RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 019548
         (339 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  154 bits (389), Expect = 2e-46
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 99  RISFKGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGSI 156
           ++ + G  G+FS  A  + + + E    P     +  KAV        V+PIENS  G+I
Sbjct: 2   QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61

Query: 157 HRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVA 216
           +   D L +  +   GE++L  NF L          +K+V S   A++ +   + Q    
Sbjct: 62  NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFD 121

Query: 217 RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDP 276
            + VD T  +   +         A+A   + E YG   +   I+D P N+TRFLV+    
Sbjct: 122 YDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQ 177

Query: 277 IIPR 280
              +
Sbjct: 178 QFDQ 181


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 282 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRP 326
           ++    S++F+L E  G L K L +F   +INLT IESRP R   
Sbjct: 12  NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK 56


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 287 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRP 326
             ++  + + PG+L   L  FAL  INL+ IESRP + + 
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL 42


>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein
           TlpA, soluble domain {Bradyrhizobium japonicum [TaxId:
           375]}
          Length = 176

 Score = 26.5 bits (57), Expect = 3.7
 Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 76  LISLPKPLTVADFTVTPNDGTKVRIS-FKG 104
           L     PL + D      DG   ++S F+G
Sbjct: 27  LTMASAPLKLPDLAFEDADGKPKKLSDFRG 56


>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 25.0 bits (54), Expect = 7.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 314 LTKIESRPQRKRPLRVVDDSNNGTA 338
             +I       +P++VV D  NG A
Sbjct: 6   FKQIRDDIAMAKPMKVVVDCGNGVA 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,182,786
Number of extensions: 53492
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 6
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)