RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= 019548
         (339 letters)



>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
           tepidum TLS, structural genomics, PSI-2, protein
           structure initiative; HET: PHE; 2.30A {Chlorobium
           tepidum tls}
          Length = 283

 Score =  332 bits (853), Expect = e-114
 Identities = 109/242 (45%), Positives = 143/242 (59%), Gaps = 11/242 (4%)

Query: 93  NDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSS 152
           N  T   I+++G PG++SE AAL+     E +PC+ F+D F AV    AD AV+PIENS 
Sbjct: 2   NAMTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58

Query: 153 SGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALA-SSDIVLT 211
            GSIH+NYDLLLR  + I+ E  +    CLL LPG   +   + +SHPQAL    +   T
Sbjct: 59  GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFAT 118

Query: 212 QLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV 271
              +  E   DTA +A+ VA +  + A A+AS RA E+YGL+IL + + DE  NITRF  
Sbjct: 119 HPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178

Query: 272 LARDPIIPRTDKLF-------KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRK 324
           +A +     +           KTSIVF L    G LF+ALA FALR I+LTKIESRP RK
Sbjct: 179 IAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK 238

Query: 325 RP 326
           + 
Sbjct: 239 KA 240


>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
           (PDT), staphylococcus aureu aureus MU50, structural
           genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
           SCOP: c.94.1.1 d.58.18.3
          Length = 267

 Score =  294 bits (754), Expect = e-99
 Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 7/231 (3%)

Query: 98  VRISFKGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGS 155
           +++ + G  G+FS  A  + + + E    P     +  KAV        V+PIENS  G+
Sbjct: 4   MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 63

Query: 156 IHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGV 215
           I+   D L +  +   GE++L  NF L          +K+V S   A++ +   + Q   
Sbjct: 64  INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF 123

Query: 216 ARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARD 275
             + VD T  +   +         A+A   + E YG   +   I+D P N+TRFLV+   
Sbjct: 124 DYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQ 179

Query: 276 PIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRP 326
                 +      ++  + + PG+L   L  FAL  INL+ IESRP + + 
Sbjct: 180 QQFD-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL 229


>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
           midwest center for ST genomics, protein structure
           initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
           aurescens}
          Length = 313

 Score =  292 bits (750), Expect = 2e-98
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 7/238 (2%)

Query: 96  TKVRISFKGLPGSFSEDAALKAY--PKCETVPCDEFEDTFKAVELWLADKAVLPIENSSS 153
           + V  +F G  G+F+E A ++         +PC       + V    AD A++PIENS  
Sbjct: 5   SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVE 64

Query: 154 GSIHRNYDLLLR-HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 212
           G +    D +     L I+ E  +   F L+A PG++   +KR+ +H  A A   + + +
Sbjct: 65  GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124

Query: 213 L--GVARENVDDTASAAQYVASN-GLRDAGAVASARAAEIYGLNILADRIQDEPDNITRF 269
                       TA++A  +  +    +A   A   AAE  GLN+LA+ I D PD +TRF
Sbjct: 125 HLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184

Query: 270 LVLARDPIIPRTDKLFKTSIVFTL-DEGPGVLFKALAVFALREINLTKIESRPQRKRP 326
           ++++R   +P      KT++V  L ++ PG L + L  FA R +NL++IESRP  +  
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL 242


>3luy_A Probable chorismate mutase; structural genomics, APC38059,
           3-phenylp PSI-2, protein structure initiative; HET: PPY;
           2.00A {Bifidobacterium adolescentis}
          Length = 329

 Score =  277 bits (711), Expect = 3e-92
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 23/249 (9%)

Query: 96  TKVRISFKGLPGSFSEDAALKAYPK--------CETVPCDEFEDTFKAVELWLADKAVLP 147
           +  ++ + G  G+F+  AA+ A  +         + +P D+      A +       ++ 
Sbjct: 5   SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVA 63

Query: 148 IENSSSGSIHRNYDLLLRHR-LHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASS 206
            EN+  G +  N D L+  + L     V +   F      G    + +   +HP  LA  
Sbjct: 64  WENNVEGYVVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQC 123

Query: 207 DIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNI 266
              + +  ++ +     A+A + +         A   A   E+Y +  +   IQD     
Sbjct: 124 KRFIAEHRLSTQPATSNAAACRDLI----PGEIAFGPAICGELYDITRIGTAIQDYQGAA 179

Query: 267 TRFLVLARDPIIPRTDKLF---------KTSIVFTLDEGPGVLFKALAVFALREINLTKI 317
           T FLVL+    + R                  +  L  GPGVL   L VF    +N+T  
Sbjct: 180 TDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSF 239

Query: 318 ESRPQRKRP 326
            SRP + R 
Sbjct: 240 ISRPIKGRT 248


>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
           hydroxylase, phosphorylation, intrasteric regulation,
           allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
           d.58.18.3 d.178.1.1 PDB: 2phm_A
          Length = 429

 Score = 87.1 bits (215), Expect = 3e-19
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 246 AAEIYGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLFKALA 305
           AA +    +L+ ++ D     +             +++    S++F+L E  G L K L 
Sbjct: 2   AAVVLENGVLSRKLSDFGQETSYIE--------DNSNQNGAISLIFSLKEEVGALAKVLR 53

Query: 306 VFALREINLTKIESRPQRKRP 326
           +F   +INLT IESRP R   
Sbjct: 54  LFEENDINLTHIESRPSRLNK 74


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 56/296 (18%), Positives = 94/296 (31%), Gaps = 95/296 (32%)

Query: 2   ALECVAVLGWGDSGSRASGLVFNGVRNSNRTP---RKCVCRG-GF-------SGLSGDSV 50
             + + VL +   G R     +    N++  P      +    G        S L+ + V
Sbjct: 296 VRKAITVLFF--IGVRCY-EAY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349

Query: 51  IKSADNQNTGKS-------SNVND-----VPG------KLCKDLISLPKPLTVADFTVTP 92
               +  N+          S VN      V G       L   L     P +  D +  P
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP-SGLDQSRIP 408

Query: 93  NDGTKVRISFKGLPGS--F-S---EDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVL 146
               K++ S + LP +  F S     A+       + +  D  ++       + A    +
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPAS-------DLINKDLVKNNVS----FNAKDIQI 457

Query: 147 PIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLKRVLSH---- 199
           P+ ++  GS  R     +  R+     V      C++ LP +      Q K   +H    
Sbjct: 458 PVYDTFDGSDLRVLSGSISERI-----VD-----CIIRLP-VKWETTTQFK--ATHILDF 504

Query: 200 -PQALASSDI-VLTQLGVARENVDDTASAAQYVASNGLR--DAGAVASARAAEIYG 251
            P    +S + VLT       N D T          G+R   AG +      + YG
Sbjct: 505 GP--GGASGLGVLTH-----RNKDGT----------GVRVIVAGTLDINPDDD-YG 542



 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 53/338 (15%), Positives = 95/338 (28%), Gaps = 140/338 (41%)

Query: 21  LVFNGVRNSNRTPRKCVCRGGFSGLSGDSVIKSADNQNTGKSS--NVNDVPGKLCKDLI- 77
           L F GVR     P         + L    +  S +N     S   +++++  +  +D + 
Sbjct: 303 LFFIGVRCYEAYPN--------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354

Query: 78  ----SLP--KPLTVA------DFTVTPNDGTKVRISFKGLPGS-FSEDAAL---KAYPKC 121
                LP  K + ++      +  V+            G P S +  +  L   KA    
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVS------------GPPQSLYGLNLTLRKAKAPSGL 402

Query: 122 ET--VPCDE----FEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQ 175
           +   +P  E    F + F            LP+    +   H +                
Sbjct: 403 DQSRIPFSERKLKFSNRF------------LPV----ASPFHSHL--------------- 431

Query: 176 LAANFCLLALPGIKADQLKRVLSHPQALASSDIVLT--QLGVARENVDDTASAAQYVASN 233
           L       A   I  D           L  +++      + +    V DT         +
Sbjct: 432 LVP-----ASDLINKD-----------LVKNNVSFNAKDIQIP---VYDTF--------D 464

Query: 234 GLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV--LARDPII-PRTDKLFKTSIV 290
           G  D                     ++    +I+  +V  + R P+    T +   T I 
Sbjct: 465 G-SD---------------------LRVLSGSISERIVDCIIRLPVKWETTTQFKATHI- 501

Query: 291 FTLDEGPGVLFKALAVFA-------LREINLTKIESRP 321
             LD GPG       +         +R I    ++  P
Sbjct: 502 --LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537



 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 65/402 (16%), Positives = 102/402 (25%), Gaps = 173/402 (43%)

Query: 78  SLPKP---LTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFK 134
            LP+P       D    P    ++   F G   S  E + +  + +   +   EFE+ + 
Sbjct: 40  ILPEPTEGFAADD---EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY- 95

Query: 135 AVELWLADK------AVLPIENSS----SGSIHRNY----------------DLLLRHRL 168
                L         A L  EN +    +  + +NY                  L R   
Sbjct: 96  -----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA-- 148

Query: 169 HIVGEVQLAANF---------------------------------CLLALPGIKAD---- 191
              G  QL A F                                  L  L     D    
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208

Query: 192 -----QLKRVLSHPQA------LASSD-----IVLTQL----------GVARENVDDTAS 225
                 +   L +P        L S       I + QL          G     +     
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268

Query: 226 AAQYVASNGLRDAGAVASA----------------------RAAEIYGLNILADRI-QDE 262
            A    S GL  A A+A                        R  E Y    L   I +D 
Sbjct: 269 GAT-GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327

Query: 263 PDN----------ITRFLVLARDPIIPRTDK--------------LF--KTSIVFTLDEG 296
            +N          I+    L ++ +    +K              L     ++V +   G
Sbjct: 328 LENNEGVPSPMLSISN---LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---G 381

Query: 297 PGVLFKALAVF--ALREI------NLTKIESRPQRKRPLRVV 330
           P    ++L      LR+       + ++I   P  +R L+  
Sbjct: 382 PP---QSLYGLNLTLRKAKAPSGLDQSRI---PFSERKLKFS 417



 Score = 39.6 bits (92), Expect = 0.001
 Identities = 44/277 (15%), Positives = 90/277 (32%), Gaps = 104/277 (37%)

Query: 80   PKPLTVADFTVTPNDGTKVRISFKGLPGSFSEDAALKAYPKCETVPCDEFEDTFK----- 134
            P  LT+  F      G ++R ++  +      D  LK     + +       TF+     
Sbjct: 1669 PVNLTIH-FG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725

Query: 135  ------------AVE--LW--LADKAVLPI----------ENS----SSGSIHRNYDL-- 162
                         +E   +  L  K ++P           E +     +  +     +  
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM----SIES 1781

Query: 163  ---LLRHRLHIVGE-VQLAA--------NFCLLAL-PG-----IKADQLKRVLSHPQALA 204
               ++ +R    G  +Q+A         N+ ++A+ PG        + L+ V+   +   
Sbjct: 1782 LVEVVFYR----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGK 1835

Query: 205  SSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPD 264
             +  ++    +   NV++     QYVA+ G  D  A+       +  LN +  ++Q    
Sbjct: 1836 RTGWLVE---IVNYNVENQ----QYVAA-G--DLRAL--DTVTNV--LNFI--KLQ---- 1875

Query: 265  NITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPGVLF 301
             I                 + +     +L+E  G LF
Sbjct: 1876 KI----------------DIIELQKSLSLEEVEGHLF 1896


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 44.1 bits (103), Expect = 6e-05
 Identities = 44/274 (16%), Positives = 90/274 (32%), Gaps = 53/274 (19%)

Query: 73  CKDLISLPKPLTVADFTVTP-NDGTKVRIS---FKGLPGSFSEDAA-------LKAYPKC 121
            KD++S+ +   V +F      D  K  +S      +  S    +        L +  + 
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE- 76

Query: 122 ETVPCDEF-EDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANF 180
           E V   +F E+  +    +L     +  E      + R Y +  R RL+   +V     F
Sbjct: 77  EMV--QKFVEEVLRINYKFLMSP--IKTEQRQPSMMTRMY-IEQRDRLYNDNQV-----F 126

Query: 181 CLLALPGIKA-DQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAG 239
               +  ++   +L++ L     L  +  VL   GV         S   +VA +      
Sbjct: 127 AKYNVSRLQPYLKLRQAL---LELRPAKNVLID-GVL-------GSGKTWVALDVCLSYK 175

Query: 240 AVASARAAEIYGLNI-LADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLDEGPG 298
            V      +I+ LN+   +  +   + + + L         R+D    ++I   +     
Sbjct: 176 -VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS--SNIKLRIHSI-- 230

Query: 299 VLFKALAVFALREINLTKIESRPQRKRPLRVVDD 332
                       +  L ++      +  L V+ +
Sbjct: 231 ------------QAELRRLLKSKPYENCLLVLLN 252



 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 51/319 (15%), Positives = 99/319 (31%), Gaps = 93/319 (29%)

Query: 49  SVIKSADNQNTGKSSNVNDVPGKLCKDLISLPK----------PLTVADFTVTPNDGTKV 98
           S IK+   Q +  +    +   +L  D     K           L  A   + P      
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--- 152

Query: 99  RISFKGLPGS----FSEDAALKAYPKCE--------TV-PCDEFEDTFKAVE-LWL-ADK 143
            +   G+ GS     + D  L    +C+         +  C+  E   + ++ L    D 
Sbjct: 153 -VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 144 AVLPIENSSSGSIHRNYDL------LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVL 197
                 + SS    R + +      LL+ + +           CLL L       +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVL-----LNV---- 253

Query: 198 SHPQALASSDI-----VLTQLGVARENVDDTASAAQYV------ASNGLRDAGAVA-SAR 245
            + +A  + ++     + T+     + V D  SAA          S  L      +   +
Sbjct: 254 QNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 246 AAEI--------------YGLNILADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVF 291
             +                 L+I+A+ I+D       +  +  D    +   + ++S+  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLN- 364

Query: 292 TLDEGPGV---LFKALAVF 307
            L+  P     +F  L+VF
Sbjct: 365 VLE--PAEYRKMFDRLSVF 381



 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 49/301 (16%), Positives = 85/301 (28%), Gaps = 77/301 (25%)

Query: 73  CKDLISLPKP-LT---VADFTVTPNDGTKVRISFKGLPGS-------FSEDA-------- 113
           CKD+  +PK  L+   +    ++ +  +     F  L          F E+         
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 114 --ALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIH---RNYDLLLRHRL 168
              +K   +  ++    + +      L+  D  V    N S    +   R   L LR   
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRD--RLY-NDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151

Query: 169 HIV-------GEVQLAANFC-----LLALPG----IKADQLKR---VLSHPQALASS-DI 208
           +++       G+  +A + C        +      +          VL   Q L    D 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 209 VLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITR 268
             T       N+     + Q      L+               L +L + +Q+       
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------LLVLLN-VQN-AKAWNA 261

Query: 269 F------LVLARDPIIPRTDKLF----------KTSIVFTLDEGPGVLFKAL--AVFALR 310
           F      L+  R   +  TD L             S+  T DE   +L K L      L 
Sbjct: 262 FNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 311 E 311
            
Sbjct: 320 R 320


>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
           subunit arrangement, acetylation, ATP-binding,
           chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
           taurus}
          Length = 518

 Score = 27.1 bits (61), Expect = 8.7
 Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 2/29 (6%)

Query: 207 DIVLTQLGVARENVDDTASAAQYVASNGL 235
           +++L Q  + R+ + D   A  ++    +
Sbjct: 275 NVLLIQKSILRDALSDL--ALHFLNKMKI 301


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,082,802
Number of extensions: 312630
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 20
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)