~l~k~Gi~veiv~F~Dy~~pN~AL~~G~IDaN~fQh~--------pyL~~~nk~~g~ 93 (275)
T 3gxa_A 22 KKEIVFGTTVGDFGDMVKEQIQPELEKKGYTVKLVEFTDYVRPNLALAEGELDINVFQHK--------PYLDDFKKEHNL 93 (275)
T ss_dssp -CEEEEEEETTHHHHHHHHTHHHHHHTTTCEEEEEEESSSSHHHHHHHHTSCSEEEEECH--------HHHHHHHHHHTC
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHcCCeEEEEEeCCcHhHHHHHHcCCCCeeecCCH--------HHHHHHHHHcCC
Confidence 4578999984 32222222233344 2 268899999999999999999999885322 4455443 25
Q ss_pred CeEEEEEEEEeeeeeeccCCCCCcCCcc---EEEecHHHH--HHHHHHHHhcC
Q 019548 167 RLHIVGEVQLAANFCLLALPGIKADQLK---RVLSHPQAL--ASSDIVLTQLG 214 (339)
Q Consensus 167 ~l~I~gEi~l~I~h~Ll~~~g~~l~~I~---~VySHpqal--~QC~~~L~~~~ 214 (339)
+|..+|.+.+.- ..|.+.+-.+++|++ +|.----+- +..-..|.+.|
T Consensus 94 ~Lv~v~~~~~~p-~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~aG 145 (275)
T 3gxa_A 94 DITEVFQVPTAP-LGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELG 145 (275)
T ss_dssp CEEEEEECCBCC-CEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred CEEEEeeccccc-eEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHCC
Confidence 677777654322 456666656788887 554333333 33344555543
No 170
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=22.52 E-value=3.6e+02 Score=22.91 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=63.2
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhhcCCeEEEEEEEEeeeeeeccCCCC---CcCCcc--E
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 195 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~~~~l~I~gEi~l~I~h~Ll~~~g~---~l~~I~--~ 195 (339)
+++++. ++.+++.++.+|++|+++-++- .|.+.- ..+... .-+......++++++. +++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r~--~~~~~s-~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTT--------NNVERQ--KQAAFS-DTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCB--------CCHHHH--TTCEEE-EEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEecccc--------CCcchh--hccccc-ceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 466777 4588999999999998753211 122211 122221 2234444556665543 234442 4
Q ss_pred EEecHHH--HHHHHHHHHhc--CCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 196 VLSHPQA--LASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 196 VySHpqa--l~QC~~~L~~~--~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
|..-.-. ......++... ++..+.+.|..++.+.+..+ .-.|++.+...+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESG--RAVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcC--CeeEEEeChHHHHH
Confidence 4332211 12223333332 56778889999999998876 34577777665543
No 171
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=22.26 E-value=44 Score=32.32 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=30.5
Q ss_pred ecCCcchHHHHHHHHHhCCceeeeeeeeeCCCCCceEEEecC
Q 019548 293 LDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSN 334 (339)
Q Consensus 293 ~~~~pGaL~~iL~~Fa~~gINLtkIeSRP~~~~~w~~~~~~~ 334 (339)
..++||.+.++++.|++.|||+..|-+ ....-.++|+..
T Consensus 354 m~~~~Gv~a~~f~aL~~~~InI~~is~---Se~~is~vV~~~ 392 (421)
T 3ab4_A 354 MKSHPGVTAEFMEALRDVNVNIELIST---SEIRISVLIRED 392 (421)
T ss_dssp GTSCTTHHHHHHHHHHHTTCCCCEEEE---ETTEEEEEEEGG
T ss_pred cccCccHHHHHHHHHHHCCCCEEEEEc---CCCeEEEEEeHH
Confidence 578999999999999999999998853 244555666544
No 172
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.55 E-value=81 Score=29.13 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=93.6
Q ss_pred CCceEEEEECCCCcHHHHHHHHhC--------CCCccccC---CCHHHHHHHHHhCCCCeEEEeee--------------
Q 019548 95 GTKVRISFKGLPGSFSEDAALKAY--------PKCETVPC---DEFEDTFKAVELWLADKAVLPIE-------------- 149 (339)
Q Consensus 95 ~~~~~VayLGP~GTfS~~AA~~~f--------g~~~~~~~---~si~~Vf~aV~~g~ad~gVVPiE-------------- 149 (339)
...+|++.-.|+|+..++++.++- |.+++.|- -+-.+++++|..|.+|.+++..-
T Consensus 14 a~~lr~a~~~~~~~~~~~~~~~fa~~Vee~s~G~i~v~p~g~Lg~~~e~~~~v~~G~id~~~~~~~~~~~~~p~~~v~~l 93 (326)
T 3fxb_A 14 RDTWRYAFEEAMTDVQGVYAQKFKEEIEANSDHEIQLFPYGTLGESADIMEQTQDGILQFVDQSPGFTGSLIPEAQVFFV 93 (326)
T ss_dssp -CCCEEECSSCTTSHHHHHHHHHHHHHHHSSSCCCEEECTTSSCSHHHHHHHHHHTSCSEEECCHHHHTTTSGGGGGGGS
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHhCCCeeEEEecchhhhhhCcchHHhcC
Confidence 356899999999999999887653 23453332 35689999999999999987421
Q ss_pred -----ccC-------ccc--hhhhH-HHhhcCCeEEEEEEEEeeeeeeccCCCCCcCCcc--EEEecHHHHHHHHHHHHh
Q 019548 150 -----NSS-------SGS--IHRNY-DLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK--RVLSHPQALASSDIVLTQ 212 (339)
Q Consensus 150 -----NS~-------~G~--V~~tl-DlL~~~~l~I~gEi~l~I~h~Ll~~~g~~l~~I~--~VySHpqal~QC~~~L~~ 212 (339)
+.. .|. +.+.+ +.+.+.++++.+-....-.|....+|=.+++|++ +|-.-+-+ --.++++.
T Consensus 94 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~~~~~G~~~~~~~kpI~s~~DlkGlKiR~~~~~--~~~~~~~a 171 (326)
T 3fxb_A 94 PYLLPTDQDHLARFFKESKAINDMFKPLYADQGLELLNMFPEGEVAMTTKTPVTTCSDLDEVKFRVMTNP--LLVESYKA 171 (326)
T ss_dssp TTCSCSCHHHHHHHHHHCHHHHTTSHHHHHTTTEEEEEEEEEEEEEEEESSCCSSGGGSTTCEEEECSCH--HHHHHHHH
T ss_pred CeecCCHHHHHHHHHcCcHHHHHHHHHHHHHcCeEEEEEecCCceEEecCCCCCChHHhCCCEEEecCCH--HHHHHHHH
Confidence 110 111 12222 2334568888887777766533333433566666 45544321 12456777
Q ss_pred cCCeeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeecccc
Q 019548 213 LGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQ 260 (339)
Q Consensus 213 ~~~~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~Ie 260 (339)
.|+..++.+-+ +--..+..+ --.++..+.....-+++.=+.+.+-
T Consensus 172 lGa~pv~m~~~-Evy~ALq~G--vvDg~e~~~~~~~~~~~~Ev~ky~~ 216 (326)
T 3fxb_A 172 FGATPTPLPWG-EVYGGLQTN--VIQGQENPTFFLYSTKIYEVTDYIT 216 (326)
T ss_dssp HTSEEEECCGG-GHHHHHHTT--SCCEEEEEHHHHHHTTGGGSCSEEE
T ss_pred cCCeeeecCHH-HHHHHHHcC--CcceEecCHHHHHhccHhhhcceeE
Confidence 78876655332 222222332 2346677666666666654444443
No 173
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=21.52 E-value=3.4e+02 Score=22.24 Aligned_cols=114 Identities=9% Similarity=0.004 Sum_probs=59.9
Q ss_pred CccccCCCHHHHHHHHHhCCCCeEEEeeeccCccchhhhHHHhh-cCCeEEEEEEEEeeeeeeccCCC---CCcCCcc--
Q 019548 121 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALPG---IKADQLK-- 194 (339)
Q Consensus 121 ~~~~~~~si~~Vf~aV~~g~ad~gVVPiENS~~G~V~~tlDlL~-~~~l~I~gEi~l~I~h~Ll~~~g---~~l~~I~-- 194 (339)
.++++.+ ..++++++.+|++|+++.++.-+ .+..+.+. ..++. .....++++++ .+++|++
T Consensus 83 v~~~~~~-~~~~~~~l~~g~~D~~~~~~~~~-----~~~~~~~~~~~p~~-------~~~~~~~~~~~~~i~~~~dL~g~ 149 (259)
T 2v25_A 83 IKLVAVN-AKTRGPLLDNGSVDAVIATFTIT-----PERKRIYNFSEPYY-------QDAIGLLVLKEKKYKSLADMKGA 149 (259)
T ss_dssp EEEEECC-TTTHHHHHHTTSCSEECSSCBCC-----HHHHTTEEECSCSE-------EEEEEEEEEGGGCCCSGGGCTTC
T ss_pred eEEEEcC-HHHHHHHHhCCCCCEEEecCccC-----HHHHhcCcccccce-------eCceEEEEeCCCCCCCHHHhCCC
Confidence 5667764 58999999999999987543211 11111111 11221 11122333221 1233332
Q ss_pred EEEecH--HHHHHHHHHHHhcCC--eeEecCCHHHHHHHHHhcCCCCeEEecCHHHHHH
Q 019548 195 RVLSHP--QALASSDIVLTQLGV--ARENVDDTASAAQYVASNGLRDAGAVASARAAEI 249 (339)
Q Consensus 195 ~VySHp--qal~QC~~~L~~~~~--~~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ 249 (339)
+|...+ ........++.+.+. ..+.+.|..++.+.+..+ .-.|++.+...+..
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 206 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAK--RVDAFSVDKSILLG 206 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHTT
T ss_pred EEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcC--CCcEEEecHHHHHH
Confidence 333222 112233455555554 567788999999988876 34577777765543
No 174
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=20.37 E-value=2.3e+02 Score=21.13 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=56.8
Q ss_pred EEEecHHHHHHHHHHHHhcCCeeEecCCHHHHHHHHHh-cCCCCeEEecCHHHHHHcCCceeeccccCCCCCeeeEEEEe
Q 019548 195 RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVAS-NGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLA 273 (339)
Q Consensus 195 ~VySHpqal~QC~~~L~~~~~~~i~~~STA~AA~~v~~-~~~~~~AAIas~~AA~~ygL~il~~~IeD~~~N~TRF~vi~ 273 (339)
-|=.++......+.+|...+.....+.+..+|.+.+.. . .++ ..|.........|+.++. .|.. ....+.+++++
T Consensus 20 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~~d-lvilD~~l~~~~g~~~~~-~l~~-~~~~~~ii~ls 95 (138)
T 2b4a_A 20 LVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-TCD-LLIVSDQLVDLSIFSLLD-IVKE-QTKQPSVLILT 95 (138)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-SCS-EEEEETTCTTSCHHHHHH-HHTT-SSSCCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-CCC-EEEEeCCCCCCCHHHHHH-HHHh-hCCCCCEEEEE
Confidence 33456777788888998878877777888888777665 4 233 444433322333444333 2332 23468899887
Q ss_pred -eCCCCCCCCCCceEEEEEEecCCcchHHHHHHH
Q 019548 274 -RDPIIPRTDKLFKTSIVFTLDEGPGVLFKALAV 306 (339)
Q Consensus 274 -~~~~~p~~~~~~Ktsi~~~~~~~pGaL~~iL~~ 306 (339)
....... .... ..=++.-|-.+..|...+..
T Consensus 96 ~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~ 127 (138)
T 2b4a_A 96 TGRHELIE-SSEH-NLSYLQKPFAISELRAAIDY 127 (138)
T ss_dssp SCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHH
T ss_pred CCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHH
Confidence 5533221 1111 11122224455566665543
No 175
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.08 E-value=1.1e+02 Score=22.83 Aligned_cols=112 Identities=10% Similarity=0.043 Sum_probs=62.3
Q ss_pred EEecHHHHHHHHHHHHh-cCCe-eEecCCHHHHHHHHHhcCCCCeEEecCHHHHHHcCCceeeccccCC-CCCeeeEEEE
Q 019548 196 VLSHPQALASSDIVLTQ-LGVA-RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVL 272 (339)
Q Consensus 196 VySHpqal~QC~~~L~~-~~~~-~i~~~STA~AA~~v~~~~~~~~AAIas~~AA~~ygL~il~~~IeD~-~~N~TRF~vi 272 (339)
|=.++......+.+|.. .+.. ...+.|..+|.+.+.+.. ++ ..|.........|+.++. .|... ....+.++++
T Consensus 14 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~-~d-lii~d~~l~~~~g~~~~~-~l~~~~~~~~~~ii~~ 90 (143)
T 3cnb_A 14 IEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK-PD-VVMLDLMMVGMDGFSICH-RIKSTPATANIIVIAM 90 (143)
T ss_dssp ECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC-CS-EEEEETTCTTSCHHHHHH-HHHTSTTTTTSEEEEE
T ss_pred EECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC-CC-EEEEecccCCCcHHHHHH-HHHhCccccCCcEEEE
Confidence 33567777888999998 7888 677788888888777652 43 444433323334444443 33332 3456888888
Q ss_pred eeCCCCCCCCC--CceEEEEEEecCCcchHHHHHHHHHhC
Q 019548 273 ARDPIIPRTDK--LFKTSIVFTLDEGPGVLFKALAVFALR 310 (339)
Q Consensus 273 ~~~~~~p~~~~--~~Ktsi~~~~~~~pGaL~~iL~~Fa~~ 310 (339)
+.......... ..-..-++.-|-.+..|...|.....+
T Consensus 91 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 91 TGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 76543110000 000112333355667777777665443
Done!