Query 019549
Match_columns 339
No_of_seqs 319 out of 1521
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 5.2E-35 1.1E-39 250.8 12.6 168 55-224 2-175 (183)
2 PRK12361 hypothetical protein; 100.0 9.5E-29 2.1E-33 254.9 19.7 165 51-219 63-237 (547)
3 smart00195 DSPc Dual specifici 100.0 2.1E-28 4.7E-33 207.9 16.4 131 81-217 2-137 (138)
4 cd00127 DSPc Dual specificity 99.9 6E-27 1.3E-31 198.1 14.9 133 80-216 2-139 (139)
5 PF00782 DSPc: Dual specificit 99.9 1.6E-26 3.5E-31 194.8 11.1 128 87-218 1-133 (133)
6 KOG1718 Dual specificity phosp 99.9 3E-25 6.5E-30 193.3 14.3 143 76-224 13-160 (198)
7 KOG1717 Dual specificity phosp 99.9 3.2E-24 6.9E-29 198.5 12.0 139 81-223 173-316 (343)
8 PTZ00242 protein tyrosine phos 99.9 4.5E-23 9.7E-28 182.5 16.1 139 77-220 8-159 (166)
9 KOG1716 Dual specificity phosp 99.9 3.5E-23 7.5E-28 197.7 15.6 145 79-226 74-223 (285)
10 PTZ00393 protein tyrosine phos 99.9 1.7E-22 3.8E-27 186.6 15.6 132 86-222 93-232 (241)
11 KOG1720 Protein tyrosine phosp 99.8 1.7E-18 3.7E-23 156.0 14.4 117 99-220 88-209 (225)
12 PF05706 CDKN3: Cyclin-depende 99.6 2.5E-16 5.4E-21 138.4 6.8 108 84-192 40-168 (168)
13 COG2453 CDC14 Predicted protei 99.6 4.5E-15 9.8E-20 132.9 13.2 95 124-219 67-167 (180)
14 PF03162 Y_phosphatase2: Tyros 99.6 5.5E-16 1.2E-20 137.0 6.9 138 79-219 6-150 (164)
15 KOG2836 Protein tyrosine phosp 99.6 3.5E-14 7.6E-19 120.1 12.1 125 88-217 20-154 (173)
16 TIGR01244 conserved hypothetic 99.5 1.2E-13 2.6E-18 118.3 11.9 115 81-201 3-127 (135)
17 PF04273 DUF442: Putative phos 99.4 8.7E-13 1.9E-17 109.4 7.3 98 80-183 2-105 (110)
18 smart00012 PTPc_DSPc Protein t 99.3 1.8E-11 3.8E-16 97.5 10.5 84 132-215 5-102 (105)
19 smart00404 PTPc_motif Protein 99.3 1.8E-11 3.8E-16 97.5 10.5 84 132-215 5-102 (105)
20 PLN02727 NAD kinase 99.2 1.6E-11 3.4E-16 130.9 9.1 97 86-185 262-363 (986)
21 cd00047 PTPc Protein tyrosine 99.1 3.1E-10 6.8E-15 104.4 10.3 87 128-214 128-227 (231)
22 smart00194 PTPc Protein tyrosi 99.1 5.5E-10 1.2E-14 104.7 10.0 79 136-214 165-254 (258)
23 COG3453 Uncharacterized protei 99.0 1.9E-09 4.2E-14 89.7 10.7 112 80-197 3-124 (130)
24 KOG1572 Predicted protein tyro 99.0 3.7E-09 8E-14 97.5 11.5 119 79-199 59-188 (249)
25 PRK15375 pathogenicity island 98.9 8.2E-09 1.8E-13 104.6 11.3 86 135-220 429-530 (535)
26 PHA02742 protein tyrosine phos 98.9 1.3E-08 2.8E-13 98.3 11.6 84 136-219 190-295 (303)
27 PF13350 Y_phosphatase3: Tyros 98.9 3.6E-09 7.8E-14 93.0 6.9 107 83-193 16-158 (164)
28 KOG2283 Clathrin coat dissocia 98.9 6.5E-09 1.4E-13 104.6 9.6 136 79-220 14-175 (434)
29 PHA02740 protein tyrosine phos 98.9 1.7E-08 3.7E-13 97.4 12.0 82 136-217 185-285 (298)
30 PHA02747 protein tyrosine phos 98.8 2E-08 4.3E-13 97.5 11.3 84 136-219 191-298 (312)
31 PHA02746 protein tyrosine phos 98.8 3.3E-08 7E-13 96.4 11.1 84 136-219 209-313 (323)
32 PF00102 Y_phosphatase: Protei 98.8 3.8E-08 8.3E-13 89.4 10.9 80 136-215 142-232 (235)
33 PHA02738 hypothetical protein; 98.8 5.4E-08 1.2E-12 94.8 11.1 84 136-219 186-293 (320)
34 KOG2386 mRNA capping enzyme, g 98.7 4.5E-08 9.9E-13 96.8 8.2 124 96-220 52-186 (393)
35 KOG0790 Protein tyrosine phosp 98.6 8.9E-08 1.9E-12 95.0 7.8 118 97-214 372-515 (600)
36 COG5350 Predicted protein tyro 98.6 2E-07 4.3E-12 80.9 8.8 111 99-210 26-146 (172)
37 KOG0792 Protein tyrosine phosp 98.5 4.2E-07 9.2E-12 97.9 10.2 88 135-222 1034-1132(1144)
38 PF14566 PTPlike_phytase: Inos 98.5 1.5E-07 3.3E-12 81.9 5.7 62 122-185 85-146 (149)
39 COG5599 PTP2 Protein tyrosine 98.5 1.9E-07 4E-12 87.7 6.0 194 17-223 78-297 (302)
40 COG2365 Protein tyrosine/serin 98.2 2.8E-06 6.1E-11 80.0 7.7 124 80-206 48-184 (249)
41 KOG0791 Protein tyrosine phosp 98.2 1E-05 2.2E-10 79.1 10.0 93 131-223 254-357 (374)
42 KOG0789 Protein tyrosine phosp 98.0 2E-05 4.4E-10 78.3 9.6 61 162-222 298-369 (415)
43 KOG0793 Protein tyrosine phosp 97.9 2.9E-05 6.4E-10 80.9 8.8 85 131-215 894-990 (1004)
44 PF04179 Init_tRNA_PT: Initiat 97.7 0.00036 7.9E-09 71.0 11.3 130 82-215 291-449 (451)
45 KOG4228 Protein tyrosine phosp 97.4 0.00021 4.6E-09 78.1 5.9 86 132-218 986-1083(1087)
46 KOG4228 Protein tyrosine phosp 97.2 0.00026 5.7E-09 77.4 4.0 76 135-213 701-790 (1087)
47 PF14671 DSPn: Dual specificit 91.9 0.31 6.8E-06 42.2 5.1 63 138-201 39-113 (141)
48 KOG4471 Phosphatidylinositol 3 86.1 3 6.5E-05 43.9 8.0 34 151-184 362-395 (717)
49 PLN02160 thiosulfate sulfurtra 84.1 2.1 4.6E-05 36.4 5.1 21 161-182 79-99 (136)
50 cd01518 RHOD_YceA Member of th 78.5 11 0.00023 29.7 7.0 19 161-180 59-77 (101)
51 PF06602 Myotub-related: Myotu 77.7 4.7 0.0001 40.0 5.7 25 161-185 229-253 (353)
52 COG0607 PspE Rhodanese-related 76.3 7.5 0.00016 30.5 5.6 66 101-184 15-81 (110)
53 KOG1089 Myotubularin-related p 72.8 6.5 0.00014 41.4 5.4 34 151-184 331-365 (573)
54 cd01448 TST_Repeat_1 Thiosulfa 70.8 12 0.00026 30.4 5.7 24 161-185 77-100 (122)
55 COG1054 Predicted sulfurtransf 65.1 15 0.00032 35.8 5.7 77 83-174 105-183 (308)
56 PRK01415 hypothetical protein; 64.3 15 0.00033 34.7 5.7 19 161-180 169-187 (247)
57 cd01523 RHOD_Lact_B Member of 55.0 13 0.00029 29.0 3.0 20 161-181 59-78 (100)
58 cd01533 4RHOD_Repeat_2 Member 53.4 27 0.00059 27.7 4.7 17 162-179 65-81 (109)
59 PF02571 CbiJ: Precorrin-6x re 53.0 14 0.00031 34.8 3.4 82 86-169 46-136 (249)
60 PRK00142 putative rhodanese-re 52.2 25 0.00054 34.3 5.0 22 162-185 170-191 (314)
61 PRK08057 cobalt-precorrin-6x r 47.0 13 0.00028 35.2 2.0 79 86-168 45-132 (248)
62 PF04343 DUF488: Protein of un 47.0 83 0.0018 25.9 6.8 42 98-139 6-54 (122)
63 cd01522 RHOD_1 Member of the R 46.6 36 0.00077 27.7 4.4 20 161-181 62-81 (117)
64 cd03174 DRE_TIM_metallolyase D 43.5 2.6E+02 0.0056 25.6 11.6 113 98-213 121-260 (265)
65 cd01528 RHOD_2 Member of the R 42.8 45 0.00099 26.0 4.4 19 162-181 57-75 (101)
66 PF03668 ATP_bind_2: P-loop AT 37.8 57 0.0012 31.6 4.9 19 165-183 244-262 (284)
67 cd07937 DRE_TIM_PC_TC_5S Pyruv 36.3 3.8E+02 0.0082 25.4 14.0 119 98-220 124-269 (275)
68 TIGR03865 PQQ_CXXCW PQQ-depend 36.0 1E+02 0.0022 26.8 5.9 21 162-182 115-135 (162)
69 PRK10886 DnaA initiator-associ 34.0 83 0.0018 28.6 5.1 37 146-185 24-60 (196)
70 PRK11784 tRNA 2-selenouridine 32.4 1.3E+02 0.0028 29.8 6.6 20 162-181 87-106 (345)
71 TIGR00715 precor6x_red precorr 32.2 25 0.00054 33.3 1.5 82 87-168 47-134 (256)
72 TIGR00853 pts-lac PTS system, 31.3 43 0.00093 26.7 2.5 18 163-181 3-20 (95)
73 PRK05416 glmZ(sRNA)-inactivati 31.3 76 0.0016 30.6 4.7 19 165-183 247-265 (288)
74 TIGR00204 dxs 1-deoxy-D-xylulo 31.1 53 0.0012 35.1 3.9 45 124-176 233-277 (617)
75 cd07944 DRE_TIM_HOA_like 4-hyd 30.5 4.7E+02 0.01 24.7 12.3 108 98-209 115-248 (266)
76 cd01530 Cdc25 Cdc25 phosphatas 29.0 59 0.0013 26.8 3.1 21 161-181 66-86 (121)
77 PF13292 DXP_synthase_N: 1-deo 28.8 77 0.0017 30.5 4.1 41 123-171 229-269 (270)
78 PRK13352 thiamine biosynthesis 27.8 1.8E+02 0.0039 29.8 6.7 119 102-220 87-253 (431)
79 PRK05320 rhodanese superfamily 27.6 1.1E+02 0.0024 28.9 5.0 17 162-179 174-190 (257)
80 cd01519 RHOD_HSP67B2 Member of 27.6 65 0.0014 25.0 3.0 17 162-179 65-81 (106)
81 COG0794 GutQ Predicted sugar p 27.4 99 0.0022 28.5 4.4 33 147-185 26-58 (202)
82 cd01531 Acr2p Eukaryotic arsen 27.2 1.3E+02 0.0028 23.9 4.8 21 162-182 61-81 (113)
83 PF01964 ThiC: ThiC family; I 27.0 1.6E+02 0.0034 30.1 6.1 119 102-220 86-249 (420)
84 cd01534 4RHOD_Repeat_3 Member 27.0 75 0.0016 24.4 3.2 16 163-179 56-71 (95)
85 COG1660 Predicted P-loop-conta 26.9 98 0.0021 29.9 4.4 36 148-183 221-263 (286)
86 cd01443 Cdc25_Acr2p Cdc25 enzy 26.7 1.1E+02 0.0024 24.4 4.3 18 163-180 66-83 (113)
87 cd01447 Polysulfide_ST Polysul 26.6 71 0.0015 24.5 3.0 18 161-179 59-76 (103)
88 COG2927 HolC DNA polymerase II 26.5 65 0.0014 28.1 2.9 21 151-171 17-37 (144)
89 COG0422 ThiC Thiamine biosynth 26.4 2.2E+02 0.0047 29.0 6.9 111 102-219 88-250 (432)
90 PRK09590 celB cellobiose phosp 26.1 1.9E+02 0.0041 23.6 5.5 20 164-185 2-21 (104)
91 COG0279 GmhA Phosphoheptose is 26.0 2.3E+02 0.0051 25.5 6.4 50 145-200 23-72 (176)
92 PF04364 DNA_pol3_chi: DNA pol 25.9 1E+02 0.0022 26.2 4.1 23 149-171 15-37 (137)
93 cd01520 RHOD_YbbB Member of th 25.5 1.3E+02 0.0029 24.6 4.7 22 160-181 83-104 (128)
94 cd01526 RHOD_ThiF Member of th 25.2 73 0.0016 25.9 3.0 19 161-180 70-88 (122)
95 cd01529 4RHOD_Repeats Member o 25.2 72 0.0016 24.5 2.8 19 161-180 54-72 (96)
96 PRK10287 thiosulfate:cyanide s 25.2 1.4E+02 0.003 24.2 4.5 19 162-181 59-77 (104)
97 PRK13938 phosphoheptose isomer 25.1 1.4E+02 0.0031 27.0 5.1 40 143-185 25-64 (196)
98 PRK05728 DNA polymerase III su 24.9 96 0.0021 26.5 3.7 24 148-171 14-37 (142)
99 PF00581 Rhodanese: Rhodanese- 24.8 2.3E+02 0.0049 21.7 5.7 72 104-183 11-86 (113)
100 PF10302 DUF2407: DUF2407 ubiq 24.8 43 0.00093 27.1 1.4 11 163-173 85-95 (97)
101 cd05567 PTS_IIB_mannitol PTS_I 24.7 79 0.0017 24.4 2.9 14 164-177 1-14 (87)
102 TIGR02482 PFKA_ATP 6-phosphofr 24.2 4.3E+02 0.0093 25.7 8.5 79 99-177 85-173 (301)
103 cd01532 4RHOD_Repeat_1 Member 24.2 1E+02 0.0022 23.7 3.4 22 163-184 50-71 (92)
104 TIGR00190 thiC thiamine biosyn 23.6 2.6E+02 0.0056 28.6 6.9 119 102-220 87-250 (423)
105 PRK00414 gmhA phosphoheptose i 23.6 1.8E+02 0.0039 26.0 5.4 36 145-183 26-61 (192)
106 cd01525 RHOD_Kc Member of the 23.2 90 0.0019 24.2 3.0 18 163-181 65-82 (105)
107 cd01449 TST_Repeat_2 Thiosulfa 22.2 1E+02 0.0023 24.4 3.3 18 162-180 77-94 (118)
108 KOG1530 Rhodanese-related sulf 21.9 1.5E+02 0.0032 25.7 4.2 16 163-179 89-104 (136)
109 PF13580 SIS_2: SIS domain; PD 21.7 2E+02 0.0044 24.0 5.1 37 145-184 17-53 (138)
110 PRK08057 cobalt-precorrin-6x r 20.6 1.3E+02 0.0029 28.3 4.1 65 95-160 180-247 (248)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=5.2e-35 Score=250.85 Aligned_cols=168 Identities=61% Similarity=1.029 Sum_probs=159.0
Q ss_pred HHHHHHhhhhhHHHHHhhhcccccCcccccCcEEEcCCCCC-CChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEE
Q 019549 55 GARALFYPTLLYNVVRNKFQAEFRWWDRVDEFLLLGAVPFP-TDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHL 133 (339)
Q Consensus 55 ~a~~l~~P~ll~~~~~~~l~~~~~~~s~I~~~LylGs~p~a-~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l 133 (339)
++|++|||+|+||+++++ .+.|+|| +|.+++.+|.+|+. .+.+.++++|+..|+++++++|...+...|+..||+++
T Consensus 2 ~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L 79 (183)
T KOG1719|consen 2 GARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFL 79 (183)
T ss_pred CceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeE
Confidence 678999999999999998 6689988 99999999999988 68899999999999999999998888889999999999
Q ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHH
Q 019549 134 VIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQ 208 (339)
Q Consensus 134 ~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q 208 (339)
.+|+.|+...|+.+.+.++++||++....|+.|+|||++|++||+|+++||| |++++|++++|+.||.+.+.+.|
T Consensus 80 ~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Q 159 (183)
T KOG1719|consen 80 VIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQ 159 (183)
T ss_pred EeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHH
Confidence 9999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhc
Q 019549 209 WQAVLEYYNLRVNMAC 224 (339)
Q Consensus 209 ~~~L~~f~~~~~~~~~ 224 (339)
|+.|.+|++....+..
T Consensus 160 w~~l~ef~~~~~~~~s 175 (183)
T KOG1719|consen 160 WDVLKEFYKQIVANAS 175 (183)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999988765553
No 2
>PRK12361 hypothetical protein; Provisional
Probab=99.96 E-value=9.5e-29 Score=254.91 Aligned_cols=165 Identities=28% Similarity=0.423 Sum_probs=144.0
Q ss_pred HHHHHHHHHHhhhhh----HHHHHhhhcccccCcccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCccccc
Q 019549 51 LIGAGARALFYPTLL----YNVVRNKFQAEFRWWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYH 126 (339)
Q Consensus 51 l~~~~a~~l~~P~ll----~~~~~~~l~~~~~~~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~ 126 (339)
-++.+++|+|+||++ |+++.++. ...+++++|.|+||+|+.+.+.+.+.|+++||++||||+.|.+.. .....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--ccccc
Confidence 356799999999995 44333333 467899999999999999999999999999999999999776532 11223
Q ss_pred ccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh------cCHHHHHHHHHhhCC
Q 019549 127 AHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL------MTPDAAYDYVRSIRP 200 (339)
Q Consensus 127 ~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL------ms~~eAl~~Vr~~RP 200 (339)
..+++|+++|+.|. ..|+.++++++++||++..+++++|||||++|+|||+++++||| +++++|+++||++||
T Consensus 140 ~~~i~yl~iPi~D~-~~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 140 EEDIDYLNIPILDH-SVPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred ccCceEEEeecCCC-CCCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 46899999999996 67899999999999999999999999999999999999999999 699999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHH
Q 019549 201 RVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 201 ~v~pn~~q~~~L~~f~~~~ 219 (339)
.+.||+.|+++|++|++..
T Consensus 219 ~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 219 TARLNKRQLRALEKMLEQG 237 (547)
T ss_pred CCCCCHHHHHHHHHHHHcC
Confidence 9999999999999998754
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.96 E-value=2.1e-28 Score=207.93 Aligned_cols=131 Identities=27% Similarity=0.408 Sum_probs=121.4
Q ss_pred ccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 019549 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA 160 (339)
Q Consensus 81 s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~ 160 (339)
++|+|+||+|++|.+.+.+.|+++||++||||+.+.+. +...+++|+++|+.|....+..+.+.++++||+...
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~ 75 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAE 75 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999887542 124789999999999656778899999999999999
Q ss_pred hCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 217 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~ 217 (339)
.++++|||||.+|+|||+++++||| |++++|+++|+++||.+.||++|+++|+.|++
T Consensus 76 ~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 76 KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 9999999999999999999999998 79999999999999999999999999999986
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.95 E-value=6e-27 Score=198.14 Aligned_cols=133 Identities=29% Similarity=0.390 Sum_probs=121.8
Q ss_pred cccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH
Q 019549 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN 159 (339)
Q Consensus 80 ~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~ 159 (339)
.++|.|+||+|++|.+.+.+.|+++||++||||+++.+. ..+...|++|+++|+.|....+....+..+++||+..
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999987553 2445689999999999976566778899999999999
Q ss_pred HhCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHH
Q 019549 160 ALSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYY 216 (339)
Q Consensus 160 ~~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~ 216 (339)
..++++|||||.+|.|||++++++|| |++++|+++||++||.+.||+.|++||.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 98899999999999999999999999 7999999999999999999999999999985
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.94 E-value=1.6e-26 Score=194.81 Aligned_cols=128 Identities=35% Similarity=0.513 Sum_probs=118.3
Q ss_pred EEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeE
Q 019549 87 LLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTT 166 (339)
Q Consensus 87 LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~V 166 (339)
||+|+.+.+. ...|+++||++|||++.+.+.. ..+...+++|+++|+.|....+..+.+.++++||+++..++++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999875432 34567899999999999667889999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHH
Q 019549 167 YVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNL 218 (339)
Q Consensus 167 LVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~ 218 (339)
||||.+|+|||+++++||| |++++|+++++++||.+.|++.|+++|..|++.
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999 899999999999999999999999999999963
No 6
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.93 E-value=3e-25 Score=193.27 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=129.7
Q ss_pred cccCcccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHH
Q 019549 76 EFRWWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDF 155 (339)
Q Consensus 76 ~~~~~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~f 155 (339)
++.-.++|++.||+++--.+.+...+++.||++|||.+.|.+.. .+ .+++|..+|+.|....++.++|+.+.|.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~----~l--~~~qy~kv~~~D~p~~~l~~hfD~vAD~ 86 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNT----SL--PDIQYMKVPLEDTPQARLYDHFDPVADK 86 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCc----cC--CCceeEEEEcccCCcchhhhhhhHHHHH
Confidence 44456999999999977788899999999999999998875432 22 5789999999999889999999999999
Q ss_pred HHHHHhCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhhhc
Q 019549 156 ICENALSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMAC 224 (339)
Q Consensus 156 I~~~~~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~~~ 224 (339)
|+.....||++||||.+|++||+++++||| |++.||+.+++++||.+.||-+||+||..||+.+..+..
T Consensus 87 I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~s 160 (198)
T KOG1718|consen 87 IHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNAS 160 (198)
T ss_pred HHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCe
Confidence 999999999999999999999999999999 899999999999999999999999999999998876664
No 7
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.91 E-value=3.2e-24 Score=198.48 Aligned_cols=139 Identities=23% Similarity=0.254 Sum_probs=127.1
Q ss_pred ccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 019549 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA 160 (339)
Q Consensus 81 s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~ 160 (339)
.+|+|+||+|+...+.+.+.|+++||++|||+++..+. .+-+...+.|..||+.|+........|++++.||++++
T Consensus 173 V~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn----~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeAr 248 (343)
T KOG1717|consen 173 VEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPN----NFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEAR 248 (343)
T ss_pred hhhccchhcccccccccHHHHHhcCceEEEecCCCCcc----hhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhh
Confidence 68999999999999999999999999999999986443 23344668899999999988889999999999999999
Q ss_pred hCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhhh
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMA 223 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~~ 223 (339)
.++..|||||-+|++||+|+++||| .++.+|+.+|+.++..+.||..|+-||..|++.+....
T Consensus 249 sk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 249 SKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred ccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 9999999999999999999999999 49999999999999999999999999999999875433
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=4.5e-23 Score=182.51 Aligned_cols=139 Identities=24% Similarity=0.263 Sum_probs=121.8
Q ss_pred ccCcccccCcEEEcCCCCCCCh----hHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHH
Q 019549 77 FRWWDRVDEFLLLGAVPFPTDV----PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRA 152 (339)
Q Consensus 77 ~~~~s~I~~~LylGs~p~a~d~----~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~a 152 (339)
-+-.+.+...++.-..|....+ +.|+++||++||+++++ .++.+.++..|++|+++|+.|+ .+|+.+.+.++
T Consensus 8 ~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~---~~~~~~~~~~gi~~~~~p~~D~-~~P~~~~i~~~ 83 (166)
T PTZ00242 8 DRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGP---TYDAELLEKNGIEVHDWPFDDG-APPPKAVIDNW 83 (166)
T ss_pred CcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCC---CCCHHHHHHCCCEEEecCCCCC-CCCCHHHHHHH
Confidence 4456788999999999988544 88899999999999875 3354567789999999999996 68999999999
Q ss_pred HHHHHHHHhC----CCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHh
Q 019549 153 VDFICENALS----RQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRV 220 (339)
Q Consensus 153 v~fI~~~~~~----g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~ 220 (339)
++++++.+.. |++|+|||.+|+|||||++++|| |++++|++++|++||.+. ++.|+++|.+|.+...
T Consensus 84 ~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 84 LRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKK 159 (166)
T ss_pred HHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhc
Confidence 9999988754 89999999999999999999999 899999999999999875 7999999999997543
No 9
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.90 E-value=3.5e-23 Score=197.73 Aligned_cols=145 Identities=26% Similarity=0.324 Sum_probs=130.8
Q ss_pred CcccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHH
Q 019549 79 WWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICE 158 (339)
Q Consensus 79 ~~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~ 158 (339)
..+.|.|++|+|+...+.+.+.++++||++|+|+....+... .....+++|+++|+.|....++..+++++++||+.
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988754321 12223899999999999888899999999999999
Q ss_pred HHhCCCeEEEEcCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhhhccC
Q 019549 159 NALSRQTTYVHCKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMACLY 226 (339)
Q Consensus 159 ~~~~g~~VLVHC~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~~~~~ 226 (339)
+..++++|||||.+|+|||+|+++||| |++++|+++|+++||.+.||.+|+.||.+|++.+.......
T Consensus 151 a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 151 AREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred HHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999 79999999999999999999999999999999987776533
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.89 E-value=1.7e-22 Score=186.65 Aligned_cols=132 Identities=19% Similarity=0.211 Sum_probs=117.2
Q ss_pred cEEEcCCCCCC----ChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHh
Q 019549 86 FLLLGAVPFPT----DVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENAL 161 (339)
Q Consensus 86 ~LylGs~p~a~----d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~ 161 (339)
.+++-..|... .++.|+++||++||+++++ .++.+.++..||+|+++|++|+ .+|..+.++++++++++.+.
T Consensus 93 rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~---~Yd~~~~~~~GI~~~~lpipDg-~aPs~~~i~~~l~~i~~~l~ 168 (241)
T PTZ00393 93 KILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER---TYNDGEITSAGINVHELIFPDG-DAPTVDIVSNWLTIVNNVIK 168 (241)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC---CCCHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHHHHh
Confidence 36677777764 4588999999999999875 4566677889999999999997 79999999999999999988
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhh
Q 019549 162 SRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNM 222 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~ 222 (339)
.|++|+|||.+|+||||+++++|| |++++|+++||++||.+. +..|+++|++|++...++
T Consensus 169 ~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~ 232 (241)
T PTZ00393 169 NNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKK 232 (241)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999 899999999999999985 899999999999876443
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.79 E-value=1.7e-18 Score=155.98 Aligned_cols=117 Identities=26% Similarity=0.392 Sum_probs=107.6
Q ss_pred hHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHH
Q 019549 99 PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRST 178 (339)
Q Consensus 99 ~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSg 178 (339)
..++..+++.++.|+.. .++.+.+...||.++++|+.|+ ..|+.+.+.++++.++.+.+ +++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg-~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADG-STPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCC-CCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 45678999999999876 5677788899999999999997 79999999999999999988 9999999999999999
Q ss_pred HHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHh
Q 019549 179 TVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRV 220 (339)
Q Consensus 179 tvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~ 220 (339)
++++||| |++.||+.++|..||+++.++.|...+.+|...+.
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~ 209 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWL 209 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 9999999 89999999999999999999999999999988643
No 12
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.64 E-value=2.5e-16 Score=138.42 Aligned_cols=108 Identities=30% Similarity=0.437 Sum_probs=75.7
Q ss_pred cCcEEEcCCCC----------CCChhHHHhCCccEEEEcCCCCCCC---CC--cccccccCcEEEEEecCCCCCCCCHHH
Q 019549 84 DEFLLLGAVPF----------PTDVPCLKELGVGGVITLNEPYETL---VP--TSLYHAHCIDHLVIPTRDYCFAPSLGD 148 (339)
Q Consensus 84 ~~~LylGs~p~----------a~d~~~Lk~~GIt~VVnL~~e~e~~---~~--~~~~~~~gI~~l~iPi~D~~~~p~~~~ 148 (339)
...|.+...|- .+|++.|+.+|++.||.+++..|.. .+ .+.++..|+.++++|+.|. ..|..+.
T Consensus 40 ~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~-~aPd~~~ 118 (168)
T PF05706_consen 40 SGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDG-SAPDFAA 118 (168)
T ss_dssp SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TT-S---HHH
T ss_pred cceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCC-CCCCHHH
Confidence 34677777776 2466789999999999999876551 22 2478889999999999997 5778888
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh------cCHHHHH
Q 019549 149 ICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL------MTPDAAY 192 (339)
Q Consensus 149 l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL------ms~~eAl 192 (339)
+.++++.|...+.+|++|+|||..|.||||+|++|+| |++++|+
T Consensus 119 ~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 119 AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 8889999999999999999999999999999999999 7999986
No 13
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.62 E-value=4.5e-15 Score=132.87 Aligned_cols=95 Identities=34% Similarity=0.436 Sum_probs=81.8
Q ss_pred cccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh------cCHHHHHHHHHh
Q 019549 124 LYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL------MTPDAAYDYVRS 197 (339)
Q Consensus 124 ~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL------ms~~eAl~~Vr~ 197 (339)
.....++.++++|+.|+ ..|...++.+++++|+.+.++|++|+|||.+|+|||||+++||| +..++++.+++.
T Consensus 67 ~~~~~~~~~~~~~~~D~-~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDG-TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCC-CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 34457899999999997 79999999999999999999999999999999999999999999 689999999999
Q ss_pred hCCCCcCCHHHHHHHHHHHHHH
Q 019549 198 IRPRVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 198 ~RP~v~pn~~q~~~L~~f~~~~ 219 (339)
+||.......|..+..++...+
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred cCCcccccHHHHHHHHHHHHHH
Confidence 9987566666666665555433
No 14
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.62 E-value=5.5e-16 Score=137.05 Aligned_cols=138 Identities=19% Similarity=0.227 Sum_probs=88.2
Q ss_pred CcccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC---CCCHHHHHHHHHH
Q 019549 79 WWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF---APSLGDICRAVDF 155 (339)
Q Consensus 79 ~~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~---~p~~~~l~~av~f 155 (339)
.+..|.++||.|++|.+.+++.|+++|+++||+|+.+........+.++.||+++++++..... ....+.+.++++.
T Consensus 6 nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ 85 (164)
T PF03162_consen 6 NFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEI 85 (164)
T ss_dssp T-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHH
T ss_pred cccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999876432111235678999999999987522 3467788899988
Q ss_pred HHHHHhCCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHH
Q 019549 156 ICENALSRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 156 I~~~~~~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~ 219 (339)
|.+.. +.||||||.+|..|||++++||- |+..+|++..+.-- ....+..-.++++.|....
T Consensus 86 ild~~--n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~-~~~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 86 ILDPR--NYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFA-GPKIRYLDEQFIELFDVEL 150 (164)
T ss_dssp HH-GG--G-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHH-GGG--HHHHHHHHT-----
T ss_pred HhCCC--CCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhc-CCCCcHHHHHHHHhcCcce
Confidence 76543 67999999999999999999998 99999999998643 2244566667777776544
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.56 E-value=3.5e-14 Score=120.11 Aligned_cols=125 Identities=25% Similarity=0.259 Sum_probs=101.6
Q ss_pred EEcCCCCCC----ChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhC-
Q 019549 88 LLGAVPFPT----DVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALS- 162 (339)
Q Consensus 88 ylGs~p~a~----d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~- 162 (339)
.+-.-|... -++.|+++|+++||.+|++ .|+....+..||.++.+|++|. .+|..+.++..+..+.....+
T Consensus 20 LIThnPtnaTln~fieELkKygvttvVRVCe~---TYdt~~lek~GI~Vldw~f~dg-~ppp~qvv~~w~~l~~~~f~e~ 95 (173)
T KOG2836|consen 20 LITHNPTNATLNKFIEELKKYGVTTVVRVCEP---TYDTTPLEKEGITVLDWPFDDG-APPPNQVVDDWLSLVKTKFREE 95 (173)
T ss_pred EEecCCCchhHHHHHHHHHhcCCeEEEEeccc---ccCCchhhhcCceEeecccccC-CCCchHHHHHHHHHHHHHHhhC
Confidence 444445543 3578999999999999987 5676678889999999999996 677776777777765544433
Q ss_pred -CCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHH
Q 019549 163 -RQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYN 217 (339)
Q Consensus 163 -g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~ 217 (339)
|..|.|||.+|.||.+.+++.-| |..++|++++|++|.+ .+|..|+.+|++|..
T Consensus 96 p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krrg-a~n~kql~~lekyrp 154 (173)
T KOG2836|consen 96 PGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRRG-AINSKQLLYLEKYRP 154 (173)
T ss_pred CCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhhc-cccHHHHHHHHHhCc
Confidence 68999999999999999988888 9999999999999965 678999999988863
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.52 E-value=1.2e-13 Score=118.25 Aligned_cols=115 Identities=15% Similarity=0.092 Sum_probs=92.8
Q ss_pred ccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCC-Ccc-----cccccCcEEEEEecCCCCCCCCHHHHHHHHH
Q 019549 81 DRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLV-PTS-----LYHAHCIDHLVIPTRDYCFAPSLGDICRAVD 154 (339)
Q Consensus 81 s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~-~~~-----~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~ 154 (339)
.+|++.+|+++++...+++.|+++||++|||+..+.|... +.. .....|++|+++|+... .++.+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 5799999999999999999999999999999987655422 211 22457999999999864 456677777777
Q ss_pred HHHHHHhCCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHhhCCC
Q 019549 155 FICENALSRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRSIRPR 201 (339)
Q Consensus 155 fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~~RP~ 201 (339)
+++. ..+|||+||++|. ||+++.+.++ ++.+++++..+..-..
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 7763 3689999999999 9999887776 8999999999876543
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.38 E-value=8.7e-13 Score=109.36 Aligned_cols=98 Identities=21% Similarity=0.271 Sum_probs=67.3
Q ss_pred cccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCC-Cc-----ccccccCcEEEEEecCCCCCCCCHHHHHHHH
Q 019549 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLV-PT-----SLYHAHCIDHLVIPTRDYCFAPSLGDICRAV 153 (339)
Q Consensus 80 ~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~-~~-----~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av 153 (339)
+.+|++.++++++|.+.+++.|++.|+++|||+..+.|... +. ...+..|+.|+++|+... .++.+++..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 35799999999999999999999999999999987765421 11 256789999999999863 67888888888
Q ss_pred HHHHHHHhCCCeEEEEcCCCCChHHHHHHH
Q 019549 154 DFICENALSRQTTYVHCKAGRGRSTTVVIC 183 (339)
Q Consensus 154 ~fI~~~~~~g~~VLVHC~aG~gRSgtvvaa 183 (339)
+.++.. .+|||+||+.|. |++++.++
T Consensus 80 ~~l~~~---~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 80 DALESL---PKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHTT---TTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHhC---CCCEEEECCCCh-hHHHHHHH
Confidence 887764 689999999996 88876554
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.31 E-value=1.8e-11 Score=97.53 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=68.3
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEcCCCCChHHHHHHHHh-----------cCHHHHHHHHHh
Q 019549 132 HLVIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYL-----------MTPDAAYDYVRS 197 (339)
Q Consensus 132 ~l~iPi~D~~~~p~~~~l~~av~fI~~~~~---~g~~VLVHC~aG~gRSgtvvaayL-----------ms~~eAl~~Vr~ 197 (339)
+++.+++|...+...+.+.++++.+++... .+++|+|||.+|.||||+++++|+ .++.+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445566676444455788888888877654 368999999999999999999998 367799999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 019549 198 IRPRVLLASAQWQAVLEY 215 (339)
Q Consensus 198 ~RP~v~pn~~q~~~L~~f 215 (339)
.||....+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999888754
No 19
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.31 E-value=1.8e-11 Score=97.53 Aligned_cols=84 Identities=21% Similarity=0.175 Sum_probs=68.3
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHh---CCCeEEEEcCCCCChHHHHHHHHh-----------cCHHHHHHHHHh
Q 019549 132 HLVIPTRDYCFAPSLGDICRAVDFICENAL---SRQTTYVHCKAGRGRSTTVVICYL-----------MTPDAAYDYVRS 197 (339)
Q Consensus 132 ~l~iPi~D~~~~p~~~~l~~av~fI~~~~~---~g~~VLVHC~aG~gRSgtvvaayL-----------ms~~eAl~~Vr~ 197 (339)
+++.+++|...+...+.+.++++.+++... .+++|+|||.+|.||||+++++|+ .++.+++..+|+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 445566676444455788888888877654 368999999999999999999998 367799999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 019549 198 IRPRVLLASAQWQAVLEY 215 (339)
Q Consensus 198 ~RP~v~pn~~q~~~L~~f 215 (339)
.||....+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999888754
No 20
>PLN02727 NAD kinase
Probab=99.25 E-value=1.6e-11 Score=130.87 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=83.1
Q ss_pred cEEEcCCCCCCChhHHHhCCccEEEEcCCCCCC--CCC---cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Q 019549 86 FLLLGAVPFPTDVPCLKELGVGGVITLNEPYET--LVP---TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENA 160 (339)
Q Consensus 86 ~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~--~~~---~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~ 160 (339)
.+|++++|.+.+++.|.++||++|||+.++.+. ++. .+..+..|++|+++|+.+. .+|+.+++.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~-~apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVR-TAPSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCC-CCCCHHHHHHHHHHHHhh-
Confidence 479999999999999999999999999887662 121 1244568999999999885 689999999999999542
Q ss_pred hCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
..+|||+||+.|.+|+|++++||+
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl 363 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWK 363 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHH
Confidence 278999999999999999999999
No 21
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.12 E-value=3.1e-10 Score=104.40 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=70.5
Q ss_pred cCcEEEEEe-cCCCCCCCCHHHHHHHHHHHHHHHh--CCCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHH
Q 019549 128 HCIDHLVIP-TRDYCFAPSLGDICRAVDFICENAL--SRQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDY 194 (339)
Q Consensus 128 ~gI~~l~iP-i~D~~~~p~~~~l~~av~fI~~~~~--~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~ 194 (339)
..+.++++. ++|...++..+.+.+++..+++... .++||+|||.+|.||||+++++++ +++.+++..
T Consensus 128 ~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 128 RTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred eEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345555544 4565445555778888888877653 468999999999999999999987 699999999
Q ss_pred HHhhCCCCcCCHHHHHHHHH
Q 019549 195 VRSIRPRVLLASAQWQAVLE 214 (339)
Q Consensus 195 Vr~~RP~v~pn~~q~~~L~~ 214 (339)
+|++||.+..+..|+.++..
T Consensus 208 iR~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 208 LRSQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred HHhccccccCCHHHHHHHHH
Confidence 99999999999999999875
No 22
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.08 E-value=5.5e-10 Score=104.65 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=65.8
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhCCCCcC
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIRPRVLL 204 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~RP~v~p 204 (339)
.++|...+.....+.+++..++..... ++||+|||.+|.||||+++++++ +++.+++..+|++||.+..
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 344654444667777888777776543 68999999999999999999987 5999999999999999999
Q ss_pred CHHHHHHHHH
Q 019549 205 ASAQWQAVLE 214 (339)
Q Consensus 205 n~~q~~~L~~ 214 (339)
+..|+.++..
T Consensus 245 ~~~Qy~f~~~ 254 (258)
T smart00194 245 TEEQYIFLYR 254 (258)
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 23
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=1.9e-09 Score=89.71 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=88.3
Q ss_pred cccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCc------ccccccCcEEEEEecCCCCCCCCHHHHHHHH
Q 019549 80 WDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPT------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAV 153 (339)
Q Consensus 80 ~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~------~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av 153 (339)
+.+|.+.+.+++++...|+..++.+|++.|||..+..|....+ ...+..|+.|.++|+... ..+.++++.+.
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~ 80 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQ 80 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHH
Confidence 3579999999999999999999999999999998877653322 255779999999999864 66778888888
Q ss_pred HHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHh
Q 019549 154 DFICENALSRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRS 197 (339)
Q Consensus 154 ~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~ 197 (339)
+.++++ ++|||.||+.| .||.++-..-. |+.++...+=+.
T Consensus 81 ~Al~ea---egPVlayCrsG-tRs~~ly~~~~~~~gm~~de~~a~g~a 124 (130)
T COG3453 81 RALDEA---EGPVLAYCRSG-TRSLNLYGLGELDGGMSRDEIEALGQA 124 (130)
T ss_pred HHHHHh---CCCEEeeecCC-chHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 888876 89999999999 57755432222 888887765443
No 24
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.99 E-value=3.7e-09 Score=97.50 Aligned_cols=119 Identities=19% Similarity=0.226 Sum_probs=92.7
Q ss_pred CcccccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCC---CC----CHHHHHH
Q 019549 79 WWDRVDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCF---AP----SLGDICR 151 (339)
Q Consensus 79 ~~s~I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~---~p----~~~~l~~ 151 (339)
.|+.|.++||.|++|.+.++.+|+.++.+.||.|+++......-.+++.++|++.++.+...-. .| ..+.+..
T Consensus 59 nFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~ 138 (249)
T KOG1572|consen 59 NFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRK 138 (249)
T ss_pred cccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHH
Confidence 3467888999999999999999999999999999998421111237888999999999976421 22 3456677
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHHHHHhhC
Q 019549 152 AVDFICENALSRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYDYVRSIR 199 (339)
Q Consensus 152 av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~~Vr~~R 199 (339)
++.++-+ ..+.|+||||..|..|+|+++.|.- |++...++..++.-
T Consensus 139 ~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa 188 (249)
T KOG1572|consen 139 ALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFA 188 (249)
T ss_pred HHHHHhc--ccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhc
Confidence 7777544 3478999999999999999999987 77777777665443
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.91 E-value=8.2e-09 Score=104.60 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=69.2
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHHHhCC---------CeEEEEcCCCCChHHHHHHHHh------cCHHHHHHHHHhhC
Q 019549 135 IPTRDYCFAPSLGDICRAVDFICENALSR---------QTTYVHCKAGRGRSTTVVICYL------MTPDAAYDYVRSIR 199 (339)
Q Consensus 135 iPi~D~~~~p~~~~l~~av~fI~~~~~~g---------~~VLVHC~aG~gRSgtvvaayL------ms~~eAl~~Vr~~R 199 (339)
..++|+..++....+.++++.++.....+ ...+|||.+|+|||||++++++ .++++.+..+|..|
T Consensus 429 TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qR 508 (535)
T PRK15375 429 KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSR 508 (535)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcC
Confidence 34578766666667888887777653221 2247999999999999999999 48999999999999
Q ss_pred CC-CcCCHHHHHHHHHHHHHHh
Q 019549 200 PR-VLLASAQWQAVLEYYNLRV 220 (339)
Q Consensus 200 P~-v~pn~~q~~~L~~f~~~~~ 220 (339)
++ ++.+++|+.+|.+....+.
T Consensus 509 ng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 509 NNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred CccccccHHHHHHHHHHHHHHh
Confidence 98 9999999999998876654
No 26
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.89 E-value=1.3e-08 Score=98.32 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=66.0
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh------------CCCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHH
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENAL------------SRQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYD 193 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~~------------~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~ 193 (339)
.++|+..+.....|-+++..+++... ..+||+|||.+|+||||++++... .++.+++.
T Consensus 190 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~ 269 (303)
T PHA02742 190 DWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVR 269 (303)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 44576556566777777766665321 137999999999999999999887 58899999
Q ss_pred HHHhhCCCCcCCHHHHHHHHHHHHHH
Q 019549 194 YVRSIRPRVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 194 ~Vr~~RP~v~pn~~q~~~L~~f~~~~ 219 (339)
.+|++|+.++.+..|+.++.+--..+
T Consensus 270 ~lR~qR~~~Vqt~~QY~F~y~~l~~y 295 (303)
T PHA02742 270 DLRKQRHNCLSLPQQYIFCYFIVLIF 295 (303)
T ss_pred HHHhhcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999887544433
No 27
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.88 E-value=3.6e-09 Score=92.96 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=57.8
Q ss_pred ccC-cEEEcCCCCC---CChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCC---C----------
Q 019549 83 VDE-FLLLGAVPFP---TDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAP---S---------- 145 (339)
Q Consensus 83 I~~-~LylGs~p~a---~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p---~---------- 145 (339)
|.+ .||.++.+.. ++.+.|+++||++||||..+.|....+... ..|++++++|+.+..... .
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~-~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPL-IDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCC-cCCceeeeecccccccccccccccccccccch
Confidence 444 4999998875 577889999999999998876542111112 248999999998753221 0
Q ss_pred ---------------HHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh----cCHHHHHH
Q 019549 146 ---------------LGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL----MTPDAAYD 193 (339)
Q Consensus 146 ---------------~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL----ms~~eAl~ 193 (339)
.+.+.++++.|.+ ..++||+||.+|+.|||.+++..| ++.++.++
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~---~~~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLAD---APGPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH----TT--EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcc---CCCcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHH
Confidence 0122223333322 347999999999999999999988 45555443
No 28
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.88 E-value=6.5e-09 Score=104.64 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=104.9
Q ss_pred CcccccCcEEEcCCCCCCChh-----------HHHh--CCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCC
Q 019549 79 WWDRVDEFLLLGAVPFPTDVP-----------CLKE--LGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPS 145 (339)
Q Consensus 79 ~~s~I~~~LylGs~p~a~d~~-----------~Lk~--~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~ 145 (339)
..+-|++.|...++|...... .|.. .|=-.|.||+. |..++...+. -++..++++|+ .+|.
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~--er~yd~~~f~---g~V~~~~~~Dh-~~P~ 87 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSS--ERLYDPSRFH---GRVARFGFDDH-NPPP 87 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCc--cccCCccccc---cceeecCCCCC-CCCc
Confidence 347799999999999764322 2222 12234788886 3344433222 24556999997 7999
Q ss_pred HHHHHHHHHHHHHHHhC--CCeEEEEcCCCCChHHHHHHHHh------cCHHHHHHHHHhhC---C--CCcCCHHHHHHH
Q 019549 146 LGDICRAVDFICENALS--RQTTYVHCKAGRGRSTTVVICYL------MTPDAAYDYVRSIR---P--RVLLASAQWQAV 212 (339)
Q Consensus 146 ~~~l~~av~fI~~~~~~--g~~VLVHC~aG~gRSgtvvaayL------ms~~eAl~~Vr~~R---P--~v~pn~~q~~~L 212 (339)
++.+..+++-++.++.+ ..-|.|||++|++|||++++||| -++++|+.++-.+| . .....+.|.+++
T Consensus 88 L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv 167 (434)
T KOG2283|consen 88 LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYV 167 (434)
T ss_pred HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHH
Confidence 99999999999999876 46799999999999999999999 48999999999999 3 245678999999
Q ss_pred HHHHHHHh
Q 019549 213 LEYYNLRV 220 (339)
Q Consensus 213 ~~f~~~~~ 220 (339)
..|+..+.
T Consensus 168 ~Y~~~~l~ 175 (434)
T KOG2283|consen 168 GYFSRVLL 175 (434)
T ss_pred HHHHHHhh
Confidence 99999643
No 29
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.88 E-value=1.7e-08 Score=97.41 Aligned_cols=82 Identities=10% Similarity=0.032 Sum_probs=64.3
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHH---------hCCCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHH
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENA---------LSRQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVR 196 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~---------~~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr 196 (339)
.++|++.+.....|-+++..+++.. ...+||+|||.+|+||||++++... .++.+++..+|
T Consensus 185 ~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR 264 (298)
T PHA02740 185 AWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVR 264 (298)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4456655556666666665555421 1247999999999999999999887 59999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHH
Q 019549 197 SIRPRVLLASAQWQAVLEYYN 217 (339)
Q Consensus 197 ~~RP~v~pn~~q~~~L~~f~~ 217 (339)
++|+.++.+.+|+.++.+--.
T Consensus 265 ~qR~~~Vqt~~QY~F~y~~l~ 285 (298)
T PHA02740 265 QKKYGCMNCLDDYVFCYHLIA 285 (298)
T ss_pred hhCccccCCHHHHHHHHHHHH
Confidence 999999999999999876443
No 30
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.85 E-value=2e-08 Score=97.46 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=64.8
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh-----------CCCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHH
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENAL-----------SRQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDY 194 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~~-----------~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~ 194 (339)
.++|+..+.....|.+++..++...+ ..+||+|||.+|+||||++++..+ .++.+++..
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 44566445556666666666654322 126999999999999999999986 699999999
Q ss_pred HHhhCCCCcCCHHHHHHH---HHHHHHH
Q 019549 195 VRSIRPRVLLASAQWQAV---LEYYNLR 219 (339)
Q Consensus 195 Vr~~RP~v~pn~~q~~~L---~~f~~~~ 219 (339)
+|++|+.++.+..|+.++ .+.-..+
T Consensus 271 lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred HHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5544333
No 31
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.80 E-value=3.3e-08 Score=96.43 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=65.6
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh-------C----CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHH
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENAL-------S----RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDY 194 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~~-------~----g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~ 194 (339)
.++|+..+.....|-+++..+++... . .+||+|||.+|+||||++++... .++.+++..
T Consensus 209 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~ 288 (323)
T PHA02746 209 DWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLK 288 (323)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 34566555556677777666665421 1 27999999999999999999876 699999999
Q ss_pred HHhhCCCCcCCHHHHHHHHHHHHHH
Q 019549 195 VRSIRPRVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 195 Vr~~RP~v~pn~~q~~~L~~f~~~~ 219 (339)
+|++|+.++.+..|+.++.+--...
T Consensus 289 lR~qR~~~Vqt~~QY~F~y~~l~~~ 313 (323)
T PHA02746 289 IRKQRHSSVFLPEQYAFCYKALKYA 313 (323)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988654433
No 32
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.80 E-value=3.8e-08 Score=89.44 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHH-hCCCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhCCCCcC
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENA-LSRQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIRPRVLL 204 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~-~~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~RP~v~p 204 (339)
.+.|...++....+.++++.+.+.. ...+||+|||..|.||||+++++.+ .++.+++..+|++||++..
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~ 221 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQ 221 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSS
T ss_pred eccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccC
Confidence 4445433445667777777777665 3468999999999999999999998 5999999999999999999
Q ss_pred CHHHHHHHHHH
Q 019549 205 ASAQWQAVLEY 215 (339)
Q Consensus 205 n~~q~~~L~~f 215 (339)
+..|+.++...
T Consensus 222 ~~~qy~f~~~~ 232 (235)
T PF00102_consen 222 SPEQYRFCYMA 232 (235)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998764
No 33
>PHA02738 hypothetical protein; Provisional
Probab=98.76 E-value=5.4e-08 Score=94.75 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=65.1
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHh--------------CCCeEEEEcCCCCChHHHHHHHHh----------cCHHHH
Q 019549 136 PTRDYCFAPSLGDICRAVDFICENAL--------------SRQTTYVHCKAGRGRSTTVVICYL----------MTPDAA 191 (339)
Q Consensus 136 Pi~D~~~~p~~~~l~~av~fI~~~~~--------------~g~~VLVHC~aG~gRSgtvvaayL----------ms~~eA 191 (339)
.++|+..+.....|-+++..+++... ..+||+|||.+|+||||++++..+ .++.++
T Consensus 186 ~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~ 265 (320)
T PHA02738 186 AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSI 265 (320)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHH
Confidence 44566555566667666666654321 136999999999999999999887 599999
Q ss_pred HHHHHhhCCCCcCCHHHHHHHHHHHHHH
Q 019549 192 YDYVRSIRPRVLLASAQWQAVLEYYNLR 219 (339)
Q Consensus 192 l~~Vr~~RP~v~pn~~q~~~L~~f~~~~ 219 (339)
+..+|++|+.++.+..|+.++.+--..+
T Consensus 266 V~~lR~qR~~~vqt~~QY~F~y~~l~~y 293 (320)
T PHA02738 266 VSSIRNQRYYSLFIPFQYFFCYRAVKRY 293 (320)
T ss_pred HHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998887544433
No 34
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.69 E-value=4.5e-08 Score=96.81 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=101.6
Q ss_pred CChhHHHh--CCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEE
Q 019549 96 TDVPCLKE--LGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENAL----SRQTTYVH 169 (339)
Q Consensus 96 ~d~~~Lk~--~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~----~g~~VLVH 169 (339)
..+..|++ .-|.-+||++.... .++...+...|+.|+.+.+..+...|..+....++..+++... .++-|+||
T Consensus 52 dl~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vh 130 (393)
T KOG2386|consen 52 DLFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVH 130 (393)
T ss_pred HHHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEe
Confidence 34455554 66788999987643 4566688889999999999988778887777776666655543 47899999
Q ss_pred cCCCCChHHHHHHHHh-----cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHh
Q 019549 170 CKAGRGRSTTVVICYL-----MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRV 220 (339)
Q Consensus 170 C~aG~gRSgtvvaayL-----ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~ 220 (339)
|.+|++|+|.++++|| |+..+|++.+...||........+..|...+....
T Consensus 131 cthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~~ 186 (393)
T KOG2386|consen 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIF 186 (393)
T ss_pred CCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccccc
Confidence 9999999999999999 79999999999999999999999999988876544
No 35
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.61 E-value=8.9e-08 Score=95.04 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=79.9
Q ss_pred ChhHHHhCCccEEEEcCCCCCCCCC------ccccc----ccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHH---HhCC
Q 019549 97 DVPCLKELGVGGVITLNEPYETLVP------TSLYH----AHCIDHLVIPTRDYCFAPSLGDICRAVDFICEN---ALSR 163 (339)
Q Consensus 97 d~~~Lk~~GIt~VVnL~~e~e~~~~------~~~~~----~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~---~~~g 163 (339)
+...++.+|+-.|=|+.+.....|- ...++ ..=.+|+.+-++|+..+...--+..+++-++.- +..-
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 5567788999888888653211110 00011 111345556666775444444455555544432 2224
Q ss_pred CeEEEEcCCCCChHHHHHHHHh-------------cCHHHHHHHHHhhCCCCcCCHHHHHHHHH
Q 019549 164 QTTYVHCKAGRGRSTTVVICYL-------------MTPDAAYDYVRSIRPRVLLASAQWQAVLE 214 (339)
Q Consensus 164 ~~VLVHC~aG~gRSgtvvaayL-------------ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~ 214 (339)
+||.|||.+|+|||||+++.-+ |++...+++||++|.+++.++.|+++++.
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYV 515 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHH
Confidence 7999999999999999877665 79999999999999999999999998864
No 36
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.61 E-value=2e-07 Score=80.93 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=77.5
Q ss_pred hHHHhCCccEEEEcCCCCCC-CCCccccccc--CcEEEEEecCCC-CCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCC
Q 019549 99 PCLKELGVGGVITLNEPYET-LVPTSLYHAH--CIDHLVIPTRDY-CFAPSLGDICRAVDFICENALSRQTTYVHCKAGR 174 (339)
Q Consensus 99 ~~Lk~~GIt~VVnL~~e~e~-~~~~~~~~~~--gI~~l~iPi~D~-~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~ 174 (339)
+.....|-+++|++...... ..+.....+. .+.+-.+-..|. +..|...++..+++|++++ .+..++||||.+|+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~w-p~~apllIHC~aGI 104 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEW-PRFAPLLIHCYAGI 104 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcC-ccccceeeeecccc
Confidence 34446889999999775322 2222211111 122222333332 3678899999999999998 45689999999999
Q ss_pred ChHHHHHHH---Hh---cCHHHHHHHHHhhCCCCcCCHHHHH
Q 019549 175 GRSTTVVIC---YL---MTPDAAYDYVRSIRPRVLLASAQWQ 210 (339)
Q Consensus 175 gRSgtvvaa---yL---ms~~eAl~~Vr~~RP~v~pn~~q~~ 210 (339)
|||.+++.. -| |+..+..+.+|..+|.+.||+..+.
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 999875544 23 9999999999999999999985443
No 37
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.51 E-value=4.2e-07 Score=97.90 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=72.9
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhCCCCc
Q 019549 135 IPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIRPRVL 203 (339)
Q Consensus 135 iPi~D~~~~p~~~~l~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~RP~v~ 203 (339)
+.++|++.+.+..+|-++++.|...+.. +.||+|||.+|+||||+++..-+ .++-+.+..+|.+|-.++
T Consensus 1034 taWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mV 1113 (1144)
T KOG0792|consen 1034 TAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMV 1113 (1144)
T ss_pred cccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhc
Confidence 4566777788888898888888888766 67999999999999999887655 699999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhh
Q 019549 204 LASAQWQAVLEYYNLRVNM 222 (339)
Q Consensus 204 pn~~q~~~L~~f~~~~~~~ 222 (339)
++..|+.|+.+---...++
T Consensus 1114 QT~~QYkFVyevil~~l~~ 1132 (1144)
T KOG0792|consen 1114 QTLSQYKFVYEVILRVLKR 1132 (1144)
T ss_pred cchHHhhHHHHHHHHHHHh
Confidence 9999999987654333333
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.51 E-value=1.5e-07 Score=81.90 Aligned_cols=62 Identities=31% Similarity=0.435 Sum_probs=48.5
Q ss_pred cccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 122 TSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 122 ~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
....+..|+.|+++|+.|+ ..|..+.|+++++|+... ..+..+.+||.+|.|||.|..+.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~-~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~ 146 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDH-QAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYD 146 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TT-S---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCc-CCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456679999999999997 799999999999999988 7788999999999999999988874
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.49 E-value=1.9e-07 Score=87.66 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=107.2
Q ss_pred cCcccchhhccccCccccccccCccceeeh----hHHHHHHHH--HHHHHhhhhhHHHHHhhhcccccCcccccCcEEEc
Q 019549 17 NGEEESSEYCDQNDSVSDVSEIGKSFVVSD----VKRVLIGAG--ARALFYPTLLYNVVRNKFQAEFRWWDRVDEFLLLG 90 (339)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~k~~l~~~~--a~~l~~P~ll~~~~~~~l~~~~~~~s~I~~~LylG 90 (339)
...|+|+-|++-.++. =++.+|+..-. ||..+.... .-+..+- -++-.-+++. ...|...+.+.+.+|
T Consensus 78 ~~DYINAS~ik~~~~~---yIAtQgP~~~t~ddFW~mvw~n~~~~gvIVmLt-~l~E~~rekc--~qYWp~~~~~~~~~G 151 (302)
T COG5599 78 INDYINASYIKTPRGK---YIATQGPKPETIDDFWKMVWHNVPNNGVIVMLT-SLPEYNREKC--DQYWPLGYDDTLIIG 151 (302)
T ss_pred hhhcccceeeecCCCc---eEEecCCCCchHHHHHHHHHhcCCCceEEEEec-ChHHHhHHHH--hhhCCCCcCcceeee
Confidence 4578899999888866 57777775533 333333221 0000000 0111112222 445667788888888
Q ss_pred CCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEE-ecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEE
Q 019549 91 AVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVI-PTRDYCFAPSLGDICRAVDFICENALSRQTTYVH 169 (339)
Q Consensus 91 s~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~i-Pi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVH 169 (339)
..-...--.. .-...++++. .++...... ....|.|+++ -+.|. ..|....+.+...-+...--+.+|++||
T Consensus 152 ~~v~~~~~~e---~~~d~~~~~~-~f~L~~~~~--~~k~Ihhf~y~nW~D~-~~p~i~sl~~~~~sl~~sp~~t~piiVH 224 (302)
T COG5599 152 LRVIKQKKYE---LFNDNIVNVH-NFELTSING--PPKKIHHFQYINWVDF-NVPDIRSLTEVIHSLNDSPVRTGPIIVH 224 (302)
T ss_pred eEEEEEeccc---ccccceeeee-ecccccCCC--CccEEEEEEecCcccc-CCcCHHHHHHHHHHhhcCcCCCCCEEEE
Confidence 3322211011 1122334422 122111100 0112333333 33465 4564444444444443221246899999
Q ss_pred cCCCCChHHHHHHHHh---c----------------CHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhhh
Q 019549 170 CKAGRGRSTTVVICYL---M----------------TPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNMA 223 (339)
Q Consensus 170 C~aG~gRSgtvvaayL---m----------------s~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~~ 223 (339)
|.||+|||||+++... | ...+.+..+|++|-.++.|..|..+|+.-...+.+.+
T Consensus 225 CSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~~q 297 (302)
T COG5599 225 CSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNKSQ 297 (302)
T ss_pred eccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999886 1 2355677789999999999999999998877776333
No 40
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.24 E-value=2.8e-06 Score=80.00 Aligned_cols=124 Identities=17% Similarity=0.180 Sum_probs=74.3
Q ss_pred cccccCcEEEcCCCCCCChh--HHHhCCccEEEEcCC--CCCC-CCCccc---ccccCcEEEEEecCCCCCCCCHHHHHH
Q 019549 80 WDRVDEFLLLGAVPFPTDVP--CLKELGVGGVITLNE--PYET-LVPTSL---YHAHCIDHLVIPTRDYCFAPSLGDICR 151 (339)
Q Consensus 80 ~s~I~~~LylGs~p~a~d~~--~Lk~~GIt~VVnL~~--e~e~-~~~~~~---~~~~gI~~l~iPi~D~~~~p~~~~l~~ 151 (339)
...+....|+++.|.+.+.. ....+++..++++.. +... .+.... ....++....++.... .....+.+.+
T Consensus 48 ~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~ 126 (249)
T COG2365 48 LGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPT-REDAAERLVE 126 (249)
T ss_pred ccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCcc-chhhHHHHHH
Confidence 35556678999999997776 677799999999986 2111 111111 0112222222222221 2333444444
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh----c-CHHHHHHHHHhhCCCCcCCH
Q 019549 152 AVDFICENALSRQTTYVHCKAGRGRSTTVVICYL----M-TPDAAYDYVRSIRPRVLLAS 206 (339)
Q Consensus 152 av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL----m-s~~eAl~~Vr~~RP~v~pn~ 206 (339)
.+.++.+. +++|||+||.+|..|||.++++|+ + ....+-++++..++......
T Consensus 127 ~~~l~~~~--e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 127 LLQLLADA--ENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHHhhc--ccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 44443332 249999999999999999999999 3 34456666666666544443
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.17 E-value=1e-05 Score=79.09 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=69.4
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhC
Q 019549 131 DHLVIPTRDYCFAPSLGDICRAVDFICENALS-RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIR 199 (339)
Q Consensus 131 ~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~-g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~R 199 (339)
+++...++|+..+.....+.+++....+.... .++++|||.+|+|||||+++.-- .+.-..+..+|+.|
T Consensus 254 ~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R 333 (374)
T KOG0791|consen 254 HFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSAR 333 (374)
T ss_pred EEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcc
Confidence 34455666764443445566666655555443 58999999999999999999875 47778888899999
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhhh
Q 019549 200 PRVLLASAQWQAVLEYYNLRVNMA 223 (339)
Q Consensus 200 P~v~pn~~q~~~L~~f~~~~~~~~ 223 (339)
+.+++|..|+-+|.+--......+
T Consensus 334 ~~mVqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 334 MLMVQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred ccccchHHHHHHHHHHHHHHHhCC
Confidence 999999999999987665544444
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.05 E-value=2e-05 Score=78.30 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHh-----------cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHhhh
Q 019549 162 SRQTTYVHCKAGRGRSTTVVICYL-----------MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRVNM 222 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvvaayL-----------ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~~~ 222 (339)
..+|+.|||.+|+|||||+++... .+..+.+..+|.+|+.++.+..|+.++..-...+...
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~ 369 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKK 369 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 458999999999999999998663 3688899999999999999999998887655554443
No 43
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.95 E-value=2.9e-05 Score=80.93 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=65.1
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHHHh-CCCeEEEEcCCCCChHHHHHHHHh-----------cCHHHHHHHHHhh
Q 019549 131 DHLVIPTRDYCFAPSLGDICRAVDFICENAL-SRQTTYVHCKAGRGRSTTVVICYL-----------MTPDAAYDYVRSI 198 (339)
Q Consensus 131 ~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~-~g~~VLVHC~aG~gRSgtvvaayL-----------ms~~eAl~~Vr~~ 198 (339)
+++.+.+.+...+-+...+-++-.-+++..+ +..+|+|||..|.||||+.++.-+ ++....++++|.+
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 3444555565555556666666666666543 247999999999999999887776 5899999999999
Q ss_pred CCCCcCCHHHHHHHHHH
Q 019549 199 RPRVLLASAQWQAVLEY 215 (339)
Q Consensus 199 RP~v~pn~~q~~~L~~f 215 (339)
||+++-+.+|.++...-
T Consensus 974 R~GmVaTkdQFef~l~a 990 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFALTA 990 (1004)
T ss_pred CCcceeehhhhHHHHHH
Confidence 99999999999887643
No 44
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.66 E-value=0.00036 Score=71.02 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=93.6
Q ss_pred cccCcEEEcCCCCCCCh----hHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCC--CCCCHHHHHHHHHH
Q 019549 82 RVDEFLLLGAVPFPTDV----PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYC--FAPSLGDICRAVDF 155 (339)
Q Consensus 82 ~I~~~LylGs~p~a~d~----~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~--~~p~~~~l~~av~f 155 (339)
.++.+||+|.....-.. ..-....+..||++.+..... .. ......++++|+...- .-.+...+.+++.|
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~---~~-~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~f 366 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK---ES-WPKSPKYLHLPIPSSKKGSRDLRKALPKICSF 366 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc---cc-cCCCceEEeCcCCCCcccHHHHHHHHHHHHHH
Confidence 34679999998873211 111235678899997653211 11 1345678899998642 12346788899999
Q ss_pred HHHHHhC--CCeEEEEcCCCCChHHHHHHHHh---------------------cCHHHHHHHHHhhCCCCcCCHHHHHHH
Q 019549 156 ICENALS--RQTTYVHCKAGRGRSTTVVICYL---------------------MTPDAAYDYVRSIRPRVLLASAQWQAV 212 (339)
Q Consensus 156 I~~~~~~--g~~VLVHC~aG~gRSgtvvaayL---------------------ms~~eAl~~Vr~~RP~v~pn~~q~~~L 212 (339)
+...+.+ +++|||||..|...|+.++.|.| ....+-+.++.+.+|.+.|+...++++
T Consensus 367 v~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsV 446 (451)
T PF04179_consen 367 VRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSV 446 (451)
T ss_pred HHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9999888 89999999999999999998888 134566777778888888888888887
Q ss_pred HHH
Q 019549 213 LEY 215 (339)
Q Consensus 213 ~~f 215 (339)
..|
T Consensus 447 NsF 449 (451)
T PF04179_consen 447 NSF 449 (451)
T ss_pred HHh
Confidence 766
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.40 E-value=0.00021 Score=78.13 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=62.1
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHhC--CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhC
Q 019549 132 HLVIPTRDYCFAPSLGDICRAVDFICENALS--RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIR 199 (339)
Q Consensus 132 ~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~--g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~R 199 (339)
|..+|..+. .+.....+..+........+. .+|+.|||..|.||||+++++-+ ++.-++++.+|..|
T Consensus 986 ~~~WP~~~~-~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~r 1064 (1087)
T KOG4228|consen 986 FTGWPEYGK-PPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQR 1064 (1087)
T ss_pred ecCCcccCc-CCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcC
Confidence 334454442 233333333333333333322 58999999999999999999887 69999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHH
Q 019549 200 PRVLLASAQWQAVLEYYNL 218 (339)
Q Consensus 200 P~v~pn~~q~~~L~~f~~~ 218 (339)
|.++.+.+|++++++-...
T Consensus 1065 p~mv~t~~QY~fcYdv~~~ 1083 (1087)
T KOG4228|consen 1065 PGMVDTSDQYQFCYDVALE 1083 (1087)
T ss_pred ccccCcHHHHHHHHHHHHH
Confidence 9999999999999865543
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.21 E-value=0.00026 Score=77.42 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=54.3
Q ss_pred EecCCCCCCCCHHHHHHHHHHHHHHHhC----CCeEEEEcCCCCChHHHHHHHHh----------cCHHHHHHHHHhhCC
Q 019549 135 IPTRDYCFAPSLGDICRAVDFICENALS----RQTTYVHCKAGRGRSTTVVICYL----------MTPDAAYDYVRSIRP 200 (339)
Q Consensus 135 iPi~D~~~~p~~~~l~~av~fI~~~~~~----g~~VLVHC~aG~gRSgtvvaayL----------ms~~eAl~~Vr~~RP 200 (339)
..++|+..+.... ..+.|+++...- .+|++|||.+|.||||++++.-- .+...-+..+|.+|+
T Consensus 701 t~Wpd~gvPe~~t---~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~ 777 (1087)
T KOG4228|consen 701 TAWPDHGVPETPT---GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRN 777 (1087)
T ss_pred ccCCCCCCcccch---HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccc
Confidence 3456664333333 344555444332 48999999999999999665443 477778889999999
Q ss_pred CCcCCHHHHHHHH
Q 019549 201 RVLLASAQWQAVL 213 (339)
Q Consensus 201 ~v~pn~~q~~~L~ 213 (339)
.++.+.+|+-++.
T Consensus 778 ~mVQt~eQYiFi~ 790 (1087)
T KOG4228|consen 778 NMVQTEEQYIFIH 790 (1087)
T ss_pred cccccHHHHHHHH
Confidence 9999999988774
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.93 E-value=0.31 Score=42.24 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=41.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhC---CCeEEEEcCCCCCh----HHHHHHHHh-----cCHHHHHHHHHhhCCC
Q 019549 138 RDYCFAPSLGDICRAVDFICENALS---RQTTYVHCKAGRGR----STTVVICYL-----MTPDAAYDYVRSIRPR 201 (339)
Q Consensus 138 ~D~~~~p~~~~l~~av~fI~~~~~~---g~~VLVHC~aG~gR----SgtvvaayL-----ms~~eAl~~Vr~~RP~ 201 (339)
.|+ .+..+.++-+++..+++.++. .++.+|||...-.+ ++.+++||+ |++++|++.+...-|.
T Consensus 39 ~DF-GPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~ 113 (141)
T PF14671_consen 39 ADF-GPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPP 113 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT--
T ss_pred CcC-CCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 465 688899999999999888876 57888998876443 577777777 8999999999877643
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.12 E-value=3 Score=43.93 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHH
Q 019549 151 RAVDFICENALSRQTTYVHCKAGRGRSTTVVICY 184 (339)
Q Consensus 151 ~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaay 184 (339)
-++...++.-..+.+|||||.-|=.||+-+++.-
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHHHH
Confidence 3444445555568999999999999999776644
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=84.07 E-value=2.1 Score=36.37 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.2
Q ss_pred hCCCeEEEEcCCCCChHHHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVI 182 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvva 182 (339)
..+++|+|||..| .||...+.
T Consensus 79 ~~~~~IivyC~sG-~RS~~Aa~ 99 (136)
T PLN02160 79 NPADDILVGCQSG-ARSLKATT 99 (136)
T ss_pred CCCCcEEEECCCc-HHHHHHHH
Confidence 4578999999999 68876543
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=78.47 E-value=11 Score=29.68 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=14.9
Q ss_pred hCCCeEEEEcCCCCChHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtv 180 (339)
..+++|+|+|..| .||...
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH
Confidence 4578999999988 677653
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=77.70 E-value=4.7 Score=40.05 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=18.9
Q ss_pred hCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
.+|..|||||..|-.||+-++..-.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~q 253 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQ 253 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHH
Confidence 4689999999999999977766443
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=76.27 E-value=7.5 Score=30.51 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHhCCccEEEEcCCCCCCCCCcccccccCcE-EEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHH
Q 019549 101 LKELGVGGVITLNEPYETLVPTSLYHAHCID-HLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 101 Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~-~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgt 179 (339)
+...+-..+|++.++.+. .. .+-.. ..++|+.+.... ..... ....++++|+|++|. ||..
T Consensus 15 ~~~~~~~~liDvR~~~e~--~~----~~i~~~~~~ip~~~~~~~--~~~~~---------~~~~~~ivv~C~~G~-rS~~ 76 (110)
T COG0607 15 LLAGEDAVLLDVREPEEY--ER----GHIPGAAINIPLSELKAA--ENLLE---------LPDDDPIVVYCASGV-RSAA 76 (110)
T ss_pred hhccCCCEEEeccChhHh--hh----cCCCcceeeeecccchhh--hcccc---------cCCCCeEEEEeCCCC-ChHH
Confidence 334556689999876332 10 01122 556777664211 00000 456799999999994 6755
Q ss_pred HHHHH
Q 019549 180 VVICY 184 (339)
Q Consensus 180 vvaay 184 (339)
.+...
T Consensus 77 aa~~L 81 (110)
T COG0607 77 AAAAL 81 (110)
T ss_pred HHHHH
Confidence 44433
No 53
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=72.77 E-value=6.5 Score=41.41 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHHHHHHHHh-CCCeEEEEcCCCCChHHHHHHHH
Q 019549 151 RAVDFICENAL-SRQTTYVHCKAGRGRSTTVVICY 184 (339)
Q Consensus 151 ~av~fI~~~~~-~g~~VLVHC~aG~gRSgtvvaay 184 (339)
++..+|.+++. +|-+|||||.-|-.||.-|+..-
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLa 365 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLA 365 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHHH
Confidence 33445555555 46899999999999998877654
No 54
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=70.83 E-value=12 Score=30.36 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=16.6
Q ss_pred hCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 161 LSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
..+.+|+|+|..| +++++.++..|
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l 100 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTL 100 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHH
Confidence 4578999999998 45555444444
No 55
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=65.06 E-value=15 Score=35.85 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=52.1
Q ss_pred ccCcEEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHh-
Q 019549 83 VDEFLLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENAL- 161 (339)
Q Consensus 83 I~~~LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~- 161 (339)
|.|.-.+|....+.++..+-.-.=+-|||..+.+|.. +..-.+-..|..+.|.++..++.+...
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~---------------iG~F~gAv~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVA---------------IGHFEGAVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEe---------------eeeecCccCCChhhhhhhHHHHHHHHHh
Confidence 6666666776667676665554447788887766531 111122356777888888888877654
Q ss_pred -CCCeEEEEcCCCC
Q 019549 162 -SRQTTYVHCKAGR 174 (339)
Q Consensus 162 -~g~~VLVHC~aG~ 174 (339)
.+++|+..|+.|+
T Consensus 170 ~~~KkVvmyCTGGI 183 (308)
T COG1054 170 LKDKKVVMYCTGGI 183 (308)
T ss_pred ccCCcEEEEcCCce
Confidence 3789999999996
No 56
>PRK01415 hypothetical protein; Validated
Probab=64.28 E-value=15 Score=34.70 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=14.5
Q ss_pred hCCCeEEEEcCCCCChHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtv 180 (339)
..+++|+++|++| .||...
T Consensus 169 ~k~k~Iv~yCtgG-iRs~kA 187 (247)
T PRK01415 169 LKGKKIAMVCTGG-IRCEKS 187 (247)
T ss_pred cCCCeEEEECCCC-hHHHHH
Confidence 4578999999988 577543
No 57
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=54.97 E-value=13 Score=29.00 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=15.0
Q ss_pred hCCCeEEEEcCCCCChHHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvv 181 (339)
..+++|+|+|..| .||..++
T Consensus 59 ~~~~~ivv~C~~G-~rs~~aa 78 (100)
T cd01523 59 PDDQEVTVICAKE-GSSQFVA 78 (100)
T ss_pred CCCCeEEEEcCCC-CcHHHHH
Confidence 4578999999998 4775543
No 58
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=53.42 E-value=27 Score=27.74 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.2
Q ss_pred CCCeEEEEcCCCCChHHH
Q 019549 162 SRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgt 179 (339)
.+.+|+|||..|. ||..
T Consensus 65 ~~~~ivv~C~~G~-rs~~ 81 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII 81 (109)
T ss_pred CCCeEEEECCCCc-hHHH
Confidence 3579999999985 7744
No 59
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.03 E-value=14 Score=34.81 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=52.1
Q ss_pred cEEEcCC-CCCCChhHHHhCCccEEEEcCCCCCCCCC---cccccccCcEEEEEecCCCCC-----CCCHHHHHHHHHHH
Q 019549 86 FLLLGAV-PFPTDVPCLKELGVGGVITLNEPYETLVP---TSLYHAHCIDHLVIPTRDYCF-----APSLGDICRAVDFI 156 (339)
Q Consensus 86 ~LylGs~-p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~---~~~~~~~gI~~l~iPi~D~~~-----~p~~~~l~~av~fI 156 (339)
.+..|++ ....-.+.+++++|+.|||.+.|+-.... ....+..||.|+++.=+.... .-..+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5788988 44455577889999999999998643221 125567899998875443211 11245667777766
Q ss_pred HHHHhCCCeEEEE
Q 019549 157 CENALSRQTTYVH 169 (339)
Q Consensus 157 ~~~~~~g~~VLVH 169 (339)
.+. .+++||.-
T Consensus 126 ~~~--~~~~iflt 136 (249)
T PF02571_consen 126 KEL--GGGRIFLT 136 (249)
T ss_pred hhc--CCCCEEEe
Confidence 443 22666653
No 60
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=52.16 E-value=25 Score=34.35 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=15.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHh
Q 019549 162 SRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
.+++|+|+|..| .||.. ++.||
T Consensus 170 kdk~IvvyC~~G-~Rs~~-aa~~L 191 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCEK-ASAWM 191 (314)
T ss_pred CcCeEEEECCCC-cHHHH-HHHHH
Confidence 468999999988 57754 34444
No 61
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=47.02 E-value=13 Score=35.17 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=50.2
Q ss_pred cEEEcCC-CCCCChhHHHhCCccEEEEcCCCCCCCCC---cccccccCcEEEEEecCCCC-----CCCCHHHHHHHHHHH
Q 019549 86 FLLLGAV-PFPTDVPCLKELGVGGVITLNEPYETLVP---TSLYHAHCIDHLVIPTRDYC-----FAPSLGDICRAVDFI 156 (339)
Q Consensus 86 ~LylGs~-p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~---~~~~~~~gI~~l~iPi~D~~-----~~p~~~~l~~av~fI 156 (339)
.+..|.+ ....-.+.+++++|+.|||.+.|+-.... .+..+..||.|+.+.=+... .--....++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 5778888 43455667889999999999998643222 13556789999888543210 111235677777766
Q ss_pred HHHHhCCCeEEE
Q 019549 157 CENALSRQTTYV 168 (339)
Q Consensus 157 ~~~~~~g~~VLV 168 (339)
.+. ++||.
T Consensus 125 ~~~----~~vll 132 (248)
T PRK08057 125 APF----RRVLL 132 (248)
T ss_pred hcc----CCEEE
Confidence 543 45655
No 62
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=46.97 E-value=83 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=28.1
Q ss_pred hhHHHhCCccEEEEcCCCCCCCCC---c----ccccccCcEEEEEecCC
Q 019549 98 VPCLKELGVGGVITLNEPYETLVP---T----SLYHAHCIDHLVIPTRD 139 (339)
Q Consensus 98 ~~~Lk~~GIt~VVnL~~e~e~~~~---~----~~~~~~gI~~l~iPi~D 139 (339)
++.|++.||+.|||+..-.....+ . ......||.|.++|-..
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 356889999999998543221111 1 24566899999988754
No 63
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=46.59 E-value=36 Score=27.72 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=15.2
Q ss_pred hCCCeEEEEcCCCCChHHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvv 181 (339)
...++|+|+|..| .||...+
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa 81 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAA 81 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHH
Confidence 4578999999988 5776543
No 64
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=43.46 E-value=2.6e+02 Score=25.55 Aligned_cols=113 Identities=9% Similarity=0.066 Sum_probs=67.2
Q ss_pred hhHHHhCCccEEEEcCCCCCCCCCc-------ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEc
Q 019549 98 VPCLKELGVGGVITLNEPYETLVPT-------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHC 170 (339)
Q Consensus 98 ~~~Lk~~GIt~VVnL~~e~e~~~~~-------~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC 170 (339)
+..+++.|+...+++..-.....+. ....+.|...+.++ |.....+.+.+.+.+..+.+.... .++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 3456889999999994332200111 13445677766654 545577888999999999887643 7888888
Q ss_pred CC--CCChHHHHHHHHh------------------cCHHHHHHHHHhhCCCCcCCHHHHHHHH
Q 019549 171 KA--GRGRSTTVVICYL------------------MTPDAAYDYVRSIRPRVLLASAQWQAVL 213 (339)
Q Consensus 171 ~a--G~gRSgtvvaayL------------------ms~~eAl~~Vr~~RP~v~pn~~q~~~L~ 213 (339)
+. |.+=+-++++... .+.++.+.+++..-.....+...+..+.
T Consensus 198 Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~ 260 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEIS 260 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 74 4443333333333 3667777777765422233444444443
No 65
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=42.83 E-value=45 Score=25.97 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=14.6
Q ss_pred CCCeEEEEcCCCCChHHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvv 181 (339)
.+++|+++|..| .||...+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~~ 75 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQVA 75 (101)
T ss_pred CCCeEEEEeCCC-chHHHHH
Confidence 478999999988 5775543
No 66
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=37.81 E-value=57 Score=31.60 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.1
Q ss_pred eEEEEcCCCCChHHHHHHH
Q 019549 165 TTYVHCKAGRGRSTTVVIC 183 (339)
Q Consensus 165 ~VLVHC~aG~gRSgtvvaa 183 (339)
.|-|=|+.|..||++++=.
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 5889999999999987643
No 67
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=36.34 E-value=3.8e+02 Score=25.37 Aligned_cols=119 Identities=10% Similarity=0.035 Sum_probs=69.8
Q ss_pred hhHHHhCCccEEEEcCCCCCCCCCc-------ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEc
Q 019549 98 VPCLKELGVGGVITLNEPYETLVPT-------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHC 170 (339)
Q Consensus 98 ~~~Lk~~GIt~VVnL~~e~e~~~~~-------~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC 170 (339)
++..++.|....++++.......+. ....+.|...+.+. |....-.+.++.+.+..+.+.. +.++-+||
T Consensus 124 i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~ 199 (275)
T cd07937 124 IKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--DMAGLLTPYAAYELVKALKKEV--GLPIHLHT 199 (275)
T ss_pred HHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCCCHHHHHHHHHHHHHhC--CCeEEEEe
Confidence 3456788987776664221111221 13345677765554 6556777888999999888765 37899999
Q ss_pred CCCCChHHH--HHHHHh------------------cCHHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHHh
Q 019549 171 KAGRGRSTT--VVICYL------------------MTPDAAYDYVRSIRPRVLLASAQWQAVLEYYNLRV 220 (339)
Q Consensus 171 ~aG~gRSgt--vvaayL------------------ms~~eAl~~Vr~~RP~v~pn~~q~~~L~~f~~~~~ 220 (339)
+.-.|-+.+ +++.-. .+.++.+.+++..--....+...+..+.+|-+...
T Consensus 200 Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 200 HDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 855554433 333322 37777777777652223345566666655554443
No 68
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=35.96 E-value=1e+02 Score=26.85 Aligned_cols=21 Identities=14% Similarity=-0.026 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCCChHHHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTVVI 182 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvva 182 (339)
.+.+|+|.|..|..||...+.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~ 135 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAK 135 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHH
Confidence 578999999998878876433
No 69
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.04 E-value=83 Score=28.57 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 146 LGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 146 ~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
.+.+.++++.+.+.+.++++|++. |.|+|++++..+-
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a 60 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFA 60 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHH
Confidence 367889999999998999999986 8889988766553
No 70
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=32.44 E-value=1.3e+02 Score=29.80 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.1
Q ss_pred CCCeEEEEcCCCCChHHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvv 181 (339)
.+.+|+|+|..|-.||..++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 57899999977667888864
No 71
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.20 E-value=25 Score=33.33 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred EEEcCCCCCCChhHHHhCCccEEEEcCCCCCCCCCcc---cccccCcEEEEE---ecCCCCCCCCHHHHHHHHHHHHHHH
Q 019549 87 LLLGAVPFPTDVPCLKELGVGGVITLNEPYETLVPTS---LYHAHCIDHLVI---PTRDYCFAPSLGDICRAVDFICENA 160 (339)
Q Consensus 87 LylGs~p~a~d~~~Lk~~GIt~VVnL~~e~e~~~~~~---~~~~~gI~~l~i---Pi~D~~~~p~~~~l~~av~fI~~~~ 160 (339)
+..|.+....-.+.+++.+|+.|||.+.++-...... ..+..|+.|+.+ ++.+++.......+.++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Q ss_pred hCCCeEEE
Q 019549 161 LSRQTTYV 168 (339)
Q Consensus 161 ~~g~~VLV 168 (339)
..+++|+.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
No 72
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.34 E-value=43 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=14.1
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 019549 163 RQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgtvv 181 (339)
.++||+-|.+|++ |..++
T Consensus 3 ~~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV 20 (95)
T ss_pred ccEEEEECCCchh-HHHHH
Confidence 4689999999998 55544
No 73
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=31.33 E-value=76 Score=30.63 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.9
Q ss_pred eEEEEcCCCCChHHHHHHH
Q 019549 165 TTYVHCKAGRGRSTTVVIC 183 (339)
Q Consensus 165 ~VLVHC~aG~gRSgtvvaa 183 (339)
.|-|=|+.|..||.+++-.
T Consensus 247 ~i~igCtGG~HRSV~~~e~ 265 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAER 265 (288)
T ss_pred EEEEecCCCcccHHHHHHH
Confidence 4889999999999987643
No 74
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=31.12 E-value=53 Score=35.10 Aligned_cols=45 Identities=9% Similarity=0.303 Sum_probs=28.2
Q ss_pred cccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCCh
Q 019549 124 LYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGR 176 (339)
Q Consensus 124 ~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gR 176 (339)
.++..|++|.. |++.+ ++.+..+.++.+...++|++|||..=+|+
T Consensus 233 ~f~~~G~~~~~-~vDGh-------d~~~l~~al~~ak~~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 233 FFEELGFNYIG-PVDGH-------DLLELIETLKNAKKLKGPVFLHIQTKKGK 277 (617)
T ss_pred hHHHcCCcEEc-ccCCC-------CHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 47778998876 77554 34444444444444467999999844443
No 75
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=30.52 E-value=4.7e+02 Score=24.67 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=65.8
Q ss_pred hhHHHhCCccEEEEcCCCCCCCCCc------ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcC
Q 019549 98 VPCLKELGVGGVITLNEPYETLVPT------SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCK 171 (339)
Q Consensus 98 ~~~Lk~~GIt~VVnL~~e~e~~~~~------~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~ 171 (339)
.+..++.|....+++...... .+. ....+.|...+.+ .|....-.++++.+.+..+.+....+-++=+||+
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l--~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~H 191 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYI--VDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAH 191 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEE--ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 345577999888887554321 111 1234466665544 4656677888999999999877644478999998
Q ss_pred CCCChHHHHHHHHh--------------------cCHHHHHHHHHhhCCCCcCCHHHH
Q 019549 172 AGRGRSTTVVICYL--------------------MTPDAAYDYVRSIRPRVLLASAQW 209 (339)
Q Consensus 172 aG~gRSgtvvaayL--------------------ms~~eAl~~Vr~~RP~v~pn~~q~ 209 (339)
.-.|=+.+-+.+-+ .+.++.+.+++... ....+...+
T Consensus 192 n~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~-~~~~dl~~l 248 (266)
T cd07944 192 NNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF-GKKYNLEPV 248 (266)
T ss_pred CCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh-ccCCCHHHH
Confidence 65554443333333 26677777777663 233444443
No 76
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=28.99 E-value=59 Score=26.76 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=14.3
Q ss_pred hCCCeEEEEcCCCCChHHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtvv 181 (339)
....+|+|||..+-.||+.++
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa 86 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMA 86 (121)
T ss_pred CCCCEEEEECCCccccHHHHH
Confidence 457899999973336776533
No 77
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=28.80 E-value=77 Score=30.49 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=29.3
Q ss_pred ccccccCcEEEEEecCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEcC
Q 019549 123 SLYHAHCIDHLVIPTRDYCFAPSLGDICRAVDFICENALSRQTTYVHCK 171 (339)
Q Consensus 123 ~~~~~~gI~~l~iPi~D~~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~ 171 (339)
..+++.|++|+ =|++.+ ++++.++.++....-.+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGH-------dl~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGH-------DLEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCC-------CHHHHHHHHHHHhcCCCCEEEEEe
Confidence 57888899984 467665 577777777777666899999963
No 78
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=27.79 E-value=1.8e+02 Score=29.76 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=67.5
Q ss_pred HhCCccEEEEcCCCCCCCCC-cccccccCcEEEEEecCCCC-------CCCCHHHHHHHHHHHHHHHhCC-CeEEEEcC-
Q 019549 102 KELGVGGVITLNEPYETLVP-TSLYHAHCIDHLVIPTRDYC-------FAPSLGDICRAVDFICENALSR-QTTYVHCK- 171 (339)
Q Consensus 102 k~~GIt~VVnL~~e~e~~~~-~~~~~~~gI~~l~iPi~D~~-------~~p~~~~l~~av~fI~~~~~~g-~~VLVHC~- 171 (339)
.++|..+|.+|........- ....+...+.+=.+|+.+-. .....-.-+.+++.|+++.++| .-+-|||.
T Consensus 87 ~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi 166 (431)
T PRK13352 87 VKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGV 166 (431)
T ss_pred HHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence 36999999999776432100 01111111111122221100 0111112345677777777777 67999994
Q ss_pred --------------CC-CChHHHHHHHHh----------cCHHHHHHHHHh----------hCCCCcCC---HHHHHHHH
Q 019549 172 --------------AG-RGRSTTVVICYL----------MTPDAAYDYVRS----------IRPRVLLA---SAQWQAVL 213 (339)
Q Consensus 172 --------------aG-~gRSgtvvaayL----------ms~~eAl~~Vr~----------~RP~v~pn---~~q~~~L~ 213 (339)
.| +||-|++.++|+ -.+++.++..++ .||+.... ..|++.|.
T Consensus 167 ~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 167 TRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred hHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence 22 789999999999 255566666654 48887764 46666666
Q ss_pred HHHHHHh
Q 019549 214 EYYNLRV 220 (339)
Q Consensus 214 ~f~~~~~ 220 (339)
...++-.
T Consensus 247 ~lgeL~~ 253 (431)
T PRK13352 247 TLGELVK 253 (431)
T ss_pred HHHHHHH
Confidence 5555443
No 79
>PRK05320 rhodanese superfamily protein; Provisional
Probab=27.64 E-value=1.1e+02 Score=28.92 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.5
Q ss_pred CCCeEEEEcCCCCChHHH
Q 019549 162 SRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgt 179 (339)
.+++|+++|..| .||..
T Consensus 174 kdk~IvvyC~~G-~Rs~~ 190 (257)
T PRK05320 174 AGKTVVSFCTGG-IRCEK 190 (257)
T ss_pred CCCeEEEECCCC-HHHHH
Confidence 478999999999 46654
No 80
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=27.63 E-value=65 Score=25.02 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.1
Q ss_pred CCCeEEEEcCCCCChHHH
Q 019549 162 SRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgt 179 (339)
.+.+|+|+|..|. ||..
T Consensus 65 ~~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCCeEEEECCCcH-HHHH
Confidence 4689999999885 6644
No 81
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=99 Score=28.47 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 147 GDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 147 ~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
+.|.++++.|.+. .++|+|- |+||||.++-++-
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~A 58 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFA 58 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHH
Confidence 5677777776654 6778885 9999999987775
No 82
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.16 E-value=1.3e+02 Score=23.93 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=14.7
Q ss_pred CCCeEEEEcCCCCChHHHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTVVI 182 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvva 182 (339)
...+|+|||..+-.|+...+.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCeEEEEeecCCcchHHHHH
Confidence 357999999855467766543
No 83
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=27.00 E-value=1.6e+02 Score=30.10 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=64.8
Q ss_pred HhCCccEEEEcCCCCCCC-CCcccccccCcEEEEEecCCCC----CCCCHHHHHHHHHHHHHHHhCC-CeEEEEcC----
Q 019549 102 KELGVGGVITLNEPYETL-VPTSLYHAHCIDHLVIPTRDYC----FAPSLGDICRAVDFICENALSR-QTTYVHCK---- 171 (339)
Q Consensus 102 k~~GIt~VVnL~~e~e~~-~~~~~~~~~gI~~l~iPi~D~~----~~p~~~~l~~av~fI~~~~~~g-~~VLVHC~---- 171 (339)
.++|-.+|.+|....... .-....+...+..-.+|+..-. ..+..-..+.+++.|+++.++| .-+-|||.
T Consensus 86 ~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~ 165 (420)
T PF01964_consen 86 EKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRE 165 (420)
T ss_dssp HHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GG
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHH
Confidence 469999999997764321 0112333344555556654310 1122234467788888887777 67999995
Q ss_pred -----------CC-CChHHHHHHHHh----------cCHHHHHHHHHh----------hCCCCcCC---HHHHHHHHHHH
Q 019549 172 -----------AG-RGRSTTVVICYL----------MTPDAAYDYVRS----------IRPRVLLA---SAQWQAVLEYY 216 (339)
Q Consensus 172 -----------aG-~gRSgtvvaayL----------ms~~eAl~~Vr~----------~RP~v~pn---~~q~~~L~~f~ 216 (339)
.| +||.|++.+.|+ -.+++.++..|+ .||+.... ..|+..|....
T Consensus 166 ~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL~~lg 245 (420)
T PF01964_consen 166 TLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQELIILG 245 (420)
T ss_dssp GGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHHHHHH
T ss_pred HHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHHHHHH
Confidence 12 799999999999 267777777764 48887764 46776666555
Q ss_pred HHHh
Q 019549 217 NLRV 220 (339)
Q Consensus 217 ~~~~ 220 (339)
++-.
T Consensus 246 eL~~ 249 (420)
T PF01964_consen 246 ELVK 249 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 84
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=27.00 E-value=75 Score=24.45 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=12.5
Q ss_pred CCeEEEEcCCCCChHHH
Q 019549 163 RQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgt 179 (339)
+.+|+++|..|. ||..
T Consensus 56 ~~~iv~~c~~G~-rs~~ 71 (95)
T cd01534 56 GARIVLADDDGV-RADM 71 (95)
T ss_pred CCeEEEECCCCC-hHHH
Confidence 678999999984 6654
No 85
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=26.93 E-value=98 Score=29.91 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHH----hCCC---eEEEEcCCCCChHHHHHHH
Q 019549 148 DICRAVDFICENA----LSRQ---TTYVHCKAGRGRSTTVVIC 183 (339)
Q Consensus 148 ~l~~av~fI~~~~----~~g~---~VLVHC~aG~gRSgtvvaa 183 (339)
.+.++.++++.++ ++|+ .|-|=|.+|..||.+++=.
T Consensus 221 f~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGqHRSV~iae~ 263 (286)
T COG1660 221 FYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQHRSVYIAEQ 263 (286)
T ss_pred HHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCccchHHHHHH
Confidence 3344444444443 3454 5778999999999987643
No 86
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=26.70 E-value=1.1e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=13.8
Q ss_pred CCeEEEEcCCCCChHHHH
Q 019549 163 RQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgtv 180 (339)
..+|++||..|-.||...
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 478999999866677654
No 87
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=26.55 E-value=71 Score=24.53 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=13.8
Q ss_pred hCCCeEEEEcCCCCChHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgt 179 (339)
....+|+|+|..| .||..
T Consensus 59 ~~~~~ivv~c~~g-~~s~~ 76 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL 76 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH
Confidence 4578999999887 56644
No 88
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=26.46 E-value=65 Score=28.09 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcC
Q 019549 151 RAVDFICENALSRQTTYVHCK 171 (339)
Q Consensus 151 ~av~fI~~~~~~g~~VLVHC~ 171 (339)
-++.+++++..+|.+|+|+|.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 788999999999999999994
No 89
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=26.36 E-value=2.2e+02 Score=28.96 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=66.2
Q ss_pred HhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecCCCCCCCCHHHH------------HHHHHHHHHHHhCC-CeEEE
Q 019549 102 KELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTRDYCFAPSLGDI------------CRAVDFICENALSR-QTTYV 168 (339)
Q Consensus 102 k~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~D~~~~p~~~~l------------~~av~fI~~~~~~g-~~VLV 168 (339)
.++|..+|.+|....... ..+..=++-..+|+ .+.|..+.+ +.+.+.+.++.++| --+-|
T Consensus 88 ~~~GADtvMDLStGgdl~----eiR~~ii~~s~vPv---GTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTI 160 (432)
T COG0422 88 IKWGADTVMDLSTGGDLH----EIREWIIRNSPVPV---GTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTI 160 (432)
T ss_pred HHhCcceeEecccCCCHH----HHHHHHHhcCCCCc---CCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEe
Confidence 369999999997764321 11111122222333 234444333 34556666666666 57889
Q ss_pred EcC---------------CC-CChHHHHHHHHh----------cCHHHHHHHHHh----------hCCCCcCC---HHHH
Q 019549 169 HCK---------------AG-RGRSTTVVICYL----------MTPDAAYDYVRS----------IRPRVLLA---SAQW 209 (339)
Q Consensus 169 HC~---------------aG-~gRSgtvvaayL----------ms~~eAl~~Vr~----------~RP~v~pn---~~q~ 209 (339)
||. .| +||-|++.++|+ -.+++-++..++ .||+.... ..|.
T Consensus 161 HaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~ 240 (432)
T COG0422 161 HAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQF 240 (432)
T ss_pred ehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHH
Confidence 991 22 799999999998 256666666664 48887764 4566
Q ss_pred HHHHHHHHHH
Q 019549 210 QAVLEYYNLR 219 (339)
Q Consensus 210 ~~L~~f~~~~ 219 (339)
..|....++-
T Consensus 241 ~EL~tlgeL~ 250 (432)
T COG0422 241 AELITLGELT 250 (432)
T ss_pred HHHHHHHHHH
Confidence 6665554443
No 90
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.12 E-value=1.9e+02 Score=23.59 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=13.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHh
Q 019549 164 QTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 164 ~~VLVHC~aG~gRSgtvvaayL 185 (339)
++||+-|.+|. |.++++--+
T Consensus 2 kkILlvCg~G~--STSlla~k~ 21 (104)
T PRK09590 2 KKALIICAAGM--SSSMMAKKT 21 (104)
T ss_pred cEEEEECCCch--HHHHHHHHH
Confidence 46999999999 444544444
No 91
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=26.05 E-value=2.3e+02 Score=25.49 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHhcCHHHHHHHHHhhCC
Q 019549 145 SLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYLMTPDAAYDYVRSIRP 200 (339)
Q Consensus 145 ~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayLms~~eAl~~Vr~~RP 200 (339)
..+.+.++...|-+.+.+|++||++ |.|+|++=+-.+- .+-+..++..||
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaadAqHfa---ael~gRf~~eR~ 72 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAADAQHFA---AELTGRFEKERP 72 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchhhHHHHH---HHHhhHHHhcCC
Confidence 3567788888888888999999885 6667766444442 233344444554
No 92
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=25.95 E-value=1e+02 Score=26.15 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcC
Q 019549 149 ICRAVDFICENALSRQTTYVHCK 171 (339)
Q Consensus 149 l~~av~fI~~~~~~g~~VLVHC~ 171 (339)
..-++..++++..+|.+|+|+|.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~ 37 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCP 37 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC
Confidence 56778889999999999999995
No 93
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.54 E-value=1.3e+02 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.7
Q ss_pred HhCCCeEEEEcCCCCChHHHHH
Q 019549 160 ALSRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 160 ~~~g~~VLVHC~aG~gRSgtvv 181 (339)
+..+.+|+|.|..|-.||..++
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH
Confidence 3557899999986556776543
No 94
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=25.23 E-value=73 Score=25.91 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=14.4
Q ss_pred hCCCeEEEEcCCCCChHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtv 180 (339)
..+++|+|+|..|. ||...
T Consensus 70 ~~~~~ivv~C~~G~-rs~~a 88 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTA 88 (122)
T ss_pred CCCCcEEEECCCCC-cHHHH
Confidence 44789999999984 77543
No 95
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=25.20 E-value=72 Score=24.55 Aligned_cols=19 Identities=5% Similarity=-0.029 Sum_probs=14.1
Q ss_pred hCCCeEEEEcCCCCChHHHH
Q 019549 161 LSRQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 161 ~~g~~VLVHC~aG~gRSgtv 180 (339)
..+.+|+|+|..| +||..+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~ 72 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA 72 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH
Confidence 4568999999876 577553
No 96
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=25.16 E-value=1.4e+02 Score=24.16 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=13.6
Q ss_pred CCCeEEEEcCCCCChHHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtvv 181 (339)
.+.+|+++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 357899999988 5665543
No 97
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.08 E-value=1.4e+02 Score=26.98 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHHh
Q 019549 143 APSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICYL 185 (339)
Q Consensus 143 ~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaayL 185 (339)
....+.+.++.+.+.+.+.++++|++. |.|+|+.++..+-
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa 64 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFA 64 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHH
Confidence 345677888888888888899988886 8888888776654
No 98
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=24.87 E-value=96 Score=26.55 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEcC
Q 019549 148 DICRAVDFICENALSRQTTYVHCK 171 (339)
Q Consensus 148 ~l~~av~fI~~~~~~g~~VLVHC~ 171 (339)
...-++..++++..+|.+|+|+|.
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~ 37 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCE 37 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456678888999999999999995
No 99
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=24.78 E-value=2.3e+02 Score=21.66 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCccEEEEcCCCCCCCCCcccccccCc-EEEEEecCCC---CCCCCHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHH
Q 019549 104 LGVGGVITLNEPYETLVPTSLYHAHCI-DHLVIPTRDY---CFAPSLGDICRAVDFICENALSRQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 104 ~GIt~VVnL~~e~e~~~~~~~~~~~gI-~~l~iPi~D~---~~~p~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgt 179 (339)
.+=..|||+..+.+ |....| .-+++|.... ........+.............+..|+++|..| .|+..
T Consensus 11 ~~~~~liD~R~~~~-------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~-~~~~~ 82 (113)
T PF00581_consen 11 NESVLLIDVRSPEE-------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSG-WRSGS 82 (113)
T ss_dssp TTTEEEEEESSHHH-------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSS-CHHHH
T ss_pred CCCeEEEEeCCHHH-------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeecc-cccch
Confidence 34457888875422 111222 1256777432 123334445555555555456678999999665 45655
Q ss_pred HHHH
Q 019549 180 VVIC 183 (339)
Q Consensus 180 vvaa 183 (339)
.+++
T Consensus 83 ~~~~ 86 (113)
T PF00581_consen 83 AAAA 86 (113)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5544
No 100
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=24.77 E-value=43 Score=27.08 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=9.1
Q ss_pred CCeEEEEcCCC
Q 019549 163 RQTTYVHCKAG 173 (339)
Q Consensus 163 g~~VLVHC~aG 173 (339)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999876
No 101
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=24.73 E-value=79 Score=24.38 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=11.5
Q ss_pred CeEEEEcCCCCChH
Q 019549 164 QTTYVHCKAGRGRS 177 (339)
Q Consensus 164 ~~VLVHC~aG~gRS 177 (339)
++|++.|.+|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 46999999999844
No 102
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=24.24 E-value=4.3e+02 Score=25.69 Aligned_cols=79 Identities=25% Similarity=0.297 Sum_probs=42.9
Q ss_pred hHHHhCCccEEEEcCCCCCCCCCcccccccCcEEEEEecC-CCCCCCC------H---HHHHHHHHHHHHHHhCCCeEEE
Q 019549 99 PCLKELGVGGVITLNEPYETLVPTSLYHAHCIDHLVIPTR-DYCFAPS------L---GDICRAVDFICENALSRQTTYV 168 (339)
Q Consensus 99 ~~Lk~~GIt~VVnL~~e~e~~~~~~~~~~~gI~~l~iPi~-D~~~~p~------~---~~l~~av~fI~~~~~~g~~VLV 168 (339)
+.|++++|..+|-+........-....+..++....+|-. |++.+.+ . +...++++-|.+......+++|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta~s~~rv~i 164 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFV 164 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 4688999999999966532211112333368888888865 3322221 1 2233334434332233456777
Q ss_pred EcCCCCChH
Q 019549 169 HCKAGRGRS 177 (339)
Q Consensus 169 HC~aG~gRS 177 (339)
.=.+|+.-.
T Consensus 165 vEvMGR~~G 173 (301)
T TIGR02482 165 IEVMGRHAG 173 (301)
T ss_pred EEeCCCCHH
Confidence 777776533
No 103
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=24.20 E-value=1e+02 Score=23.70 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHH
Q 019549 163 RQTTYVHCKAGRGRSTTVVICY 184 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgtvvaay 184 (339)
..+|+|+|..|...++..++..
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~ 71 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARR 71 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHH
Confidence 6799999999854333333333
No 104
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=23.59 E-value=2.6e+02 Score=28.61 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=66.9
Q ss_pred HhCCccEEEEcCCCCCCCCC-cccccccCcEEEEEecCCCC----CCCCHHHHHHHHHHHHHHHhCC-CeEEEEcC----
Q 019549 102 KELGVGGVITLNEPYETLVP-TSLYHAHCIDHLVIPTRDYC----FAPSLGDICRAVDFICENALSR-QTTYVHCK---- 171 (339)
Q Consensus 102 k~~GIt~VVnL~~e~e~~~~-~~~~~~~gI~~l~iPi~D~~----~~p~~~~l~~av~fI~~~~~~g-~~VLVHC~---- 171 (339)
.++|..+|.+|........- ....+...+.+=.+|+.+-. .....-.-+.+++.|+++.++| .-+-|||.
T Consensus 87 ~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~ 166 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLLE 166 (423)
T ss_pred HHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHH
Confidence 36999999999776432100 01111111111122221100 0001112345677777777777 67999995
Q ss_pred -------CC-----CChHHHHHHHHh----------cCHHHHHHHHHh----------hCCCCcCC---HHHHHHHHHHH
Q 019549 172 -------AG-----RGRSTTVVICYL----------MTPDAAYDYVRS----------IRPRVLLA---SAQWQAVLEYY 216 (339)
Q Consensus 172 -------aG-----~gRSgtvvaayL----------ms~~eAl~~Vr~----------~RP~v~pn---~~q~~~L~~f~ 216 (339)
.| +||-|++.++|+ -.+++.++..++ .||+.... ..|++.|....
T Consensus 167 ~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lg 246 (423)
T TIGR00190 167 YVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLG 246 (423)
T ss_pred HHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHH
Confidence 22 689999999999 145555555553 48887764 46666666555
Q ss_pred HHHh
Q 019549 217 NLRV 220 (339)
Q Consensus 217 ~~~~ 220 (339)
++-.
T Consensus 247 eL~~ 250 (423)
T TIGR00190 247 ELVE 250 (423)
T ss_pred HHHH
Confidence 5443
No 105
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.55 E-value=1.8e+02 Score=26.01 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHH
Q 019549 145 SLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVIC 183 (339)
Q Consensus 145 ~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaa 183 (339)
..+.+.++++.|.+++.++++|++. |.|.|+.++..
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A~~ 61 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDAMH 61 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHH
Confidence 3478999999999999999999876 66777665443
No 106
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=23.21 E-value=90 Score=24.21 Aligned_cols=18 Identities=0% Similarity=0.069 Sum_probs=13.7
Q ss_pred CCeEEEEcCCCCChHHHHH
Q 019549 163 RQTTYVHCKAGRGRSTTVV 181 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgtvv 181 (339)
+++|+|+|..|. ||..++
T Consensus 65 ~~~vv~~c~~g~-~s~~~a 82 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFA 82 (105)
T ss_pred CCeEEEEeCCCc-cHHHHH
Confidence 678999999885 665543
No 107
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=22.24 E-value=1e+02 Score=24.39 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=13.4
Q ss_pred CCCeEEEEcCCCCChHHHH
Q 019549 162 SRQTTYVHCKAGRGRSTTV 180 (339)
Q Consensus 162 ~g~~VLVHC~aG~gRSgtv 180 (339)
.+.+|+|+|..|. ||..+
T Consensus 77 ~~~~iv~yc~~g~-~s~~~ 94 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL 94 (118)
T ss_pred CCCCEEEECCcHH-HHHHH
Confidence 4689999999873 66543
No 108
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=21.94 E-value=1.5e+02 Score=25.65 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.6
Q ss_pred CCeEEEEcCCCCChHHH
Q 019549 163 RQTTYVHCKAGRGRSTT 179 (339)
Q Consensus 163 g~~VLVHC~aG~gRSgt 179 (339)
.+.+.++|+.|. ||.+
T Consensus 89 d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 89 DKEIIFGCASGV-RSLK 104 (136)
T ss_pred CCcEEEEeccCc-chhH
Confidence 458999999994 6654
No 109
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.65 E-value=2e+02 Score=24.04 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHHhCCCeEEEEcCCCCChHHHHHHHH
Q 019549 145 SLGDICRAVDFICENALSRQTTYVHCKAGRGRSTTVVICY 184 (339)
Q Consensus 145 ~~~~l~~av~fI~~~~~~g~~VLVHC~aG~gRSgtvvaay 184 (339)
..+.+.++.+.+.+.+.+|++|++. |.|-|++++..+
T Consensus 17 ~~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~~~ 53 (138)
T PF13580_consen 17 QAEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIASHF 53 (138)
T ss_dssp SHHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHHHH
Confidence 3467889999999999999888775 455666654443
No 110
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.56 E-value=1.3e+02 Score=28.29 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=43.5
Q ss_pred CCChhHHHhCCccEEEEcCCCCCCCCCc--ccccccCcEEEEEecCCCCCC-CCHHHHHHHHHHHHHHH
Q 019549 95 PTDVPCLKELGVGGVITLNEPYETLVPT--SLYHAHCIDHLVIPTRDYCFA-PSLGDICRAVDFICENA 160 (339)
Q Consensus 95 a~d~~~Lk~~GIt~VVnL~~e~e~~~~~--~~~~~~gI~~l~iPi~D~~~~-p~~~~l~~av~fI~~~~ 160 (339)
..+...+++++|+.||+=..... .... ......||..+-+.=+..... +....++++.+++.+.+
T Consensus 180 e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 180 ELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHLL 247 (248)
T ss_pred HHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHhh
Confidence 35677899999999998766543 2222 255678998887755543222 44577888888887653
Done!