BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019550
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 174/290 (60%), Gaps = 7/290 (2%)
Query: 49 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKT 108
+ RV+ G + FQD L ++K FGKVL++D +QS E DE+IYHE L+HP +L H PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 109 VFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVND 167
V I+GGGEG+ RE LKH ++EK VM DID E+V+ +R + +Q AF + LV++D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 168 AKAELEKRNEKFDVIFGDLADPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAG 226
A+A LE+ E++DV+ DL DPV E P LYT FY R++K LN G+ QAG
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQAG-MI 198
Query: 227 IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEEIDNRIK 284
+ TH V ++ T+++ F++V +Y H+P F +G+++ASD P + + I+ RI+
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258
Query: 285 SRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFIHGHGVA 334
R N L +L + + K + +L ET V T+++ ++ G A
Sbjct: 259 ER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 173/290 (59%), Gaps = 7/290 (2%)
Query: 49 LNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKT 108
+ RV+ G + FQD L ++K FGKVL++D +QS E DE+IYHE L+HP +L H PK
Sbjct: 21 MERVIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIYHETLVHPAMLTHPEPKR 80
Query: 109 VFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVND 167
V I+GGGEG+ RE LKH ++EK VM DID E+V+ +R + +Q AF + LV++D
Sbjct: 81 VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140
Query: 168 AKAELEKRNEKFDVIFGDLADPV-EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAG 226
A+A LE+ E++DV+ DL DPV E P LYT FY R++K LN G+ Q G
Sbjct: 141 ARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFY-RLVKAHLNPGGVMGMQTG-MI 198
Query: 227 IFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEEIDNRIK 284
+ TH V ++ T+++ F++V +Y H+P F +G+++ASD P + + I+ RI+
Sbjct: 199 LLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFGFLLASDAFDPAAFSEGVIEARIR 258
Query: 285 SRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFIHGHGVA 334
R N L +L + + K + +L ET V T+++ ++ G A
Sbjct: 259 ER-NLALRHLTAPYLEAMFVLPKDLLEALEKETMVSTDQNPFYVTPEGEA 307
>pdb|3O4F|A Chain A, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|B Chain B, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|C Chain C, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|D Chain D, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|E Chain E, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|F Chain F, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|G Chain G, Crystal Structure Of Spermidine Synthase From E. Coli
pdb|3O4F|H Chain H, Crystal Structure Of Spermidine Synthase From E. Coli
Length = 294
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 137/252 (54%), Gaps = 9/252 (3%)
Query: 35 FEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHEC 94
+ E + D FA++ VL+ ++ QD+ + + FG+V+ +DG +Q+ E DEFIYHE
Sbjct: 13 WHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDEFIYHEM 72
Query: 95 LIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFL-TVNQ 153
+ H PLL H + K V I+GGG+G+ RE +HK++E + M +ID VV FCR++L N
Sbjct: 73 MTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA 132
Query: 154 EAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLN 213
++ + LV++D + + ++ FDVI D DP+ GP L+T +FYE K LN
Sbjct: 133 GSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPI--GPGESLFTSAFYEG-CKRCLN 189
Query: 214 DNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFAD---TWGWVMASDQ 270
GIFV Q G F +E + + F V Y A +P++ T+ W +D
Sbjct: 190 PGGIFVAQNGVC--FLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDNDA 247
Query: 271 PFSINAEEIDNR 282
++ E I R
Sbjct: 248 LRHLSTEIIQAR 259
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 13/284 (4%)
Query: 34 WFEEVID--DDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIY 91
WF E S + ++LH S +QDI + +K +G VLV+DG +Q E DEF Y
Sbjct: 22 WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 81
Query: 92 HECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151
E + + PL H NP+ V I+GGG+G RE +KH S+E VV C+ID++V+ ++FL
Sbjct: 82 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 141
Query: 152 NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPK 211
+ S KL L V D +++ + FDVI D +DP+ GP L+ +S+Y+ ++K
Sbjct: 142 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQ-LMKTA 198
Query: 212 LNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-ADTWGWVMASDQ 270
L ++G+ Q + H ++ + + +F V +P++ + G+++ S
Sbjct: 199 LKEDGVLCCQG--ECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCSKN 256
Query: 271 PFSINAEEIDNRIKSRI-NAELLYLNG----ASFLSSTTMNKAV 309
P + E + + ++ +L Y N A+F+ KA+
Sbjct: 257 PSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 300
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 149/285 (52%), Gaps = 15/285 (5%)
Query: 34 WFEEVID--DDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIY 91
WF E S + ++LH S +QDI + +K +G VLV+DG +Q E DEF Y
Sbjct: 22 WFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSY 81
Query: 92 HECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151
E + + PL H NP+ V I+GGG+G RE +KH S+E VV C+ID++V+ ++FL
Sbjct: 82 QEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG 141
Query: 152 NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPK 211
+ S KL L V D +++ + FDVI D +DP+ GP L+ +S+Y+ ++K
Sbjct: 142 MAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPM--GPAESLFKESYYQ-LMKTA 198
Query: 212 LNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYT-AHVPSF-ADTWGWVMASD 269
L ++G+ Q + H ++ + + +F VVAY +P++ + G+++ S
Sbjct: 199 LKEDGVLCCQG--ECQWLHLDLIKEMRQFCQSLFP-VVAYAYCTIPTYPSGQIGFMLCSK 255
Query: 270 QPFSINAEEIDNRIKSRI-NAELLYLNG----ASFLSSTTMNKAV 309
P + E + + ++ +L Y N A+F+ KA+
Sbjct: 256 NPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKAL 300
>pdb|1MJF|A Chain A, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
pdb|1MJF|B Chain B, Putative Spermidine Synthetase From Pyrococcus Furiosus
Pfu- 132382
Length = 281
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 15/251 (5%)
Query: 46 SFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQN 105
+F + + +++ S++Q I + +T+ FG++L +DG +Q + E YHE L+HP +L H
Sbjct: 16 AFKIKKKIYEKLSKYQKIEVYETEGFGRLLALDGTVQLVTLGERSYHEPLVHPAMLAHPK 75
Query: 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ---EAFCS---K 159
PK V ++GGG+G RE L+H +++V+M +ID++V+ + + ++ EA + +
Sbjct: 76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHE 134
Query: 160 KLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219
K L + D E K N FDVI D DPV GP L+++ FY R + LN+ GI+V
Sbjct: 135 KAKLTIGDG-FEFIKNNRGFDVIIADSTDPV--GPAKVLFSEEFY-RYVYDALNNPGIYV 190
Query: 220 TQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEI 279
TQAG +FT + + S Y +K+VF V Y+ V +A W +++ I+ +I
Sbjct: 191 TQAGSVYLFTDELI--SAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVKG--DIDFTKI 246
Query: 280 DNRIKSRINAE 290
D ++ E
Sbjct: 247 DRERAKKLQLE 257
>pdb|1IY9|A Chain A, Crystal Structure Of Spermidine Synthase
pdb|1IY9|B Chain B, Crystal Structure Of Spermidine Synthase
pdb|1IY9|C Chain C, Crystal Structure Of Spermidine Synthase
pdb|1IY9|D Chain D, Crystal Structure Of Spermidine Synthase
Length = 275
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 138/239 (57%), Gaps = 6/239 (2%)
Query: 33 CWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYH 92
W+ E + + +N+ LH +EFQ + +++T+ FG +L +DG + ++E DEF+YH
Sbjct: 3 LWYTEKQTKNFGITMKVNKTLHTEQTEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYH 62
Query: 93 ECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN 152
E + H PL H NP+ V ++GGG+G RE LKH S++K + DID +V+++ ++FL
Sbjct: 63 EMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI 122
Query: 153 QEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKL 212
++++ V+D + K ++DVI D +PV GP L+TK FY I K L
Sbjct: 123 AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPV--GPAVNLFTKGFYAGIAK-AL 179
Query: 213 NDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-ADTWGWVMASDQ 270
++GIFV Q FT E+ +++ +K++F YTA++P++ + W + + S +
Sbjct: 180 KEDGIFVAQTDNPW-FT-PELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGSKK 236
>pdb|1XJ5|A Chain A, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|B Chain B, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|C Chain C, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|1XJ5|D Chain D, X-Ray Structure Of Spermidine Synthase From Arabidopsis
Thaliana Gene At1g23820
pdb|2Q41|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
pdb|2Q41|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Spermidine Synthase From Arabidopsis Thaliana Gene
At1g23820
Length = 334
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 138/257 (53%), Gaps = 11/257 (4%)
Query: 46 SFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQN 105
S + +VL +G S++QD+ + + +GKVLV+DG +Q E DE Y E + H PL N
Sbjct: 61 SLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEXITHLPLCSIPN 120
Query: 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV 165
PK V ++GGG+G RE +H S+E++ C+ID+ VVD ++F + ++NLV+
Sbjct: 121 PKKVLVIGGGDGGVLREVARHASIEQIDXCEIDKXVVDVSKQFFPDVAIGYEDPRVNLVI 180
Query: 166 NDAKAELEKRNE-KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224
D A L+ E +D + D +DP+ GP +L+ K F++ + + L G+ TQA
Sbjct: 181 GDGVAFLKNAAEGSYDAVIVDSSDPI--GPAKELFEKPFFQSVAR-ALRPGGVVCTQA-- 235
Query: 225 AGIFTHKEVFSSIYNTIKQVFKHVVAYT-AHVPSF-ADTWGWVMASDQPFSINAEEIDNR 282
++ H ++ I + +++FK V Y VP++ + G+ + S + ++ + N
Sbjct: 236 ESLWLHXDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFXLCSTEGPDVDFKHPLNP 295
Query: 283 I---KSRINAELLYLNG 296
I S+ N L + N
Sbjct: 296 IDESSSKSNGPLKFYNA 312
>pdb|1JQ3|A Chain A, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|B Chain B, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|C Chain C, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1JQ3|D Chain D, Crystal Structure Of Spermidine Synthase In Complex With
Transition State Analogue Adodato
pdb|1INL|A Chain A, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|B Chain B, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|C Chain C, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
pdb|1INL|D Chain D, Crystal Structure Of Spermidine Synthase From Thermotoga
Maritima
Length = 296
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 130/267 (48%), Gaps = 7/267 (2%)
Query: 30 QDCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEF 89
Q +FE +++ +NRV++ G S+ Q I + + G V +DG + E DEF
Sbjct: 15 QHLWYFEYYTGNNVGLFMKMNRVIYSGQSDIQRIDIFENPDLGVVFALDGITMTTEKDEF 74
Query: 90 IYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFL 149
+YHE L H P+ H NPK V I+GGG+G RE LKH S+EK ++C++D V++ R++L
Sbjct: 75 MYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL 134
Query: 150 TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILK 209
F + +V+ + + K +FDVI D DP G + L+T+ FY+
Sbjct: 135 KQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGH-LFTEEFYQACYD 193
Query: 210 PKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-ADTWGWVMAS 268
L ++G+F + F F Y I +VF Y + ++ + W + AS
Sbjct: 194 -ALKEDGVFSAETEDP--FYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTFAS 250
Query: 269 DQPFSINAEEIDNRIKSRINAELLYLN 295
I ++ D + N EL Y N
Sbjct: 251 KGIDPI--KDFDPEKVRKFNKELKYYN 275
>pdb|2B2C|A Chain A, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
pdb|2B2C|B Chain B, Cloning, Expression, Characterisation And Three-
Dimensional Structure Determination Of The
Caenorhabditis Elegans Spermidine Synthase
Length = 314
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%)
Query: 45 WSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQ 104
+S + +VL S++QD+ + ++ +G VLV+DG +Q+ E DEF Y E L H P+ H
Sbjct: 48 FSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAHP 107
Query: 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLV 164
+PK V I+GGG+G RE LKH+S+EKV MC+ID+ V+D ++FL F KL+L
Sbjct: 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLF 167
Query: 165 VNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224
D L+ +FDVI D +DPV GP L+ +S+YE +L+ L ++GI +Q
Sbjct: 168 CGDGFEFLKNHKNEFDVIITDSSDPV--GPAESLFGQSYYE-LLRDALKEDGILSSQG-- 222
Query: 225 AGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-ADTWGWVMAS 268
++ H + + + +++F V + V ++ + + G+++ +
Sbjct: 223 ESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLICA 267
>pdb|2E5W|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2E5W|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3
pdb|2ZSU|A Chain A, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|B Chain B, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|C Chain C, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|D Chain D, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|E Chain E, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
pdb|2ZSU|F Chain F, Crystal Structure Of Spermidine Synthase From Pyrococcus
Horikoshii Ot3, P1 Form
Length = 280
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 145/251 (57%), Gaps = 14/251 (5%)
Query: 46 SFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQN 105
+F + R + + SE+Q I + +T+ FGK+L IDG +Q E YHE L+HP +L H N
Sbjct: 17 AFKVKRKILEEQSEYQKIEVYETEGFGKLLAIDGTVQLVTEGEKSYHEPLVHPAMLAHPN 76
Query: 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ---EAFCS---K 159
P+ V I+GGG+G A RE LKH+ +E+V+M +ID++V++ +++ ++ E S +
Sbjct: 77 PRRVLIIGGGDGGAIREVLKHEEVEEVIMVEIDKKVIEISAKYIGIDGGILEKMLSDKHE 136
Query: 160 KLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219
K L++ D +E+ N FDVI D DPV GP L+++ FY+ + LND GI+V
Sbjct: 137 KGKLIIGDGVKFIEE-NSGFDVIIVDSTDPV--GPAEMLFSEEFYKNAYR-ALNDPGIYV 192
Query: 220 TQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEI 279
TQAG +FT + F + Y +++VF V Y+ V +A W +++ SI+ ++
Sbjct: 193 TQAGSVYLFTDE--FLTAYRKMRKVFDKVYYYSFPVIGYASPWAFLVGVKG--SIDFMKV 248
Query: 280 DNRIKSRINAE 290
D ++ E
Sbjct: 249 DAEKGKKLGLE 259
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)
Query: 34 WFEE--VIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIY 91
WF E ++ +S + ++L++ S++Q++ + ++ +GKVLV+DG +Q E DEF Y
Sbjct: 4 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 63
Query: 92 HECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151
HE + H P+ + PK V ++GGG+G RE K+KS+E + +C+ID+ V++ + +
Sbjct: 64 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 123
Query: 152 NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPK 211
+ K++N+ + DA LE +DVI D +DP+ GP L+ ++FYE+I
Sbjct: 124 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA- 180
Query: 212 LNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 258
L NG V Q ++ H ++ K++FK V +P++
Sbjct: 181 LKPNGYCVAQC--ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 225
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)
Query: 34 WFEE--VIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIY 91
WF E ++ +S + ++L++ S++Q++ + ++ +GKVLV+DG +Q E DEF Y
Sbjct: 5 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 64
Query: 92 HECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151
HE + H P+ + PK V ++GGG+G RE K+KS+E + +C+ID+ V++ + +
Sbjct: 65 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124
Query: 152 NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPK 211
+ K++N+ + DA LE +DVI D +DP+ GP L+ ++FYE+I
Sbjct: 125 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA- 181
Query: 212 LNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 258
L NG V Q ++ H ++ K++FK V +P++
Sbjct: 182 LKPNGYCVAQC--ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 226
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)
Query: 34 WFEE--VIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIY 91
WF E ++ +S + ++L++ S++Q++ + ++ +GKVLV+DG +Q E DEF Y
Sbjct: 43 WFSEFSIMWPGQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAY 102
Query: 92 HECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151
HE + H P+ + PK V ++GGG+G RE K+KS+E + +C+ID+ V++ + +
Sbjct: 103 HEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162
Query: 152 NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPK 211
+ K++N+ + DA LE +DVI D +DP+ GP L+ ++FYE+I
Sbjct: 163 ISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI--GPAETLFNQNFYEKIYNA- 219
Query: 212 LNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF 258
L NG V Q ++ H ++ K++FK V +P++
Sbjct: 220 LKPNGYCVAQC--ESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTY 264
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 24/239 (10%)
Query: 34 WFEEVIDDDLKW-----SFALNRVLHKGTSEFQDIALLDTKR---FGKVLVIDGKMQSAE 85
WF E D +W S + +VL+ ++FQ + + ++ +G V +DG +Q +
Sbjct: 19 WFREEND---QWPGQAXSLRVEKVLYDAPTKFQHLTIFESDPKGPWGTVXALDGCIQVTD 75
Query: 86 VDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFC 145
DEF+YHE L H L H P+ V I+GGG+G RE L+H ++E + DID EV +
Sbjct: 76 YDEFVYHEVLGHTSLCSHPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVXEQS 135
Query: 146 RRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDLADPVEGGPCYQLYTKSFY 204
++ + + + V D A + + + +DV+ D DP GP +L+ ++FY
Sbjct: 136 KQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPA--GPASKLFGEAFY 193
Query: 205 E---RILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSFA 259
+ RILKP +GI Q I+ E+ I++ F V HVP++
Sbjct: 194 KDVLRILKP----DGICCNQG--ESIWLDLELIEKXSRFIRETGFASVQYALXHVPTYP 246
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 24/231 (10%)
Query: 47 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNP 106
+ ++ V++ S +Q+I +L +K+FG +L++ G + AE D Y ++ +
Sbjct: 149 YDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSGKEDYTG- 206
Query: 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV-------NQEAFCSK 159
K V I+GGG+G E +K K + V M +IDQ V+D C++++ N + C +
Sbjct: 207 KDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQ 265
Query: 160 KLNLVVNDAKAELEKRNEKFDVIFGDL-ADPVEGGPCYQLYTKSFYERILKPK---LNDN 215
L K +FD + DL A P+ P + T F IL L +
Sbjct: 266 VLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSP-EEDSTWEFLRLILDLSMKVLKQD 324
Query: 216 GIFVTQAG----PAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTW 262
G + TQ + ++E +Y + + K +V VPS+ + W
Sbjct: 325 GKYFTQGNCVNLTEALSLYEEQLGRLYCPV-EFSKEIVC----VPSYLELW 370
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Query: 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCR-----RFLTVNQEA----FCS 158
TV +GGG G+ + L+H L+K+ + ++D+E+V+ + R +N++A FCS
Sbjct: 34 TVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92
Query: 159 --KKLNLVVN 166
K+L +V N
Sbjct: 93 LGKELKVVGN 102
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Query: 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCR-----RFLTVNQEA----FCS 158
TV +GGG G+ + L+H L+K+ + ++D+E+V+ + R +N++A FCS
Sbjct: 33 TVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 91
Query: 159 --KKLNLVVN 166
K+L +V N
Sbjct: 92 LGKELKVVGN 101
>pdb|4GGO|A Chain A, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|B Chain B, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|C Chain C, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
pdb|4GGO|D Chain D, Crystal Structure Of Trans-2-Enoyl-Coa Reductase From
Treponema Denticola
Length = 401
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 149 LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERIL 208
+T++ +AF + V+ +AK K+ KFD+I LA PV P + KS +L
Sbjct: 115 VTIDGDAFSDEIKAQVIEEAK----KKGIKFDLIVYSLASPVRTDPDTGIMHKS----VL 166
Query: 209 KP 210
KP
Sbjct: 167 KP 168
>pdb|4FBG|A Chain A, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|B Chain B, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|C Chain C, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|D Chain D, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|E Chain E, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|F Chain F, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|G Chain G, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|H Chain H, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|I Chain I, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|J Chain J, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|K Chain K, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|L Chain L, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|M Chain M, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|N Chain N, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|O Chain O, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
pdb|4FBG|P Chain P, Crystal Structure Of Treponema Denticola Trans-2-Enoyl-Coa
Reductase In Complex With Nad
Length = 405
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 149 LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERIL 208
+T++ +AF + V+ +AK K+ KFD+I LA PV P + KS +L
Sbjct: 111 VTIDGDAFSDEIKAQVIEEAK----KKGIKFDLIVYSLASPVRTDPDTGIXHKS----VL 162
Query: 209 KP 210
KP
Sbjct: 163 KP 164
>pdb|4GGP|A Chain A, Crystal Structure Of Selenomethionine Containing
Trans-2-Enoyl-Coa Reductase From Treponema Denticola
pdb|4GGP|B Chain B, Crystal Structure Of Selenomethionine Containing
Trans-2-Enoyl-Coa Reductase From Treponema Denticola
pdb|4GGP|C Chain C, Crystal Structure Of Selenomethionine Containing
Trans-2-Enoyl-Coa Reductase From Treponema Denticola
pdb|4GGP|D Chain D, Crystal Structure Of Selenomethionine Containing
Trans-2-Enoyl-Coa Reductase From Treponema Denticola
Length = 401
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 149 LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERIL 208
+T++ +AF + V+ +AK K+ KFD+I LA PV P + KS +L
Sbjct: 115 VTIDGDAFSDEIKAQVIEEAK----KKGIKFDLIVYSLASPVRTDPDTGIXHKS----VL 166
Query: 209 KP 210
KP
Sbjct: 167 KP 168
>pdb|4HKT|A Chain A, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|B Chain B, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|C Chain C, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|D Chain D, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
Length = 331
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 132 VVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNL----------VVNDAKAELEKR-NEKFD 180
VV+C D RF + FC K ++L VV+D KA+L N +FD
Sbjct: 67 VVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLXVGFNRRFD 126
Query: 181 VIFGDLADPVEGG 193
F + ++ G
Sbjct: 127 PHFXAVRKAIDDG 139
>pdb|3TEP|A Chain A, Lytr-Cps2a-Psr Family Protein With Bound Octaprenyl
Pyrophosphate Lipid And Magnesium Ion
pdb|3TFL|A Chain A, Lytr-Cps2a-Psr Family Protein With Bound Octaprenyl
Pyrophosphate Lipid
pdb|2XXP|A Chain A, A Widespread Family Of Bacterial Cell Wall Assembly
Proteins
Length = 398
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 149 LTVNQEA-FCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERI 207
LTVNQ + + + +L+ + KA + N F+ I +L P ++YTK F +++
Sbjct: 63 LTVNQSSSYLAAYKSLIAGETKAIV--LNSVFENII-ELEYPDYASKIKKIYTKGFTKKV 119
Query: 208 LKPKLNDNGIF------VTQAGPAGIFTHKEV--FSSIYNTIKQVFKHVVAYTAHVP 256
PK + N F + GP + +V ++ K++ A+VP
Sbjct: 120 EAPKTSKNQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVP 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,301,524
Number of Sequences: 62578
Number of extensions: 428086
Number of successful extensions: 947
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 33
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)