Query 019550
Match_columns 339
No_of_seqs 301 out of 2959
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02823 spermine synthase 100.0 1.7E-63 3.8E-68 477.3 34.0 330 5-335 1-334 (336)
2 PRK00536 speE spermidine synth 100.0 6.8E-59 1.5E-63 430.2 25.5 257 33-315 1-258 (262)
3 PLN02366 spermidine synthase 100.0 8.4E-57 1.8E-61 427.0 29.6 283 28-315 12-304 (308)
4 PRK00811 spermidine synthase; 100.0 1.2E-56 2.6E-61 422.8 30.0 278 31-314 2-283 (283)
5 COG0421 SpeE Spermidine syntha 100.0 3E-55 6.5E-60 410.2 27.0 277 31-314 2-281 (282)
6 TIGR00417 speE spermidine synt 100.0 2.9E-51 6.4E-56 383.9 28.1 268 34-308 1-270 (270)
7 PF01564 Spermine_synth: Sperm 100.0 1.2E-50 2.5E-55 374.6 26.6 234 33-271 1-239 (246)
8 PRK03612 spermidine synthase; 100.0 7.9E-47 1.7E-51 382.9 24.0 281 34-330 223-511 (521)
9 PRK01581 speE spermidine synth 100.0 3.3E-45 7.2E-50 350.0 25.2 223 47-275 94-319 (374)
10 KOG1562 Spermidine synthase [A 100.0 1.5E-44 3.3E-49 330.9 14.6 278 29-315 40-333 (337)
11 COG4262 Predicted spermidine s 100.0 6.7E-44 1.5E-48 333.9 18.3 270 42-328 227-500 (508)
12 PRK04457 spermidine synthase; 100.0 1.4E-28 3E-33 229.6 24.7 215 55-285 11-233 (262)
13 COG2521 Predicted archaeal met 99.7 2.5E-16 5.5E-21 141.1 15.1 168 73-247 102-271 (287)
14 PF12847 Methyltransf_18: Meth 99.6 7.6E-15 1.7E-19 118.4 9.3 109 106-222 2-111 (112)
15 PF13659 Methyltransf_26: Meth 99.5 1.3E-13 2.8E-18 112.2 9.4 110 107-221 2-114 (117)
16 COG4123 Predicted O-methyltran 99.5 2.7E-12 6E-17 117.9 17.0 130 104-244 43-185 (248)
17 PRK00107 gidB 16S rRNA methylt 99.4 2.4E-12 5.1E-17 114.5 14.8 142 104-269 44-186 (187)
18 PF05175 MTS: Methyltransferas 99.4 2.3E-13 4.9E-18 119.0 8.1 129 105-251 31-160 (170)
19 COG4122 Predicted O-methyltran 99.4 9.8E-12 2.1E-16 112.5 16.4 105 104-221 58-165 (219)
20 PRK00121 trmB tRNA (guanine-N( 99.4 7.4E-12 1.6E-16 112.6 15.1 130 105-245 40-173 (202)
21 TIGR00091 tRNA (guanine-N(7)-) 99.4 8E-12 1.7E-16 111.6 15.1 129 105-244 16-148 (194)
22 PF01596 Methyltransf_3: O-met 99.4 3.7E-12 8E-17 114.8 12.8 105 104-221 44-154 (205)
23 PLN02781 Probable caffeoyl-CoA 99.4 1.3E-11 2.8E-16 113.5 16.2 104 104-220 67-176 (234)
24 PLN02476 O-methyltransferase 99.4 1.9E-11 4.2E-16 114.6 16.3 105 104-221 117-227 (278)
25 TIGR02469 CbiT precorrin-6Y C5 99.4 6E-12 1.3E-16 102.7 10.4 104 105-222 19-122 (124)
26 KOG2352 Predicted spermine/spe 99.4 1.3E-12 2.7E-17 128.8 7.4 170 90-272 273-458 (482)
27 PRK14966 unknown domain/N5-glu 99.3 4.8E-11 1E-15 117.3 18.3 189 59-269 210-418 (423)
28 TIGR00138 gidB 16S rRNA methyl 99.3 1.3E-11 2.8E-16 109.3 13.0 102 105-223 42-143 (181)
29 PRK08287 cobalt-precorrin-6Y C 99.3 3.9E-11 8.5E-16 106.2 16.0 124 104-250 30-154 (187)
30 PRK00377 cbiT cobalt-precorrin 99.3 5.9E-11 1.3E-15 106.2 16.6 131 104-253 39-170 (198)
31 TIGR03533 L3_gln_methyl protei 99.3 3.1E-11 6.7E-16 114.1 15.2 113 105-223 121-252 (284)
32 PRK15001 SAM-dependent 23S rib 99.3 1.2E-11 2.6E-16 120.8 12.8 131 106-250 229-359 (378)
33 COG2242 CobL Precorrin-6B meth 99.3 4.3E-11 9.4E-16 105.0 14.4 131 93-246 23-153 (187)
34 COG2813 RsmC 16S RNA G1207 met 99.3 2.1E-11 4.7E-16 114.3 12.6 125 106-251 159-286 (300)
35 PF13847 Methyltransf_31: Meth 99.3 6.3E-12 1.4E-16 107.5 8.0 106 105-222 3-110 (152)
36 PRK15128 23S rRNA m(5)C1962 me 99.3 5.7E-11 1.2E-15 117.2 15.8 139 105-250 220-366 (396)
37 PRK01544 bifunctional N5-gluta 99.3 7.9E-11 1.7E-15 119.7 17.1 188 59-268 71-305 (506)
38 TIGR00536 hemK_fam HemK family 99.3 2.4E-10 5.2E-15 108.0 19.1 145 71-223 81-245 (284)
39 PRK11805 N5-glutamine S-adenos 99.3 7E-11 1.5E-15 112.9 15.4 112 106-223 134-264 (307)
40 PRK09328 N5-glutamine S-adenos 99.3 2.2E-10 4.7E-15 107.1 18.1 113 104-223 107-239 (275)
41 COG2890 HemK Methylase of poly 99.3 1.7E-10 3.7E-15 108.9 16.8 142 71-223 79-239 (280)
42 PRK00517 prmA ribosomal protei 99.3 2.7E-10 5.8E-15 105.7 17.0 131 104-269 118-249 (250)
43 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.8E-10 6E-15 102.2 16.4 145 62-222 12-159 (199)
44 PRK14121 tRNA (guanine-N(7)-)- 99.3 1E-10 2.2E-15 114.2 14.7 128 105-243 122-250 (390)
45 TIGR03534 RF_mod_PrmC protein- 99.2 2.9E-10 6.3E-15 104.6 16.6 113 104-223 86-218 (251)
46 PRK07402 precorrin-6B methylas 99.2 3.3E-10 7.1E-15 101.1 15.8 104 104-222 39-142 (196)
47 PRK11036 putative S-adenosyl-L 99.2 6.4E-11 1.4E-15 110.0 10.8 106 104-221 43-148 (255)
48 PLN02589 caffeoyl-CoA O-methyl 99.2 1.2E-10 2.5E-15 107.9 12.3 105 104-221 78-189 (247)
49 COG1092 Predicted SAM-dependen 99.2 1.6E-10 3.5E-15 113.0 13.8 137 105-248 217-361 (393)
50 PRK09489 rsmC 16S ribosomal RN 99.2 1.8E-10 3.8E-15 111.7 13.5 126 106-251 197-323 (342)
51 PRK15451 tRNA cmo(5)U34 methyl 99.2 8.6E-11 1.9E-15 108.8 10.2 108 104-222 55-164 (247)
52 TIGR00406 prmA ribosomal prote 99.2 3.5E-10 7.6E-15 107.1 14.5 121 105-248 159-279 (288)
53 PRK11783 rlmL 23S rRNA m(2)G24 99.2 2.3E-10 5E-15 120.6 14.4 116 105-224 538-658 (702)
54 TIGR03704 PrmC_rel_meth putati 99.2 6.1E-10 1.3E-14 103.5 15.6 123 106-243 87-230 (251)
55 PRK14967 putative methyltransf 99.2 8E-10 1.7E-14 100.7 16.1 108 105-221 36-158 (223)
56 PRK01683 trans-aconitate 2-met 99.2 1.3E-10 2.8E-15 107.8 10.9 101 104-222 30-130 (258)
57 PRK14103 trans-aconitate 2-met 99.2 1.2E-10 2.6E-15 108.2 10.3 99 104-222 28-126 (255)
58 COG2519 GCD14 tRNA(1-methylade 99.2 2.3E-10 4.9E-15 104.8 11.7 125 104-251 93-219 (256)
59 PLN02672 methionine S-methyltr 99.2 8.2E-10 1.8E-14 119.6 17.6 174 72-253 86-304 (1082)
60 TIGR00537 hemK_rel_arch HemK-r 99.2 5.6E-10 1.2E-14 98.1 13.3 124 104-244 18-156 (179)
61 PLN03075 nicotianamine synthas 99.2 2.3E-10 4.9E-15 108.1 11.4 108 105-222 123-233 (296)
62 COG4106 Tam Trans-aconitate me 99.1 1.9E-10 4E-15 102.7 9.5 111 91-222 19-129 (257)
63 PF06325 PrmA: Ribosomal prote 99.1 1E-10 2.2E-15 110.9 8.2 135 104-269 160-294 (295)
64 PF13649 Methyltransf_25: Meth 99.1 6.4E-11 1.4E-15 94.3 5.8 96 109-216 1-101 (101)
65 PF08241 Methyltransf_11: Meth 99.1 9.9E-11 2.1E-15 90.6 6.6 95 110-220 1-95 (95)
66 COG2226 UbiE Methylase involve 99.1 4.4E-10 9.6E-15 103.2 11.6 106 104-221 50-155 (238)
67 TIGR02752 MenG_heptapren 2-hep 99.1 3.5E-10 7.7E-15 103.0 11.0 107 104-222 44-151 (231)
68 COG0742 N6-adenine-specific me 99.1 1.4E-09 3E-14 95.9 14.2 149 63-223 2-155 (187)
69 PRK14902 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 109.3 15.9 135 104-247 249-400 (444)
70 TIGR00080 pimt protein-L-isoas 99.1 2.5E-10 5.5E-15 103.4 9.9 102 104-223 76-178 (215)
71 PRK13944 protein-L-isoaspartat 99.1 3E-10 6.5E-15 102.3 10.2 101 105-222 72-173 (205)
72 COG2264 PrmA Ribosomal protein 99.1 5.4E-10 1.2E-14 105.4 12.0 137 104-268 161-298 (300)
73 PF03602 Cons_hypoth95: Conser 99.1 2.4E-10 5.3E-15 101.3 9.0 109 105-223 42-154 (183)
74 PLN02244 tocopherol O-methyltr 99.1 3.3E-10 7.1E-15 109.8 10.3 106 104-221 117-222 (340)
75 smart00828 PKS_MT Methyltransf 99.1 2.6E-10 5.5E-15 103.5 8.5 104 107-222 1-104 (224)
76 PF01209 Ubie_methyltran: ubiE 99.1 1.8E-10 3.9E-15 105.9 7.2 106 104-221 46-152 (233)
77 TIGR00095 RNA methyltransferas 99.1 1E-09 2.2E-14 97.7 11.8 107 105-222 49-159 (189)
78 PRK04266 fibrillarin; Provisio 99.1 3.7E-09 8E-14 96.8 15.7 130 104-248 71-206 (226)
79 PLN02233 ubiquinone biosynthes 99.1 6.1E-10 1.3E-14 104.0 10.6 109 104-221 72-181 (261)
80 PRK11207 tellurite resistance 99.1 5.1E-10 1.1E-14 100.2 9.7 103 105-220 30-132 (197)
81 TIGR00740 methyltransferase, p 99.1 7.8E-10 1.7E-14 101.7 11.0 108 104-222 52-161 (239)
82 COG2227 UbiG 2-polyprenyl-3-me 99.1 4.6E-10 9.9E-15 102.0 9.0 102 105-222 59-161 (243)
83 PRK13942 protein-L-isoaspartat 99.1 6.4E-10 1.4E-14 100.8 9.9 102 104-223 75-177 (212)
84 PF02390 Methyltransf_4: Putat 99.1 1.2E-09 2.6E-14 97.8 11.5 126 108-244 20-149 (195)
85 PLN02396 hexaprenyldihydroxybe 99.1 6.7E-10 1.5E-14 106.7 10.5 103 106-222 132-235 (322)
86 PF10672 Methyltrans_SAM: S-ad 99.1 1.8E-09 4E-14 101.8 12.6 114 105-225 123-241 (286)
87 PRK10901 16S rRNA methyltransf 99.1 6.1E-09 1.3E-13 104.0 17.0 115 104-224 243-374 (427)
88 COG2518 Pcm Protein-L-isoaspar 99.0 1.3E-09 2.8E-14 97.6 10.6 100 104-223 71-170 (209)
89 TIGR00438 rrmJ cell division p 99.0 2.7E-09 5.9E-14 94.6 12.3 127 104-252 31-170 (188)
90 PRK14903 16S rRNA methyltransf 99.0 5.4E-09 1.2E-13 104.4 15.8 136 104-249 236-389 (431)
91 TIGR00446 nop2p NOL1/NOP2/sun 99.0 6.7E-09 1.5E-13 97.2 15.4 135 105-249 71-222 (264)
92 TIGR02072 BioC biotin biosynth 99.0 1.7E-09 3.6E-14 98.2 10.5 103 104-222 33-135 (240)
93 PHA03411 putative methyltransf 99.0 3.5E-09 7.6E-14 98.9 12.7 109 105-225 64-187 (279)
94 PF02353 CMAS: Mycolic acid cy 99.0 1E-09 2.2E-14 103.2 9.3 105 104-222 61-166 (273)
95 PRK14904 16S rRNA methyltransf 99.0 5.7E-09 1.2E-13 104.7 15.2 133 105-248 250-399 (445)
96 PRK14968 putative methyltransf 99.0 1E-08 2.2E-13 89.9 14.6 112 104-223 22-149 (188)
97 PRK10258 biotin biosynthesis p 99.0 2.5E-09 5.4E-14 98.9 10.8 99 105-222 42-140 (251)
98 PF08242 Methyltransf_12: Meth 99.0 7.4E-11 1.6E-15 93.3 0.4 98 110-218 1-99 (99)
99 COG2230 Cfa Cyclopropane fatty 99.0 2.2E-09 4.8E-14 100.5 10.2 105 104-222 71-176 (283)
100 PRK14901 16S rRNA methyltransf 99.0 1.1E-08 2.3E-13 102.4 15.8 137 104-249 251-407 (434)
101 TIGR00477 tehB tellurite resis 99.0 2.3E-09 4.9E-14 95.9 9.8 102 105-220 30-131 (195)
102 PTZ00098 phosphoethanolamine N 99.0 1.9E-09 4.1E-14 100.9 9.5 105 104-222 51-156 (263)
103 PRK11188 rrmJ 23S rRNA methylt 99.0 3.6E-09 7.8E-14 95.7 10.7 127 104-252 50-189 (209)
104 PHA03412 putative methyltransf 99.0 3.9E-09 8.5E-14 96.5 10.5 103 105-220 49-160 (241)
105 PRK11873 arsM arsenite S-adeno 99.0 3.8E-09 8.3E-14 98.9 10.8 106 104-221 76-182 (272)
106 PF08704 GCD14: tRNA methyltra 99.0 5.1E-09 1.1E-13 96.8 11.3 129 104-253 39-172 (247)
107 PTZ00146 fibrillarin; Provisio 99.0 3.3E-08 7.1E-13 93.2 16.5 151 104-271 131-288 (293)
108 TIGR01177 conserved hypothetic 98.9 3.6E-09 7.9E-14 102.0 10.0 111 104-222 181-294 (329)
109 TIGR00563 rsmB ribosomal RNA s 98.9 2E-08 4.3E-13 100.2 15.5 136 105-248 238-390 (426)
110 COG0220 Predicted S-adenosylme 98.9 1.2E-08 2.6E-13 93.3 12.3 111 107-222 50-164 (227)
111 PRK12335 tellurite resistance 98.9 4.4E-09 9.5E-14 99.6 9.4 103 104-220 119-221 (287)
112 PLN02336 phosphoethanolamine N 98.9 5.9E-09 1.3E-13 105.2 10.7 105 104-222 265-369 (475)
113 smart00650 rADc Ribosomal RNA 98.9 1E-08 2.2E-13 89.4 10.8 101 105-223 13-114 (169)
114 PF01135 PCMT: Protein-L-isoas 98.9 4.5E-09 9.7E-14 95.1 8.7 113 90-223 60-173 (209)
115 PRK00312 pcm protein-L-isoaspa 98.9 6.9E-09 1.5E-13 93.6 9.9 100 104-223 77-176 (212)
116 PRK00216 ubiE ubiquinone/menaq 98.9 7.2E-09 1.6E-13 94.2 10.1 106 105-221 51-157 (239)
117 PRK08317 hypothetical protein; 98.9 6.7E-09 1.4E-13 94.0 9.8 106 104-222 18-124 (241)
118 PRK06922 hypothetical protein; 98.9 7.2E-09 1.6E-13 106.6 11.0 112 105-222 418-537 (677)
119 PLN02490 MPBQ/MSBQ methyltrans 98.9 7.4E-09 1.6E-13 100.0 10.5 131 105-250 113-254 (340)
120 PRK03522 rumB 23S rRNA methylu 98.9 1.9E-08 4.2E-13 96.4 13.2 105 105-225 173-277 (315)
121 PRK13943 protein-L-isoaspartat 98.9 1.9E-08 4.1E-13 96.7 12.7 101 104-222 79-180 (322)
122 cd02440 AdoMet_MTases S-adenos 98.9 1.5E-08 3.2E-13 78.0 9.7 103 108-221 1-103 (107)
123 TIGR01934 MenG_MenH_UbiE ubiqu 98.9 1.1E-08 2.3E-13 92.1 10.1 104 104-221 38-142 (223)
124 PRK04338 N(2),N(2)-dimethylgua 98.9 1.5E-08 3.2E-13 99.6 11.7 100 107-222 59-158 (382)
125 TIGR02085 meth_trns_rumB 23S r 98.9 2.4E-08 5.2E-13 98.0 13.1 103 105-223 233-335 (374)
126 PF05401 NodS: Nodulation prot 98.9 3.1E-08 6.7E-13 87.9 12.3 132 104-253 42-180 (201)
127 PRK13168 rumA 23S rRNA m(5)U19 98.9 3.7E-08 8E-13 98.8 14.1 103 105-224 297-402 (443)
128 TIGR02716 C20_methyl_CrtF C-20 98.9 1.2E-08 2.7E-13 97.2 10.1 106 104-221 148-253 (306)
129 PRK11705 cyclopropane fatty ac 98.9 1.3E-08 2.8E-13 100.2 10.5 101 104-222 166-267 (383)
130 PRK15068 tRNA mo(5)U34 methylt 98.9 2.1E-08 4.5E-13 96.5 11.7 104 105-221 122-225 (322)
131 COG2263 Predicted RNA methylas 98.8 2.4E-08 5.2E-13 87.8 10.5 100 105-221 45-144 (198)
132 TIGR03587 Pse_Me-ase pseudamin 98.8 1.3E-08 2.9E-13 91.7 9.2 130 104-250 42-178 (204)
133 KOG1271 Methyltransferases [Ge 98.8 2.7E-08 5.9E-13 86.8 10.1 148 105-268 67-221 (227)
134 PRK05134 bifunctional 3-demeth 98.8 2.7E-08 5.8E-13 90.8 10.7 104 105-222 48-151 (233)
135 TIGR00452 methyltransferase, p 98.8 3.9E-08 8.4E-13 94.2 12.0 105 105-222 121-225 (314)
136 PRK11088 rrmA 23S rRNA methylt 98.8 2E-08 4.2E-13 94.3 9.9 94 105-222 85-181 (272)
137 KOG2899 Predicted methyltransf 98.8 2.3E-08 4.9E-13 90.8 9.4 110 105-221 58-208 (288)
138 TIGR00308 TRM1 tRNA(guanine-26 98.8 4.2E-08 9.1E-13 96.1 12.1 100 107-221 46-146 (374)
139 KOG1270 Methyltransferases [Co 98.8 5.9E-09 1.3E-13 95.7 5.6 102 106-222 90-195 (282)
140 TIGR00479 rumA 23S rRNA (uraci 98.8 1E-07 2.2E-12 95.3 14.8 102 105-222 292-396 (431)
141 TIGR01983 UbiG ubiquinone bios 98.8 5.3E-08 1.1E-12 88.1 10.3 105 105-222 45-149 (224)
142 KOG2904 Predicted methyltransf 98.7 1.8E-07 3.8E-12 86.5 13.1 117 103-223 146-286 (328)
143 TIGR02143 trmA_only tRNA (urac 98.7 3.8E-07 8.3E-12 88.9 16.5 100 106-223 198-312 (353)
144 PRK05031 tRNA (uracil-5-)-meth 98.7 4.4E-07 9.6E-12 88.7 16.8 100 106-223 207-321 (362)
145 TIGR03438 probable methyltrans 98.7 5.8E-08 1.3E-12 92.6 9.8 111 104-222 62-177 (301)
146 PLN02336 phosphoethanolamine N 98.7 4.7E-08 1E-12 98.7 9.6 104 105-221 37-141 (475)
147 PF02475 Met_10: Met-10+ like- 98.7 2.7E-08 5.9E-13 89.3 6.4 100 104-219 100-199 (200)
148 KOG1540 Ubiquinone biosynthesi 98.7 1E-07 2.2E-12 87.3 10.1 107 105-220 100-212 (296)
149 PF03848 TehB: Tellurite resis 98.7 5.4E-08 1.2E-12 86.7 8.0 104 104-221 29-132 (192)
150 TIGR03840 TMPT_Se_Te thiopurin 98.7 6.6E-08 1.4E-12 87.8 8.6 110 104-220 33-150 (213)
151 KOG1663 O-methyltransferase [S 98.7 6.1E-07 1.3E-11 81.1 14.6 149 104-269 72-236 (237)
152 TIGR02021 BchM-ChlM magnesium 98.7 8.4E-08 1.8E-12 86.9 8.9 102 104-220 54-156 (219)
153 PRK13255 thiopurine S-methyltr 98.6 8.4E-08 1.8E-12 87.4 8.0 107 104-217 36-150 (218)
154 KOG4300 Predicted methyltransf 98.6 9.8E-08 2.1E-12 84.9 8.0 104 106-221 77-181 (252)
155 PF13489 Methyltransf_23: Meth 98.6 8E-08 1.7E-12 81.7 7.1 95 104-222 21-115 (161)
156 PRK05785 hypothetical protein; 98.6 2.3E-07 5.1E-12 84.8 10.3 91 105-216 51-141 (226)
157 PRK11727 23S rRNA mA1618 methy 98.6 3.3E-07 7.2E-12 87.9 11.2 81 105-188 114-199 (321)
158 PRK07580 Mg-protoporphyrin IX 98.6 3.9E-07 8.4E-12 82.7 10.9 74 104-186 62-135 (230)
159 PF05891 Methyltransf_PK: AdoM 98.6 1.7E-07 3.8E-12 84.4 7.6 102 105-221 55-160 (218)
160 PRK06202 hypothetical protein; 98.6 3.8E-07 8.3E-12 83.4 9.9 103 104-221 59-165 (232)
161 smart00138 MeTrc Methyltransfe 98.5 1.2E-07 2.6E-12 88.8 6.5 110 105-221 99-241 (264)
162 PF05185 PRMT5: PRMT5 arginine 98.5 2.5E-07 5.5E-12 92.7 9.0 106 106-221 187-296 (448)
163 PRK11933 yebU rRNA (cytosine-C 98.5 2.5E-06 5.4E-11 86.0 15.5 134 105-247 113-263 (470)
164 KOG3010 Methyltransferase [Gen 98.5 1.8E-07 3.9E-12 85.0 6.6 106 103-222 31-137 (261)
165 PRK01544 bifunctional N5-gluta 98.5 2.6E-06 5.7E-11 86.9 15.4 113 105-222 347-462 (506)
166 PF07021 MetW: Methionine bios 98.5 4.9E-07 1.1E-11 80.0 8.0 72 104-187 12-84 (193)
167 PTZ00338 dimethyladenosine tra 98.5 1.5E-06 3.3E-11 82.6 11.6 100 105-221 36-136 (294)
168 PF00891 Methyltransf_2: O-met 98.5 2.6E-07 5.6E-12 84.9 6.2 97 104-221 99-198 (241)
169 PLN02585 magnesium protoporphy 98.5 2.8E-06 6.1E-11 81.5 13.4 103 105-220 144-248 (315)
170 PF08003 Methyltransf_9: Prote 98.4 1.6E-06 3.5E-11 81.8 11.0 114 89-222 102-219 (315)
171 PF09445 Methyltransf_15: RNA 98.4 5.6E-07 1.2E-11 78.1 7.1 75 108-187 2-78 (163)
172 COG2520 Predicted methyltransf 98.4 6.6E-06 1.4E-10 79.4 14.8 106 104-225 187-292 (341)
173 PF05430 Methyltransf_30: S-ad 98.4 1E-06 2.2E-11 73.3 8.0 96 156-269 26-123 (124)
174 COG2265 TrmA SAM-dependent met 98.4 4.8E-06 1E-10 83.1 12.5 104 105-224 293-398 (432)
175 COG4976 Predicted methyltransf 98.3 1.1E-07 2.4E-12 85.8 0.7 101 106-224 126-227 (287)
176 KOG1661 Protein-L-isoaspartate 98.3 1.4E-06 3E-11 77.7 7.0 119 90-223 68-194 (237)
177 PRK14896 ksgA 16S ribosomal RN 98.3 2E-06 4.3E-11 80.3 8.3 73 105-188 29-101 (258)
178 KOG3191 Predicted N6-DNA-methy 98.3 1.2E-05 2.5E-10 70.5 11.6 131 105-249 43-189 (209)
179 PRK01747 mnmC bifunctional tRN 98.3 7E-06 1.5E-10 86.4 12.0 145 106-268 58-238 (662)
180 PRK00274 ksgA 16S ribosomal RN 98.3 2.5E-06 5.4E-11 80.2 7.7 74 104-187 41-114 (272)
181 PF01170 UPF0020: Putative RNA 98.2 2.8E-06 6E-11 75.0 7.1 111 105-221 28-150 (179)
182 KOG1541 Predicted protein carb 98.2 3.7E-06 8E-11 75.6 7.5 104 106-223 51-161 (270)
183 COG1041 Predicted DNA modifica 98.2 5.8E-06 1.3E-10 79.4 9.3 122 90-222 184-310 (347)
184 TIGR02081 metW methionine bios 98.2 4.2E-06 9E-11 74.5 7.5 90 105-213 13-103 (194)
185 COG0030 KsgA Dimethyladenosine 98.2 9.3E-06 2E-10 75.5 9.8 97 106-221 31-130 (259)
186 TIGR00755 ksgA dimethyladenosi 98.2 9.3E-06 2E-10 75.4 9.8 73 104-187 28-103 (253)
187 PRK13256 thiopurine S-methyltr 98.2 7.7E-06 1.7E-10 74.8 8.9 110 104-220 42-161 (226)
188 PF10294 Methyltransf_16: Puta 98.1 1.6E-05 3.6E-10 69.7 9.4 107 104-221 44-155 (173)
189 PF02527 GidB: rRNA small subu 98.1 8E-05 1.7E-09 66.1 13.6 100 108-224 51-150 (184)
190 PRK00050 16S rRNA m(4)C1402 me 98.1 1.5E-05 3.3E-10 75.7 9.4 76 106-187 20-99 (296)
191 PF05724 TPMT: Thiopurine S-me 98.1 5.4E-06 1.2E-10 75.5 6.1 107 104-217 36-150 (218)
192 PRK10742 putative methyltransf 98.1 2.6E-05 5.7E-10 71.9 10.3 81 108-190 91-176 (250)
193 KOG1499 Protein arginine N-met 98.1 8.3E-06 1.8E-10 78.0 6.9 105 105-219 60-164 (346)
194 PF13578 Methyltransf_24: Meth 98.1 3.4E-06 7.4E-11 67.4 3.7 97 110-221 1-104 (106)
195 PF01728 FtsJ: FtsJ-like methy 98.0 7.7E-06 1.7E-10 71.9 5.5 137 93-252 11-163 (181)
196 PF03059 NAS: Nicotianamine sy 98.0 4.4E-05 9.6E-10 71.7 9.8 108 105-222 120-230 (276)
197 PF05958 tRNA_U5-meth_tr: tRNA 98.0 1.7E-05 3.6E-10 77.4 7.1 114 105-243 196-324 (352)
198 COG3963 Phospholipid N-methylt 98.0 6.9E-05 1.5E-09 64.8 10.0 103 105-221 48-155 (194)
199 KOG2940 Predicted methyltransf 98.0 1.1E-05 2.5E-10 72.9 5.4 99 106-221 73-173 (325)
200 PF05219 DREV: DREV methyltran 97.9 6.2E-05 1.3E-09 69.7 10.0 93 105-221 94-187 (265)
201 TIGR02987 met_A_Alw26 type II 97.9 4E-05 8.6E-10 78.6 9.5 80 105-188 31-122 (524)
202 PF02005 TRM: N2,N2-dimethylgu 97.9 3.2E-05 6.8E-10 76.1 8.4 104 106-222 50-154 (377)
203 PF02384 N6_Mtase: N-6 DNA Met 97.9 1.2E-05 2.7E-10 76.6 5.2 138 105-246 46-206 (311)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.9 6.3E-05 1.4E-09 79.8 9.7 81 106-189 191-314 (702)
205 COG0144 Sun tRNA and rRNA cyto 97.9 0.00035 7.7E-09 68.2 14.2 143 99-250 149-312 (355)
206 KOG3420 Predicted RNA methylas 97.8 2.4E-05 5.3E-10 66.1 4.9 91 105-206 48-138 (185)
207 PF01861 DUF43: Protein of unk 97.8 0.00029 6.3E-09 64.6 12.3 98 105-216 44-142 (243)
208 PF01269 Fibrillarin: Fibrilla 97.8 0.00032 6.9E-09 63.6 12.2 144 104-268 72-226 (229)
209 KOG1500 Protein arginine N-met 97.8 0.00014 3E-09 69.3 10.0 102 106-222 178-282 (517)
210 PF03291 Pox_MCEL: mRNA cappin 97.8 3E-05 6.5E-10 74.9 5.8 113 105-222 62-186 (331)
211 KOG1709 Guanidinoacetate methy 97.8 0.00019 4.1E-09 64.5 10.0 118 88-221 87-205 (271)
212 COG1867 TRM1 N2,N2-dimethylgua 97.8 0.00014 3E-09 70.3 9.7 102 106-222 53-154 (380)
213 TIGR00478 tly hemolysin TlyA f 97.8 0.00018 3.9E-09 66.0 10.0 53 89-144 61-113 (228)
214 PLN02232 ubiquinone biosynthes 97.7 7.6E-05 1.7E-09 64.5 6.2 80 133-221 1-80 (160)
215 KOG1975 mRNA cap methyltransfe 97.7 0.00016 3.5E-09 68.6 8.4 115 104-222 116-237 (389)
216 KOG0820 Ribosomal RNA adenine 97.7 0.00013 2.9E-09 67.6 7.6 78 104-189 57-134 (315)
217 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00061 1.3E-08 64.5 12.4 137 105-250 85-243 (283)
218 KOG2915 tRNA(1-methyladenosine 97.7 0.00037 8.1E-09 64.7 10.4 126 104-250 104-233 (314)
219 COG4076 Predicted RNA methylas 97.7 4.1E-05 8.9E-10 67.4 4.0 100 107-221 34-134 (252)
220 PF12147 Methyltransf_20: Puta 97.6 0.00081 1.8E-08 63.3 11.4 128 103-243 133-265 (311)
221 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00013 2.7E-09 68.3 6.0 76 105-188 30-107 (262)
222 COG0357 GidB Predicted S-adeno 97.6 0.0012 2.5E-08 60.0 11.9 133 106-258 68-201 (215)
223 COG1889 NOP1 Fibrillarin-like 97.5 0.0031 6.7E-08 56.4 13.4 149 104-268 75-228 (231)
224 PRK04148 hypothetical protein; 97.4 0.00034 7.4E-09 58.8 6.5 71 104-187 15-86 (134)
225 COG0116 Predicted N6-adenine-s 97.4 0.00049 1.1E-08 67.1 8.3 110 107-222 193-344 (381)
226 KOG2361 Predicted methyltransf 97.4 0.00017 3.6E-09 65.9 3.8 106 105-221 71-182 (264)
227 PF01739 CheR: CheR methyltran 97.3 0.00069 1.5E-08 60.7 6.6 107 105-221 31-174 (196)
228 KOG3178 Hydroxyindole-O-methyl 97.2 0.00073 1.6E-08 64.9 7.0 92 106-221 178-274 (342)
229 PF07942 N2227: N2227-like pro 97.2 0.00085 1.8E-08 62.9 6.9 111 105-225 56-204 (270)
230 PF06080 DUF938: Protein of un 97.1 0.001 2.2E-08 59.8 6.3 114 104-222 23-141 (204)
231 PF04816 DUF633: Family of unk 97.1 0.0067 1.4E-07 54.8 11.6 140 109-271 1-141 (205)
232 PF08123 DOT1: Histone methyla 97.1 0.0043 9.3E-08 56.0 10.1 108 105-220 42-156 (205)
233 TIGR01444 fkbM_fam methyltrans 97.1 0.0019 4E-08 54.0 6.9 56 109-168 2-57 (143)
234 KOG2730 Methylase [General fun 97.0 0.0028 6.1E-08 57.3 8.2 78 105-187 94-174 (263)
235 cd00315 Cyt_C5_DNA_methylase C 97.0 0.014 3.1E-07 54.9 13.4 147 108-270 2-164 (275)
236 COG0293 FtsJ 23S rRNA methylas 97.0 0.0045 9.7E-08 55.7 9.3 127 104-252 44-183 (205)
237 TIGR00006 S-adenosyl-methyltra 97.0 0.0044 9.5E-08 59.2 9.3 78 105-187 20-101 (305)
238 KOG0822 Protein kinase inhibit 96.9 0.0023 5E-08 64.4 7.1 106 106-222 368-478 (649)
239 KOG1253 tRNA methyltransferase 96.9 0.0009 2E-08 66.8 4.3 105 104-222 108-216 (525)
240 PRK10611 chemotaxis methyltran 96.9 0.0015 3.3E-08 61.9 5.3 111 105-221 115-261 (287)
241 PRK11760 putative 23S rRNA C24 96.8 0.0024 5.2E-08 61.6 5.9 71 104-188 210-280 (357)
242 PF09243 Rsm22: Mitochondrial 96.6 0.0081 1.7E-07 56.6 8.4 46 105-150 33-79 (274)
243 PF05971 Methyltransf_10: Prot 96.6 0.0043 9.3E-08 59.0 6.5 79 106-188 103-187 (299)
244 KOG1562 Spermidine synthase [A 96.6 0.0016 3.5E-08 61.2 3.1 164 47-222 122-293 (337)
245 PF04445 SAM_MT: Putative SAM- 96.5 0.0021 4.6E-08 58.9 3.5 81 107-189 77-162 (234)
246 KOG2187 tRNA uracil-5-methyltr 96.5 0.0035 7.5E-08 63.0 5.2 80 104-189 382-466 (534)
247 COG0275 Predicted S-adenosylme 96.4 0.019 4.1E-07 54.4 9.1 77 106-187 24-105 (314)
248 COG2384 Predicted SAM-dependen 96.4 0.06 1.3E-06 48.9 11.8 146 104-271 15-160 (226)
249 COG0500 SmtA SAM-dependent met 96.3 0.033 7.1E-07 44.2 9.1 102 109-223 52-156 (257)
250 COG1352 CheR Methylase of chem 96.2 0.012 2.7E-07 55.2 6.9 106 105-220 96-239 (268)
251 COG1063 Tdh Threonine dehydrog 96.2 0.042 9.2E-07 53.5 11.0 98 106-222 169-269 (350)
252 PF06962 rRNA_methylase: Putat 96.1 0.018 4E-07 48.7 6.8 107 131-244 1-113 (140)
253 KOG1122 tRNA and rRNA cytosine 96.1 0.059 1.3E-06 53.2 11.0 139 103-251 238-396 (460)
254 PRK09424 pntA NAD(P) transhydr 96.0 0.048 1E-06 55.8 10.5 108 105-221 164-284 (509)
255 PF01795 Methyltransf_5: MraW 96.0 0.013 2.9E-07 56.0 5.9 78 105-187 20-102 (310)
256 COG4121 Uncharacterized conser 96.0 0.022 4.9E-07 52.8 7.1 146 107-270 60-242 (252)
257 TIGR03439 methyl_EasF probable 96.0 0.062 1.3E-06 51.8 10.3 110 104-222 75-197 (319)
258 PF13679 Methyltransf_32: Meth 95.9 0.021 4.5E-07 48.2 6.2 63 104-168 24-91 (141)
259 PF04989 CmcI: Cephalosporin h 95.9 0.011 2.4E-07 53.3 4.7 104 104-221 31-146 (206)
260 PRK05562 precorrin-2 dehydroge 95.9 0.082 1.8E-06 48.3 10.4 109 89-224 8-118 (223)
261 COG1064 AdhP Zn-dependent alco 95.9 0.06 1.3E-06 52.2 9.9 94 105-223 166-260 (339)
262 COG0286 HsdM Type I restrictio 95.7 0.074 1.6E-06 54.3 10.5 134 105-243 186-346 (489)
263 KOG1596 Fibrillarin and relate 95.7 0.1 2.2E-06 48.1 10.1 144 104-268 155-309 (317)
264 PF07091 FmrO: Ribosomal RNA m 95.7 0.036 7.9E-07 51.3 7.3 77 104-187 104-180 (251)
265 KOG3201 Uncharacterized conser 95.7 0.022 4.8E-07 49.3 5.4 108 106-221 30-139 (201)
266 PF05148 Methyltransf_8: Hypot 95.7 0.0018 3.8E-08 58.3 -1.3 87 104-221 71-157 (219)
267 PF03141 Methyltransf_29: Puta 95.7 0.026 5.7E-07 56.8 6.7 116 90-225 100-221 (506)
268 PTZ00357 methyltransferase; Pr 95.6 0.025 5.4E-07 58.9 6.4 105 108-217 703-830 (1072)
269 KOG4589 Cell division protein 95.6 0.094 2E-06 46.6 9.1 140 105-270 69-226 (232)
270 COG1568 Predicted methyltransf 95.5 0.064 1.4E-06 50.3 8.1 127 105-248 152-282 (354)
271 COG3897 Predicted methyltransf 95.5 0.013 2.8E-07 52.3 3.4 101 105-225 79-180 (218)
272 PRK11524 putative methyltransf 95.3 0.046 1E-06 51.7 6.9 65 158-223 6-81 (284)
273 PF04672 Methyltransf_19: S-ad 95.3 0.15 3.3E-06 47.7 10.0 108 105-223 68-191 (267)
274 PF11599 AviRa: RRNA methyltra 95.3 0.093 2E-06 47.5 8.1 126 90-220 39-212 (246)
275 PHA01634 hypothetical protein 95.2 0.051 1.1E-06 45.2 5.9 75 104-187 27-101 (156)
276 KOG3115 Methyltransferase-like 95.2 0.054 1.2E-06 48.7 6.4 113 107-221 62-182 (249)
277 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.17 3.7E-06 43.4 9.5 143 108-270 1-153 (157)
278 KOG0024 Sorbitol dehydrogenase 95.1 0.15 3.1E-06 49.0 9.4 100 105-220 169-271 (354)
279 COG1189 Predicted rRNA methyla 94.9 0.1 2.2E-06 47.9 7.5 83 93-187 69-153 (245)
280 PF00145 DNA_methylase: C-5 cy 94.9 0.32 6.9E-06 45.9 11.3 147 108-271 2-164 (335)
281 KOG3045 Predicted RNA methylas 94.6 0.026 5.7E-07 52.4 3.0 83 106-221 181-263 (325)
282 TIGR00675 dcm DNA-methyltransf 94.6 0.74 1.6E-05 44.2 13.0 145 109-269 1-160 (315)
283 PRK09880 L-idonate 5-dehydroge 94.6 0.28 6.1E-06 47.1 10.2 97 105-222 169-266 (343)
284 TIGR00518 alaDH alanine dehydr 94.5 0.44 9.5E-06 46.9 11.5 98 105-219 166-264 (370)
285 KOG4058 Uncharacterized conser 94.4 0.037 8.1E-07 47.2 3.2 76 91-170 57-133 (199)
286 TIGR00561 pntA NAD(P) transhyd 94.2 0.41 9E-06 49.0 10.8 106 105-219 163-281 (511)
287 PRK07502 cyclohexadienyl dehyd 94.1 3.3 7E-05 39.4 16.3 92 107-223 7-100 (307)
288 PF07279 DUF1442: Protein of u 93.8 1 2.2E-05 40.9 11.3 102 104-220 40-146 (218)
289 PF14314 Methyltrans_Mon: Viru 93.8 0.21 4.5E-06 52.5 7.7 172 105-284 322-520 (675)
290 PRK05476 S-adenosyl-L-homocyst 93.7 1.3 2.8E-05 44.4 13.1 130 105-270 211-342 (425)
291 PRK13699 putative methylase; P 93.6 0.11 2.4E-06 47.5 5.0 61 161-222 2-72 (227)
292 PRK10637 cysG siroheme synthas 93.6 0.63 1.4E-05 47.1 10.8 101 96-223 2-104 (457)
293 KOG2352 Predicted spermine/spe 93.3 0.42 9.1E-06 48.2 8.7 105 108-220 51-159 (482)
294 cd08283 FDH_like_1 Glutathione 93.3 0.6 1.3E-05 45.7 9.9 110 105-222 184-306 (386)
295 KOG1501 Arginine N-methyltrans 93.3 0.077 1.7E-06 52.7 3.4 77 108-189 69-146 (636)
296 COG0686 Ald Alanine dehydrogen 93.2 0.85 1.8E-05 43.7 10.1 98 105-219 167-265 (371)
297 KOG0821 Predicted ribosomal RN 93.0 0.077 1.7E-06 48.2 2.9 59 107-171 52-110 (326)
298 KOG3987 Uncharacterized conser 93.0 0.043 9.4E-07 49.4 1.2 94 104-221 111-206 (288)
299 TIGR03366 HpnZ_proposed putati 92.8 1.1 2.4E-05 41.7 10.4 96 105-222 120-218 (280)
300 KOG2078 tRNA modification enzy 92.7 0.38 8.2E-06 47.7 7.3 67 104-175 248-315 (495)
301 cd08230 glucose_DH Glucose deh 92.6 0.74 1.6E-05 44.3 9.3 94 105-222 172-269 (355)
302 PF00107 ADH_zinc_N: Zinc-bind 92.6 0.76 1.6E-05 37.3 8.1 87 115-222 1-89 (130)
303 PF06460 NSP13: Coronavirus NS 92.5 0.75 1.6E-05 42.9 8.5 167 89-282 43-227 (299)
304 COG5459 Predicted rRNA methyla 92.4 0.17 3.6E-06 49.1 4.4 114 105-225 113-229 (484)
305 TIGR00936 ahcY adenosylhomocys 92.4 3.5 7.5E-05 41.2 13.8 117 105-252 194-311 (406)
306 PF04378 RsmJ: Ribosomal RNA s 92.4 1 2.2E-05 41.8 9.4 123 110-249 62-188 (245)
307 KOG2198 tRNA cytosine-5-methyl 92.4 0.89 1.9E-05 44.4 9.3 116 104-224 154-298 (375)
308 PF03721 UDPG_MGDP_dh_N: UDP-g 92.4 2.5 5.5E-05 37.3 11.6 110 108-225 2-123 (185)
309 TIGR02356 adenyl_thiF thiazole 92.3 0.67 1.5E-05 41.5 8.0 34 105-138 20-54 (202)
310 PF00670 AdoHcyase_NAD: S-aden 92.3 0.87 1.9E-05 39.6 8.3 90 105-225 22-112 (162)
311 TIGR03451 mycoS_dep_FDH mycoth 92.2 0.95 2.1E-05 43.7 9.5 98 105-222 176-276 (358)
312 PF12692 Methyltransf_17: S-ad 91.8 0.28 6.1E-06 41.9 4.6 109 98-220 21-132 (160)
313 TIGR01202 bchC 2-desacetyl-2-h 91.8 0.77 1.7E-05 43.5 8.2 86 105-221 144-230 (308)
314 PF01262 AlaDh_PNT_C: Alanine 91.7 0.42 9.1E-06 41.4 5.8 104 105-219 19-136 (168)
315 PF02737 3HCDH_N: 3-hydroxyacy 91.5 1.1 2.3E-05 39.5 8.2 101 108-224 1-116 (180)
316 COG0287 TyrA Prephenate dehydr 91.5 5.2 0.00011 37.8 13.3 109 107-247 4-114 (279)
317 TIGR01470 cysG_Nterm siroheme 91.4 1.2 2.5E-05 40.2 8.5 96 99-223 2-101 (205)
318 PLN02353 probable UDP-glucose 91.2 3.9 8.6E-05 41.6 13.0 140 108-258 3-158 (473)
319 cd08281 liver_ADH_like1 Zinc-d 91.1 1.2 2.7E-05 43.2 9.1 98 105-222 191-290 (371)
320 PRK12475 thiamine/molybdopteri 91.1 0.92 2E-05 44.1 8.1 35 105-139 23-58 (338)
321 PF01555 N6_N4_Mtase: DNA meth 91.0 0.41 8.9E-06 42.5 5.2 43 103-147 189-231 (231)
322 PF10354 DUF2431: Domain of un 91.0 0.31 6.7E-06 42.5 4.2 110 110-221 1-124 (166)
323 PRK05808 3-hydroxybutyryl-CoA 91.0 1.2 2.6E-05 41.7 8.6 102 107-224 4-120 (282)
324 PRK09260 3-hydroxybutyryl-CoA 90.8 0.9 2E-05 42.8 7.6 102 107-223 2-118 (288)
325 cd05188 MDR Medium chain reduc 90.7 1.6 3.4E-05 39.4 8.9 98 104-222 133-232 (271)
326 PF03269 DUF268: Caenorhabditi 90.4 0.55 1.2E-05 40.8 5.0 104 106-222 2-111 (177)
327 PRK11064 wecC UDP-N-acetyl-D-m 90.3 3.7 8.1E-05 41.0 11.8 105 107-223 4-120 (415)
328 cd08239 THR_DH_like L-threonin 90.2 3.3 7E-05 39.4 11.0 97 105-222 163-262 (339)
329 PF02826 2-Hacid_dh_C: D-isome 90.2 7.8 0.00017 33.7 12.5 108 105-243 35-143 (178)
330 PRK07530 3-hydroxybutyryl-CoA 90.2 1.5 3.2E-05 41.4 8.4 103 106-224 4-121 (292)
331 cd08285 NADP_ADH NADP(H)-depen 90.2 2.1 4.6E-05 41.0 9.7 98 104-221 165-265 (351)
332 PLN02740 Alcohol dehydrogenase 90.2 3.1 6.7E-05 40.6 10.9 97 105-221 198-299 (381)
333 PRK10309 galactitol-1-phosphat 90.1 2 4.4E-05 41.1 9.4 98 105-221 160-259 (347)
334 PRK08644 thiamine biosynthesis 89.9 1.6 3.5E-05 39.4 8.1 34 105-138 27-61 (212)
335 COG2961 ComJ Protein involved 89.9 2.9 6.2E-05 38.9 9.5 124 106-246 89-215 (279)
336 PRK11524 putative methyltransf 89.9 0.72 1.6E-05 43.5 6.0 45 104-150 207-251 (284)
337 cd08293 PTGR2 Prostaglandin re 89.8 1.8 3.9E-05 41.2 8.8 95 107-221 156-253 (345)
338 KOG1269 SAM-dependent methyltr 89.6 0.5 1.1E-05 46.4 4.8 103 106-221 111-214 (364)
339 PRK08293 3-hydroxybutyryl-CoA 89.5 0.64 1.4E-05 43.8 5.4 102 107-223 4-121 (287)
340 PRK05597 molybdopterin biosynt 89.4 1.2 2.7E-05 43.4 7.4 35 105-139 27-62 (355)
341 PRK08328 hypothetical protein; 89.2 1.7 3.6E-05 39.9 7.7 35 105-139 26-61 (231)
342 PRK06130 3-hydroxybutyryl-CoA 89.2 2.8 6.1E-05 39.7 9.6 102 106-222 4-115 (311)
343 PRK07066 3-hydroxybutyryl-CoA 89.1 2.7 5.8E-05 40.6 9.3 103 106-223 7-120 (321)
344 PRK08762 molybdopterin biosynt 88.9 1.3 2.8E-05 43.6 7.2 34 105-138 134-168 (376)
345 KOG2798 Putative trehalase [Ca 88.9 0.41 8.9E-06 45.8 3.5 109 106-225 151-298 (369)
346 TIGR03201 dearomat_had 6-hydro 88.8 3.7 8E-05 39.4 10.2 98 105-222 166-272 (349)
347 cd08237 ribitol-5-phosphate_DH 88.7 3.3 7.1E-05 39.8 9.8 92 105-222 163-256 (341)
348 cd05298 GH4_GlvA_pagL_like Gly 88.6 4.2 9.1E-05 41.0 10.7 42 108-150 2-54 (437)
349 PF10237 N6-adenineMlase: Prob 88.6 3.4 7.3E-05 35.9 8.7 95 104-221 24-122 (162)
350 cd08254 hydroxyacyl_CoA_DH 6-h 88.5 2.8 6.1E-05 39.4 9.1 97 104-221 164-262 (338)
351 PF02254 TrkA_N: TrkA-N domain 88.4 2.7 5.7E-05 33.4 7.6 91 109-222 1-96 (116)
352 PRK06719 precorrin-2 dehydroge 88.2 0.76 1.7E-05 39.6 4.5 78 95-189 2-81 (157)
353 cd01487 E1_ThiF_like E1_ThiF_l 88.2 2.2 4.8E-05 37.3 7.5 32 108-139 1-33 (174)
354 COG0270 Dcm Site-specific DNA 88.1 1.8 3.8E-05 41.8 7.4 128 106-248 3-142 (328)
355 cd08238 sorbose_phosphate_red 88.1 5.1 0.00011 39.6 10.9 103 106-222 176-288 (410)
356 TIGR02355 moeB molybdopterin s 88.0 1.8 3.9E-05 39.9 7.1 35 106-140 24-59 (240)
357 cd01492 Aos1_SUMO Ubiquitin ac 87.8 3 6.5E-05 37.2 8.3 34 106-139 21-55 (197)
358 PRK12749 quinate/shikimate deh 87.8 7.5 0.00016 36.9 11.4 61 78-140 98-159 (288)
359 PRK07688 thiamine/molybdopteri 87.8 2.8 6.2E-05 40.7 8.7 34 105-138 23-57 (339)
360 cd08232 idonate-5-DH L-idonate 87.8 3.7 8E-05 38.9 9.4 96 105-221 165-261 (339)
361 cd05197 GH4_glycoside_hydrolas 87.7 8.7 0.00019 38.6 12.3 43 108-151 2-55 (425)
362 PRK03562 glutathione-regulated 87.7 7.3 0.00016 41.1 12.2 95 106-222 400-498 (621)
363 TIGR02822 adh_fam_2 zinc-bindi 87.6 4.6 0.0001 38.6 10.0 87 105-221 165-253 (329)
364 cd05297 GH4_alpha_glucosidase_ 87.6 1.7 3.7E-05 43.5 7.2 75 108-187 2-83 (423)
365 PRK07340 ornithine cyclodeamin 87.6 18 0.00039 34.5 13.9 113 62-189 84-199 (304)
366 cd08294 leukotriene_B4_DH_like 87.5 4.3 9.4E-05 38.1 9.7 95 105-221 143-240 (329)
367 cd01485 E1-1_like Ubiquitin ac 87.5 3.4 7.3E-05 36.9 8.4 34 106-139 19-53 (198)
368 cd05278 FDH_like Formaldehyde 87.3 5.3 0.00011 37.8 10.2 97 105-221 167-266 (347)
369 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.9 3.6 7.7E-05 42.3 9.2 104 105-224 4-122 (503)
370 PRK15116 sulfur acceptor prote 86.8 4.6 0.0001 38.0 9.2 35 105-139 29-64 (268)
371 TIGR02825 B4_12hDH leukotriene 86.8 9 0.0002 36.1 11.4 96 104-221 137-236 (325)
372 PLN02827 Alcohol dehydrogenase 86.7 6.8 0.00015 38.3 10.8 98 104-221 192-294 (378)
373 PRK12549 shikimate 5-dehydroge 86.7 9.8 0.00021 36.0 11.5 100 78-187 101-201 (284)
374 PLN02494 adenosylhomocysteinas 86.5 14 0.0003 37.7 12.9 117 105-252 253-371 (477)
375 cd00755 YgdL_like Family of ac 86.3 3.7 8.1E-05 37.7 8.1 34 106-139 11-45 (231)
376 TIGR03376 glycerol3P_DH glycer 86.2 12 0.00026 36.4 12.0 146 108-271 1-168 (342)
377 cd00757 ThiF_MoeB_HesA_family 86.1 3.1 6.8E-05 37.8 7.5 34 106-139 21-55 (228)
378 COG4017 Uncharacterized protei 86.1 1.2 2.6E-05 39.8 4.5 86 103-221 42-128 (254)
379 PF02719 Polysacc_synt_2: Poly 86.0 2.6 5.7E-05 40.1 7.1 75 109-187 1-86 (293)
380 cd05213 NAD_bind_Glutamyl_tRNA 85.9 9.8 0.00021 36.3 11.2 96 105-225 177-275 (311)
381 cd08277 liver_alcohol_DH_like 85.9 9.4 0.0002 36.9 11.3 99 104-222 183-286 (365)
382 PRK07819 3-hydroxybutyryl-CoA 85.6 4.8 0.0001 38.0 8.8 101 107-223 6-122 (286)
383 KOG1099 SAM-dependent methyltr 85.6 4 8.6E-05 37.6 7.7 138 105-270 41-205 (294)
384 PLN03154 putative allyl alcoho 85.4 6.2 0.00013 38.0 9.7 96 105-221 158-257 (348)
385 PRK06718 precorrin-2 dehydroge 85.3 11 0.00023 33.9 10.4 76 98-189 2-81 (202)
386 COG0569 TrkA K+ transport syst 85.3 4.1 8.9E-05 37.1 7.9 71 107-188 1-76 (225)
387 PF02636 Methyltransf_28: Puta 85.2 0.62 1.4E-05 43.1 2.5 46 106-151 19-72 (252)
388 PRK09496 trkA potassium transp 85.2 5.8 0.00013 39.5 9.6 73 105-188 230-307 (453)
389 PRK10458 DNA cytosine methylas 85.2 3.3 7.1E-05 42.1 7.8 131 106-248 88-254 (467)
390 TIGR02818 adh_III_F_hyde S-(hy 85.1 11 0.00024 36.6 11.3 44 105-148 185-229 (368)
391 PRK12439 NAD(P)H-dependent gly 85.1 22 0.00047 34.4 13.3 133 104-258 5-143 (341)
392 PRK06035 3-hydroxyacyl-CoA deh 85.1 6 0.00013 37.2 9.2 100 107-222 4-121 (291)
393 PLN02545 3-hydroxybutyryl-CoA 85.0 5 0.00011 37.8 8.6 102 106-223 4-120 (295)
394 PF13241 NAD_binding_7: Putati 84.9 4.4 9.6E-05 32.0 7.0 90 104-225 5-94 (103)
395 KOG2671 Putative RNA methylase 84.7 0.53 1.1E-05 45.6 1.7 81 104-188 207-294 (421)
396 cd08278 benzyl_alcohol_DH Benz 84.7 13 0.00029 35.8 11.7 98 105-222 186-285 (365)
397 PF01488 Shikimate_DH: Shikima 84.7 12 0.00027 30.9 10.0 84 105-206 11-97 (135)
398 PRK13699 putative methylase; P 84.5 2.5 5.5E-05 38.6 6.1 46 104-151 162-207 (227)
399 cd08295 double_bond_reductase_ 84.4 9 0.0002 36.4 10.2 97 104-221 150-250 (338)
400 cd00401 AdoHcyase S-adenosyl-L 84.0 8.5 0.00018 38.5 10.0 89 105-224 201-290 (413)
401 cd05285 sorbitol_DH Sorbitol d 84.0 9.3 0.0002 36.3 10.1 98 104-221 161-264 (343)
402 PRK08268 3-hydroxy-acyl-CoA de 83.9 5.8 0.00013 40.7 9.1 104 105-224 6-124 (507)
403 PRK00066 ldh L-lactate dehydro 83.9 17 0.00037 34.9 11.8 80 104-190 4-85 (315)
404 PRK05600 thiamine biosynthesis 83.8 4.3 9.4E-05 39.9 7.8 34 105-138 40-74 (370)
405 TIGR02437 FadB fatty oxidation 83.7 5.4 0.00012 42.8 9.0 103 106-224 313-430 (714)
406 TIGR00497 hsdM type I restrict 83.6 5.8 0.00013 40.6 9.0 110 107-219 219-352 (501)
407 COG0499 SAM1 S-adenosylhomocys 83.5 38 0.00083 33.4 13.7 117 105-252 208-325 (420)
408 PRK08618 ornithine cyclodeamin 83.5 29 0.00062 33.4 13.3 115 61-188 85-202 (325)
409 PRK06141 ornithine cyclodeamin 83.4 30 0.00065 33.1 13.3 113 61-187 83-198 (314)
410 PRK12921 2-dehydropantoate 2-r 83.3 6.7 0.00014 36.8 8.7 92 108-219 2-99 (305)
411 TIGR01809 Shik-DH-AROM shikima 83.2 19 0.00042 33.9 11.7 64 78-141 97-161 (282)
412 PF03141 Methyltransf_29: Puta 83.1 5 0.00011 40.8 8.0 101 104-221 364-466 (506)
413 PLN02256 arogenate dehydrogena 83.0 44 0.00096 31.9 15.2 106 105-247 35-143 (304)
414 COG1748 LYS9 Saccharopine dehy 83.0 4.6 0.0001 40.0 7.6 73 107-187 2-77 (389)
415 cd08300 alcohol_DH_class_III c 82.9 16 0.00035 35.2 11.5 98 104-221 185-287 (368)
416 PRK14027 quinate/shikimate deh 82.9 24 0.00053 33.3 12.2 64 78-143 101-165 (283)
417 PF01408 GFO_IDH_MocA: Oxidore 82.8 22 0.00047 28.1 12.4 112 108-248 2-116 (120)
418 COG1565 Uncharacterized conser 82.2 2.5 5.4E-05 41.3 5.2 48 103-150 75-130 (370)
419 cd05291 HicDH_like L-2-hydroxy 82.2 19 0.00041 34.3 11.3 78 107-190 1-80 (306)
420 cd01483 E1_enzyme_family Super 82.0 7.6 0.00017 32.3 7.7 31 108-139 1-33 (143)
421 COG5379 BtaA S-adenosylmethion 82.0 2.5 5.4E-05 40.3 5.0 77 104-189 62-143 (414)
422 PRK15076 alpha-galactosidase; 81.9 15 0.00033 36.9 11.0 76 107-187 2-84 (431)
423 cd08233 butanediol_DH_like (2R 81.8 10 0.00022 36.2 9.5 97 105-221 172-271 (351)
424 PRK14806 bifunctional cyclohex 81.7 47 0.001 35.6 15.3 90 107-222 4-96 (735)
425 PRK06046 alanine dehydrogenase 81.7 30 0.00065 33.3 12.7 114 61-188 87-203 (326)
426 PRK07417 arogenate dehydrogena 81.7 7.4 0.00016 36.4 8.3 89 108-224 2-92 (279)
427 COG0604 Qor NADPH:quinone redu 81.7 7.8 0.00017 37.4 8.6 96 105-222 142-241 (326)
428 COG1062 AdhC Zn-dependent alco 81.7 19 0.00041 35.1 10.9 97 106-222 186-285 (366)
429 PRK08306 dipicolinate synthase 81.5 11 0.00025 35.7 9.5 86 105-219 151-238 (296)
430 cd08301 alcohol_DH_plants Plan 81.4 17 0.00036 35.1 10.9 99 104-222 186-289 (369)
431 KOG1227 Putative methyltransfe 81.4 0.37 8E-06 45.8 -0.7 78 105-187 194-271 (351)
432 cd08234 threonine_DH_like L-th 81.4 13 0.00029 34.8 10.1 94 105-221 159-256 (334)
433 PF06690 DUF1188: Protein of u 81.4 3.6 7.9E-05 37.8 5.7 62 106-187 42-104 (252)
434 PRK09422 ethanol-active dehydr 81.2 27 0.00059 32.9 12.1 98 104-221 161-260 (338)
435 PRK07589 ornithine cyclodeamin 80.9 34 0.00074 33.4 12.7 111 63-187 89-202 (346)
436 cd08255 2-desacetyl-2-hydroxye 80.8 14 0.0003 33.7 9.7 94 104-222 96-190 (277)
437 cd08286 FDH_like_ADH2 formalde 80.8 16 0.00036 34.5 10.5 97 105-221 166-265 (345)
438 PTZ00117 malate dehydrogenase; 80.7 16 0.00035 35.1 10.3 108 105-220 4-120 (319)
439 PRK00045 hemA glutamyl-tRNA re 80.5 19 0.0004 36.1 11.1 100 105-225 181-282 (423)
440 PTZ00082 L-lactate dehydrogena 80.5 34 0.00075 32.9 12.5 77 106-189 6-85 (321)
441 PRK11730 fadB multifunctional 80.2 5.1 0.00011 43.0 7.3 102 107-224 314-430 (715)
442 PRK10083 putative oxidoreducta 80.1 14 0.0003 34.9 9.7 97 105-221 160-258 (339)
443 PF05711 TylF: Macrocin-O-meth 79.8 5.8 0.00013 36.9 6.7 108 104-222 73-212 (248)
444 COG1086 Predicted nucleoside-d 79.7 11 0.00024 39.0 9.1 79 105-187 249-334 (588)
445 TIGR02441 fa_ox_alpha_mit fatt 79.6 6.2 0.00014 42.5 7.7 102 107-224 336-452 (737)
446 TIGR01408 Ube1 ubiquitin-activ 79.4 6 0.00013 44.1 7.7 51 87-139 3-58 (1008)
447 cd08245 CAD Cinnamyl alcohol d 79.4 21 0.00045 33.5 10.6 94 104-221 161-255 (330)
448 PRK03659 glutathione-regulated 79.2 8.9 0.00019 40.2 8.6 93 107-222 401-498 (601)
449 COG0677 WecC UDP-N-acetyl-D-ma 79.1 26 0.00056 35.0 11.0 112 107-225 10-131 (436)
450 TIGR02371 ala_DH_arch alanine 79.1 39 0.00085 32.5 12.5 113 62-188 87-202 (325)
451 cd01488 Uba3_RUB Ubiquitin act 78.9 8.4 0.00018 36.7 7.6 32 108-139 1-33 (291)
452 PRK11154 fadJ multifunctional 78.8 8.6 0.00019 41.2 8.5 104 106-224 309-427 (708)
453 PF02153 PDH: Prephenate dehyd 78.7 38 0.00081 31.4 11.9 148 120-303 2-165 (258)
454 TIGR01627 A_thal_3515 uncharac 78.5 14 0.00031 33.5 8.4 49 100-150 34-82 (225)
455 PF02056 Glyco_hydro_4: Family 78.4 10 0.00022 33.6 7.5 70 108-186 1-81 (183)
456 TIGR01035 hemA glutamyl-tRNA r 78.3 26 0.00055 35.0 11.3 99 105-225 179-279 (417)
457 cd05279 Zn_ADH1 Liver alcohol 78.2 20 0.00043 34.6 10.3 97 105-221 183-284 (365)
458 PRK06949 short chain dehydroge 78.2 17 0.00036 32.8 9.2 77 105-187 8-95 (258)
459 cd05290 LDH_3 A subgroup of L- 78.1 29 0.00062 33.3 11.1 77 108-190 1-80 (307)
460 cd05293 LDH_1 A subgroup of L- 78.0 53 0.0012 31.5 12.9 108 105-221 2-119 (312)
461 KOG1331 Predicted methyltransf 78.0 1.4 3E-05 41.7 1.9 99 104-221 44-142 (293)
462 PRK06545 prephenate dehydrogen 77.7 72 0.0016 31.0 14.9 92 107-223 1-95 (359)
463 COG4565 CitB Response regulato 77.7 25 0.00055 32.0 9.8 76 131-222 2-82 (224)
464 PRK14620 NAD(P)H-dependent gly 77.7 30 0.00065 32.9 11.2 100 108-223 2-108 (326)
465 cd08236 sugar_DH NAD(P)-depend 77.4 43 0.00092 31.6 12.2 98 104-221 158-257 (343)
466 COG4798 Predicted methyltransf 77.4 3.7 8.1E-05 36.9 4.3 114 104-221 47-165 (238)
467 PRK06223 malate dehydrogenase; 77.3 25 0.00055 33.2 10.5 78 107-190 3-82 (307)
468 PLN02702 L-idonate 5-dehydroge 76.7 14 0.0003 35.6 8.7 97 105-221 181-284 (364)
469 PRK06522 2-dehydropantoate 2-r 76.6 19 0.0004 33.7 9.3 91 108-219 2-97 (304)
470 TIGR02819 fdhA_non_GSH formald 76.5 27 0.00059 34.4 10.8 106 105-221 185-298 (393)
471 PRK10669 putative cation:proto 76.4 13 0.00028 38.6 8.8 93 107-222 418-515 (558)
472 cd08261 Zn_ADH7 Alcohol dehydr 76.3 19 0.00042 33.9 9.5 97 104-221 158-257 (337)
473 PF03435 Saccharop_dh: Sacchar 76.2 9.5 0.00021 37.3 7.5 72 109-187 1-76 (386)
474 PRK08507 prephenate dehydrogen 75.8 18 0.00039 33.7 8.9 89 108-224 2-92 (275)
475 COG1250 FadB 3-hydroxyacyl-CoA 75.3 9.8 0.00021 36.5 7.0 107 106-224 3-120 (307)
476 PRK07102 short chain dehydroge 75.1 14 0.00031 33.1 7.8 76 107-187 2-85 (243)
477 TIGR01381 E1_like_apg7 E1-like 75.0 3.6 7.8E-05 43.3 4.2 34 106-139 338-372 (664)
478 PLN02427 UDP-apiose/xylose syn 74.8 9.2 0.0002 37.3 7.0 78 105-187 13-95 (386)
479 PF00106 adh_short: short chai 74.8 19 0.00042 29.9 8.2 76 107-188 1-90 (167)
480 cd01065 NAD_bind_Shikimate_DH 74.7 23 0.0005 29.4 8.5 75 104-190 17-93 (155)
481 PRK15181 Vi polysaccharide bio 74.6 6.9 0.00015 37.6 5.9 81 105-187 14-99 (348)
482 PF11968 DUF3321: Putative met 74.5 2 4.3E-05 39.1 2.0 95 106-226 52-153 (219)
483 cd05292 LDH_2 A subgroup of L- 74.5 50 0.0011 31.4 11.7 106 108-221 2-115 (308)
484 PRK05708 2-dehydropantoate 2-r 74.5 16 0.00034 34.8 8.3 97 107-223 3-106 (305)
485 TIGR03693 ocin_ThiF_like putat 74.2 13 0.00028 39.0 7.9 76 105-190 128-216 (637)
486 cd08265 Zn_ADH3 Alcohol dehydr 74.2 36 0.00078 33.1 10.9 98 105-221 203-306 (384)
487 PRK08945 putative oxoacyl-(acy 74.1 17 0.00037 32.6 8.1 78 105-187 11-101 (247)
488 PRK08818 prephenate dehydrogen 73.9 7 0.00015 38.5 5.7 80 106-224 4-89 (370)
489 cd08296 CAD_like Cinnamyl alco 73.9 26 0.00057 33.1 9.7 95 105-221 163-258 (333)
490 PF03807 F420_oxidored: NADP o 73.8 21 0.00046 27.1 7.5 87 108-219 1-91 (96)
491 cd05281 TDH Threonine dehydrog 73.7 29 0.00063 32.9 10.0 97 104-221 162-261 (341)
492 PRK07904 short chain dehydroge 73.7 25 0.00054 32.0 9.2 79 104-187 6-96 (253)
493 PRK06823 ornithine cyclodeamin 73.7 65 0.0014 30.9 12.3 112 62-187 86-201 (315)
494 PRK05396 tdh L-threonine 3-deh 73.4 29 0.00063 32.8 9.9 98 105-222 163-263 (341)
495 cd05288 PGDH Prostaglandin deh 73.4 27 0.00058 32.6 9.5 96 105-221 145-243 (329)
496 PRK06153 hypothetical protein; 73.4 4.2 9.1E-05 40.3 4.0 34 105-138 175-209 (393)
497 COG3129 Predicted SAM-dependen 73.4 6.2 0.00013 36.5 4.8 80 106-188 79-163 (292)
498 TIGR01763 MalateDH_bact malate 73.2 36 0.00078 32.5 10.4 77 107-190 2-81 (305)
499 PRK00258 aroE shikimate 5-dehy 73.1 39 0.00084 31.6 10.4 99 78-189 96-196 (278)
500 TIGR03029 EpsG chain length de 73.1 68 0.0015 29.6 12.1 17 172-188 206-222 (274)
No 1
>PLN02823 spermine synthase
Probab=100.00 E-value=1.7e-63 Score=477.27 Aligned_cols=330 Identities=73% Similarity=1.193 Sum_probs=297.9
Q ss_pred ceeheeccCcccccCCCCCCC--CCCccCCCeEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeee
Q 019550 5 AVEILFENGFSKVCNDTDPNI--NGNLQDCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQ 82 (339)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q 82 (339)
||||.--||-|....-..|.- ..++..+.|++|...++.++.++++++|++++|+||+|+|++++.+|++|++||..|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~q 80 (336)
T PLN02823 1 AVEIVHGNGTSHITAVATPTAALASNYAKSLWYEEEIEDDLRWSYAVNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKMQ 80 (336)
T ss_pred CCceeccCCcccccCCCCcccccccccccCeeEeeccCCCcceEEEeccEEEeccCCCeEEEEEECCCCceEEEECCccc
Confidence 789999999988765544432 233447789999999999999999999999999999999999999999999999999
Q ss_pred ccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeE
Q 019550 83 SAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLN 162 (339)
Q Consensus 83 ~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~ 162 (339)
+++.|++.|||+|+|++++.|++|++||+||+|+|+++++++++.+..+|++|||||+|+++||++|+.+...+++||++
T Consensus 81 s~~~de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~ 160 (336)
T PLN02823 81 SAEADEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLE 160 (336)
T ss_pred cccchHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceE
Confidence 99999999999999999999999999999999999999999999888999999999999999999998766667899999
Q ss_pred EEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHH-HHHccccCCCcEEEEecCCCCccCchhhHHHHHHHH
Q 019550 163 LVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYE-RILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTI 241 (339)
Q Consensus 163 v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~-~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l 241 (339)
++++||++||+..+++||+|++|++||...+|+..|||.|||+ . ++++|+|||++++|.+++..+...+.+..+.+++
T Consensus 161 v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~-~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl 239 (336)
T PLN02823 161 LIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERI-VKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTL 239 (336)
T ss_pred EEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHH-HHHhcCCCcEEEEeccCcchhccHHHHHHHHHHH
Confidence 9999999999887889999999999987656778899999998 8 7999999999999988764445567889999999
Q ss_pred HhHCCceEEEEEeecccCCceeEEEEecCCCC-CCHHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhcCCCccc
Q 019550 242 KQVFKHVVAYTAHVPSFADTWGWVMASDQPFS-INAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVY 320 (339)
Q Consensus 242 ~~~F~~v~~~~~~iP~~~~~~~~~~as~~p~~-~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~~~~~~ 320 (339)
+++|++|.+|.+.+|+|++.|+|++||+.|.. ++.+.+.+|+.++...++||||+++|.++|+||+++++.|..+.+|+
T Consensus 240 ~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~~~~~~~~~~~~~~~~~~~~lryy~~~~h~a~F~lP~~~~~~l~~~~~v~ 319 (336)
T PLN02823 240 RQVFKYVVPYTAHVPSFADTWGWVMASDHPFADLSAEELDSRIKERIDGELKYLDGETFSSAFALNKTVRQALANETHVY 319 (336)
T ss_pred HHhCCCEEEEEeecCCCCCceEEEEEeCCccccCChhHHHHhhhhcccCCCeEECHHHHHHHccCcHHHHHhhcCCCCce
Confidence 99999999999999999888999999998753 78888888887654346999999999999999999999999999999
Q ss_pred ccccccccccccccc
Q 019550 321 TEEDARFIHGHGVAY 335 (339)
Q Consensus 321 t~~~~~~~~~~~~~~ 335 (339)
|+++|+++..+|-+-
T Consensus 320 t~~~p~~~~~~~~~~ 334 (336)
T PLN02823 320 TEENARFIHGHGTAA 334 (336)
T ss_pred ecCCCeeecCccccc
Confidence 999999999888653
No 2
>PRK00536 speE spermidine synthase; Provisional
Probab=100.00 E-value=6.8e-59 Score=430.18 Aligned_cols=257 Identities=18% Similarity=0.243 Sum_probs=229.3
Q ss_pred CeEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEE
Q 019550 33 CWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIM 112 (339)
Q Consensus 33 ~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~I 112 (339)
+|++|..+++.++.++++++|++++|+||+|+|++++.|||+|+|| ..|.+++||++|||||+|+||+.|++|++||+|
T Consensus 1 ~w~~e~~~~~~~~~~~v~~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~h~~pk~VLIi 79 (262)
T PRK00536 1 MWITQEITPYLRKEYTIEAKLLDVRSEHNILEIFKSKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCTKKELKEVLIV 79 (262)
T ss_pred CceEEecCCCceEEEEEEEEEEccCCCCcEEEEEEccccccEEEEe-eeeeecchhhhHHHHHHHHHHhhCCCCCeEEEE
Confidence 5999999999999999999999999999999999999999999999 666699999999999999999999999999999
Q ss_pred ecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEEEecCCCCCC
Q 019550 113 GGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGDLADPVE 191 (339)
Q Consensus 113 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvIi~D~~d~~~ 191 (339)
|||+|+++||++||+ .+|++||||++|+++||+|++....+++|||++++. ++.+ ..++||+||+|+.
T Consensus 80 GGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~~~~fDVIIvDs~---- 148 (262)
T PRK00536 80 DGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLDIKKYDLIICLQE---- 148 (262)
T ss_pred cCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhccCCcCCEEEEcCC----
Confidence 999999999999986 399999999999999999999776789999999997 2333 3478999999964
Q ss_pred CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEecCC
Q 019550 192 GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQP 271 (339)
Q Consensus 192 ~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~p 271 (339)
++++||+. ++++|+|||++++|+++| +...+.++.+.++++++|+.|++|.+++|+| +.|+|++||+.+
T Consensus 149 -------~~~~fy~~-~~~~L~~~Gi~v~Qs~sp--~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~-g~wgf~~aS~~~ 217 (262)
T PRK00536 149 -------PDIHKIDG-LKRMLKEDGVFISVAKHP--LLEHVSMQNALKNMGDFFSIAMPFVAPLRIL-SNKGYIYASFKT 217 (262)
T ss_pred -------CChHHHHH-HHHhcCCCcEEEECCCCc--ccCHHHHHHHHHHHHhhCCceEEEEecCCCc-chhhhheecCCC
Confidence 35699999 899999999999999998 4577889999999999999999999999999 579999999986
Q ss_pred CCCCHHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhcC
Q 019550 272 FSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLN 315 (339)
Q Consensus 272 ~~~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~ 315 (339)
.+.. +.+.+|++.. ..+||||+++|+++|+||++++++|+.
T Consensus 218 ~p~~-~~~~~~~~~~--~~lryy~~~~h~a~F~lP~~v~~~l~~ 258 (262)
T PRK00536 218 HPLK-DLMLQKIEAL--KSVRYYNEDIHRAAFALPKNLQEVFKD 258 (262)
T ss_pred CCcc-chhhhhhccc--CCceeeCHHHHHHHhcCcHHHHHHHHH
Confidence 5532 3334454432 358999999999999999999999863
No 3
>PLN02366 spermidine synthase
Probab=100.00 E-value=8.4e-57 Score=426.98 Aligned_cols=283 Identities=29% Similarity=0.520 Sum_probs=247.1
Q ss_pred CccCCCeEEEEe--CcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCC
Q 019550 28 NLQDCCWFEEVI--DDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQN 105 (339)
Q Consensus 28 ~~~~~~w~~e~~--~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~ 105 (339)
.+.++.||+|.. +++.++.++++++|++++|+||+|.|++++++|++|++||.+|++++|++.|||+|+|+|++.|++
T Consensus 12 ~~~~~~w~~e~~~~~~~~~~~~~v~~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~ 91 (308)
T PLN02366 12 STVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDFQDVLVFESATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPN 91 (308)
T ss_pred chhhhceEeecccCCCCceEEEEEeeEEEeccCCCeeEEEEEcCCCceEEEECCEeeecCccHHHHHHHHHHHHHhhCCC
Confidence 356789999973 577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~ 184 (339)
|++||+||||+|++++++++|++..+|++||||++|+++||++|+.....+++||++++++||++|++.. +++||+||+
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 9999999999999999999998789999999999999999999986444578999999999999999876 578999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHC-CceEEEEEeecccC-Cce
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVF-KHVVAYTAHVPSFA-DTW 262 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F-~~v~~~~~~iP~~~-~~~ 262 (339)
|+++|. +++..|++.+||+. ++++|+|||++++|.+++ |...+.++.+.++++++| +.+..|.+.+|+|+ +.|
T Consensus 172 D~~dp~--~~~~~L~t~ef~~~-~~~~L~pgGvlv~q~~s~--~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w 246 (308)
T PLN02366 172 DSSDPV--GPAQELFEKPFFES-VARALRPGGVVCTQAESM--WLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVI 246 (308)
T ss_pred cCCCCC--CchhhhhHHHHHHH-HHHhcCCCcEEEECcCCc--ccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCce
Confidence 999987 67788999999999 899999999999999887 667788999999999999 57777788999995 569
Q ss_pred eEEEEecC-CCC---CCHHHHHH-HHHhcCcccccccCHHhhHHhccCCHHHHHhhcC
Q 019550 263 GWVMASDQ-PFS---INAEEIDN-RIKSRINAELLYLNGASFLSSTTMNKAVYLSLLN 315 (339)
Q Consensus 263 ~~~~as~~-p~~---~~~~~l~~-r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~ 315 (339)
+|++||+. +.. .+.+.+.. +++.+...++||||+++|+++|+||+|+++.|+.
T Consensus 247 ~f~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~l~yy~~~~h~~~f~lp~~~~~~l~~ 304 (308)
T PLN02366 247 GFVLCSKEGPAVDFKHPVNPIDKLEGAGKAKRPLKFYNSEVHRAAFCLPSFAKRELES 304 (308)
T ss_pred EEEEEECCCccccccccccccchhhhhhcccCCCeEECHHHHHHHhcChHHHHHHHHh
Confidence 99999987 221 01111111 2222222469999999999999999999999875
No 4
>PRK00811 spermidine synthase; Provisional
Probab=100.00 E-value=1.2e-56 Score=422.81 Aligned_cols=278 Identities=36% Similarity=0.650 Sum_probs=250.4
Q ss_pred CCCeEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEE
Q 019550 31 DCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVF 110 (339)
Q Consensus 31 ~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL 110 (339)
++.||+|..+++.++.++++++|++++|+||+|.|++++++||+|++||..|+++++++.|||+++|+|++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~q~~~~de~~Y~e~l~h~~~~~~~~p~~VL 81 (283)
T PRK00811 2 MELWFTETLTDNYGQSFRVKKVLYEEKSPFQRIEIFETPEFGRLLALDGCVMTTERDEFIYHEMMTHVPLFAHPNPKRVL 81 (283)
T ss_pred CCcceeeccCCccceEEeeccEEEEcCCCCeeEEEEEcCCccEEEEECCeeeecCcchhhHHHHhhhHHHhhCCCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCC
Q 019550 111 IMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADP 189 (339)
Q Consensus 111 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~ 189 (339)
+||||+|+++++++++++..+|++||||++++++|+++|+.. ...+++||++++++|+++|++...++||+|++|+++|
T Consensus 82 ~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp 161 (283)
T PRK00811 82 IIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDP 161 (283)
T ss_pred EEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCC
Confidence 999999999999999878889999999999999999999743 3345689999999999999987778999999999998
Q ss_pred CCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeeccc-CCceeEEEEe
Q 019550 190 VEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF-ADTWGWVMAS 268 (339)
Q Consensus 190 ~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~-~~~~~~~~as 268 (339)
. +++..|++.+||+. ++++|+|||++++|.++| +...+.+..+.++++++|++|.+|...+|+| ++.|+|++||
T Consensus 162 ~--~~~~~l~t~ef~~~-~~~~L~~gGvlv~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as 236 (283)
T PRK00811 162 V--GPAEGLFTKEFYEN-CKRALKEDGIFVAQSGSP--FYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFAS 236 (283)
T ss_pred C--CchhhhhHHHHHHH-HHHhcCCCcEEEEeCCCc--ccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEee
Confidence 7 67778999999999 899999999999998887 4456789999999999999999999999999 5669999999
Q ss_pred cCC--CCCCHHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhc
Q 019550 269 DQP--FSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLL 314 (339)
Q Consensus 269 ~~p--~~~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 314 (339)
+.+ ...+.+.+.+|++++. .+++|||+++|+++|+||++++++|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~yy~~~~h~~~f~lp~~~~~~~~ 283 (283)
T PRK00811 237 KNDDLKFLPLDVIEARFAERG-IKTRYYNPELHKAAFALPQFVKDALK 283 (283)
T ss_pred cCcccccCccccchhhHhhcc-CCCeEECHHHHHHHhcCcHHHHHhhC
Confidence 853 2234455667776552 26999999999999999999999874
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-55 Score=410.19 Aligned_cols=277 Identities=38% Similarity=0.692 Sum_probs=250.6
Q ss_pred CCCeEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEE
Q 019550 31 DCCWFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVF 110 (339)
Q Consensus 31 ~~~w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL 110 (339)
.++||.|..+++.+..+++++++++++|+||.|.+++++.+|++|.+||..|++++|++.||||++|+|++.|++|++||
T Consensus 2 ~~~w~~e~~~~~~~~~~~v~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~ah~~pk~VL 81 (282)
T COG0421 2 ADMWFTELYDPGLRLMFRVERVLYEEKSEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLLAHPNPKRVL 81 (282)
T ss_pred CccceeeeecccccceeEeeeeeeeccCCceEEEEEeccccceEEEecChhhhccchhHHHHHHHHhchhhhCCCCCeEE
Confidence 57899999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCC
Q 019550 111 IMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPV 190 (339)
Q Consensus 111 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~ 190 (339)
+||+|+|+++|++++|.+.+++++|||||+|+++||+||+.......|||++++++||++|+++..++||+||+|.+||.
T Consensus 82 iiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 82 IIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred EECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 99999999999999999999999999999999999999997654444899999999999999998889999999999995
Q ss_pred CCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCc-eeEEEEe-
Q 019550 191 EGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADT-WGWVMAS- 268 (339)
Q Consensus 191 ~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~-~~~~~as- 268 (339)
+|+..|+|.+||+. |+++|+++|++++|+++| +...+....+.+.++++|+.+..|...+|+|++. |+|+++|
T Consensus 162 --gp~~~Lft~eFy~~-~~~~L~~~Gi~v~q~~~~--~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~ 236 (282)
T COG0421 162 --GPAEALFTEEFYEG-CRRALKEDGIFVAQAGSP--FLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASF 236 (282)
T ss_pred --CcccccCCHHHHHH-HHHhcCCCcEEEEecCCc--ccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeec
Confidence 89999999999999 899999999999999987 5666788999999999999999999999999654 9999999
Q ss_pred cCCCCCC-HHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhc
Q 019550 269 DQPFSIN-AEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLL 314 (339)
Q Consensus 269 ~~p~~~~-~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~ 314 (339)
+.++++. .+....|.... ..++|||+++|.++|+||+++++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~--~~~~yy~~~~h~~~f~lp~~~~~~~~ 281 (282)
T COG0421 237 NKAHPLKSLDALQARALAL--LTLKYYNEDIHDAAFALPKNLQDELK 281 (282)
T ss_pred CCCCcccchhHHHHHHhhh--hhhccCcHHHhhhhhcCCcchhhhcc
Confidence 5444433 23333443322 35799999999999999999998875
No 6
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=100.00 E-value=2.9e-51 Score=383.92 Aligned_cols=268 Identities=37% Similarity=0.682 Sum_probs=239.2
Q ss_pred eEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEe
Q 019550 34 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMG 113 (339)
Q Consensus 34 w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG 113 (339)
||+|..+++.++.++++++|++++|+||+|.|+++.++|++|++||..|+++.+++.|||+++|++++.|++|++||+||
T Consensus 1 w~~~~~~~~~~~~~~~~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~~e~~y~e~l~~~~l~~~~~p~~VL~iG 80 (270)
T TIGR00417 1 WFTEYHDKNFGLTMKVKKVLYHEKSEFQDLEIFETEEFGNVLVLDGVVQTTERDEFIYHEMIAHVPLFTHPNPKHVLVIG 80 (270)
T ss_pred CceeecCCCceEEEEeeeEEEEccCCCeeEEEEEcCCCceEEEECCcccccCchHHHHHHHhhhhHhhcCCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCC
Q 019550 114 GGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGG 193 (339)
Q Consensus 114 ~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~ 193 (339)
||+|+++++++++.+..++++||+|+++++.|+++++.....+++++++++.+|++++++...++||+||+|++++. +
T Consensus 81 ~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~--~ 158 (270)
T TIGR00417 81 GGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPV--G 158 (270)
T ss_pred CCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCC--C
Confidence 99999999999987778999999999999999999976545567899999999999999887789999999999886 5
Q ss_pred ccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccC-CceeEEEEecC-C
Q 019550 194 PCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFA-DTWGWVMASDQ-P 271 (339)
Q Consensus 194 p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~-~~~~~~~as~~-p 271 (339)
+...|++.+||+. ++++|+|||+++++.++| +.....+..+.++++++|+++.+|.+.+|+|+ +.|+|++||+. .
T Consensus 159 ~~~~l~~~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~~~ 235 (270)
T TIGR00417 159 PAETLFTKEFYEL-LKKALNEDGIFVAQSESP--WIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKNKY 235 (270)
T ss_pred cccchhHHHHHHH-HHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECCCC
Confidence 6678999999999 899999999999998777 45677889999999999999999999999994 56999999993 2
Q ss_pred CCCCHHHHHHHHHhcCcccccccCHHhhHHhccCCHH
Q 019550 272 FSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKA 308 (339)
Q Consensus 272 ~~~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~ 308 (339)
.+++.+ .+|++++...+++|||+++|+++|+||+|
T Consensus 236 ~~~~~~--~~~~~~~~~~~~~~y~~~~h~~~f~lp~~ 270 (270)
T TIGR00417 236 DPLEVE--DRRISEFEDGKTKYYNPDIHKAAFVLPKW 270 (270)
T ss_pred CCCCcc--hhhhhhcccCCCeEECHHHHHHhcCCCCC
Confidence 233222 23454432346899999999999999975
No 7
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=100.00 E-value=1.2e-50 Score=374.63 Aligned_cols=234 Identities=42% Similarity=0.789 Sum_probs=216.3
Q ss_pred CeEEEEeC---cccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeE
Q 019550 33 CWFEEVID---DDLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTV 109 (339)
Q Consensus 33 ~w~~e~~~---~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~V 109 (339)
+||+|..+ ++.+..|++++++++.+|+||+|.|++++.+|++|++||..|++++|++.|||+|+|+|++.|++|++|
T Consensus 1 ~w~~e~~~~~~~~~~~~~~v~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~q~~e~de~~y~e~l~h~~~~~~~~p~~V 80 (246)
T PF01564_consen 1 MWFTEYYSQFDPGLGVSYRVEEVLYEEKSPYQHIEIFESSPFGRILVLDGDVQLSERDEFIYHEMLVHPPLLLHPNPKRV 80 (246)
T ss_dssp TEEEEEET-TSTTEEEEEEEEEEEEEEEESSSEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHSSST-EE
T ss_pred CeEEEEeccCCCCceEEEEEEEEEEccCCCCCcEEEEEecCcCcEEEECCeEEEEEechHHHHHHHhhhHhhcCCCcCce
Confidence 69999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCC-ceeEEEecCCC
Q 019550 110 FIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNE-KFDVIFGDLAD 188 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~d 188 (339)
|+||+|+|++++++++|++..+|++|||||+|+++|++||+.....+++||++++++||+.||++..+ +||+|++|+++
T Consensus 81 LiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 81 LIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTD 160 (246)
T ss_dssp EEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSS
T ss_pred EEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCC
Confidence 99999999999999999888999999999999999999998765557899999999999999999887 99999999999
Q ss_pred CCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCc-eeEEEE
Q 019550 189 PVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADT-WGWVMA 267 (339)
Q Consensus 189 ~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~-~~~~~a 267 (339)
|. +++..||+.|||+. ++++|+|||++++|.+++ ......+..+.++++++|+++.+|.+++|+|++. |+|++|
T Consensus 161 p~--~~~~~l~t~ef~~~-~~~~L~~~Gv~v~~~~~~--~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~ 235 (246)
T PF01564_consen 161 PD--GPAPNLFTREFYQL-CKRRLKPDGVLVLQAGSP--FLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASA 235 (246)
T ss_dssp TT--SCGGGGSSHHHHHH-HHHHEEEEEEEEEEEEET--TTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEE
T ss_pred CC--CCcccccCHHHHHH-HHhhcCCCcEEEEEccCc--ccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEE
Confidence 87 56667999999999 899999999999999777 4567789999999999999999999999999865 789999
Q ss_pred ecCC
Q 019550 268 SDQP 271 (339)
Q Consensus 268 s~~p 271 (339)
|+.+
T Consensus 236 s~~~ 239 (246)
T PF01564_consen 236 SKDI 239 (246)
T ss_dssp ESST
T ss_pred eCCC
Confidence 9976
No 8
>PRK03612 spermidine synthase; Provisional
Probab=100.00 E-value=7.9e-47 Score=382.92 Aligned_cols=281 Identities=28% Similarity=0.460 Sum_probs=241.1
Q ss_pred eEEEEeCcccceeeeeceEEEeeecCCceEEEEEeCC-ce--EEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEE
Q 019550 34 WFEEVIDDDLKWSFALNRVLHKGTSEFQDIALLDTKR-FG--KVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVF 110 (339)
Q Consensus 34 w~~e~~~~~~~~~~~~~~vl~~~~s~~q~I~V~e~~~-~g--~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL 110 (339)
|+.+.......+.+++++++++++|+||+|.|+++++ +| +.|++||..|.++.|++.|||+++|++++.|++|++||
T Consensus 223 ~~~~~~~~~~~~~~~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~~de~~y~e~l~~~~l~~~~~~~rVL 302 (521)
T PRK03612 223 VLADRIETTAEQLLYGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSSRDEYRYHEALVHPAMAASARPRRVL 302 (521)
T ss_pred HcccchhhHHHhHhccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccCccHHHHHHHHHHHHHhhCCCCCeEE
Confidence 5555544445566778899999999999999999876 35 89999999999999999999999999999999999999
Q ss_pred EEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhh--h-hhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 111 IMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFL--T-VNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 111 ~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f--~-~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+||||+|.++++++++++..+|++|||||++++.||+++ + .+...+++||++++++|+++|++..+++||+|++|++
T Consensus 303 ~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~ 382 (521)
T PRK03612 303 VLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLP 382 (521)
T ss_pred EEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCC
Confidence 999999999999999866689999999999999999954 3 3344567899999999999999887789999999999
Q ss_pred CCCCCCc-cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEEEEEeecccCCceeEE
Q 019550 188 DPVEGGP-CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSFADTWGWV 265 (339)
Q Consensus 188 d~~~~~p-~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~iP~~~~~~~~~ 265 (339)
+|. .+ ..+++++|||+. ++++|+|||++++|.++| +...+.+.++.++++++ | .+.+|...+|+|+ .|+|+
T Consensus 383 ~~~--~~~~~~L~t~ef~~~-~~~~L~pgG~lv~~~~~~--~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g-~w~f~ 455 (521)
T PRK03612 383 DPS--NPALGKLYSVEFYRL-LKRRLAPDGLLVVQSTSP--YFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFG-EWGFV 455 (521)
T ss_pred CCC--CcchhccchHHHHHH-HHHhcCCCeEEEEecCCc--ccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcc-hhHHH
Confidence 886 33 367999999999 899999999999999887 45677889999999999 7 8999999999995 79999
Q ss_pred EEecCCCCCCHHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhcCCCccccccccccccc
Q 019550 266 MASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFIHG 330 (339)
Q Consensus 266 ~as~~p~~~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~~~~~~t~~~~~~~~~ 330 (339)
+|||.+.+... . .++ . ..++||||+++|+++|.||++++ +++.+|+|+++|++++.
T Consensus 456 ~as~~~~~~~~-~-~~~---~-~~~~~~y~~~~h~~~f~lp~~~~---~~~~~~~~~~~~~~~~~ 511 (521)
T PRK03612 456 LAGAGARPPLA-V-PTE---L-PVPLRFLDPALLAAAFVFPKDMR---RREVEPNTLNNPVLVRY 511 (521)
T ss_pred eeeCCCCcccc-c-chh---c-ccCCcccCHHHHHHHhCCChhhh---hcCcCccccCCcceeHH
Confidence 99997644221 1 111 1 34799999999999999999998 57789999999988764
No 9
>PRK01581 speE spermidine synthase; Validated
Probab=100.00 E-value=3.3e-45 Score=350.04 Aligned_cols=223 Identities=34% Similarity=0.551 Sum_probs=202.1
Q ss_pred eeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhc
Q 019550 47 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKH 126 (339)
Q Consensus 47 ~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~ 126 (339)
..+.++||+++|+||+|.|+++.++ .|+|||.+|++++||++|||+|+|+|++.|++|++||+||||+|.++++++++
T Consensus 94 ~~~~~vl~~~~S~yQ~I~I~et~~~--~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 94 AGEHTNLFAEKSNYQNINLLQVSDI--RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred hcccCEEEecCCCCceEEEEEcCCE--EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhc
Confidence 3566999999999999999999976 69999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCHHHHHHHHHhhh---hhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHH
Q 019550 127 KSLEKVVMCDIDQEVVDFCRRFLT---VNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSF 203 (339)
Q Consensus 127 ~~~~~v~~VEid~~vi~~ar~~f~---~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef 203 (339)
.+..+|++||||++|+++|++++. .++..+++||++++++||++|++...++||+||+|++||.. .++..||+.+|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~-~~~~~LyT~EF 250 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPAT-ELLSTLYTSEL 250 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccc-cchhhhhHHHH
Confidence 888999999999999999998643 33456779999999999999998878899999999998863 23578999999
Q ss_pred HHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEecCCCCCC
Q 019550 204 YERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSIN 275 (339)
Q Consensus 204 ~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~p~~~~ 275 (339)
|+. ++++|+|||++++|.++| +.....++.+.++++++|+.+..|.+.+|+|++.|+|++||+.|..++
T Consensus 251 y~~-~~~~LkPgGV~V~Qs~sp--~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~~~ 319 (374)
T PRK01581 251 FAR-IATFLTEDGAFVCQSNSP--ADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLD 319 (374)
T ss_pred HHH-HHHhcCCCcEEEEecCCh--hhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccccc
Confidence 999 899999999999998887 445667788999999999999999999999998899999999887654
No 10
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=330.92 Aligned_cols=278 Identities=29% Similarity=0.529 Sum_probs=246.6
Q ss_pred ccCCCeEEEEeCc-----ccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccC
Q 019550 29 LQDCCWFEEVIDD-----DLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCH 103 (339)
Q Consensus 29 ~~~~~w~~e~~~~-----~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~ 103 (339)
....+||.|..+. +...++++++++++++|.||++.|+++..+|++|.+||..|.+++|++.|.||++|.|++.|
T Consensus 40 ~i~~GwF~e~~~~~~i~pg~a~tLkVe~vl~~ekS~~qdvlvf~s~tyg~vlvlDgviqlte~de~~Yqemi~~l~l~s~ 119 (337)
T KOG1562|consen 40 SIENGWFAEIHNKKDIWPGQALTLKVEKVLHDEKSDSQDVLVFESATYGKVLVLDGVIQLTERDEFAYQEMIAHLALCSH 119 (337)
T ss_pred cccCCeEeeecCCCCCCCCceeEEEeeeecccCchhHHHHHHHHHhhhheeeeeCCeeeCCccccccceeeeeccccccC
Confidence 4556899997663 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvI 182 (339)
++|++||+||+|+|++.|+..+|....+++.+|||..|++.+++|++.....+++++|.++.|||..|++.. .++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 999999999999999999999999999999999999999999999997767799999999999999999987 6889999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccC-Cc
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFA-DT 261 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~-~~ 261 (339)
|+|..||. +|+..+|.+.+|+. +.++||+||+++++..+- |...+..++..+.-+.+|+.+..-.+.+|+|+ +.
T Consensus 200 i~dssdpv--gpa~~lf~~~~~~~-v~~aLk~dgv~~~q~ec~--wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~ 274 (337)
T KOG1562|consen 200 ITDSSDPV--GPACALFQKPYFGL-VLDALKGDGVVCTQGECM--WLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGR 274 (337)
T ss_pred EEecCCcc--chHHHHHHHHHHHH-HHHhhCCCcEEEEeccee--hHHHHHHHHHHHhHHHhcCccceeeecCCCCccce
Confidence 99999998 89999999999999 899999999999998754 88888999999999999997765556799996 56
Q ss_pred eeEEEEe-cCC-------C-CCCHHHHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhcC
Q 019550 262 WGWVMAS-DQP-------F-SINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLN 315 (339)
Q Consensus 262 ~~~~~as-~~p-------~-~~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~ 315 (339)
.+|.+|| +.| . +++..+. .++.+ .+|+|||.++|+++|+||.|+++.+..
T Consensus 275 igf~l~s~~~~~~~~~~p~n~i~~~e~-~~l~~---~~L~yyn~e~h~aaf~lPsf~~k~~~~ 333 (337)
T KOG1562|consen 275 IGFMLCSKLKPDGKYKTPGNPITCKEQ-LSLYE---EQLLYYNVEFHSAAFVLPSFAEKWLFY 333 (337)
T ss_pred EEEEEecccCCCCCccCCCCccCHHHH-Hhhhh---hhhccCCchhceeeeechHHHHHHHHH
Confidence 7899999 333 1 2332222 23332 378999999999999999999887753
No 11
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=100.00 E-value=6.7e-44 Score=333.90 Aligned_cols=270 Identities=27% Similarity=0.468 Sum_probs=238.2
Q ss_pred ccceeeeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHH
Q 019550 42 DLKWSFALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAR 121 (339)
Q Consensus 42 ~~~~~~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~ 121 (339)
..++++..++++|..+|+||+|.|.+.++ .+.|++||..|.+++||..|||.++++++...+..++||+||+|+|-.+|
T Consensus 227 ~~eqqlygdeIIh~~qspYQ~iVvTr~g~-d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlR 305 (508)
T COG4262 227 TSEQQLYGDEIIHAIQSPYQRIVVTRRGD-DLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALR 305 (508)
T ss_pred hHHHHhhcCceeeeccCccceEEEEEecC-ceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHH
Confidence 34577888999999999999999998876 48899999999999999999999999999877889999999999999999
Q ss_pred HHHhcCCCCEEEEEEcCHHHHHHHHHhh---hhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccC
Q 019550 122 EALKHKSLEKVVMCDIDQEVVDFCRRFL---TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQL 198 (339)
Q Consensus 122 ~l~~~~~~~~v~~VEid~~vi~~ar~~f---~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L 198 (339)
|++|++...+|+.||+||+|++++++.. ..++++++|||++++.+|+.+|++...+.||+||+|.+||.... ..+|
T Consensus 306 ellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps-~~rl 384 (508)
T COG4262 306 ELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS-IGRL 384 (508)
T ss_pred HHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc-hhhh
Confidence 9999887999999999999999999664 35778899999999999999999999999999999999998432 3689
Q ss_pred CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEecCCCCCCH-H
Q 019550 199 YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINA-E 277 (339)
Q Consensus 199 ~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~p~~~~~-~ 277 (339)
|+.|||.. ++++|+++|++++|.++| +..++.++.+.+|++++.-.+.+|.+++|+||+ |||++|++.+.++.+ .
T Consensus 385 YS~eFY~l-l~~~l~e~Gl~VvQags~--y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fep~~ 460 (508)
T COG4262 385 YSVEFYRL-LSRHLAETGLMVVQAGSP--YFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFEPPT 460 (508)
T ss_pred hhHHHHHH-HHHhcCcCceEEEecCCC--ccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCCCCc
Confidence 99999998 899999999999999999 567889999999999999999999999999976 999999998865432 2
Q ss_pred HHHHHHHhcCcccccccCHHhhHHhccCCHHHHHhhcCCCccccccccccc
Q 019550 278 EIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 328 (339)
Q Consensus 278 ~l~~r~~~~~~~~~~yy~~~~h~~~f~lp~~~~~~~~~~~~~~t~~~~~~~ 328 (339)
+. .++++|.|.++..++|.+.+. +=+.+-.++|-+||..+
T Consensus 461 e~--------~~~t~FLd~e~~~a~~~fg~d---~prp~vepntL~~p~lV 500 (508)
T COG4262 461 EY--------RPPTRFLDAEVLHAAFVFGPD---MPRPQVEPNTLDNPSLV 500 (508)
T ss_pred cc--------CcccchhhHHHHHHHHhcCCC---CCCCCCCccccCCHHHH
Confidence 11 358999999999999988765 22336678899988644
No 12
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=1.4e-28 Score=229.61 Aligned_cols=215 Identities=19% Similarity=0.295 Sum_probs=172.4
Q ss_pred eeecCCceEEEEEeCCceEEEEEcC-eeecccc------ChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcC
Q 019550 55 KGTSEFQDIALLDTKRFGKVLVIDG-KMQSAEV------DEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHK 127 (339)
Q Consensus 55 ~~~s~~q~I~V~e~~~~g~~L~ldG-~~q~~~~------d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~ 127 (339)
..++.|+.|.|+|... .|+|.+|+ ..|+.+. ..+.|+++|+ ..+..+++|++||+||||+|.++++++++.
T Consensus 11 ~~~~~~~~i~v~e~~~-~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~-~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~ 88 (262)
T PRK04457 11 PAKAGFPEVGVSEEGG-VRSLHLGSDTVQSSMRIDDPSELELAYTRAMM-GFLLFNPRPQHILQIGLGGGSLAKFIYTYL 88 (262)
T ss_pred cccccCCCcEEEecCC-EEEEEECCCcceeeeecCCcccccCHHHHHHH-HHHhcCCCCCEEEEECCCHhHHHHHHHHhC
Confidence 3577899999999986 59999998 5888752 2458999886 344456788999999999999999999888
Q ss_pred CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHH
Q 019550 128 SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERI 207 (339)
Q Consensus 128 ~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~ 207 (339)
|..+|++||+||+++++|+++|..+. .++|++++++|+++++...+++||+|++|.++.. +++..+++.+|++.
T Consensus 89 p~~~v~~VEidp~vi~~A~~~f~~~~---~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~--~~~~~l~t~efl~~- 162 (262)
T PRK04457 89 PDTRQTAVEINPQVIAVARNHFELPE---NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGE--GIIDALCTQPFFDD- 162 (262)
T ss_pred CCCeEEEEECCHHHHHHHHHHcCCCC---CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCC--CCccccCcHHHHHH-
Confidence 88999999999999999999987643 2689999999999999877789999999998754 34567889999999
Q ss_pred HccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEec-CCCCCCHHHHHHHHHh
Q 019550 208 LKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD-QPFSINAEEIDNRIKS 285 (339)
Q Consensus 208 ~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~-~p~~~~~~~l~~r~~~ 285 (339)
++++|+|||++++|.. .....+..+.++++++|+++..+ +|.....+..++|++ .|...+.+.+.+|++.
T Consensus 163 ~~~~L~pgGvlvin~~-----~~~~~~~~~l~~l~~~F~~~~~~---~~~~~~~N~v~~a~~~~~~~~~~~~l~~~a~~ 233 (262)
T PRK04457 163 CRNALSSDGIFVVNLW-----SRDKRYDRYLERLESSFEGRVLE---LPAESHGNVAVFAFKSAPKELRWDKLRKRAKK 233 (262)
T ss_pred HHHhcCCCcEEEEEcC-----CCchhHHHHHHHHHHhcCCcEEE---EecCCCccEEEEEECCCCCCcCHHHHHHHHHH
Confidence 8999999999999852 23345678889999999964322 233333455678887 4656677888888654
No 13
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=141.09 Aligned_cols=168 Identities=20% Similarity=0.259 Sum_probs=139.1
Q ss_pred EEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh
Q 019550 73 KVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN 152 (339)
Q Consensus 73 ~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~ 152 (339)
-.+.+||..+..+.....+..++..+.+....+..+||+.+.|-|.++.++++ .++.+|..||.||.|+++|+-+ ++.
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~-rGA~~VitvEkdp~VLeLa~lN-PwS 179 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALE-RGAIHVITVEKDPNVLELAKLN-PWS 179 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHH-cCCcEEEEEeeCCCeEEeeccC-CCC
Confidence 57889999887776666788888877776555688999999999999999998 6777999999999999999877 544
Q ss_pred ccccCCCCeEEEEccHHHHHHhcC-CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCc-cCc
Q 019550 153 QEAFCSKKLNLVVNDAKAELEKRN-EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGI-FTH 230 (339)
Q Consensus 153 ~~~~~~~rv~v~~~D~~~~l~~~~-~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~-~~~ 230 (339)
..- .+.+++++.+|+.+++++.+ +.||+||.|++.-. .+.+||+.+||++ +.+.|++||.+.-.++.|+. ...
T Consensus 180 r~l-~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS---~AgeLYseefY~E-l~RiLkrgGrlFHYvG~Pg~ryrG 254 (287)
T COG2521 180 REL-FEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFS---LAGELYSEEFYRE-LYRILKRGGRLFHYVGNPGKRYRG 254 (287)
T ss_pred ccc-cccccEEecccHHHHHhcCCccccceEeeCCCccc---hhhhHhHHHHHHH-HHHHcCcCCcEEEEeCCCCccccc
Confidence 332 34589999999999998865 67999999998532 3458999999999 89999999999888887753 345
Q ss_pred hhhHHHHHHHHHhHCCc
Q 019550 231 KEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 231 ~~~~~~i~~~l~~~F~~ 247 (339)
.+..+.+.+.|+++...
T Consensus 255 ~d~~~gVa~RLr~vGF~ 271 (287)
T COG2521 255 LDLPKGVAERLRRVGFE 271 (287)
T ss_pred CChhHHHHHHHHhcCce
Confidence 67889999999998554
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=7.6e-15 Score=118.36 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=85.7
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
.++||+||||+|.++.++++..+..+|++||+||++++.|++.+.... ..++++++.+|+ .+.....++||+|++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~i~~~~~d~-~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG---LSDRITFVQGDA-EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT---TTTTEEEEESCC-HGGTTTSSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECcc-ccCcccCCCCCEEEEC
Confidence 578999999999999999996667899999999999999999984332 268999999998 4444556789999999
Q ss_pred C-CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 186 L-ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 186 ~-~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
. .... -.. .-...++++. ++++|+|||+++++.
T Consensus 78 ~~~~~~--~~~-~~~~~~~l~~-~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHF--LLP-LDERRRVLER-IRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGG--CCH-HHHHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCcccc--ccc-hhHHHHHHHH-HHHhcCCCcEEEEEE
Confidence 8 3111 000 0113478998 799999999999863
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=1.3e-13 Score=112.16 Aligned_cols=110 Identities=27% Similarity=0.366 Sum_probs=85.6
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEEEec
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFGD 185 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvIi~D 185 (339)
.+|||+|||+|.++..+++.. ..+++++|+||..+++++++++.... .++++++.+|+.+..+. ..++||+|++|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL---DDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT---TTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC---CceEEEEECchhhchhhccCceeEEEEEC
Confidence 489999999999999999876 68999999999999999999886532 57899999999988743 35889999999
Q ss_pred CCCCCCCC--ccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 186 LADPVEGG--PCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 186 ~~d~~~~~--p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++...... ....-...+|++. +.+.|+|||++++.
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~-~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEA-AARLLKPGGVLVFI 114 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred CCCccccccchhhHHHHHHHHHH-HHHHcCCCeEEEEE
Confidence 98532100 1111234689998 89999999999874
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=2.7e-12 Score=117.86 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=102.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC-CceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN-EKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~-~~yDvI 182 (339)
+..++|||||+|.|.++..+++..+..+|++|||++++.+.|+++...+.. .+|++++++|.-+|.+... .+||+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l---~~ri~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL---EERIQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc---hhceeEehhhHHHhhhcccccccCEE
Confidence 447899999999999999999876668999999999999999999987643 6899999999999987655 459999
Q ss_pred EecCCC--CCCC-C--cc-------ccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH
Q 019550 183 FGDLAD--PVEG-G--PC-------YQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV 244 (339)
Q Consensus 183 i~D~~d--~~~~-~--p~-------~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~ 244 (339)
+++||- .... . +. ..+.-+++.+. ++++|||||.+++- ...+.+.++...|++.
T Consensus 120 i~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~-a~~~lk~~G~l~~V-------~r~erl~ei~~~l~~~ 185 (248)
T COG4123 120 ICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRA-AAKLLKPGGRLAFV-------HRPERLAEIIELLKSY 185 (248)
T ss_pred EeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHH-HHHHccCCCEEEEE-------ecHHHHHHHHHHHHhc
Confidence 999972 1110 0 10 12223578887 89999999999863 3456778889999883
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=2.4e-12 Score=114.49 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=99.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+++.+|||||||+|..+..+++..+..+|+++|+++.+++.|+++...... ++++++.+|+.++- . .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l----~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL----KNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC----CCEEEEeccHhhCC-C-CCCccEEE
Confidence 447899999999999999888766778999999999999999998876532 34999999987743 3 56899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce-EEEEEeecccCCce
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV-VAYTAHVPSFADTW 262 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v-~~~~~~iP~~~~~~ 262 (339)
++.... -.++++. +.+.|+|||++++..++. ....+.++...+ .-.+ ..|...+|...+.-
T Consensus 118 ~~~~~~----------~~~~l~~-~~~~LkpGG~lv~~~~~~----~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~ 179 (187)
T PRK00107 118 SRAVAS----------LSDLVEL-CLPLLKPGGRFLALKGRD----PEEEIAELPKAL---GGKVEEVIELTLPGLDGER 179 (187)
T ss_pred EccccC----------HHHHHHH-HHHhcCCCeEEEEEeCCC----hHHHHHHHHHhc---CceEeeeEEEecCCCCCcE
Confidence 986421 2478888 799999999998875432 122222222222 2222 23444467765555
Q ss_pred eEEEEec
Q 019550 263 GWVMASD 269 (339)
Q Consensus 263 ~~~~as~ 269 (339)
.+++-.|
T Consensus 180 ~~~~~~~ 186 (187)
T PRK00107 180 HLVIIRK 186 (187)
T ss_pred EEEEEec
Confidence 5555443
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=2.3e-13 Score=119.05 Aligned_cols=129 Identities=20% Similarity=0.258 Sum_probs=93.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
..++|||||||+|.++..++++.+..+|+++|+++.+++.+++++..+.. ..++++..|..+.+. .++||+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~----~~v~~~~~d~~~~~~--~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL----ENVEVVQSDLFEALP--DGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC----TTEEEEESSTTTTCC--TTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc----ccccccccccccccc--ccceeEEEE
Confidence 57799999999999999999988777899999999999999999987643 239999999877654 578999999
Q ss_pred cCCCCCCCCcc-ccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEE
Q 019550 185 DLADPVEGGPC-YQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAY 251 (339)
Q Consensus 185 D~~d~~~~~p~-~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~ 251 (339)
++|-.. +.. ......+|++. ++++|+|||.+++-.... . ... +.+++.|..+...
T Consensus 105 NPP~~~--~~~~~~~~~~~~i~~-a~~~Lk~~G~l~lv~~~~---~---~~~---~~l~~~f~~~~~~ 160 (170)
T PF05175_consen 105 NPPFHA--GGDDGLDLLRDFIEQ-ARRYLKPGGRLFLVINSH---L---GYE---RLLKELFGDVEVV 160 (170)
T ss_dssp ---SBT--TSHCHHHHHHHHHHH-HHHHEEEEEEEEEEEETT---S---CHH---HHHHHHHS--EEE
T ss_pred ccchhc--ccccchhhHHHHHHH-HHHhccCCCEEEEEeecC---C---ChH---HHHHHhcCCEEEE
Confidence 998432 211 11234788998 899999999885532211 1 112 2378888877654
No 19
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.41 E-value=9.8e-12 Score=112.51 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=91.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHh-cCCcee
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEK-RNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~-~~~~yD 180 (339)
.++++||+||.+.|..+.+++...+ ..+++.+|+||+..+.|++++...+. +++++++. +|+.+.+.. ..++||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~---~~~i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV---DDRIELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC---cceEEEEecCcHHHHHHhccCCCcc
Confidence 4799999999999999999998766 77999999999999999999986653 57799999 699999986 568999
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|++|+.-+. .++||+. +-++|+|||++++-
T Consensus 135 liFIDadK~~---------yp~~le~-~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDADKAD---------YPEYLER-ALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCChhh---------CHHHHHH-HHHHhCCCcEEEEe
Confidence 9999987443 4599998 78999999999873
No 20
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.40 E-value=7.4e-12 Score=112.55 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=98.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH--hcCCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE--KRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~--~~~~~yDvI 182 (339)
+..+||+||||+|..+..+++..+..+|++||+++.+++.|++.+.... -++++++.+|+.+.+. ..+++||+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG----LTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC----CCCEEEEecCHHHHHHHHcCccccceE
Confidence 4678999999999999999887677899999999999999999876542 2679999999845454 235789999
Q ss_pred EecCCCCCCCCc--cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHC
Q 019550 183 FGDLADPVEGGP--CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVF 245 (339)
Q Consensus 183 i~D~~d~~~~~p--~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F 245 (339)
++..++|+...+ ...+....+++. +.+.|+|||++++.+. .......+.+.+++.-
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~-i~~~LkpgG~l~i~~~------~~~~~~~~~~~~~~~g 173 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLAL-YARKLKPGGEIHFATD------WEGYAEYMLEVLSAEG 173 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHH-HHHHcCCCCEEEEEcC------CHHHHHHHHHHHHhCc
Confidence 998776652111 112235789999 8999999999988642 3445666777777643
No 21
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.40 E-value=8e-12 Score=111.56 Aligned_cols=129 Identities=15% Similarity=0.228 Sum_probs=99.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yDvI 182 (339)
+..++|+||||+|.++..+++..|..++++||+++.+++.|++.....+ -++++++.+|+.+++... .+.+|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~----l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG----LKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC----CCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 4568999999999999999987788899999999999999998876442 258999999998876432 3589999
Q ss_pred EecCCCCCCCCc--cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH
Q 019550 183 FGDLADPVEGGP--CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV 244 (339)
Q Consensus 183 i~D~~d~~~~~p--~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~ 244 (339)
+++.++|+.... ...+...++++. +++.|+|||.+.+.+. ....+..+.+.+.+.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~-~~r~LkpgG~l~~~td------~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKE-YANVLKKGGVIHFKTD------NEPLFEDMLKVLSEN 148 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHH-HHHHhCCCCEEEEEeC------CHHHHHHHHHHHHhC
Confidence 999998863211 134556789998 8999999999988753 233455555555543
No 22
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.40 E-value=3.7e-12 Score=114.79 Aligned_cols=105 Identities=21% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-----CC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-----NE 177 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~ 177 (339)
.+|++||+||++.|..+.++++.. +..+|+.+|+|++..+.|+++|...+. ..+++++.+|+.++|... .+
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~---~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL---DDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG---GGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC---CCcEEEEEeccHhhHHHHHhccCCC
Confidence 478999999999999999999754 468999999999999999999986543 479999999999998753 24
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+||+|++|+.-.. -.++|+. +.+.|++||++++.
T Consensus 121 ~fD~VFiDa~K~~---------y~~y~~~-~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDADKRN---------YLEYFEK-ALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEESTGGG---------HHHHHHH-HHHHEEEEEEEEEE
T ss_pred ceeEEEEcccccc---------hhhHHHH-HhhhccCCeEEEEc
Confidence 7999999986321 2478888 68899999999875
No 23
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.39 E-value=1.3e-11 Score=113.52 Aligned_cols=104 Identities=23% Similarity=0.301 Sum_probs=86.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-----CC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-----NE 177 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~ 177 (339)
.++++||+||+|+|..+.++++. .+..+|+++|+|++.++.|++++...+. ..+++++.+|+.+.+... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl---~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV---DHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEEccHHHHHHHHHhCCCCC
Confidence 46889999999999998888875 4467999999999999999999976543 478999999999988653 36
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
+||+|++|...+. -.++++. +.+.|+|||++++
T Consensus 144 ~fD~VfiDa~k~~---------y~~~~~~-~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDADKPN---------YVHFHEQ-LLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCeEEEE
Confidence 8999999986432 2377888 7899999999886
No 24
>PLN02476 O-methyltransferase
Probab=99.37 E-value=1.9e-11 Score=114.57 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=88.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-----CC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-----NE 177 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~ 177 (339)
.++++||+||+|+|..+.++++.. +..+|+.+|+|++..+.|++++...+. .++++++.+|+.+.|+.. .+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl---~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV---SHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEEcCHHHHHHHHHhcccCC
Confidence 468999999999999999998743 356899999999999999999986543 479999999999998653 36
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+||+|++|+..+. -.++|+. +.+.|++||++++.
T Consensus 194 ~FD~VFIDa~K~~---------Y~~y~e~-~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDADKRM---------YQDYFEL-LLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCCHHH---------HHHHHHH-HHHhcCCCcEEEEe
Confidence 8999999987432 3488888 78999999999874
No 25
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=6e-12 Score=102.74 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=84.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...+||+||||.|..+..+++..+..+|+++|+++.+++.+++++.... .++++++.+|+...+....++||+|++
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG----VSNIVIVEGDAPEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC----CCceEEEeccccccChhhcCCCCEEEE
Confidence 4568999999999999999987667899999999999999999876542 357899999976544444568999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+..... ..++++. +.+.|+|||.++++.
T Consensus 95 ~~~~~~---------~~~~l~~-~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 95 GGSGGL---------LQEILEA-IWRRLRPGGRIVLNA 122 (124)
T ss_pred CCcchh---------HHHHHHH-HHHHcCCCCEEEEEe
Confidence 754211 2488998 899999999999864
No 26
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.3e-12 Score=128.76 Aligned_cols=170 Identities=15% Similarity=0.197 Sum_probs=133.9
Q ss_pred hHHHHHhh-hhccc------CCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeE
Q 019550 90 IYHECLIH-PPLLC------HQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLN 162 (339)
Q Consensus 90 ~Y~e~l~~-~~l~~------~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~ 162 (339)
.||.+|.. .++.. +....++|++|.|+|+++..+..+.|..++++||+||++++.|+.||.+.. +.|.+
T Consensus 273 ~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q----~~r~~ 348 (482)
T KOG2352|consen 273 QYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ----SDRNK 348 (482)
T ss_pred chhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh----hhhhh
Confidence 57877653 33332 233578999999999999999988898999999999999999999999864 35899
Q ss_pred EEEccHHHHHHhcC------CceeEEEecCCCCCC---CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhh
Q 019550 163 LVVNDAKAELEKRN------EKFDVIFGDLADPVE---GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEV 233 (339)
Q Consensus 163 v~~~D~~~~l~~~~------~~yDvIi~D~~d~~~---~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~ 233 (339)
+++.||.+|++++. ..||+++.|...+.. ..|+....+.++++. ++..|.|.|++++|..++ +...
T Consensus 349 V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~-~k~~l~p~g~f~inlv~r----~~~~ 423 (482)
T KOG2352|consen 349 VHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQP-VKMILPPRGMFIINLVTR----NSSF 423 (482)
T ss_pred hhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHH-HhhccCccceEEEEEecC----Ccch
Confidence 99999999998752 469999998753211 245667778899999 899999999999997543 4556
Q ss_pred HHHHHHHHHhHCCceEEEEEeecccCCceeEEEEecCCC
Q 019550 234 FSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPF 272 (339)
Q Consensus 234 ~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~p~ 272 (339)
...+...|+++|++...+.. ..+.+..++|...|.
T Consensus 424 ~~~~~~~l~~vf~~l~~~~~----~~~~N~il~~~~~~~ 458 (482)
T KOG2352|consen 424 KDEVLMNLAKVFPQLYHHQL----EEDVNEILIGQMPPK 458 (482)
T ss_pred hHHHHHhhhhhhHHHhhhhc----cCCCceeEEeecChh
Confidence 77899999999998865542 235566788887663
No 27
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.35 E-value=4.8e-11 Score=117.33 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=116.6
Q ss_pred CCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcC
Q 019550 59 EFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 59 ~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid 138 (339)
|.|+|.=... .+|..+.++-....+.++. +.++...+...++..+|||||||+|.++..+++..+..+|+++|+|
T Consensus 210 PlqYIlG~~~-F~G~~f~V~p~vLIPRpeT----E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS 284 (423)
T PRK14966 210 PVAYILGVRE-FYGRRFAVNPNVLIPRPET----EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDIS 284 (423)
T ss_pred CceeEeeeee-ecCcEEEeCCCccCCCccH----HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECC
Confidence 5566554322 2466666665544444442 2222222111234568999999999999998876677899999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC-CCC----------CCccccCC--------
Q 019550 139 QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD-PVE----------GGPCYQLY-------- 199 (339)
Q Consensus 139 ~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-~~~----------~~p~~~L~-------- 199 (339)
+++++.|+++.... ..+++++.+|..+......++||+|++|+|- +.. ..|...|+
T Consensus 285 ~~ALe~AreNa~~~-----g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~ 359 (423)
T PRK14966 285 PPALETARKNAADL-----GARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC 359 (423)
T ss_pred HHHHHHHHHHHHHc-----CCcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHH
Confidence 99999999998654 2479999999865421123579999999973 110 01111122
Q ss_pred cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEEEEEeecccCCceeEEEEec
Q 019550 200 TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSFADTWGWVMASD 269 (339)
Q Consensus 200 t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~iP~~~~~~~~~~as~ 269 (339)
-+.+++. +.+.|+|||.+++..+. .+. ..+.+.+++. |..+.. .+.+.+...++++.+
T Consensus 360 yr~Ii~~-a~~~LkpgG~lilEiG~----~Q~---e~V~~ll~~~Gf~~v~v----~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 360 IRTLAQG-APDRLAEGGFLLLEHGF----DQG---AAVRGVLAENGFSGVET----LPDLAGLDRVTLGKY 418 (423)
T ss_pred HHHHHHH-HHHhcCCCcEEEEEECc----cHH---HHHHHHHHHCCCcEEEE----EEcCCCCcEEEEEEE
Confidence 1244444 46799999999887642 222 3344444443 444443 244555566777654
No 28
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.35 E-value=1.3e-11 Score=109.26 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++++|||||||+|.++..+++..+..+|++||+++++++.++++....+ -++++++.+|+.++. ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~----~~~i~~i~~d~~~~~--~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG----LNNVEIVNGRAEDFQ--HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC----CCCeEEEecchhhcc--ccCCccEEEe
Confidence 4789999999999999988876667899999999999999998876543 246999999988752 3578999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+.... -.++++. +.+.|+|||++++..+
T Consensus 116 ~~~~~----------~~~~~~~-~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 116 RALAS----------LNVLLEL-TLNLLKVGGYFLAYKG 143 (181)
T ss_pred hhhhC----------HHHHHHH-HHHhcCCCCEEEEEcC
Confidence 86211 2367887 7999999999998754
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.35 E-value=3.9e-11 Score=106.21 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=92.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||||+|.++..+++..+..+|+++|+++.+++.+++++.... -++++++.+|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~----~~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG----CGNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCeEEEecCchhhc---CcCCCEEE
Confidence 45679999999999999999987777899999999999999999886543 257999999975332 46799999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVA 250 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~ 250 (339)
++.... ...++++. +.+.|+|||.++++... ......+.+.+++. |..+..
T Consensus 103 ~~~~~~---------~~~~~l~~-~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSGG---------NLTAIIDW-SLAHLHPGGRLVLTFIL------LENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCcc---------CHHHHHHH-HHHhcCCCeEEEEEEec------HhhHHHHHHHHHHCCCCcceE
Confidence 975421 12578888 79999999999886421 22344556666654 333443
No 30
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=5.9e-11 Score=106.18 Aligned_cols=131 Identities=21% Similarity=0.181 Sum_probs=98.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
....+|||+|||+|.++.++++.. +..+|+++|+++.+++.+++++...+. ..+++++.+|+.+++....++||.|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---~~~v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---LNNIVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCCeEEEEechhhhHhhcCCCCCEE
Confidence 456789999999999999988753 457899999999999999999865431 3679999999988876655789999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEE
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTA 253 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~ 253 (339)
+++..... ..++++. +.+.|+|||.+++... ..+.+..+.+.+++..-.+....+
T Consensus 116 ~~~~~~~~---------~~~~l~~-~~~~LkpgG~lv~~~~------~~~~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 116 FIGGGSEK---------LKEIISA-SWEIIKKGGRIVIDAI------LLETVNNALSALENIGFNLEITEV 170 (198)
T ss_pred EECCCccc---------HHHHHHH-HHHHcCCCcEEEEEee------cHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99653211 2477888 7899999999987542 334566777777665435554443
No 31
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.33 E-value=3.1e-11 Score=114.12 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=86.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+.+|||+|||+|.++..++++.+..+|+++|+|+.+++.|+++...++. ..+++++.+|+.+.+. .++||+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~---~~~i~~~~~D~~~~~~--~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL---EDRVTLIQSDLFAALP--GRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEECchhhccC--CCCccEEEE
Confidence 46789999999999999999877778999999999999999999875532 3689999999876552 357999999
Q ss_pred cCCCCCCC-----------CccccC--------CcHHHHHHHHccccCCCcEEEEecC
Q 019550 185 DLADPVEG-----------GPCYQL--------YTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~-----------~p~~~L--------~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
|+|--... .|...| +.+.+++. +.+.|+|||.+++..+
T Consensus 196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~-a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAE-AADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 98731100 011111 12456777 6889999999999865
No 32
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=120.85 Aligned_cols=131 Identities=16% Similarity=0.233 Sum_probs=95.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
..+|||||||+|.++..+++..|..+|++||+++.+++.|++++..+... ...+++++.+|+.+.+ ..++||+|+++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~-~~~~v~~~~~D~l~~~--~~~~fDlIlsN 305 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE-ALDRCEFMINNALSGV--EPFRFNAVLCN 305 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc-cCceEEEEEccccccC--CCCCEEEEEEC
Confidence 46899999999999999998777889999999999999999998755310 1247899999986544 23589999999
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEE
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVA 250 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~ 250 (339)
++-......... ...++++. ++++|+|||.+.+-.. .. ......|++.|..+..
T Consensus 306 PPfh~~~~~~~~-ia~~l~~~-a~~~LkpGG~L~iV~n-----r~----l~y~~~L~~~fg~~~~ 359 (378)
T PRK15001 306 PPFHQQHALTDN-VAWEMFHH-ARRCLKINGELYIVAN-----RH----LDYFHKLKKIFGNCTT 359 (378)
T ss_pred cCcccCccCCHH-HHHHHHHH-HHHhcccCCEEEEEEe-----cC----cCHHHHHHHHcCCceE
Confidence 874321001111 13578888 7999999998876531 11 1244667778887765
No 33
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.32 E-value=4.3e-11 Score=105.00 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=105.1
Q ss_pred HHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH
Q 019550 93 ECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL 172 (339)
Q Consensus 93 e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l 172 (339)
++++ +..+...+...++|||||+|+++.+++...|..+|+++|-|++.++..+++....+ -++++++.+|+-+.|
T Consensus 23 Ral~-ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg----~~n~~vv~g~Ap~~L 97 (187)
T COG2242 23 RALT-LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG----VDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHH-HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC----CCcEEEEeccchHhh
Confidence 3444 33333345678999999999999999987888999999999999999999986553 489999999999999
Q ss_pred HhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCC
Q 019550 173 EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFK 246 (339)
Q Consensus 173 ~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~ 246 (339)
...+ ++|.|++...-. -.+.++. +..+|++||.+|+|.. ..+....+.+.+++.-.
T Consensus 98 ~~~~-~~daiFIGGg~~----------i~~ile~-~~~~l~~ggrlV~nai------tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 98 PDLP-SPDAIFIGGGGN----------IEEILEA-AWERLKPGGRLVANAI------TLETLAKALEALEQLGG 153 (187)
T ss_pred cCCC-CCCEEEECCCCC----------HHHHHHH-HHHHcCcCCeEEEEee------cHHHHHHHHHHHHHcCC
Confidence 8655 899999987722 2477888 7899999999999963 34566677778877644
No 34
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=2.1e-11 Score=114.31 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=96.1
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
..+|||+|||.|.++..+++..|..++++||+|...++.||++...+.. ++.+++..|..+-+ .++||+||++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~----~~~~v~~s~~~~~v---~~kfd~IisN 231 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV----ENTEVWASNLYEPV---EGKFDLIISN 231 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC----CccEEEEecccccc---cccccEEEeC
Confidence 3489999999999999999999999999999999999999999987642 33378888875544 3489999999
Q ss_pred CCCCCCCCcc-ccCCcHHHHHHHHccccCCCcEEE--EecCCCCccCchhhHHHHHHHHHhHCCceEEE
Q 019550 186 LADPVEGGPC-YQLYTKSFYERILKPKLNDNGIFV--TQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAY 251 (339)
Q Consensus 186 ~~d~~~~~p~-~~L~t~ef~~~~~~~~L~~gGilv--~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~ 251 (339)
||-.. |.. ..-...++++. ++++|++||-|. .|... .+...|++.|.++...
T Consensus 232 PPfh~--G~~v~~~~~~~~i~~-A~~~L~~gGeL~iVan~~l-----------~y~~~L~~~Fg~v~~l 286 (300)
T COG2813 232 PPFHA--GKAVVHSLAQEIIAA-AARHLKPGGELWIVANRHL-----------PYEKKLKELFGNVEVL 286 (300)
T ss_pred CCccC--CcchhHHHHHHHHHH-HHHhhccCCEEEEEEcCCC-----------ChHHHHHHhcCCEEEE
Confidence 98543 211 11124589998 899999999664 44211 2346788999988764
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.30 E-value=6.3e-12 Score=107.51 Aligned_cols=106 Identities=18% Similarity=0.315 Sum_probs=84.4
Q ss_pred CCCeEEEEecchhHHHHHHH-hcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREAL-KHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvI 182 (339)
+..+|||+|||+|.++..++ +..+..++++||+++++++.|++.+.... -++++++.+|..+ +... .++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~----~~ni~~~~~d~~~-l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG----LDNIEFIQGDIED-LPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT----STTEEEEESBTTC-GCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc----ccccceEEeehhc-cccccCCCeeEE
Confidence 56799999999999999999 55667899999999999999999876543 3589999999988 5432 2789999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+++..-.. .+ ....+++. +.+.|+++|++++..
T Consensus 78 ~~~~~l~~--~~----~~~~~l~~-~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 78 ISNGVLHH--FP----DPEKVLKN-IIRLLKPGGILIISD 110 (152)
T ss_dssp EEESTGGG--TS----HHHHHHHH-HHHHEEEEEEEEEEE
T ss_pred EEcCchhh--cc----CHHHHHHH-HHHHcCCCcEEEEEE
Confidence 99976321 00 12478888 799999999998764
No 36
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.30 E-value=5.7e-11 Score=117.15 Aligned_cols=139 Identities=27% Similarity=0.204 Sum_probs=97.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDv 181 (339)
+.++||++|||+|+++..++. .+..+|++||+|+.+++.|++++..++. +..+++++.+|++++++.. .++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl--~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKL--DLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC--CCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 468999999999999887765 4567999999999999999999987642 2258999999999998652 468999
Q ss_pred EEecCCCCCCCCccccCCc-----HHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEE
Q 019550 182 IFGDLADPVEGGPCYQLYT-----KSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVA 250 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t-----~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~ 250 (339)
|++|+|.-.. .. ..+.+ .++++. +.++|+|||++++-+++.. .....+.+.+.+...+.-..+..
T Consensus 297 VilDPP~f~~-~k-~~l~~~~~~y~~l~~~-a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 297 IVMDPPKFVE-NK-SQLMGACRGYKDINML-AIQLLNPGGILLTFSCSGL-MTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred EEECCCCCCC-Ch-HHHHHHHHHHHHHHHH-HHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHHHHHcCCeEEE
Confidence 9999984210 10 11111 234455 5789999999987665542 22233344444455555555544
No 37
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.30 E-value=7.9e-11 Score=119.71 Aligned_cols=188 Identities=15% Similarity=0.241 Sum_probs=119.3
Q ss_pred CCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhccc--------------------------CCCCCeEEEE
Q 019550 59 EFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLC--------------------------HQNPKTVFIM 112 (339)
Q Consensus 59 ~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~--------------------------~~~p~~VL~I 112 (339)
|-|+|.=.. +.+|+.+.+|-.+..+.++. |.++...+.. ..++.+||+|
T Consensus 71 PlqYI~G~~-~F~g~~f~V~~~VLIPRpeT----E~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDl 145 (506)
T PRK01544 71 PIAYITGVK-EFYSREFIVNKHVLIPRSDT----EVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILEL 145 (506)
T ss_pred CHHHHhCcC-EEcCcEEEeCCCcccCCCcH----HHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEc
Confidence 555554322 22578888998888887762 3333221100 1135689999
Q ss_pred ecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCC-C
Q 019550 113 GGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPV-E 191 (339)
Q Consensus 113 G~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~-~ 191 (339)
|||+|.++..+++..+..+|+++|+|+.+++.|+++...++. ..+++++.+|..+.+. .++||+|+++++--. .
T Consensus 146 G~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l---~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~ 220 (506)
T PRK01544 146 GTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV---TDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHS 220 (506)
T ss_pred cCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC---ccceeeeecchhhhCc--CCCccEEEECCCCCCch
Confidence 999999999988766778999999999999999999765432 3689999999876542 357999999997211 0
Q ss_pred -----------CCccccCC----c----HHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEEE
Q 019550 192 -----------GGPCYQLY----T----KSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAY 251 (339)
Q Consensus 192 -----------~~p~~~L~----t----~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~~ 251 (339)
..|...|+ . ..+++. +.+.|+|||.+++..+. .+.+ .+.+.+.+. |..+..
T Consensus 221 ~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~-a~~~L~~gG~l~lEig~----~q~~---~v~~~~~~~g~~~~~~- 291 (506)
T PRK01544 221 EKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN-AKQFLKPNGKIILEIGF----KQEE---AVTQIFLDHGYNIESV- 291 (506)
T ss_pred hhhhcCchhhccCcHHHhcCCccHHHHHHHHHHH-HHHhccCCCEEEEEECC----chHH---HHHHHHHhcCCCceEE-
Confidence 01211232 1 234455 56899999999987642 2222 334444443 433333
Q ss_pred EEeecccCCceeEEEEe
Q 019550 252 TAHVPSFADTWGWVMAS 268 (339)
Q Consensus 252 ~~~iP~~~~~~~~~~as 268 (339)
.+.+.+...+++++
T Consensus 292 ---~~D~~g~~R~v~~~ 305 (506)
T PRK01544 292 ---YKDLQGHSRVILIS 305 (506)
T ss_pred ---EecCCCCceEEEec
Confidence 23455545555554
No 38
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.29 E-value=2.4e-10 Score=107.98 Aligned_cols=145 Identities=18% Similarity=0.232 Sum_probs=97.5
Q ss_pred ceEEEEEcCeeeccccChhhHHHH-HhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhh
Q 019550 71 FGKVLVIDGKMQSAEVDEFIYHEC-LIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFL 149 (339)
Q Consensus 71 ~g~~L~ldG~~q~~~~d~~~Y~e~-l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f 149 (339)
+|+.+.++.......++.....+. +.. +.......+|||+|||+|.++..+++..+..+|+++|+++++++.|+++.
T Consensus 81 ~g~~f~v~~~vliPr~ete~lv~~~l~~--~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHVLIPRPETEELVEKALAS--LISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCCcCCCCccHHHHHHHHHH--hhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 466777766555544442221221 111 11112226899999999999999998777789999999999999999998
Q ss_pred hhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCC-----------CCccccC--------CcHHHHHHHHcc
Q 019550 150 TVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVE-----------GGPCYQL--------YTKSFYERILKP 210 (339)
Q Consensus 150 ~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~-----------~~p~~~L--------~t~ef~~~~~~~ 210 (339)
..... ..+++++.+|..+.+. ..+||+|++|++--.. ..|...| +-+.+++. +.+
T Consensus 159 ~~~~~---~~~v~~~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~-a~~ 232 (284)
T TIGR00536 159 EKNQL---EHRVEFIQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL-APD 232 (284)
T ss_pred HHcCC---CCcEEEEECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH-HHH
Confidence 65432 3579999999876542 2379999999873110 0111111 12456666 678
Q ss_pred ccCCCcEEEEecC
Q 019550 211 KLNDNGIFVTQAG 223 (339)
Q Consensus 211 ~L~~gGilv~~~~ 223 (339)
.|+|||++++..+
T Consensus 233 ~L~~gG~l~~e~g 245 (284)
T TIGR00536 233 YLKPNGFLVCEIG 245 (284)
T ss_pred hccCCCEEEEEEC
Confidence 9999999999875
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=7e-11 Score=112.87 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=86.2
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|+++...++. ..+++++.+|..+.+. .++||+|++|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l---~~~i~~~~~D~~~~l~--~~~fDlIvsN 208 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL---EDRVTLIESDLFAALP--GRRYDLIVSN 208 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCcEEEEECchhhhCC--CCCccEEEEC
Confidence 3789999999999999999877778999999999999999999875532 3579999999877653 3579999999
Q ss_pred CCCCC-C----------CCccccCC--------cHHHHHHHHccccCCCcEEEEecC
Q 019550 186 LADPV-E----------GGPCYQLY--------TKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 186 ~~d~~-~----------~~p~~~L~--------t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+|--. . ..|...|+ .+.+++. +.+.|+|||.+++..+
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~-a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE-APDYLTEDGVLVVEVG 264 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH-HHHhcCCCCEEEEEEC
Confidence 86311 0 01111111 2466777 6889999999999865
No 40
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.29 E-value=2.2e-10 Score=107.12 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=84.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+||++|||+|..+..++++.+..+++++|+++.+++.|++++... ...+++++.+|..+.+. .++||+|+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~----~~~~i~~~~~d~~~~~~--~~~fD~Iv 180 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG----LGARVEFLQGDWFEPLP--GGRFDLIV 180 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC----CCCcEEEEEccccCcCC--CCceeEEE
Confidence 3467899999999999999998877789999999999999999998721 14689999999854332 36899999
Q ss_pred ecCCCCCC------------CCccccCCc--------HHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVE------------GGPCYQLYT--------KSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~------------~~p~~~L~t--------~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
++++--.. ..|...++. ..+++. +.+.|+|||.+++..+
T Consensus 181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~-~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ-APRYLKPGGWLLLEIG 239 (275)
T ss_pred ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 99863110 011111221 456666 6789999999999764
No 41
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.7e-10 Score=108.86 Aligned_cols=142 Identities=20% Similarity=0.270 Sum_probs=99.0
Q ss_pred ceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhh
Q 019550 71 FGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLT 150 (339)
Q Consensus 71 ~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~ 150 (339)
+|..+.++-.+....+|...-.+.+. .......+ +|||||||+|.++..+++..+..+|+++||||..+++|+++..
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l--~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAAL--ALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHH--HhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 36777777777777777433333322 11111122 8999999999999999998888899999999999999999988
Q ss_pred hhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC-CCC----------CCccccC--------CcHHHHHHHHccc
Q 019550 151 VNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD-PVE----------GGPCYQL--------YTKSFYERILKPK 211 (339)
Q Consensus 151 ~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-~~~----------~~p~~~L--------~t~ef~~~~~~~~ 211 (339)
.++. .++.++.+|..+ ...++||+|++|||- |.. ..|...| ....|... +.+.
T Consensus 156 ~~~l----~~~~~~~~dlf~---~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~-a~~~ 227 (280)
T COG2890 156 RNGL----VRVLVVQSDLFE---PLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGE-APDI 227 (280)
T ss_pred HcCC----ccEEEEeeeccc---ccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHh-hHHH
Confidence 7642 456666666544 344599999999982 111 0111111 12456666 6789
Q ss_pred cCCCcEEEEecC
Q 019550 212 LNDNGIFVTQAG 223 (339)
Q Consensus 212 L~~gGilv~~~~ 223 (339)
|+|||++++..+
T Consensus 228 l~~~g~l~le~g 239 (280)
T COG2890 228 LKPGGVLILEIG 239 (280)
T ss_pred cCCCcEEEEEEC
Confidence 999999999875
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.26 E-value=2.7e-10 Score=105.74 Aligned_cols=131 Identities=22% Similarity=0.242 Sum_probs=90.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+++|||+|||+|.++..+++ .+..+|+++|+|+.+++.|++++..+.. ..++.+..+|. +||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~---~~~~~~~~~~~---------~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGV---ELNVYLPQGDL---------KADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEccCCC---------CcCEEE
Confidence 4578999999999999998776 4556799999999999999999876532 23455544432 799999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEEEEEeecccCCce
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAYTAHVPSFADTW 262 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~~~~~iP~~~~~~ 262 (339)
++..... ...+++. +.+.|+|||.+++..- .......+.+.+++. |..+.... .+.|
T Consensus 185 ani~~~~---------~~~l~~~-~~~~LkpgG~lilsgi------~~~~~~~v~~~l~~~Gf~~~~~~~------~~~W 242 (250)
T PRK00517 185 ANILANP---------LLELAPD-LARLLKPGGRLILSGI------LEEQADEVLEAYEEAGFTLDEVLE------RGEW 242 (250)
T ss_pred EcCcHHH---------HHHHHHH-HHHhcCCCcEEEEEEC------cHhhHHHHHHHHHHCCCEEEEEEE------eCCE
Confidence 9864211 2367777 7899999999998642 122345666777665 33332221 3457
Q ss_pred eEEEEec
Q 019550 263 GWVMASD 269 (339)
Q Consensus 263 ~~~~as~ 269 (339)
..+++.+
T Consensus 243 ~~~~~~~ 249 (250)
T PRK00517 243 VALVGKK 249 (250)
T ss_pred EEEEEEe
Confidence 7666654
No 43
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.26 E-value=2.8e-10 Score=102.20 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=97.1
Q ss_pred eEEEEEeCCceEEEEE-cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHH
Q 019550 62 DIALLDTKRFGKVLVI-DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQE 140 (339)
Q Consensus 62 ~I~V~e~~~~g~~L~l-dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~ 140 (339)
.+.|+.....|+.|.. ++...-.+.+ ..+..++..+. ...+..+|||+|||+|.++.+++.. ...+|++||+|++
T Consensus 12 ~mrIi~g~~~g~~l~~~~~~~~Rp~~d-~v~e~l~~~l~--~~~~~~~vLDl~~GsG~l~l~~lsr-~a~~V~~vE~~~~ 87 (199)
T PRK10909 12 QIRIIGGQWRGRKLPVPDSPGLRPTTD-RVRETLFNWLA--PVIVDARCLDCFAGSGALGLEALSR-YAAGATLLEMDRA 87 (199)
T ss_pred CEEEEeeccCCCEeCCCCCCCcCcCCH-HHHHHHHHHHh--hhcCCCEEEEcCCCccHHHHHHHHc-CCCEEEEEECCHH
Confidence 4777776666777654 2211111111 12222222121 1124579999999999999987653 4579999999999
Q ss_pred HHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHc--cccCCCcEE
Q 019550 141 VVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILK--PKLNDNGIF 218 (339)
Q Consensus 141 vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~--~~L~~gGil 218 (339)
+++.+++++..++. .+++++.+|+.+++....++||+|++|||-.. + +..+.++. +. ..|+|+|++
T Consensus 88 a~~~a~~Nl~~~~~----~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~--g-----~~~~~l~~-l~~~~~l~~~~iv 155 (199)
T PRK10909 88 VAQQLIKNLATLKA----GNARVVNTNALSFLAQPGTPHNVVFVDPPFRK--G-----LLEETINL-LEDNGWLADEALI 155 (199)
T ss_pred HHHHHHHHHHHhCC----CcEEEEEchHHHHHhhcCCCceEEEECCCCCC--C-----hHHHHHHH-HHHCCCcCCCcEE
Confidence 99999999876642 47999999999988654457999999998422 2 12344454 33 358999999
Q ss_pred EEec
Q 019550 219 VTQA 222 (339)
Q Consensus 219 v~~~ 222 (339)
++..
T Consensus 156 ~ve~ 159 (199)
T PRK10909 156 YVES 159 (199)
T ss_pred EEEe
Confidence 9875
No 44
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.26 E-value=1e-10 Score=114.22 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=101.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi 183 (339)
+...+|+||||+|..+..+++..|...+++||+++.+++.|.+.....+ -++++++.+|++.++... .+.+|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g----L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN----LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC----CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 3458999999999999999987788899999999999999998876543 367999999998776433 47899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
+..++||...+..++...+|++. +++.|+|||.+.+.+.+ ...+..+.+.+.+
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e-~~RvLkpGG~l~l~TD~------~~y~~~~~e~~~~ 250 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNE-ALRVLKPGGTLELRTDS------ELYFEFSLELFLK 250 (390)
T ss_pred EeCCCCccccchhhccHHHHHHH-HHHHcCCCcEEEEEEEC------HHHHHHHHHHHHh
Confidence 99999984333345777899999 89999999999887532 3345555555543
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.25 E-value=2.9e-10 Score=104.55 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=85.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+||++|||+|..+..+++..+..+++++|+++.+++.|++++.... -++++++.+|+.+.+ ..++||+|+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~--~~~~fD~Vi 159 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG----LDNVTFLQSDWFEPL--PGGKFDLIV 159 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhccC--cCCceeEEE
Confidence 34678999999999999999987777899999999999999999986543 247999999987644 247899999
Q ss_pred ecCCCCCCC------------CccccC--------CcHHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVEG------------GPCYQL--------YTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~~------------~p~~~L--------~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+|++-.... .|...+ .-..+++. +.+.|+|||.+++..+
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~-~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ-APRLLKPGGWLLLEIG 218 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH-HHHhcccCCEEEEEEC
Confidence 998732100 000000 01367787 7899999999998753
No 46
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.24 E-value=3.3e-10 Score=101.11 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=83.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
....+||++|||+|.++.++++..+..+|++||+|+++++.+++++.... -++++++.+|+.+.+......+|.|+
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG----VKNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCeEEEECchHHHHhhCCCCCCEEE
Confidence 34578999999999999999876666899999999999999999986543 25799999999776554445678888
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++...+ -.++++. +.+.|+|||.+++..
T Consensus 115 ~~~~~~----------~~~~l~~-~~~~LkpgG~li~~~ 142 (196)
T PRK07402 115 IEGGRP----------IKEILQA-VWQYLKPGGRLVATA 142 (196)
T ss_pred EECCcC----------HHHHHHH-HHHhcCCCeEEEEEe
Confidence 874311 2478888 789999999999875
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=6.4e-11 Score=110.03 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=83.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+.+||++|||+|..+..+++. ..+|++||+++++++.|+++...... .++++++.+|+.+......++||+|+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~---~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGV---SDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC---ccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 45689999999999999999884 36899999999999999998764321 46899999998875444457899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-..... ...+++. +.+.|+|||++++.
T Consensus 118 ~~~vl~~~~~------~~~~l~~-~~~~LkpgG~l~i~ 148 (255)
T PRK11036 118 FHAVLEWVAD------PKSVLQT-LWSVLRPGGALSLM 148 (255)
T ss_pred ehhHHHhhCC------HHHHHHH-HHHHcCCCeEEEEE
Confidence 8754221011 2477888 79999999999865
No 48
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.22 E-value=1.2e-10 Score=107.85 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=88.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc------C
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR------N 176 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~------~ 176 (339)
.+|++||+||++.|..+.++++. ++..+|+.+|+|++..+.|+++|...+. ..+++++.+|+.+.|... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~---~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV---AHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC---CCceEEEeccHHHHHHHHHhccccC
Confidence 46899999999999999988864 4467999999999999999999986543 479999999999998763 2
Q ss_pred CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 177 EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++||+|++|..... ..++|+. +.+.|++||++++.
T Consensus 155 ~~fD~iFiDadK~~---------Y~~y~~~-~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDN---------YINYHKR-LIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHH---------hHHHHHH-HHHhcCCCeEEEEc
Confidence 68999999987321 3488888 78999999999864
No 49
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.22 E-value=1.6e-10 Score=113.05 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=99.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC---CceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN---EKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~---~~yDv 181 (339)
+.++||.+-|=+|+.+..++. .++.+||.||+|..+++.|++++.+++ ++..+.+++++|+++||+... ++||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNG--LDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcC--CCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 378999999999999998887 577799999999999999999999885 346789999999999998754 49999
Q ss_pred EEecCCCCCCCCccccCCc-----HHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce
Q 019550 182 IFGDLADPVEGGPCYQLYT-----KSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t-----~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v 248 (339)
||+|||.=.. ++ ..++. .+.+.. +.++|+|||++++.+.+.. .....+...+.+.+...-..+
T Consensus 294 IilDPPsF~r-~k-~~~~~~~rdy~~l~~~-~~~iL~pgG~l~~~s~~~~-~~~~~f~~~i~~a~~~~~~~~ 361 (393)
T COG1092 294 IILDPPSFAR-SK-KQEFSAQRDYKDLNDL-ALRLLAPGGTLVTSSCSRH-FSSDLFLEIIARAAAAAGRRA 361 (393)
T ss_pred EEECCccccc-Cc-ccchhHHHHHHHHHHH-HHHHcCCCCEEEEEecCCc-cCHHHHHHHHHHHHHhcCCcE
Confidence 9999984211 11 11121 133444 4689999999988765542 223334444445554443333
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.21 E-value=1.8e-10 Score=111.65 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=92.2
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
..+|||||||+|.++..+++..+..+|+++|+++.+++.|++++..+. -..+++..|+...+ .++||+|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-----l~~~~~~~D~~~~~---~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-----LEGEVFASNVFSDI---KGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CCCEEEEccccccc---CCCccEEEEC
Confidence 468999999999999999987777899999999999999999987653 23577888876543 5789999999
Q ss_pred CCCCCCCCcc-ccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEE
Q 019550 186 LADPVEGGPC-YQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAY 251 (339)
Q Consensus 186 ~~d~~~~~p~-~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~ 251 (339)
++-.. +.. ..-...+|++. +.++|+|||.+++-... +.. .-..+.+.|..+...
T Consensus 269 PPFH~--g~~~~~~~~~~~i~~-a~~~LkpgG~L~iVan~---~l~------y~~~l~~~Fg~~~~l 323 (342)
T PRK09489 269 PPFHD--GIQTSLDAAQTLIRG-AVRHLNSGGELRIVANA---FLP------YPDLLDETFGSHEVL 323 (342)
T ss_pred CCccC--CccccHHHHHHHHHH-HHHhcCcCCEEEEEEeC---CCC------hHHHHHHHcCCeEEE
Confidence 87432 110 01123688998 89999999988654321 111 124556788887654
No 51
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=8.6e-11 Score=108.80 Aligned_cols=108 Identities=17% Similarity=0.297 Sum_probs=81.6
Q ss_pred CCCCeEEEEecchhHHHHHHHh--cCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 104 QNPKTVFIMGGGEGSAAREALK--HKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~--~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
++..+||+||||+|..+..+++ ..+..++++||+++.+++.|++++..... ..+++++.+|+.+. ..+.+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~---~~~v~~~~~d~~~~---~~~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---PTPVDVIEGDIRDI---AIENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---CCCeEEEeCChhhC---CCCCCCE
Confidence 4567899999999999988876 34678999999999999999999865321 35899999997653 2246999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++...-... .+ . ....+++. +++.|+|||.+++..
T Consensus 129 vv~~~~l~~l-~~-~--~~~~~l~~-i~~~LkpGG~l~l~e 164 (247)
T PRK15451 129 VVLNFTLQFL-EP-S--ERQALLDK-IYQGLNPGGALVLSE 164 (247)
T ss_pred EehhhHHHhC-CH-H--HHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9987542210 01 0 12478898 799999999998753
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.19 E-value=3.5e-10 Score=107.14 Aligned_cols=121 Identities=26% Similarity=0.305 Sum_probs=88.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.++||++|||+|.++..+++ .+..+|++||+|+.+++.|++++..+.. ..++.+..+|... ...++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~---~~~~~~~~~~~~~---~~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQV---SDRLQVKLIYLEQ---PIEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCC---CcceEEEeccccc---ccCCCceEEEE
Confidence 468999999999999988887 4567999999999999999999876542 3567777776322 23468999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v 248 (339)
+..... ..+++.. +.+.|+|||.+++..- .......+.+.+++.|..+
T Consensus 232 n~~~~~---------l~~ll~~-~~~~LkpgG~li~sgi------~~~~~~~v~~~~~~~f~~~ 279 (288)
T TIGR00406 232 NILAEV---------IKELYPQ-FSRLVKPGGWLILSGI------LETQAQSVCDAYEQGFTVV 279 (288)
T ss_pred ecCHHH---------HHHHHHH-HHHHcCCCcEEEEEeC------cHhHHHHHHHHHHccCcee
Confidence 865211 2467888 7899999999988631 1233456666666655443
No 53
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.19 E-value=2.3e-10 Score=120.64 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=89.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.++||++|||+|+++..+++. +..+|++||+|+.+++.|++++..++. +..+++++.+|+.++++...++||+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~--~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGL--SGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC--CccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 4689999999999999999984 667899999999999999999987643 2358999999999999766678999999
Q ss_pred cCCCCCCCCccccCC-----cHHHHHHHHccccCCCcEEEEecCC
Q 019550 185 DLADPVEGGPCYQLY-----TKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 185 D~~d~~~~~p~~~L~-----t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
|+|.-.......... -.+.++. +.++|+|||++++.+.+
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~-a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKD-AKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEeCC
Confidence 998421000000010 1345666 67899999999886543
No 54
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.19 E-value=6.1e-10 Score=103.51 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=88.6
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvIi~ 184 (339)
+.+|||+|||+|.++..+++..+..+|++||+|+.+++.|++++..++ ++++.+|..+++.. ..++||+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------GTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CEEEEeechhhcchhcCCCEeEEEE
Confidence 468999999999999998876666799999999999999999986541 47899998877643 2357999999
Q ss_pred cCCC-CCC-----------CCccccCC--------cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 185 DLAD-PVE-----------GGPCYQLY--------TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 185 D~~d-~~~-----------~~p~~~L~--------t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
|+|- +.. ..|...|+ .+.+++. +.+.|+|||.+++..+. +...++...|++
T Consensus 160 NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~-a~~~L~~gG~l~l~~~~-------~~~~~v~~~l~~ 230 (251)
T TIGR03704 160 NAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG-APDWLAPGGHLLVETSE-------RQAPLAVEAFAR 230 (251)
T ss_pred CCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH-HHHhcCCCCEEEEEECc-------chHHHHHHHHHH
Confidence 9973 210 01111111 2466666 67999999999987532 123456666655
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=99.19 E-value=8e-10 Score=100.70 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=80.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+..+||++|||+|.++..+++. +..+|+++|+|+.+++.+++++...+ .+++++.+|..+.+. .++||+|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~-----~~~~~~~~d~~~~~~--~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAG-----VDVDVRRGDWARAVE--FRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhC-----CeeEEEECchhhhcc--CCCeeEEEE
Confidence 3578999999999999988874 45699999999999999999886542 358899999877543 468999999
Q ss_pred cCCCCCC-C------Ccc--------ccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 DLADPVE-G------GPC--------YQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~-~------~p~--------~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|++-... . ++. .......+++. +.+.|++||++++-
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDA-APALLAPGGSLLLV 158 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHH-HHHhcCCCcEEEEE
Confidence 9752110 0 000 00012457777 78999999998864
No 56
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.18 E-value=1.3e-10 Score=107.82 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=82.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+||+||||+|.++..+++..+..+|++||+++.+++.|++.+ ++++++.+|+.++. ...+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------~~~~~~~~d~~~~~--~~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------PDCQFVEADIASWQ--PPQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------CCCeEEECchhccC--CCCCccEEE
Confidence 4568999999999999999998767789999999999999999863 46789999987653 346899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++..-.+. + -...+++. +.+.|+|||.++++.
T Consensus 99 ~~~~l~~~--~----d~~~~l~~-~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 99 ANASLQWL--P----DHLELFPR-LVSLLAPGGVLAVQM 130 (258)
T ss_pred EccChhhC--C----CHHHHHHH-HHHhcCCCcEEEEEC
Confidence 98764331 1 13578998 799999999999875
No 57
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.18 E-value=1.2e-10 Score=108.16 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=79.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+.+|||||||+|.+++.+++..+..+|+++|+++.+++.|++. +++++.+|+.++. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~--~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK--PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC--CCCCceEEE
Confidence 457899999999999999999876668999999999999999752 4778899987653 346899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+...-.+ .+ -...+++. ++++|+|||.++++.
T Consensus 95 ~~~~l~~--~~----d~~~~l~~-~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQW--VP----EHADLLVR-WVDELAPGSWIAVQV 126 (255)
T ss_pred Eehhhhh--CC----CHHHHHHH-HHHhCCCCcEEEEEc
Confidence 9876332 11 12578888 799999999998874
No 58
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.3e-10 Score=104.77 Aligned_cols=125 Identities=19% Similarity=0.310 Sum_probs=101.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
....+||+.|.|+|.++..+++. .+..+|+.+|++++..+.|++++..... .+++++..+|.++.... +.||+|
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l---~d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL---GDRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc---ccceEEEeccccccccc--cccCEE
Confidence 35689999999999999999963 4558999999999999999999976532 35599999999887643 489999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEEE
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVAY 251 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~~ 251 (339)
++|.++|| ++++. +++.|+|||.+++.+ |+ -+....+...|++. |-+...+
T Consensus 168 ~LDmp~PW-----------~~le~-~~~~Lkpgg~~~~y~--P~----veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 168 FLDLPDPW-----------NVLEH-VSDALKPGGVVVVYS--PT----VEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred EEcCCChH-----------HHHHH-HHHHhCCCcEEEEEc--CC----HHHHHHHHHHHHhcCccchhhh
Confidence 99999998 77899 899999999999874 32 34567778888877 5555444
No 59
>PLN02672 methionine S-methyltransferase
Probab=99.17 E-value=8.2e-10 Score=119.59 Aligned_cols=174 Identities=17% Similarity=0.118 Sum_probs=111.1
Q ss_pred eEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh
Q 019550 72 GKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151 (339)
Q Consensus 72 g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~ 151 (339)
|..|.++..+....++....-+.+...|-. ..++++|||||||+|.++..+++..+..+|++||+++++++.|+++...
T Consensus 86 ~l~~~V~p~VLIPRpeTE~lve~L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 86 KLTMMEIPSIFIPEDWSFTFYEGLNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCceeeCCCcccCchhHHHHHHHHHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 556666666666666533222322211100 0124689999999999999999877778999999999999999999876
Q ss_pred hccc------------cCCCCeEEEEccHHHHHHhcCCceeEEEecCCC-CC----C-------CC---------ccccC
Q 019550 152 NQEA------------FCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD-PV----E-------GG---------PCYQL 198 (339)
Q Consensus 152 ~~~~------------~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d-~~----~-------~~---------p~~~L 198 (339)
+... ....|++++.+|..+.+.....+||+||+++|- +. . .. |...|
T Consensus 165 n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL 244 (1082)
T PLN02672 165 NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCAL 244 (1082)
T ss_pred cCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccc
Confidence 4210 012479999999988774333479999999982 00 0 01 11223
Q ss_pred Cc-----------HHHHHHHHccccCCCcEEEEecCCCCccCchhhHH-HHHHHHHhHCCceEEEEE
Q 019550 199 YT-----------KSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFS-SIYNTIKQVFKHVVAYTA 253 (339)
Q Consensus 199 ~t-----------~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~-~i~~~l~~~F~~v~~~~~ 253 (339)
+. +...+. +.+.|+|||.++++.|. .+.+... .+++. .-|..+..|..
T Consensus 245 ~g~~~g~dGL~~yr~i~~~-a~~~L~pgG~l~lEiG~----~q~~~v~~~l~~~--~gf~~~~~~~~ 304 (1082)
T PLN02672 245 QGFVEDQFGLGLIARAVEE-GISVIKPMGIMIFNMGG----RPGQAVCERLFER--RGFRITKLWQT 304 (1082)
T ss_pred cCCCCCCcHHHHHHHHHHH-HHHhccCCCEEEEEECc----cHHHHHHHHHHHH--CCCCeeEEeee
Confidence 22 344444 46799999999999763 2333333 23332 23777777764
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.16 E-value=5.6e-10 Score=98.14 Aligned_cols=124 Identities=19% Similarity=0.196 Sum_probs=87.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++++||++|||+|.++..+++..+ +|+++|+++.+++.+++++..+ ..+++++.+|..+.. .++||+|+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN-----NVGLDVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc-----CCceEEEEccccccc---CCcccEEE
Confidence 3467899999999999999887532 8999999999999999998754 246889999976643 35899999
Q ss_pred ecCCCCCCCCc---------------cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH
Q 019550 184 GDLADPVEGGP---------------CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV 244 (339)
Q Consensus 184 ~D~~d~~~~~p---------------~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~ 244 (339)
++++-...... ........+++. +.+.|+|||.+++...+. .....+.+.+++.
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~Lk~gG~~~~~~~~~------~~~~~~~~~l~~~ 156 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDE-LPEILKEGGRVQLIQSSL------NGEPDTFDKLDER 156 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHh-HHHhhCCCCEEEEEEecc------CChHHHHHHHHhC
Confidence 99863110000 000113568888 799999999988754221 1134556666654
No 61
>PLN03075 nicotianamine synthase; Provisional
Probab=99.16 E-value=2.3e-10 Score=108.08 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=82.0
Q ss_pred CCCeEEEEecchhH-HHH-HHHhcCCCCEEEEEEcCHHHHHHHHHhhhh-hccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGS-AAR-EALKHKSLEKVVMCDIDQEVVDFCRRFLTV-NQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~-~l~~~~~~~~v~~VEid~~vi~~ar~~f~~-~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.|++|++||||.|. ++. .+.++.+..+++++|+|+++++.||+++.. ... .++++++.+|+.+... ..++||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCcEEEECchhhccc-ccCCcCE
Confidence 78999999999663 333 333567888999999999999999999853 221 5789999999987532 2368999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++++--.+... .-.+.++. +.+.|+|||++++.+
T Consensus 199 VF~~ALi~~dk~-----~k~~vL~~-l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 199 VFLAALVGMDKE-----EKVKVIEH-LGKHMAPGALLMLRS 233 (296)
T ss_pred EEEecccccccc-----cHHHHHHH-HHHhcCCCcEEEEec
Confidence 999953222101 13588999 799999999999875
No 62
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=1.9e-10 Score=102.65 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=91.6
Q ss_pred HHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH
Q 019550 91 YHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA 170 (339)
Q Consensus 91 Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~ 170 (339)
..+.++++|.. .+.+|.|||||.|.....+++..|.+.|+++|-|++|++.|++.+ |++++..+|.++
T Consensus 19 a~dLla~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------p~~~f~~aDl~~ 86 (257)
T COG4106 19 ARDLLARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------PDATFEEADLRT 86 (257)
T ss_pred HHHHHhhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------CCCceecccHhh
Confidence 34678888874 588999999999999999999999999999999999999998874 678999999988
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
| +.+...|+|+.++.-.+- | . -.+.|.. +-..|+|||+|.+|.
T Consensus 87 w--~p~~~~dllfaNAvlqWl--p-d---H~~ll~r-L~~~L~Pgg~LAVQm 129 (257)
T COG4106 87 W--KPEQPTDLLFANAVLQWL--P-D---HPELLPR-LVSQLAPGGVLAVQM 129 (257)
T ss_pred c--CCCCccchhhhhhhhhhc--c-c---cHHHHHH-HHHhhCCCceEEEEC
Confidence 7 345689999999975441 1 1 1256677 678999999999996
No 63
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.14 E-value=1e-10 Score=110.85 Aligned_cols=135 Identities=21% Similarity=0.278 Sum_probs=90.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+.++|||+|||+|.++..+++ .++.+|+++|+||..++.|+++...|+. ..++++.. ..+ ...++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~---~~~~~v~~--~~~---~~~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGV---EDRIEVSL--SED---LVEGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT----TTCEEESC--TSC---TCCS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCC---CeeEEEEE--ecc---cccccCCEEE
Confidence 4567999999999999998888 5888999999999999999999988754 34666531 111 1248899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCcee
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWG 263 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~ 263 (339)
.+..... -.+.... +.++|+|||.+++.. ... +....+.+.+++-|..+.. - ..+.|.
T Consensus 231 ANI~~~v---------L~~l~~~-~~~~l~~~G~lIlSG-----Il~-~~~~~v~~a~~~g~~~~~~-----~-~~~~W~ 288 (295)
T PF06325_consen 231 ANILADV---------LLELAPD-IASLLKPGGYLILSG-----ILE-EQEDEVIEAYKQGFELVEE-----R-EEGEWV 288 (295)
T ss_dssp EES-HHH---------HHHHHHH-CHHHEEEEEEEEEEE-----EEG-GGHHHHHHHHHTTEEEEEE-----E-EETTEE
T ss_pred ECCCHHH---------HHHHHHH-HHHhhCCCCEEEEcc-----ccH-HHHHHHHHHHHCCCEEEEE-----E-EECCEE
Confidence 9987321 1255666 678999999999864 222 2345666666542222111 1 135587
Q ss_pred EEEEec
Q 019550 264 WVMASD 269 (339)
Q Consensus 264 ~~~as~ 269 (339)
-+++.|
T Consensus 289 ~l~~~K 294 (295)
T PF06325_consen 289 ALVFKK 294 (295)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 776655
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.14 E-value=6.4e-11 Score=94.26 Aligned_cols=96 Identities=22% Similarity=0.411 Sum_probs=72.0
Q ss_pred EEEEecchhHHHHHHHhcC---CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe-
Q 019550 109 VFIMGGGEGSAAREALKHK---SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG- 184 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~- 184 (339)
||++|||+|...+.+++.. +..++++||+|+++++.+++++... ..+++++++|+.+ +....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-----~~~~~~~~~D~~~-l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-----GPKVRFVQADARD-LPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-----TTTSEEEESCTTC-HHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-----CCceEEEECCHhH-CcccCCCeeEEEEc
Confidence 7999999999999999864 2379999999999999999998653 3589999999977 4555679999999
Q ss_pred cC-CCCCCCCccccCCcHHHHHHHHccccCCCc
Q 019550 185 DL-ADPVEGGPCYQLYTKSFYERILKPKLNDNG 216 (339)
Q Consensus 185 D~-~d~~~~~p~~~L~t~ef~~~~~~~~L~~gG 216 (339)
.. .... .+ --...+++. +.++|+|||
T Consensus 75 ~~~~~~~--~~---~~~~~ll~~-~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHL--SP---EELEALLRR-IARLLRPGG 101 (101)
T ss_dssp TTGGGGS--SH---HHHHHHHHH-HHHTEEEEE
T ss_pred CCccCCC--CH---HHHHHHHHH-HHHHhCCCC
Confidence 33 2211 11 012578888 789999998
No 65
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.14 E-value=9.9e-11 Score=90.57 Aligned_cols=95 Identities=21% Similarity=0.244 Sum_probs=73.4
Q ss_pred EEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCC
Q 019550 110 FIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADP 189 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~ 189 (339)
|+||||+|..+..++++ +..+++++|+++++++.+++.... .+++++.+|..+. .-.+++||+|++...-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-------~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-------EGVSFRQGDAEDL-PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-------STEEEEESBTTSS-SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-------cCchheeehHHhC-cccccccccccccccee
Confidence 89999999999999997 678999999999999999998643 4566999997665 44468999999987532
Q ss_pred CCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 190 VEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 190 ~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
.. + --..++++ ++|.|||||.+++
T Consensus 72 ~~--~----~~~~~l~e-~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL--E----DPEAALRE-IYRVLKPGGRLVI 95 (95)
T ss_dssp GS--S----HHHHHHHH-HHHHEEEEEEEEE
T ss_pred ec--c----CHHHHHHH-HHHHcCcCeEEeC
Confidence 20 0 23578899 8999999999875
No 66
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.13 E-value=4.4e-10 Score=103.15 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+.+|||||||+|-.+..+++..+..+|+++|+++.|++.+++....... ..++++.+||.+ |.-.+.+||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----~~i~fv~~dAe~-LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----QNVEFVVGDAEN-LPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----cceEEEEechhh-CCCCCCccCEEE
Confidence 368899999999999999999988888999999999999999999764321 229999999754 565678999999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.-.-.+-. --...+++ +.|.|+|||++++-
T Consensus 125 ~~fglrnv~------d~~~aL~E-~~RVlKpgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVT------DIDKALKE-MYRVLKPGGRLLVL 155 (238)
T ss_pred eeehhhcCC------CHHHHHHH-HHHhhcCCeEEEEE
Confidence 876522210 12477888 79999999987764
No 67
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.13 E-value=3.5e-10 Score=103.04 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=82.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+.++|||||||+|..+..++++. +..+|+++|+++.+++.+++.+.... -++++++.+|+.+. ....++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~-~~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG----LHNVELVHGNAMEL-PFDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC----CCceEEEEechhcC-CCCCCCccEE
Confidence 346799999999999999888764 45799999999999999999875432 36799999998763 2235789999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+++..-.. .+ ...++++. +.+.|+|||.+++..
T Consensus 119 ~~~~~l~~--~~----~~~~~l~~-~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 119 TIGFGLRN--VP----DYMQVLRE-MYRVVKPGGKVVCLE 151 (231)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHHcCcCeEEEEEE
Confidence 98754222 11 12477888 789999999988653
No 68
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.4e-09 Score=95.91 Aligned_cols=149 Identities=21% Similarity=0.239 Sum_probs=103.1
Q ss_pred EEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHH
Q 019550 63 IALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEV 141 (339)
Q Consensus 63 I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~v 141 (339)
+.|+-....||.| +.+|..--++.| .-.|.+..+-.-..-...++||+-+|+|+++.|++. +++.+++.||.|.++
T Consensus 2 mRIi~G~~kgr~L~~p~~~~~RPT~d--rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlS-RGA~~~~~vE~~~~a 78 (187)
T COG0742 2 MRIIGGKYKGRKLKTPDGPGTRPTTD--RVREALFNILAPDEIEGARVLDLFAGSGALGLEALS-RGAARVVFVEKDRKA 78 (187)
T ss_pred eEEEeccccCCcccCCCCCCcCCCch--HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHh-CCCceEEEEecCHHH
Confidence 4555555456666 455532222222 223444432110013578999999999999999998 678999999999999
Q ss_pred HHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCc--eeEEEecCCCCCCCCccccCC--cHHHHHHHHccccCCCcE
Q 019550 142 VDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEK--FDVIFGDLADPVEGGPCYQLY--TKSFYERILKPKLNDNGI 217 (339)
Q Consensus 142 i~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~--yDvIi~D~~d~~~~~p~~~L~--t~ef~~~~~~~~L~~gGi 217 (339)
+.+.+++...... ..+++++..|+..+|+....+ ||+|++|||-.. + +. ........-...|+|+|+
T Consensus 79 ~~~l~~N~~~l~~---~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~--~----l~~~~~~~~~~~~~~~L~~~~~ 149 (187)
T COG0742 79 VKILKENLKALGL---EGEARVLRNDALRALKQLGTREPFDLVFLDPPYAK--G----LLDKELALLLLEENGWLKPGAL 149 (187)
T ss_pred HHHHHHHHHHhCC---ccceEEEeecHHHHHHhcCCCCcccEEEeCCCCcc--c----hhhHHHHHHHHHhcCCcCCCcE
Confidence 9999999875432 488999999999998887655 999999998553 2 22 122222101578999999
Q ss_pred EEEecC
Q 019550 218 FVTQAG 223 (339)
Q Consensus 218 lv~~~~ 223 (339)
+++...
T Consensus 150 iv~E~~ 155 (187)
T COG0742 150 IVVEHD 155 (187)
T ss_pred EEEEeC
Confidence 999864
No 69
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=1.3e-09 Score=109.29 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=93.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+.++|||+|||.|+.+..++++. +..+|+++|+++..++.+++++...+. .+++++.+|+.++.....++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~----~~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL----TNIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CeEEEEeCCcccccchhcccCCEE
Confidence 345789999999999999988764 457999999999999999999875432 359999999987643334689999
Q ss_pred EecCCCCCCC----Ccccc-------C-----CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCC
Q 019550 183 FGDLADPVEG----GPCYQ-------L-----YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFK 246 (339)
Q Consensus 183 i~D~~d~~~~----~p~~~-------L-----~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~ 246 (339)
++|++-...+ .|... + ...++++. +.+.|+|||.++..+.+. .. +....+...+.+..+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~LkpGG~lvystcs~---~~-~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILES-VAQYLKKGGILVYSTCTI---EK-EENEEVIEAFLEEHP 399 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEcCCC---Ch-hhhHHHHHHHHHhCC
Confidence 9998732100 01000 0 12467888 789999999998765432 22 233445554444444
Q ss_pred c
Q 019550 247 H 247 (339)
Q Consensus 247 ~ 247 (339)
.
T Consensus 400 ~ 400 (444)
T PRK14902 400 E 400 (444)
T ss_pred C
Confidence 3
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.13 E-value=2.5e-10 Score=103.39 Aligned_cols=102 Identities=24% Similarity=0.257 Sum_probs=79.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+||+||||+|..+..+++..+ ..+|++||+++++++.|++++.... -++++++.+|+.+.+.. ..+||+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g----~~~v~~~~~d~~~~~~~-~~~fD~I 150 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG----LDNVIVIVGDGTQGWEP-LAPYDRI 150 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCeEEEECCcccCCcc-cCCCCEE
Confidence 4567999999999999998887543 3579999999999999999987543 35799999998765432 3689999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+++...+. ..+. +.+.|+|||++++..+
T Consensus 151 i~~~~~~~------------~~~~-~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 151 YVTAAGPK------------IPEA-LIDQLKEGGILVMPVG 178 (215)
T ss_pred EEcCCccc------------ccHH-HHHhcCcCcEEEEEEc
Confidence 99875332 1134 4678999999998653
No 71
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=3e-10 Score=102.30 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=77.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+..+||+||||+|..+..+++..+ ..+|+++|+++++++.|++++..... ..+++++.+|+.+.+.. ..+||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~---~~~v~~~~~d~~~~~~~-~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY---WGVVEVYHGDGKRGLEK-HAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEECCcccCCcc-CCCccEEE
Confidence 457899999999999988876543 46899999999999999998865431 34799999999765432 46899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++..-.. +.+. +.+.|+|||+|++..
T Consensus 148 ~~~~~~~------------~~~~-l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 148 VTAAAST------------IPSA-LVRQLKDGGVLVIPV 173 (205)
T ss_pred EccCcch------------hhHH-HHHhcCcCcEEEEEE
Confidence 9976321 1234 567899999998864
No 72
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=5.4e-10 Score=105.40 Aligned_cols=137 Identities=23% Similarity=0.236 Sum_probs=93.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++++|||+|||+|.++..+++ .+..+|.++|+||..++.|+++...|+. .+.++.-..+..... ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v---~~~~~~~~~~~~~~~--~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGV---ELLVQAKGFLLLEVP--ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCC---chhhhcccccchhhc--ccCcccEEE
Confidence 3688999999999999998888 6889999999999999999999988754 222223233322222 136899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh-HCCceEEEEEeecccCCce
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ-VFKHVVAYTAHVPSFADTW 262 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~-~F~~v~~~~~~iP~~~~~~ 262 (339)
.+.-.. + -..+... +++.|+|||.+++.. ... +....+...+.+ -|..+.... .+.|
T Consensus 235 ANILA~----v-----l~~La~~-~~~~lkpgg~lIlSG-----Il~-~q~~~V~~a~~~~gf~v~~~~~------~~eW 292 (300)
T COG2264 235 ANILAE----V-----LVELAPD-IKRLLKPGGRLILSG-----ILE-DQAESVAEAYEQAGFEVVEVLE------REEW 292 (300)
T ss_pred ehhhHH----H-----HHHHHHH-HHHHcCCCceEEEEe-----ehH-hHHHHHHHHHHhCCCeEeEEEe------cCCE
Confidence 998521 2 1266677 788999999999874 222 234566677744 455444321 2457
Q ss_pred eEEEEe
Q 019550 263 GWVMAS 268 (339)
Q Consensus 263 ~~~~as 268 (339)
.-+.+.
T Consensus 293 ~~i~~k 298 (300)
T COG2264 293 VAIVGK 298 (300)
T ss_pred EEEEEE
Confidence 655443
No 73
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.12 E-value=2.4e-10 Score=101.25 Aligned_cols=109 Identities=26% Similarity=0.385 Sum_probs=80.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDv 181 (339)
...+|||+.+|+|.++.|++. +++.+|+.||.|++.++..++++..... ..+++++.+|+..++... .++||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALS-RGA~~v~fVE~~~~a~~~i~~N~~~l~~---~~~~~v~~~d~~~~l~~~~~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALS-RGAKSVVFVEKNRKAIKIIKKNLEKLGL---EDKIRVIKGDAFKFLLKLAKKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHH-TT-SEEEEEES-HHHHHHHHHHHHHHT----GGGEEEEESSHHHHHHHHHHCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHhCC---CcceeeeccCHHHHHHhhcccCCCceE
Confidence 578999999999999999998 6889999999999999999999875432 347999999999988654 689999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHH-ccccCCCcEEEEecC
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERIL-KPKLNDNGIFVTQAG 223 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~-~~~L~~gGilv~~~~ 223 (339)
|++|||-.. . ++-.+.++.+. ...|+++|+++++..
T Consensus 118 IflDPPY~~--~----~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 118 IFLDPPYAK--G----LYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp EEE--STTS--C----HHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEECCCccc--c----hHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 999998443 1 11234555521 379999999999863
No 74
>PLN02244 tocopherol O-methyltransferase
Probab=99.11 E-value=3.3e-10 Score=109.77 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=82.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+|||||||+|.++..+++.. ..+|++||+++.+++.+++....... .++++++.+|+.+. .-..++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~---~~~v~~~~~D~~~~-~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL---SDKVSFQVADALNQ-PFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEEcCcccC-CCCCCCccEEE
Confidence 356789999999999999999865 47999999999999999988654321 46799999998653 22357899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-.. -+ -...++++ +.+.|+|||.+++.
T Consensus 192 s~~~~~h--~~----d~~~~l~e-~~rvLkpGG~lvi~ 222 (340)
T PLN02244 192 SMESGEH--MP----DKRKFVQE-LARVAAPGGRIIIV 222 (340)
T ss_pred ECCchhc--cC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 8554221 11 13578999 79999999998875
No 75
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.10 E-value=2.6e-10 Score=103.51 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=80.5
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecC
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDL 186 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 186 (339)
++||+||||.|..+..+++..+..+++++|+++++++.+++++...+. .++++++.+|..+. ...++||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl---~~~i~~~~~d~~~~--~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL---QGRIRIFYRDSAKD--PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC---CcceEEEecccccC--CCCCCCCEeehHH
Confidence 479999999999999999877667999999999999999998765332 46899999997443 1246899999754
Q ss_pred CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 187 ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 187 ~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.-.. .+ -...+++. +++.|+|||.+++..
T Consensus 76 ~l~~--~~----~~~~~l~~-~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHH--IK----DKMDLFSN-ISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHh--CC----CHHHHHHH-HHHHcCCCCEEEEEE
Confidence 3211 01 13588999 899999999988753
No 76
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.09 E-value=1.8e-10 Score=105.92 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=72.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.++.+|||+|||+|.++..++++. +..+|+++|+++.|++.|++...... ..+++++.+|+.+ |.-.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~----~~~i~~v~~da~~-lp~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG----LQNIEFVQGDAED-LPFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------SEEEEE-BTTB---S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC----CCCeeEEEcCHHH-hcCCCCceeEE
Confidence 456799999999999999998864 45799999999999999999876542 2489999999866 44456899999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++--.-.. -+ -....+++ +.|.|||||.+++-
T Consensus 121 ~~~fglrn--~~----d~~~~l~E-~~RVLkPGG~l~il 152 (233)
T PF01209_consen 121 TCSFGLRN--FP----DRERALRE-MYRVLKPGGRLVIL 152 (233)
T ss_dssp EEES-GGG---S----SHHHHHHH-HHHHEEEEEEEEEE
T ss_pred EHHhhHHh--hC----CHHHHHHH-HHHHcCCCeEEEEe
Confidence 98663211 01 12468888 79999999988753
No 77
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=1e-09 Score=97.73 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=83.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDv 181 (339)
..++|||++||+|.++.++++. +..+|++||+|+.+++.+++++..++. ..+++++.+|+.+++... ...||+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~---~~~~~~~~~D~~~~l~~~~~~~~~~dv 124 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKS---GEQAEVVRNSALRALKFLAKKPTFDNV 124 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---cccEEEEehhHHHHHHHhhccCCCceE
Confidence 4678999999999999999984 667999999999999999999877642 357999999999988643 234899
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHH-ccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERIL-KPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~-~~~L~~gGilv~~~ 222 (339)
|+.|||-.. . +..+.++.+. ...|+++|++++..
T Consensus 125 v~~DPPy~~--~-----~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 125 IYLDPPFFN--G-----ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEECcCCCC--C-----cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999998532 1 1234444411 35799999999874
No 78
>PRK04266 fibrillarin; Provisional
Probab=99.09 E-value=3.7e-09 Score=96.78 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=88.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH--HhcCCceeE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL--EKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~yDv 181 (339)
.+..+||++|||+|.++..+++..+..+|+++|+++++++.+++.... .+++.++.+|+.+.. ....++||+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~------~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE------RKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh------cCCcEEEECCCCCcchhhhccccCCE
Confidence 345799999999999999998865556899999999999877665432 257889999986421 112356999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC-CCCcc--CchhhHHHHHHHHHhH-CCce
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG-PAGIF--THKEVFSSIYNTIKQV-FKHV 248 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~-~~~~~--~~~~~~~~i~~~l~~~-F~~v 248 (339)
|++|..+|+. ...+++. +++.|+|||.+++... .+..+ ...+.+....+.++++ |..+
T Consensus 145 i~~d~~~p~~--------~~~~L~~-~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 145 IYQDVAQPNQ--------AEIAIDN-AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred EEECCCChhH--------HHHHHHH-HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 9999876531 1245777 7899999999887411 00001 1123344556777766 4444
No 79
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=6.1e-10 Score=104.02 Aligned_cols=109 Identities=16% Similarity=0.053 Sum_probs=80.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+|||||||+|.++..+++.. +..+|++||++++|++.|++....... ...++++++.+|+.+. .-.+++||+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-~~~~~i~~~~~d~~~l-p~~~~sfD~V 149 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-SCYKNIEWIEGDATDL-PFDDCYFDAI 149 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-ccCCCeEEEEcccccC-CCCCCCEeEE
Confidence 346789999999999999888753 446999999999999999987542110 0136899999997652 3334689999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++...-.. .+ -...++++ +.+.|+|||.+++-
T Consensus 150 ~~~~~l~~--~~----d~~~~l~e-i~rvLkpGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRN--VV----DRLKAMQE-MYRVLKPGSRVSIL 181 (261)
T ss_pred EEeccccc--CC----CHHHHHHH-HHHHcCcCcEEEEE
Confidence 98654221 11 13578999 89999999988764
No 80
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.08 E-value=5.1e-10 Score=100.19 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=77.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++.+||++|||.|..+..+++. ..+|+++|+++.+++.+++...... -.+++++..|..++ ...++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~----~~~v~~~~~d~~~~--~~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN----LDNLHTAVVDLNNL--TFDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC----CCcceEEecChhhC--CcCCCcCEEEE
Confidence 4689999999999999999884 3689999999999999999876542 24588899997654 22467999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
...-... .+ -....+++. +++.|+|||.+++
T Consensus 102 ~~~~~~~-~~---~~~~~~l~~-i~~~LkpgG~~~~ 132 (197)
T PRK11207 102 TVVLMFL-EA---KTIPGLIAN-MQRCTKPGGYNLI 132 (197)
T ss_pred ecchhhC-CH---HHHHHHHHH-HHHHcCCCcEEEE
Confidence 7542210 01 013578898 7999999998543
No 81
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.08 E-value=7.8e-10 Score=101.67 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=81.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhc--CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH--KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
++..+|||||||+|..+..++++ .+..++++||+++.+++.|++++.... ...+++++.+|+.++- .+.+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~---~~~~v~~~~~d~~~~~---~~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH---SEIPVEILCNDIRHVE---IKNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC---CCCCeEEEECChhhCC---CCCCCE
Confidence 35578999999999999988875 356899999999999999999876432 1357999999986542 246898
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++...-+. .+.. -...+++. +++.|+|||.+++..
T Consensus 126 v~~~~~l~~--~~~~--~~~~~l~~-i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 126 VILNFTLQF--LPPE--DRIALLTK-IYEGLNPNGVLVLSE 161 (239)
T ss_pred Eeeecchhh--CCHH--HHHHHHHH-HHHhcCCCeEEEEee
Confidence 887654222 1100 12478999 899999999998763
No 82
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.08 E-value=4.6e-10 Score=102.04 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...+|||+|||+|.++..+++. + .+|+++|++++.|+.|+.+-.... -.+........+.. ...++||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-G-a~VtgiD~se~~I~~Ak~ha~e~g-----v~i~y~~~~~edl~-~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-G-ASVTGIDASEKPIEVAKLHALESG-----VNIDYRQATVEDLA-SAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-C-CeeEEecCChHHHHHHHHhhhhcc-----ccccchhhhHHHHH-hcCCCccEEEE
Confidence 4679999999999999999983 4 899999999999999999865542 22445555554433 33489999998
Q ss_pred cCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
--- .+. ..| ..|.+. |.+++||||++++.+
T Consensus 131 mEVlEHv-~dp------~~~~~~-c~~lvkP~G~lf~ST 161 (243)
T COG2227 131 MEVLEHV-PDP------ESFLRA-CAKLVKPGGILFLST 161 (243)
T ss_pred hhHHHcc-CCH------HHHHHH-HHHHcCCCcEEEEec
Confidence 542 221 012 368898 799999999998865
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=6.4e-10 Score=100.76 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=78.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+||+||||+|.++..+++..+ ..+|++||+++++++.+++++.... -.+++++.+|+..... ....||+|
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g----~~~v~~~~gd~~~~~~-~~~~fD~I 149 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG----YDNVEVIVGDGTLGYE-ENAPYDRI 149 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCeEEEECCcccCCC-cCCCcCEE
Confidence 3567999999999999988877543 3699999999999999999987542 3579999999865432 23689999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+++..-+. ..+. +.+.|+|||.+++..+
T Consensus 150 ~~~~~~~~------------~~~~-l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 150 YVTAAGPD------------IPKP-LIEQLKDGGIMVIPVG 177 (212)
T ss_pred EECCCccc------------chHH-HHHhhCCCcEEEEEEc
Confidence 99865321 1234 4568999999988643
No 84
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.07 E-value=1.2e-09 Score=97.79 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=97.5
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCceeEEEec
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFDVIFGD 185 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yDvIi~D 185 (339)
-+|+||||.|....++++..|...+.+||+....+..+.+.....+ -+++.++.+|+..++... +++.|-|.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~----l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG----LKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT----TSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc----ccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 7999999999999999988889999999999999998888766542 589999999999988653 4789999999
Q ss_pred CCCCCCCC--ccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH
Q 019550 186 LADPVEGG--PCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV 244 (339)
Q Consensus 186 ~~d~~~~~--p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~ 244 (339)
-|||+-.. .-.+|.+.+|++. ++++|+|||.+.+.+. ....+..+.+.+.+.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~-~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLEL-LARVLKPGGELYFATD------VEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHH-HHHHEEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHH-HHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhc
Confidence 99998321 1267999999998 8999999999988753 345666677777765
No 85
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.07 E-value=6.7e-10 Score=106.68 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=79.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
..+|||||||+|.++..+++ . ..+|++||+++++++.|+++...... ..+++++++|+.+.- ...++||+|++-
T Consensus 132 g~~ILDIGCG~G~~s~~La~-~-g~~V~GID~s~~~i~~Ar~~~~~~~~---~~~i~~~~~dae~l~-~~~~~FD~Vi~~ 205 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR-M-GATVTGVDAVDKNVKIARLHADMDPV---TSTIEYLCTTAEKLA-DEGRKFDAVLSL 205 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHhcCc---ccceeEEecCHHHhh-hccCCCCEEEEh
Confidence 46899999999999988876 3 46899999999999999988654311 358999999986643 335789999985
Q ss_pred CC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 186 LA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 186 ~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.. ... .. ..+|++. ++++|+|||.+++..
T Consensus 206 ~vLeHv-~d------~~~~L~~-l~r~LkPGG~liist 235 (322)
T PLN02396 206 EVIEHV-AN------PAEFCKS-LSALTIPNGATVLST 235 (322)
T ss_pred hHHHhc-CC------HHHHHHH-HHHHcCCCcEEEEEE
Confidence 53 111 01 2488998 899999999999875
No 86
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.06 E-value=1.8e-09 Score=101.75 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=82.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cCCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~yDvI 182 (339)
..++||++-|=+|+++..+++ .++.+|+.||++..+++.+++++..++. +..+++++.+|++++++. ..++||+|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~--~~~~~~~~~~Dvf~~l~~~~~~~~fD~I 199 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGL--DLDRHRFIQGDVFKFLKRLKKGGRFDLI 199 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT---CCTCEEEEES-HHHHHHHHHHTT-EEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC--CccceEEEecCHHHHHHHHhcCCCCCEE
Confidence 468999999999999998887 5778999999999999999999998753 457899999999999875 35799999
Q ss_pred EecCCCCCCCCccccCCcH---HHHHHHHccccCCCcEEEEecCCC
Q 019550 183 FGDLADPVEGGPCYQLYTK---SFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~---ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
|+|||.=.. +. ..+ .+ +.++. +.+.|+|||+|++.+.++
T Consensus 200 IlDPPsF~k-~~-~~~-~~~y~~L~~~-a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 200 ILDPPSFAK-SK-FDL-ERDYKKLLRR-AMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EE--SSEES-ST-CEH-HHHHHHHHHH-HHHTEEEEEEEEEEE--T
T ss_pred EECCCCCCC-CH-HHH-HHHHHHHHHH-HHHhcCCCCEEEEEcCCc
Confidence 999984210 11 111 22 34455 468999999988776665
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=6.1e-09 Score=103.96 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=84.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvI 182 (339)
.+..+|||+|||+|+.+.++++..+..+|+++|+++.+++.+++++...+ -+++++.+|+.+.... ..++||.|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-----~~~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-----LKATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-----CCeEEEEcCcccchhhcccCCCCEE
Confidence 34678999999999999999886554789999999999999999987642 2478999998764321 24679999
Q ss_pred EecCCCCCC----CCcccc-CC-----------cHHHHHHHHccccCCCcEEEEecCC
Q 019550 183 FGDLADPVE----GGPCYQ-LY-----------TKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 183 i~D~~d~~~----~~p~~~-L~-----------t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
++|++-... ..|... .. ..++++. +.+.|+|||.++..+.+
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~-a~~~LkpGG~lvystcs 374 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA-LWPLLKPGGTLLYATCS 374 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC
Confidence 999973211 011000 01 1357887 78999999999977654
No 88
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.3e-09 Score=97.61 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=80.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||+|+|..+.-+++.- .+|+.||++++..+.||+++...+ -.+|.++++||..-+.. ...||.|+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg----~~nV~v~~gDG~~G~~~-~aPyD~I~ 143 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG----YENVTVRHGDGSKGWPE-EAPYDRII 143 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC----CCceEEEECCcccCCCC-CCCcCEEE
Confidence 456899999999999999888753 499999999999999999987653 35699999999876543 37899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+.+.-+. -| + . +.+.|++||+|++-.+
T Consensus 144 Vtaaa~~--vP-------~---~-Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 144 VTAAAPE--VP-------E---A-LLDQLKPGGRLVIPVG 170 (209)
T ss_pred EeeccCC--CC-------H---H-HHHhcccCCEEEEEEc
Confidence 9987554 33 1 2 3457999999998766
No 89
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.04 E-value=2.7e-09 Score=94.55 Aligned_cols=127 Identities=20% Similarity=0.284 Sum_probs=85.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH-----HH--hc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE-----LE--KR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~-----l~--~~ 175 (339)
.+.++||+||||+|+++..+++.. +..+|+++|+++.. . .++++++.+|..+. +. ..
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~-------~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P-------IENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c-------CCCceEEEeeCCChhHHHHHHHHhC
Confidence 456789999999999998887654 45689999999854 1 24577888886542 11 12
Q ss_pred CCceeEEEecCCCCCCCCcc-ccCC----cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEE
Q 019550 176 NEKFDVIFGDLADPVEGGPC-YQLY----TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVA 250 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~-~~L~----t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~ 250 (339)
.++||+|++|...+....+. .++. ...+++. +.+.|+|||.+++... ....+..++..++..|..+..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~lvi~~~------~~~~~~~~l~~l~~~~~~~~~ 168 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDI-AKEVLKPKGNFVVKVF------QGEEIDEYLNELRKLFEKVKV 168 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHH-HHHHccCCCEEEEEEc------cCccHHHHHHHHHhhhceEEE
Confidence 45799999987532110110 0110 1467888 7899999999998642 223455677888877876665
Q ss_pred EE
Q 019550 251 YT 252 (339)
Q Consensus 251 ~~ 252 (339)
+.
T Consensus 169 ~~ 170 (188)
T TIGR00438 169 TK 170 (188)
T ss_pred eC
Confidence 43
No 90
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=5.4e-09 Score=104.38 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=96.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+|||+|||.|+.+..++... +..+|+++|+++..++.+++++...+ -.+++++.+|+..+-....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g----~~~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK----LSSIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCeEEEEECchhhhhhhhhccCCEE
Confidence 345789999999999998888754 34689999999999999999987543 2468999999987543335679999
Q ss_pred EecCCCCCCCCcc----cc-----------C--CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHC
Q 019550 183 FGDLADPVEGGPC----YQ-----------L--YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVF 245 (339)
Q Consensus 183 i~D~~d~~~~~p~----~~-----------L--~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F 245 (339)
++|++-... |.. .. + ...+.+.. +.+.|+|||+++..+++. ..+....+++.+-+.+
T Consensus 312 l~DaPCsg~-G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~LkpGG~LvYsTCs~----~~eEne~vv~~fl~~~ 385 (431)
T PRK14903 312 LVDAPCTSL-GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQ-AWKLLEKGGILLYSTCTV----TKEENTEVVKRFVYEQ 385 (431)
T ss_pred EECCCCCCC-ccccCChHHHHhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEECCC----ChhhCHHHHHHHHHhC
Confidence 999974211 110 00 0 12466777 689999999998776543 2334455555555556
Q ss_pred CceE
Q 019550 246 KHVV 249 (339)
Q Consensus 246 ~~v~ 249 (339)
|...
T Consensus 386 ~~~~ 389 (431)
T PRK14903 386 KDAE 389 (431)
T ss_pred CCcE
Confidence 6543
No 91
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.04 E-value=6.7e-09 Score=97.19 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+..+|||+|||.|+.+..+++..+ ...|+++|+++..++.+++++...+ -.+++++..|+..+.. ..+.||+|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g----~~~v~~~~~D~~~~~~-~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG----VLNVAVTNFDGRVFGA-AVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC----CCcEEEecCCHHHhhh-hccCCCEEE
Confidence 457899999999999988877543 3589999999999999999987653 2469999999987533 335699999
Q ss_pred ecCCCCCC----CCccc-------cC-----CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 184 GDLADPVE----GGPCY-------QL-----YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 184 ~D~~d~~~----~~p~~-------~L-----~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
+|++-... ..|.. .+ ...+.++. +.+.|+|||+|+..+.+. .......+.+.+.+.++.
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvYstcs~----~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDS-AFDALKPGGVLVYSTCSL----EPEENEAVVDYLLEKRPD 220 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCCC----ChHHHHHHHHHHHHhCCC
Confidence 99973211 01100 00 12457777 788999999998765432 334456677777777765
Q ss_pred eE
Q 019550 248 VV 249 (339)
Q Consensus 248 v~ 249 (339)
..
T Consensus 221 ~~ 222 (264)
T TIGR00446 221 VV 222 (264)
T ss_pred cE
Confidence 43
No 92
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.02 E-value=1.7e-09 Score=98.20 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=81.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+++||+||||+|.++..+++..+..+++++|+++.+++.+++.+. ++++++.+|..+.. ...++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~-~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLP-LEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCC-CCCCceeEEE
Confidence 34679999999999999999987777789999999999999988753 46888999976532 2347899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++..-.... ....+++. +++.|+|||.+++..
T Consensus 104 ~~~~l~~~~------~~~~~l~~-~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCD------DLSQALSE-LARVLKPGGLLAFST 135 (240)
T ss_pred Ehhhhhhcc------CHHHHHHH-HHHHcCCCcEEEEEe
Confidence 987533211 13478898 799999999998764
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.02 E-value=3.5e-09 Score=98.87 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=80.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...+||++|||+|.++..++++.+..+|++||+++.+++.+++.+ ++++++.+|++++.. .++||+|++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------~~v~~v~~D~~e~~~--~~kFDlIIs 132 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------PEAEWITSDVFEFES--NEKFDVVIS 132 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------cCCEEEECchhhhcc--cCCCcEEEE
Confidence 357899999999999988887655579999999999999999863 468899999988753 468999999
Q ss_pred cCCCCCC---CCccccCC-----------cHHHHHHHHccccCCCcEEEE-ecCCC
Q 019550 185 DLADPVE---GGPCYQLY-----------TKSFYERILKPKLNDNGIFVT-QAGPA 225 (339)
Q Consensus 185 D~~d~~~---~~p~~~L~-----------t~ef~~~~~~~~L~~gGilv~-~~~~~ 225 (339)
|++-... ......-+ -..|+.. +...|+|+|.+.+ ..+.|
T Consensus 133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~-v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFAD-VGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred cCCccccCchhhhhhhhhccCccccccccHHHHHhh-hHheecCCceEEEEEeccc
Confidence 9973210 00000011 2577787 7889999996543 33444
No 94
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.02 E-value=1e-09 Score=103.15 Aligned_cols=105 Identities=20% Similarity=0.254 Sum_probs=76.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+|||||||.|+++..+++.++ .+|++|.++++-.+.+++.....+. ..++++..+|.+++ +.+||.|+
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl---~~~v~v~~~D~~~~----~~~fD~Iv 132 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGL---EDRVEVRLQDYRDL----PGKFDRIV 132 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS---SSTEEEEES-GGG-------S-SEEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEEeecccc----CCCCCEEE
Confidence 4567999999999999999999774 7899999999999999999875432 47899999997654 34899988
Q ss_pred ecC-CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDL-ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~-~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+=- +... ++ -.-..||+. +++.|+|||+++++.
T Consensus 133 Si~~~Ehv--g~---~~~~~~f~~-~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 133 SIEMFEHV--GR---KNYPAFFRK-ISRLLKPGGRLVLQT 166 (273)
T ss_dssp EESEGGGT--CG---GGHHHHHHH-HHHHSETTEEEEEEE
T ss_pred EEechhhc--Ch---hHHHHHHHH-HHHhcCCCcEEEEEe
Confidence 754 3222 21 123689999 899999999999885
No 95
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=5.7e-09 Score=104.68 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+.++|||+|||.|+.+..++++. +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++. ..++||+|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g----~~~v~~~~~Da~~~~--~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG----ITIIETIEGDARSFS--PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC----CCeEEEEeCcccccc--cCCCCCEEE
Confidence 45789999999999888777643 34689999999999999999987543 246999999998764 246799999
Q ss_pred ecCCCCCCC----Ccc--ccC----------CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 184 GDLADPVEG----GPC--YQL----------YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 184 ~D~~d~~~~----~p~--~~L----------~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
+|++-...+ .|. ..+ ...++++. +.+.|+|||+++..+.+. ..+....+.+.+-+.++.
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~-a~~~lkpgG~lvystcs~----~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDH-AASLLKPGGVLVYATCSI----EPEENELQIEAFLQRHPE 398 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhHHHHHHHHHHhCCC
Confidence 998732110 010 011 12357888 789999999999887553 233345555555555554
Q ss_pred e
Q 019550 248 V 248 (339)
Q Consensus 248 v 248 (339)
.
T Consensus 399 ~ 399 (445)
T PRK14904 399 F 399 (445)
T ss_pred C
Confidence 3
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=99.01 E-value=1e-08 Score=89.91 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=81.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+.++||++|||+|.++..+++. ..+++++|+++++++.+++++..... .+.+++++.+|..+.+. ..+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~~~~d~~~~~~--~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI--RNNGVEVIRSDLFEPFR--GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC--CCcceEEEecccccccc--ccCceEEE
Confidence 45678999999999999999985 47999999999999999998865432 12238899999766442 34799999
Q ss_pred ecCCCCCCCCcc----------------ccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVEGGPC----------------YQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~~~p~----------------~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
++++-... ++. ..-....+++. +.+.|+|||.+++...
T Consensus 96 ~n~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 96 FNPPYLPT-EEEEEWDDWLNYALSGGKDGREVIDRFLDE-VGRYLKPGGRILLLQS 149 (188)
T ss_pred ECCCcCCC-CchhhhhhhhhhhhccCcChHHHHHHHHHH-HHHhcCCCeEEEEEEc
Confidence 98763110 000 00112467888 7899999998877643
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.00 E-value=2.5e-09 Score=98.91 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=75.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++.+|||||||+|.++..+.+. ..+++++|+++.+++.|++... ...++.+|+.+ +.-..++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---------~~~~~~~d~~~-~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---------ADHYLAGDIES-LPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---------CCCEEEcCccc-CcCCCCcEEEEEE
Confidence 4678999999999999888763 3789999999999999998742 23577888754 2233468999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+..-.+. + ...+++.. +.+.|+|||.+++..
T Consensus 110 ~~~l~~~--~----d~~~~l~~-~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWC--G----NLSTALRE-LYRVVRPGGVVAFTT 140 (251)
T ss_pred Cchhhhc--C----CHHHHHHH-HHHHcCCCeEEEEEe
Confidence 8763331 1 12478888 799999999998864
No 98
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.00 E-value=7.4e-11 Score=93.29 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=60.3
Q ss_pred EEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEecCCC
Q 019550 110 FIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDLAD 188 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~d 188 (339)
|+||||+|.++..++++.+..+++++|+++.+++.+++.+..... ....++++...|. .... .++||+|++...-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDL---FDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS------CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCCh---hhcccccccceehhhhhH
Confidence 799999999999999987889999999999999988888764321 0012333333332 2222 2589999987653
Q ss_pred CCCCCccccCCcHHHHHHHHccccCCCcEE
Q 019550 189 PVEGGPCYQLYTKSFYERILKPKLNDNGIF 218 (339)
Q Consensus 189 ~~~~~p~~~L~t~ef~~~~~~~~L~~gGil 218 (339)
... + ...++++. +++.|+|||+|
T Consensus 77 ~~l--~----~~~~~l~~-~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL--E----DIEAVLRN-IYRLLKPGGIL 99 (99)
T ss_dssp S----S-----HHHHHHH-HTTT-TSS-EE
T ss_pred hhh--h----hHHHHHHH-HHHHcCCCCCC
Confidence 321 1 24589999 89999999986
No 99
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=2.2e-09 Score=100.48 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=84.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+|||||||-|++++++++++ ..+|++|.+|++..+.+++.+...+. ..+++++..|-+++ .++||-|+
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl---~~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGL---EDNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCC---CcccEEEecccccc----ccccceee
Confidence 567899999999999999999988 57899999999999999998765432 35899999996654 45699988
Q ss_pred ecC-CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDL-ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~-~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+-. +... ++ -.-..||+. +++.|+|||.+++++
T Consensus 143 SvgmfEhv--g~---~~~~~ff~~-~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 SVGMFEHV--GK---ENYDDFFKK-VYALLKPGGRMLLHS 176 (283)
T ss_pred ehhhHHHh--Cc---ccHHHHHHH-HHhhcCCCceEEEEE
Confidence 744 4443 22 123589999 899999999999886
No 100
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=1.1e-08 Score=102.39 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=94.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH---hcCCce
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE---KRNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~---~~~~~y 179 (339)
.+..+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++...+ -.+++++.+|+.+... ...++|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g----~~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG----LKSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC----CCeEEEEeCChhhcccccccccccC
Confidence 345789999999999999888753 34689999999999999999987553 2469999999987642 123679
Q ss_pred eEEEecCCCCCCC----Ccc--ccC----------CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 180 DVIFGDLADPVEG----GPC--YQL----------YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 180 DvIi~D~~d~~~~----~p~--~~L----------~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
|.|++|++-...+ .|. ... ...+.++. +.+.|+|||.++..+.+ .. .+....+...+.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~lkpgG~lvystcs---i~-~~Ene~~v~~~l~ 401 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLES-LAPLLKPGGTLVYATCT---LH-PAENEAQIEQFLA 401 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEeCC---CC-hhhHHHHHHHHHH
Confidence 9999999732110 110 000 02577888 78999999999876543 22 2333445555545
Q ss_pred HCCceE
Q 019550 244 VFKHVV 249 (339)
Q Consensus 244 ~F~~v~ 249 (339)
.+|...
T Consensus 402 ~~~~~~ 407 (434)
T PRK14901 402 RHPDWK 407 (434)
T ss_pred hCCCcE
Confidence 556543
No 101
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.99 E-value=2.3e-09 Score=95.86 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=74.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++.+||++|||+|..+..+++. ..+|+++|+++.+++.+++.....+ -++++...|...+ ..+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~-----~~v~~~~~d~~~~--~~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN-----LPLRTDAYDINAA--ALNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC-----CCceeEeccchhc--cccCCCCEEEE
Confidence 4689999999999999999884 3689999999999999998765432 2367777776432 12467999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
...-.. .+. -....+++. +++.|+|||.+++
T Consensus 101 ~~~~~~--~~~--~~~~~~l~~-~~~~LkpgG~lli 131 (195)
T TIGR00477 101 TVVFMF--LQA--GRVPEIIAN-MQAHTRPGGYNLI 131 (195)
T ss_pred eccccc--CCH--HHHHHHHHH-HHHHhCCCcEEEE
Confidence 754221 000 013478888 7999999998443
No 102
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.99 E-value=1.9e-09 Score=100.86 Aligned_cols=105 Identities=19% Similarity=0.260 Sum_probs=79.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.. .++++++.+|+.+. .-..++||+|+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~i~~~~~D~~~~-~~~~~~FD~V~ 122 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------KNKIEFEANDILKK-DFPENTFDMIY 122 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------CCceEEEECCcccC-CCCCCCeEEEE
Confidence 456799999999999999888755 46899999999999999987643 36799999997532 12246899999
Q ss_pred ec-CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GD-LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D-~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+. ..-.. ... -...+++. +++.|+|||.+++..
T Consensus 123 s~~~l~h~--~~~---d~~~~l~~-i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHL--SYA---DKKKLFEK-CYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhC--CHH---HHHHHHHH-HHHHcCCCcEEEEEE
Confidence 84 32111 000 13478898 799999999998763
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=3.6e-09 Score=95.69 Aligned_cols=127 Identities=22% Similarity=0.363 Sum_probs=88.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HH-----hc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LE-----KR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~-----~~ 175 (339)
.+..+|||||||+|..+..+++..+ ..+|++||+++. . ..++++++++|+.+. +. ..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~----~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------D----PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------c----CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 4467899999999999998888643 468999999981 1 125689999998764 11 12
Q ss_pred CCceeEEEecCCCCCCCCccccC-----CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEE
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQL-----YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVA 250 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L-----~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~ 250 (339)
.++||+|++|........+.... ...+.++. +.+.|+|||.+++-. + ..+.+.+++..++..|..+..
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~-~~~~LkpGG~~vi~~-----~-~~~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDM-CRDVLAPGGSFVVKV-----F-QGEGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHH-HHHHcCCCCEEEEEE-----e-cCcCHHHHHHHHHhCceEEEE
Confidence 46899999997432211111000 02457787 799999999999853 2 224566778888899998877
Q ss_pred EE
Q 019550 251 YT 252 (339)
Q Consensus 251 ~~ 252 (339)
+.
T Consensus 188 ~K 189 (209)
T PRK11188 188 RK 189 (209)
T ss_pred EC
Confidence 53
No 104
>PHA03412 putative methyltransferase; Provisional
Probab=98.97 E-value=3.9e-09 Score=96.49 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK---SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
...+|||+|||+|.++..+++.. +..+|++||||+.+++.|+++. ++++++.+|+..+. ..++||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------~~~~~~~~D~~~~~--~~~~FDl 117 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------PEATWINADALTTE--FDTLFDM 117 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------cCCEEEEcchhccc--ccCCccE
Confidence 36799999999999999888642 3468999999999999999763 45789999987542 2468999
Q ss_pred EEecCCCCCCC-----C-ccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 182 IFGDLADPVEG-----G-PCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 182 Ii~D~~d~~~~-----~-p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
||+++|-.... + ....+....+++. +.+ |.+.|.+++
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~-A~~-Ll~~G~~IL 160 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIER-ASQ-IARQGTFII 160 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHH-HHH-HcCCCEEEe
Confidence 99999832110 0 1112334567777 666 555555554
No 105
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.97 E-value=3.8e-09 Score=98.87 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=79.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
...++||+||||+|..+..+++.. +..+|++||+++.+++.|+++..... -++++++.+|..+ +....+.||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g----~~~v~~~~~d~~~-l~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG----YTNVEFRLGEIEA-LPVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC----CCCEEEEEcchhh-CCCCCCceeEE
Confidence 356799999999999887777653 33589999999999999999875432 3588999999754 33234689999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+++..-.. .+ -....++. +.+.|+|||.+++.
T Consensus 151 i~~~v~~~--~~----d~~~~l~~-~~r~LkpGG~l~i~ 182 (272)
T PRK11873 151 ISNCVINL--SP----DKERVFKE-AFRVLKPGGRFAIS 182 (272)
T ss_pred EEcCcccC--CC----CHHHHHHH-HHHHcCCCcEEEEE
Confidence 98864221 11 12477888 79999999999875
No 106
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.96 E-value=5.1e-09 Score=96.83 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=95.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH--HHHhcCCcee
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA--ELEKRNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~yD 180 (339)
.+..+||+.|.|+|++...+++. .|..+|...|+.++-.+.|+++|..... ..++++.+.|..+ |-......+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---DDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC---CTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC---CCCceeEecceecccccccccCccc
Confidence 45789999999999999999863 4568999999999999999999987643 5689999999863 3112246799
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHcccc-CCCcEEEEecCCCCccCchhhHHHHHHHHHh-HCCceEEEEE
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKL-NDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ-VFKHVVAYTA 253 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L-~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~-~F~~v~~~~~ 253 (339)
.|++|.++|| +.+.. +.++| ++||++++.+ || .+........|++ -|..+..+.+
T Consensus 116 avfLDlp~Pw-----------~~i~~-~~~~L~~~gG~i~~fs--P~----ieQv~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 116 AVFLDLPDPW-----------EAIPH-AKRALKKPGGRICCFS--PC----IEQVQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp EEEEESSSGG-----------GGHHH-HHHHE-EEEEEEEEEE--SS----HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEeCCCHH-----------HHHHH-HHHHHhcCCceEEEEC--CC----HHHHHHHHHHHHHCCCeeeEEEEE
Confidence 9999999998 44667 78899 8999999874 43 3456667777776 3666655543
No 107
>PTZ00146 fibrillarin; Provisional
Probab=98.95 E-value=3.3e-08 Score=93.24 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=97.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCcee
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~yD 180 (339)
.+..+||+||||+|.++..++..-+ ...|++||+++++.+-..+.... .+++..+.+|++.- +....+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~------r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK------RPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh------cCCCEEEECCccChhhhhcccCCCC
Confidence 4456899999999999999998643 35899999999765433322111 25788999998642 122235799
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC---chhhHHHHHHHHHhH-CCceEEEEEeec
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT---HKEVFSSIYNTIKQV-FKHVVAYTAHVP 256 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~---~~~~~~~i~~~l~~~-F~~v~~~~~~iP 256 (339)
+|++|...|. . ...+... +++.|+|||.+++..-..+... ..+.+.+-.+.|++. |..+... .++
T Consensus 205 vV~~Dva~pd---q-----~~il~~n-a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v--~L~ 273 (293)
T PTZ00146 205 VIFADVAQPD---Q-----ARIVALN-AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL--TLE 273 (293)
T ss_pred EEEEeCCCcc---h-----HHHHHHH-HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE--ecC
Confidence 9999997543 1 2244556 6889999999887432221111 122344445778877 7655443 355
Q ss_pred ccCCceeEEEEecCC
Q 019550 257 SFADTWGWVMASDQP 271 (339)
Q Consensus 257 ~~~~~~~~~~as~~p 271 (339)
.|.....++++..++
T Consensus 274 Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 274 PFERDHAVVIGVYRP 288 (293)
T ss_pred CccCCcEEEEEEEcC
Confidence 566556677775543
No 108
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.94 E-value=3.6e-09 Score=102.02 Aligned_cols=111 Identities=22% Similarity=0.101 Sum_probs=82.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+|||+|||+|+++.+++. . ..+++++|+|+.+++.|++++...+. +.++++.+|+.+. ....++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~-~-~~~v~g~Di~~~~~~~a~~nl~~~g~----~~i~~~~~D~~~l-~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGL-M-GAKVIGCDIDWKMVAGARINLEHYGI----EDFFVKRGDATKL-PLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHH-h-CCeEEEEcCCHHHHHHHHHHHHHhCC----CCCeEEecchhcC-CcccCCCCEEE
Confidence 3456899999999999998776 3 47899999999999999999875432 3488999998763 33347899999
Q ss_pred ecCCCCCCCCcccc---CCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQ---LYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~---L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+|+|-......... -...++++. +++.|+|||.+++..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~-~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEE-FHEVLKSEGWIVYAV 294 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHH-HHHHccCCcEEEEEE
Confidence 99874321111111 113578888 799999999988764
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.94 E-value=2e-08 Score=100.24 Aligned_cols=136 Identities=19% Similarity=0.182 Sum_probs=91.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH-hcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE-KRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~yDvIi 183 (339)
+..+|||+|||.|+.+..+++..+..+|+++|+++..++.+++++...+. .-++.+..+|+..... ...++||.|+
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~---~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL---TIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeccccccccccccccccCEEE
Confidence 45789999999999999998866567999999999999999999875432 1234446677643211 1246799999
Q ss_pred ecCCCCCCC----Ccc--ccC----------CcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 184 GDLADPVEG----GPC--YQL----------YTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 184 ~D~~d~~~~----~p~--~~L----------~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
+|++-...+ .|. ... ...++++. +.+.|+|||.|+..+.+. ..+....+.+.+.+.+|.
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~-a~~~LkpgG~lvystcs~----~~~Ene~~v~~~l~~~~~ 389 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA-IWPLLKTGGTLVYATCSV----LPEENSEQIKAFLQEHPD 389 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH-HHHhcCCCcEEEEEeCCC----ChhhCHHHHHHHHHhCCC
Confidence 998732110 110 000 02568888 788999999999876543 233344555666666665
Q ss_pred e
Q 019550 248 V 248 (339)
Q Consensus 248 v 248 (339)
.
T Consensus 390 ~ 390 (426)
T TIGR00563 390 F 390 (426)
T ss_pred C
Confidence 4
No 110
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=93.26 Aligned_cols=111 Identities=21% Similarity=0.194 Sum_probs=95.6
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC--CceeEEEe
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN--EKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~yDvIi~ 184 (339)
.-+|+||||.|....++++..|.....+||+...++..|-+.....+ -++++++..||.+.+.... ++.|-|.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~----l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG----LKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC----CCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 46999999999999999999999999999999999998888876543 2499999999999997753 48999999
Q ss_pred cCCCCCCCCc--cccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGP--CYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p--~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.-+|||.... -.+|...+|++. +++.|+|||.+-+.+
T Consensus 126 ~FPDPWpKkRH~KRRl~~~~fl~~-~a~~Lk~gG~l~~aT 164 (227)
T COG0220 126 NFPDPWPKKRHHKRRLTQPEFLKL-YARKLKPGGVLHFAT 164 (227)
T ss_pred ECCCCCCCccccccccCCHHHHHH-HHHHccCCCEEEEEe
Confidence 9999984322 257899999999 899999999998875
No 111
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.92 E-value=4.4e-09 Score=99.55 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=77.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++++|||||||+|..+..+++. + .+|+++|+++.+++.+++..... .-++++...|....- ..++||+|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g-~~V~avD~s~~ai~~~~~~~~~~-----~l~v~~~~~D~~~~~--~~~~fD~I~ 189 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G-FDVTAVDINQQSLENLQEIAEKE-----NLNIRTGLYDINSAS--IQEEYDFIL 189 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C-CEEEEEECCHHHHHHHHHHHHHc-----CCceEEEEechhccc--ccCCccEEE
Confidence 35679999999999999999873 3 68999999999999999887543 236888888875431 257899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
+...-... .+ . ....+++. +++.|+|||++++
T Consensus 190 ~~~vl~~l-~~-~--~~~~~l~~-~~~~LkpgG~~l~ 221 (287)
T PRK12335 190 STVVLMFL-NR-E--RIPAIIKN-MQEHTNPGGYNLI 221 (287)
T ss_pred EcchhhhC-CH-H--HHHHHHHH-HHHhcCCCcEEEE
Confidence 88642210 00 0 12478888 7999999998554
No 112
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.91 E-value=5.9e-09 Score=105.23 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=80.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|+++.... ..+++++.+|+.+. .-..++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----~~~v~~~~~d~~~~-~~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----KCSVEFEVADCTKK-TYPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----CCceEEEEcCcccC-CCCCCCEEEEE
Confidence 456799999999999999888865 468999999999999999875422 35799999997642 11246899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+...-.. -+ -...+++. +++.|+|||.+++..
T Consensus 338 s~~~l~h--~~----d~~~~l~~-~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILH--IQ----DKPALFRS-FFKWLKPGGKVLISD 369 (475)
T ss_pred ECCcccc--cC----CHHHHHHH-HHHHcCCCeEEEEEE
Confidence 9654211 01 13478898 899999999988763
No 113
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.91 E-value=1e-08 Score=89.35 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=76.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...+||+||||.|.++.++++. ..++++||+|+.+++.+++++.. .++++++.+|+.++.. ....||.|+.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~------~~~v~ii~~D~~~~~~-~~~~~d~vi~ 83 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA------ADNLTVIHGDALKFDL-PKLQPYKVVG 83 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc------CCCEEEEECchhcCCc-cccCCCEEEE
Confidence 4568999999999999999985 47899999999999999998743 3689999999987632 2246999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHcc-ccCCCcEEEEecC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKP-KLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~-~L~~gGilv~~~~ 223 (339)
|++-.. +.+.+..++.. .+.++|++++|..
T Consensus 84 n~Py~~---------~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 84 NLPYNI---------STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred CCCccc---------HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 986332 22444442432 3458999999854
No 114
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=4.5e-09 Score=95.08 Aligned_cols=113 Identities=25% Similarity=0.285 Sum_probs=79.4
Q ss_pred hHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH
Q 019550 90 IYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA 168 (339)
Q Consensus 90 ~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~ 168 (339)
.+.+++.++. ..+..+||+||+|+|..+..+++..+ ..+|+.||+++.+++.|++++.... ..+++++++|+
T Consensus 60 ~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~----~~nv~~~~gdg 132 (209)
T PF01135_consen 60 MVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG----IDNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT----THSEEEEES-G
T ss_pred HHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc----cCceeEEEcch
Confidence 3445555333 24567999999999999987776533 3579999999999999999987653 35899999999
Q ss_pred HHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 169 KAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 169 ~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
..-+.. ...||.|++...-+. -| .. +.+.|++||+|++-.+
T Consensus 133 ~~g~~~-~apfD~I~v~~a~~~--ip----------~~-l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 133 SEGWPE-EAPFDRIIVTAAVPE--IP----------EA-LLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGTTGG-G-SEEEEEESSBBSS--------------HH-HHHTEEEEEEEEEEES
T ss_pred hhcccc-CCCcCEEEEeeccch--HH----------HH-HHHhcCCCcEEEEEEc
Confidence 765543 367999999986432 22 12 3346999999998653
No 115
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=6.9e-09 Score=93.64 Aligned_cols=100 Identities=20% Similarity=0.205 Sum_probs=76.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||||+|..+..+++.. .++++||+++++++.|++++.... -.+++++.+|+.+.+. ..++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~----~~~v~~~~~d~~~~~~-~~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG----LHNVSVRHGDGWKGWP-AYAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC----CCceEEEECCcccCCC-cCCCcCEEE
Confidence 346799999999999998777643 489999999999999999987542 2459999999865332 236899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
++..-+. ..+. +.+.|+|||++++..+
T Consensus 150 ~~~~~~~------------~~~~-l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPE------------IPRA-LLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchh------------hhHH-HHHhcCCCcEEEEEEc
Confidence 9874221 1234 5678999999998754
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.91 E-value=7.2e-09 Score=94.15 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=81.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+..+||+||||+|..+..+++..+ ..+++++|+++.+++.+++++..... .++++++.+|..+.. ...+.||+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~-~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL---SGNVEFVQGDAEALP-FPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc---ccCeEEEecccccCC-CCCCCccEEE
Confidence 457999999999999999988665 58999999999999999998764321 467899999986542 2346899998
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-.. .+ ...++++. +.+.|+|||.+++-
T Consensus 127 ~~~~l~~--~~----~~~~~l~~-~~~~L~~gG~li~~ 157 (239)
T PRK00216 127 IAFGLRN--VP----DIDKALRE-MYRVLKPGGRLVIL 157 (239)
T ss_pred Eeccccc--CC----CHHHHHHH-HHHhccCCcEEEEE
Confidence 7643221 01 13578888 79999999987654
No 117
>PRK08317 hypothetical protein; Provisional
Probab=98.91 E-value=6.7e-09 Score=94.02 Aligned_cols=106 Identities=19% Similarity=0.175 Sum_probs=80.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.++.+||+||||+|..+..++++. +..+++++|+++.+++.+++..... .++++++.+|..+. ....++||+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-----~~~~~~~~~d~~~~-~~~~~~~D~v 91 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-----GPNVEFVRGDADGL-PFPDGSFDAV 91 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-----CCceEEEecccccC-CCCCCCceEE
Confidence 456799999999999999998865 5679999999999999999873221 46789999987542 2234789999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++...-... + -...+++. +.+.|+|||.+++..
T Consensus 92 ~~~~~~~~~--~----~~~~~l~~-~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 92 RSDRVLQHL--E----DPARALAE-IARVLRPGGRVVVLD 124 (241)
T ss_pred EEechhhcc--C----CHHHHHHH-HHHHhcCCcEEEEEe
Confidence 987642210 1 12478898 799999999887653
No 118
>PRK06922 hypothetical protein; Provisional
Probab=98.91 E-value=7.2e-09 Score=106.58 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=82.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH-hcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE-KRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~yDvIi 183 (339)
++.+|||||||+|..+..+++..+..+++++|+++.+++.|++..... ..+++++.+|+.+.-. -.+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-----g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-----GRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-----CCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999988887677789999999999999999875432 3578899999876311 1346899999
Q ss_pred ecCCCCC-------CCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPV-------EGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~-------~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+...-.. .......-....+++. +.++|+|||.+++..
T Consensus 493 sn~vLH~L~syIp~~g~~f~~edl~kiLre-I~RVLKPGGrLII~D 537 (677)
T PRK06922 493 YSSILHELFSYIEYEGKKFNHEVIKKGLQS-AYEVLKPGGRIIIRD 537 (677)
T ss_pred EchHHHhhhhhcccccccccHHHHHHHHHH-HHHHcCCCcEEEEEe
Confidence 8753110 0000000123578898 799999999998864
No 119
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.90 E-value=7.4e-09 Score=100.02 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=90.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...+||+||||+|.++..+++..+..+++++|+++++++.|++... .++++++.+|+.+ +....+.||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~-lp~~~~sFDvVIs 184 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAED-LPFPTDYADRYVS 184 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHh-CCCCCCceeEEEE
Confidence 4568999999999999888876666799999999999999998753 2468899999765 2223468999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec-CCCCccCc---------hhhHHHHHHHHHhH-CCceEE
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA-GPAGIFTH---------KEVFSSIYNTIKQV-FKHVVA 250 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~-~~~~~~~~---------~~~~~~i~~~l~~~-F~~v~~ 250 (339)
...-.. .+ -....+++ +.+.|+|||.+++-. ..+..+.. .....++.+.++++ |..+..
T Consensus 185 ~~~L~~--~~----d~~~~L~e-~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 185 AGSIEY--WP----DPQRGIKE-AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred cChhhh--CC----CHHHHHHH-HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 653221 11 12367888 799999999987632 12211110 01235566677776 665554
No 120
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.90 E-value=1.9e-08 Score=96.43 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=81.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+.+|||+|||+|.++..+++. ..+|++||+++.+++.|+++...++ -++++++.+|+.+++....++||+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~----l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELG----LTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 4679999999999999999883 3789999999999999999987653 257999999999887544467999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
|++.. + ...+..+. + ..++|++++.+.+.+.
T Consensus 247 dPPr~---G-----~~~~~~~~-l-~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 247 NPPRR---G-----IGKELCDY-L-SQMAPRFILYSSCNAQ 277 (315)
T ss_pred CCCCC---C-----ccHHHHHH-H-HHcCCCeEEEEECCcc
Confidence 98732 2 12344554 3 3478888888776543
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.9e-08 Score=96.68 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+||+||||+|..+..+++..+. .+|++||+++++++.|++.+...+ -++++++.+|+.+.+.. .+.||+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g----~~nV~~i~gD~~~~~~~-~~~fD~I 153 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG----IENVIFVCGDGYYGVPE-FAPYDVI 153 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEeCChhhcccc-cCCccEE
Confidence 34579999999999999988876542 479999999999999999886543 35799999998766543 2579999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+++..-+ +.... +.+.|+|||.+++..
T Consensus 154 i~~~g~~------------~ip~~-~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 154 FVTVGVD------------EVPET-WFTQLKEGGRVIVPI 180 (322)
T ss_pred EECCchH------------HhHHH-HHHhcCCCCEEEEEe
Confidence 9985422 11223 456899999988754
No 122
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.5e-08 Score=78.02 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=79.7
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+++++|||.|.....+++ .+..+++++|+++..++.+++..... ...+++++.+|..++......+||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL----LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc----cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999888 56789999999999999998532222 2468999999998876534578999999987
Q ss_pred CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 188 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 188 d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.... .-....+++. +.+.|+++|.+++.
T Consensus 76 ~~~~-----~~~~~~~l~~-~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL-----VEDLARFLEE-ARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh-----hhHHHHHHHH-HHHHcCCCCEEEEE
Confidence 4310 1124577887 78899999998864
No 123
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.88 E-value=1.1e-08 Score=92.09 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=80.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.++.+||++|||.|..+..+++..+. .+++++|+++.+++.+++.+. . .++++++.+|+.+.. ...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-----~~~i~~~~~d~~~~~-~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-----PLNIEFIQADAEALP-FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-----CCCceEEecchhcCC-CCCCcEEEE
Confidence 35789999999999999999886654 689999999999999999876 1 468899999987643 234689999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++...-.. .+ ....+++. +++.|+|||.+++.
T Consensus 111 ~~~~~~~~--~~----~~~~~l~~-~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 111 TIAFGLRN--VT----DIQKALRE-MYRVLKPGGRLVIL 142 (223)
T ss_pred EEeeeeCC--cc----cHHHHHHH-HHHHcCCCcEEEEE
Confidence 88653211 01 13478888 79999999988764
No 124
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.88 E-value=1.5e-08 Score=99.65 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=82.9
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecC
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDL 186 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 186 (339)
.+|||++||+|..+..+++..+..+|+++|+|+..++.+++++..++. .+++++.+|+..++.. .++||+|++|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~----~~~~v~~~Da~~~l~~-~~~fD~V~lDP 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL----ENEKVFNKDANALLHE-ERKFDVVDIDP 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CceEEEhhhHHHHHhh-cCCCCEEEECC
Confidence 589999999999999988766667999999999999999999987742 4578999999998864 46799999998
Q ss_pred CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 187 ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 187 ~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+ . . ..+|++. +-+.++++|++.+..
T Consensus 134 ~-G---s------~~~~l~~-al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-G---S------PAPFLDS-AIRSVKRGGLLCVTA 158 (382)
T ss_pred C-C---C------cHHHHHH-HHHHhcCCCEEEEEe
Confidence 7 2 1 2377777 567899999998763
No 125
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.87 E-value=2.4e-08 Score=98.02 Aligned_cols=103 Identities=10% Similarity=0.102 Sum_probs=82.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
..++|||+|||+|.++.+++. . ..+|++||+|+.+++.|+++...++. ++++++.+|+.+++....++||+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~-~~~v~~vE~~~~av~~a~~N~~~~~~----~~~~~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-P-DTQLTGIEIESEAIACAQQSAQMLGL----DNLSFAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-c-CCeEEEEECCHHHHHHHHHHHHHcCC----CcEEEEECCHHHHHHhcCCCCCEEEE
Confidence 357899999999999999886 3 47899999999999999999876532 48999999999988544456999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
|||.. | ...++.+. +. .++|++++.+.+.
T Consensus 307 DPPr~---G-----~~~~~l~~-l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 307 NPPRR---G-----IGKELCDY-LS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCCC---C-----CcHHHHHH-HH-hcCCCeEEEEEeC
Confidence 99842 2 23567776 43 5899999888753
No 126
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.87 E-value=3.1e-08 Score=87.87 Aligned_cols=132 Identities=14% Similarity=0.189 Sum_probs=89.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+.-.++|++|||.|.+...++.+. .+++++|+++..++.||+.+.. -++|+++..|..++. ..++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~------~~~V~~~~~dvp~~~--P~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG------LPHVEWIQADVPEFW--PEGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------SSEEEEES-TTT-----SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC------CCCeEEEECcCCCCC--CCCCeeEEE
Confidence 344689999999999999998864 6899999999999999998764 378999999987764 468999999
Q ss_pred ecCCCCCCCCccccCCc----HHHHHHHHccccCCCcEEEEecCCC--C-ccCchhhHHHHHHHHHhHCCceEEEEE
Q 019550 184 GDLADPVEGGPCYQLYT----KSFYERILKPKLNDNGIFVTQAGPA--G-IFTHKEVFSSIYNTIKQVFKHVVAYTA 253 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t----~ef~~~~~~~~L~~gGilv~~~~~~--~-~~~~~~~~~~i~~~l~~~F~~v~~~~~ 253 (339)
+.-. ...|.. ..+.+. +.++|+|||.|++-.-.. | .|.+...-+.+.+.+++.+-.|.....
T Consensus 112 ~SEV-------lYYL~~~~~L~~~l~~-l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~ 180 (201)
T PF05401_consen 112 LSEV-------LYYLDDAEDLRAALDR-LVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVEC 180 (201)
T ss_dssp EES--------GGGSSSHHHHHHHHHH-HHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEE
T ss_pred EehH-------hHcCCCHHHHHHHHHH-HHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEE
Confidence 8753 122222 236676 678999999998732100 0 033333456788888888888765543
No 127
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.86 E-value=3.7e-08 Score=98.81 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=80.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh---cCCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK---RNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~---~~~~yDv 181 (339)
+..+|||+|||+|.++..+++.. .+|++||+++.+++.|++++..++ -.+++++.+|+.+++.. ..++||+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~fD~ 370 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG----LDNVTFYHANLEEDFTDQPWALGGFDK 370 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC----CCceEEEEeChHHhhhhhhhhcCCCCE
Confidence 45789999999999999988753 689999999999999999987653 24699999999887643 2357999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
|++|++-. +. .+..+. +. .|++++++.+.+.+
T Consensus 371 Vi~dPPr~---g~------~~~~~~-l~-~~~~~~ivyvSCnp 402 (443)
T PRK13168 371 VLLDPPRA---GA------AEVMQA-LA-KLGPKRIVYVSCNP 402 (443)
T ss_pred EEECcCCc---Ch------HHHHHH-HH-hcCCCeEEEEEeCh
Confidence 99999743 11 255566 44 47999998887643
No 128
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.86 E-value=1.2e-08 Score=97.16 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=79.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+|||||||+|..+.+++++.|..+++++|+ |.+++.++++....+. .+|++++.+|+.+. .-..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl---~~rv~~~~~d~~~~---~~~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV---ADRMRGIAVDIYKE---SYPEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc---cceEEEEecCccCC---CCCCCCEEE
Confidence 3457999999999999999999888889999998 8999999998765432 46899999998642 123479987
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.-.-... .+ -.....++. ++++|+|||.+++.
T Consensus 221 ~~~~lh~~-~~---~~~~~il~~-~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSA-NE---QLSTIMCKK-AFDAMRSGGRLLIL 253 (306)
T ss_pred eEhhhhcC-Ch---HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 65431110 11 012367888 79999999998775
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.86 E-value=1.3e-08 Score=100.16 Aligned_cols=101 Identities=24% Similarity=0.347 Sum_probs=77.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||||.|.++..++++.+ .+|+++|+++++++.|++... ...+++..+|..+. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g-~~V~giDlS~~~l~~A~~~~~-------~l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYG-VSVVGVTISAEQQKLAQERCA-------GLPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhc-------cCeEEEEECchhhc----CCCCCEEE
Confidence 3567999999999999999998664 689999999999999998763 13488888997543 46899998
Q ss_pred ecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+... ... +. -.-..+++. +++.|+|||.++++.
T Consensus 234 s~~~~ehv--g~---~~~~~~l~~-i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 234 SVGMFEHV--GP---KNYRTYFEV-VRRCLKPDGLFLLHT 267 (383)
T ss_pred EeCchhhC--Ch---HHHHHHHHH-HHHHcCCCcEEEEEE
Confidence 7543 221 11 012478998 899999999998874
No 130
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.86 E-value=2.1e-08 Score=96.54 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
..++|||||||+|..+..+++. +..+|++||+++.++..++..-.... .+++++++.+|..+. .. .++||+|++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~---~~~~i~~~~~d~e~l-p~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLG---NDQRAHLLPLGIEQL-PA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcC---CCCCeEEEeCCHHHC-CC-cCCcCEEEE
Confidence 4689999999999999999885 44679999999998864332211111 146899999997543 33 578999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
-..-..... ...+++. +++.|+|||.+++.
T Consensus 196 ~~vl~H~~d------p~~~L~~-l~~~LkpGG~lvl~ 225 (322)
T PRK15068 196 MGVLYHRRS------PLDHLKQ-LKDQLVPGGELVLE 225 (322)
T ss_pred CChhhccCC------HHHHHHH-HHHhcCCCcEEEEE
Confidence 543111001 2478898 89999999999876
No 131
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.4e-08 Score=87.76 Aligned_cols=100 Identities=21% Similarity=0.234 Sum_probs=77.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.+.|+|+|||+|.++..++. .+..+|.+||+||+.++++|++.+.. ..++++++.|..++ ..++|.+|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l-----~g~v~f~~~dv~~~----~~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEEL-----LGDVEFVVADVSDF----RGKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhh-----CCceEEEEcchhhc----CCccceEEE
Confidence 467899999999999997776 67899999999999999999998753 47899999997654 678999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+|-... ..+ ..++|++. +.+.- +.++.+.
T Consensus 115 NPPFG~~---~rh-aDr~Fl~~-Ale~s--~vVYsiH 144 (198)
T COG2263 115 NPPFGSQ---RRH-ADRPFLLK-ALEIS--DVVYSIH 144 (198)
T ss_pred CCCCccc---ccc-CCHHHHHH-HHHhh--heEEEee
Confidence 9985432 122 57788887 44322 4566554
No 132
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.84 E-value=1.3e-08 Score=91.66 Aligned_cols=130 Identities=10% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+++.+||+||||+|..+..+++..+..++++||+++++++.|++++ ++++++.+|+.+. ...++||+|+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------~~~~~~~~d~~~~--~~~~sfD~V~ 110 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------PNINIIQGSLFDP--FKDNFFDLVL 110 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------CCCcEEEeeccCC--CCCCCEEEEE
Confidence 5677899999999999999988656689999999999999999863 3567888887662 2357899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCcc------CchhhH-HHHHHHHHhHCCceEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIF------THKEVF-SSIYNTIKQVFKHVVA 250 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~------~~~~~~-~~i~~~l~~~F~~v~~ 250 (339)
+...-... .| . .-..+++. +.+.++ +-+++...-.|... .....+ ++..+.+.+.||+...
T Consensus 111 ~~~vL~hl-~p-~--~~~~~l~e-l~r~~~-~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~ 178 (204)
T TIGR03587 111 TKGVLIHI-NP-D--NLPTAYRE-LYRCSN-RYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKL 178 (204)
T ss_pred ECChhhhC-CH-H--HHHHHHHH-HHhhcC-cEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCccee
Confidence 87652110 11 1 12467777 676663 23344332221100 001112 3334666677887554
No 133
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.82 E-value=2.7e-08 Score=86.76 Aligned_cols=148 Identities=20% Similarity=0.342 Sum_probs=90.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+..+||+||||.|.++..+++. +. ..+++||.+++.+++|+.-...... +..+++.+.|..+- ....++||+|+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~---~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGF---SNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCC---CcceeEEEeeccCC-cccccceeEEe
Confidence 3459999999999999999974 33 3499999999999998876554432 34488888887542 12246677775
Q ss_pred ecCC-CCCC---CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeeccc-
Q 019550 184 GDLA-DPVE---GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSF- 258 (339)
Q Consensus 184 ~D~~-d~~~---~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~- 258 (339)
--.+ |... .++-.++ .-++.. +.+.|+|||++++.++. |. ..++.+.+.. |.-.+.++++.|+|
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~-v~~ll~~~gifvItSCN---~T----~dELv~~f~~-~~f~~~~tvp~ptF~ 210 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDS-VEKLLSPGGIFVITSCN---FT----KDELVEEFEN-FNFEYLSTVPTPTFM 210 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhh-HhhccCCCcEEEEEecC---cc----HHHHHHHHhc-CCeEEEEeeccceEE
Confidence 4332 1110 0121222 234555 78999999999987532 32 2334444443 22334455556664
Q ss_pred -CCceeEEEEe
Q 019550 259 -ADTWGWVMAS 268 (339)
Q Consensus 259 -~~~~~~~~as 268 (339)
+|..|..++|
T Consensus 211 FgG~~G~tvt~ 221 (227)
T KOG1271|consen 211 FGGSVGSTVTS 221 (227)
T ss_pred eccccccEEEE
Confidence 5555544443
No 134
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.82 E-value=2.7e-08 Score=90.85 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+..+||+||||+|.++..+++. ..+++++|+++.+++.+++++... ..+++++..|..++.....++||+|++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fD~Ii~ 120 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES-----GLKIDYRQTTAEELAAEHPGQFDVVTC 120 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc-----CCceEEEecCHHHhhhhcCCCccEEEE
Confidence 4678999999999999988874 368999999999999999887643 235788889988776555578999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
...-.. .+ ...++++. +.+.|+|||.+++..
T Consensus 121 ~~~l~~--~~----~~~~~l~~-~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 121 MEMLEH--VP----DPASFVRA-CAKLVKPGGLVFFST 151 (233)
T ss_pred hhHhhc--cC----CHHHHHHH-HHHHcCCCcEEEEEe
Confidence 653221 11 12477888 799999999988764
No 135
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.82 E-value=3.9e-08 Score=94.21 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=73.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.++|||||||+|..+..+++. +...|++||+++.++..++..-.... ..+++++...|..+. .. ...||+|++
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~---~~~~v~~~~~~ie~l-p~-~~~FD~V~s 194 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLD---NDKRAILEPLGIEQL-HE-LYAFDTVFS 194 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhc---cCCCeEEEECCHHHC-CC-CCCcCEEEE
Confidence 4689999999999998888874 45689999999998865332111111 146788888886543 22 357999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
...-..... -.++++. +++.|+|||.|++..
T Consensus 195 ~gvL~H~~d------p~~~L~e-l~r~LkpGG~Lvlet 225 (314)
T TIGR00452 195 MGVLYHRKS------PLEHLKQ-LKHQLVIKGELVLET 225 (314)
T ss_pred cchhhccCC------HHHHHHH-HHHhcCCCCEEEEEE
Confidence 764211011 2378898 899999999999763
No 136
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.82 E-value=2e-08 Score=94.32 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCC---CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSL---EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~---~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
...+|||+|||+|..+..+++..+. .+++++|+++.+++.|++.. +++++..+|+.+ +.-..+.||+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------~~~~~~~~d~~~-lp~~~~sfD~ 154 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------PQVTFCVASSHR-LPFADQSLDA 154 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------CCCeEEEeeccc-CCCcCCceeE
Confidence 4568999999999999988865432 37999999999999998752 567888888764 2223568999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++... + .+++. +++.|+|||.+++-.
T Consensus 155 I~~~~~-~------------~~~~e-~~rvLkpgG~li~~~ 181 (272)
T PRK11088 155 IIRIYA-P------------CKAEE-LARVVKPGGIVITVT 181 (272)
T ss_pred EEEecC-C------------CCHHH-HHhhccCCCEEEEEe
Confidence 997432 1 22466 688999999998754
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=2.3e-08 Score=90.80 Aligned_cols=110 Identities=19% Similarity=0.273 Sum_probs=80.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccc-----------------------------
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEA----------------------------- 155 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~----------------------------- 155 (339)
.|+.+|||||-.|.+...++++++...|.+||||+..|..|+++++.....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 478999999999999999999999999999999999999999997654210
Q ss_pred ---------cCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCC---CCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 156 ---------FCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVE---GGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 156 ---------~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~---~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...+..+-. -+||.....+||+|++=+-..|. .+- .. -..||+. +.+.|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~---~dfl~~~~~~fDiIlcLSiTkWIHLNwgD-~G--L~~ff~k-is~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLES---DDFLDMIQPEFDIILCLSITKWIHLNWGD-DG--LRRFFRK-ISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEec---chhhhhccccccEEEEEEeeeeEeccccc-HH--HHHHHHH-HHHhhCcCcEEEEc
Confidence 0011111222 23554456789999987653321 000 11 3589999 89999999999986
No 138
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.81 E-value=4.2e-08 Score=96.07 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=85.5
Q ss_pred CeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 107 KTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
-+|||+.+|+|..+.++++.. +..+|+++|+||..++.++++...+. -.+++++.+|+..++....++||+|++|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~----~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS----VENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 489999999999999999863 67899999999999999999998764 2468999999999998766789999999
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++. .| .+|++. +-+.++++|++.+.
T Consensus 122 PfG----s~------~~fld~-al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PFG----TP------APFVDS-AIQASAERGLLLVT 146 (374)
T ss_pred CCC----Cc------HHHHHH-HHHhcccCCEEEEE
Confidence 972 12 378888 67899999998876
No 139
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.80 E-value=5.9e-09 Score=95.66 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCC---CeEEEEccHHHHHHhcCCceeEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSK---KLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~---rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.++|||+|||+|.+..-+++. + ++|+++|+.+++|++|+++.... -..+.+ |+++.+.|+. ...++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl-g-a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E----~~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-G-AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVE----GLTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh-C-CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchh----hccccccee
Confidence 367999999999999999984 3 89999999999999999994321 111112 4666666643 345679999
Q ss_pred EecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++--- .+.. . .++|.+. +.+.|+|+|.+++..
T Consensus 163 vcsevleHV~-d------p~~~l~~-l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHVK-D------PQEFLNC-LSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHHh-C------HHHHHHH-HHHHhCCCCceEeee
Confidence 88543 2211 1 2488997 789999999998764
No 140
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.80 E-value=1e-07 Score=95.25 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDv 181 (339)
+..+|||+|||.|.++..+++. ..+|++||+++.+++.|++++..++ -.+++++.+|+.+++... ..+||+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~----~~nv~~~~~d~~~~l~~~~~~~~~~D~ 365 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG----IANVEFLAGTLETVLPKQPWAGQIPDV 365 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC----CCceEEEeCCHHHHHHHHHhcCCCCCE
Confidence 4578999999999999998874 4689999999999999999987653 358999999998877542 357999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++|++.. + ...++++. +. .|++++++.+.+
T Consensus 366 vi~dPPr~---G-----~~~~~l~~-l~-~l~~~~ivyvsc 396 (431)
T TIGR00479 366 LLLDPPRK---G-----CAAEVLRT-II-ELKPERIVYVSC 396 (431)
T ss_pred EEECcCCC---C-----CCHHHHHH-HH-hcCCCEEEEEcC
Confidence 99999842 2 13577776 44 589999877654
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.75 E-value=5.3e-08 Score=88.12 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=80.5
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+.+||+||||+|.++..+++.. .+++++|+++.+++.+++++.... ..++++..+|+.++....+.+||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDP----LLKIEYRCTSVEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCceEEEeCCHHHhhcCCCCCccEEEe
Confidence 47799999999999999888743 569999999999999999876432 126889999988776544578999998
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
...-..... ...+++. +.+.|++||.+++..
T Consensus 119 ~~~l~~~~~------~~~~l~~-~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHVPD------PQAFIRA-CAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhCCC------HHHHHHH-HHHhcCCCcEEEEEe
Confidence 643111001 2478888 799999999888754
No 142
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=1.8e-07 Score=86.46 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE----ccHHHHHHhcCCc
Q 019550 103 HQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV----NDAKAELEKRNEK 178 (339)
Q Consensus 103 ~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~----~D~~~~l~~~~~~ 178 (339)
|.++..+|++|||+|+++..+++..+...|++||.+++++.+|.++...... ..++.+++ .|...-.+...++
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l---~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL---SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh---cCceEEEecccccccccccccccCc
Confidence 4456689999999999999999888889999999999999999999875543 47787774 4544333334588
Q ss_pred eeEEEecCCC----CCC-CCccccCC---------------cHHHHHHHHccccCCCcEEEEecC
Q 019550 179 FDVIFGDLAD----PVE-GGPCYQLY---------------TKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 179 yDvIi~D~~d----~~~-~~p~~~L~---------------t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+|+|+++++- ... ..|...+| -..++.. +.|+|.|||.+.++..
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~-a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLL-ATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHh-hHhhcccCCeEEEEec
Confidence 9999999972 110 01111111 1245665 6899999999998864
No 143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.74 E-value=3.8e-07 Score=88.87 Aligned_cols=100 Identities=12% Similarity=0.166 Sum_probs=77.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---------C
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---------N 176 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---------~ 176 (339)
+.+|||+|||+|.++..+++. ..+|++||+++++++.|++++..++ -.+++++.+|+.+++... .
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIAANN----IDNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcC----CCcEEEEEcCHHHHHHHHhhcccccccc
Confidence 457999999999999988775 3689999999999999999987664 247999999999988641 1
Q ss_pred ------CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 177 ------EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 177 ------~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.+||+|++|||.. |. ..+.++. +. ++++++.+.+.
T Consensus 272 ~~~~~~~~~d~v~lDPPR~---G~-----~~~~l~~-l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRA---GL-----DPDTCKL-VQ---AYERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCCCC---CC-----cHHHHHH-HH---cCCcEEEEEcC
Confidence 2489999999842 32 3466666 43 37888888754
No 144
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.73 E-value=4.4e-07 Score=88.73 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=78.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc----------
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---------- 175 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---------- 175 (339)
+.+|||++||+|.++..+++. ..+|++||+++.+++.++++...++ -.+++++.+|+.++++..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~----~~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANG----IDNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcccccccc
Confidence 357999999999999987774 4689999999999999999987664 248999999999988642
Q ss_pred -----CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 176 -----NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 176 -----~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
..+||+|++|||.. | ...+.++. +. ++++++.+.+.
T Consensus 281 ~~~~~~~~~D~v~lDPPR~---G-----~~~~~l~~-l~---~~~~ivyvSC~ 321 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRA---G-----LDDETLKL-VQ---AYERILYISCN 321 (362)
T ss_pred cccccCCCCCEEEECCCCC---C-----CcHHHHHH-HH---ccCCEEEEEeC
Confidence 12599999999842 2 23466666 43 37888887753
No 145
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.72 E-value=5.8e-08 Score=92.58 Aligned_cols=111 Identities=15% Similarity=0.114 Sum_probs=76.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCC----c
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNE----K 178 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~----~ 178 (339)
+++.+||++|||+|..++.+++..+ ..++++||+++++++.|++.+.... ..-+++.+++|..+.+..... .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCC
Confidence 4567899999999999999988653 4689999999999999998875321 123466789998765432221 2
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
..+++++..-..- .+ --...+++. +++.|+|||.+++-.
T Consensus 139 ~~~~~~gs~~~~~-~~---~e~~~~L~~-i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 139 RLGFFPGSTIGNF-TP---EEAVAFLRR-IRQLLGPGGGLLIGV 177 (301)
T ss_pred eEEEEecccccCC-CH---HHHHHHHHH-HHHhcCCCCEEEEec
Confidence 2344444432210 11 113478999 799999999998754
No 146
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.72 E-value=4.7e-08 Score=98.73 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH-HHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE-LEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~-l~~~~~~yDvIi 183 (339)
+.++||+||||+|.++..++++ ..+|++||+++++++.+++.... .++++++.+|+... +....++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~------~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH------YKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc------CCceEEEEecccccccCCCCCCEEEEe
Confidence 4568999999999999999885 36899999999999987763221 36789999998542 222346899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-.. -+.. -..++++. +++.|+|||++++.
T Consensus 109 ~~~~l~~--l~~~--~~~~~l~~-~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMY--LSDK--EVENLAER-MVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHh--CCHH--HHHHHHHH-HHHhcCCCeEEEEE
Confidence 9875221 0000 02478888 79999999999874
No 147
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=2.7e-08 Score=89.26 Aligned_cols=100 Identities=21% Similarity=0.378 Sum_probs=76.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+...|||+.||-|.++..++++...+.|.++|++|..++..+++...+.. ..++.++.+|+++++. ...+|.|+
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv---~~~i~~~~~D~~~~~~--~~~~drvi 174 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV---ENRIEVINGDAREFLP--EGKFDRVI 174 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT----TTTEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC---CCeEEEEcCCHHHhcC--ccccCEEE
Confidence 457899999999999999999977778999999999999999999988864 5789999999999987 67899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
++.+.. +.+|+.. +.+.+++||++.
T Consensus 175 m~lp~~----------~~~fl~~-~~~~~~~~g~ih 199 (200)
T PF02475_consen 175 MNLPES----------SLEFLDA-ALSLLKEGGIIH 199 (200)
T ss_dssp E--TSS----------GGGGHHH-HHHHEEEEEEEE
T ss_pred ECChHH----------HHHHHHH-HHHHhcCCcEEE
Confidence 998732 3378887 778899999874
No 148
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.70 E-value=1e-07 Score=87.28 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=80.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCC------CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCc
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSL------EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEK 178 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~------~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~ 178 (339)
+.-++||++||+|-++.-+++|-+. .+|+++||+|.++..+++.-.. ..-..++++.++.+||.+ |.-....
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~-~~l~~~~~~~w~~~dAE~-LpFdd~s 177 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK-RPLKASSRVEWVEGDAED-LPFDDDS 177 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh-cCCCcCCceEEEeCCccc-CCCCCCc
Confidence 4578999999999999999998766 7999999999999999988632 112246789999999865 4444578
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
||...+.-.=.+ .+ --+..+++ ++|.|||||++.+
T Consensus 178 ~D~yTiafGIRN--~t----h~~k~l~E-AYRVLKpGGrf~c 212 (296)
T KOG1540|consen 178 FDAYTIAFGIRN--VT----HIQKALRE-AYRVLKPGGRFSC 212 (296)
T ss_pred ceeEEEecceec--CC----CHHHHHHH-HHHhcCCCcEEEE
Confidence 998777543111 00 12366788 7999999998864
No 149
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.69 E-value=5.4e-08 Score=86.69 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.++|+||||.|..+.++++ .+ -.|++||+++..++.+++..... .-.++....|..++ ..++.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~-~G-~~VtAvD~s~~al~~l~~~a~~~-----~l~i~~~~~Dl~~~--~~~~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLAS-QG-FDVTAVDISPVALEKLQRLAEEE-----GLDIRTRVADLNDF--DFPEEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHH-TT--EEEEEESSHHHHHHHHHHHHHT-----T-TEEEEE-BGCCB--S-TTTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHH-CC-CeEEEEECCHHHHHHHHHHHhhc-----CceeEEEEecchhc--cccCCcCEEE
Confidence 4688999999999999999998 44 68999999999999887765443 23488888996554 2246899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-.. -+. . .-+..++. +++.++|||++++.
T Consensus 100 st~v~~f--L~~-~-~~~~i~~~-m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMF--LQR-E-LRPQIIEN-MKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGG--S-G-G-GHHHHHHH-HHHTEEEEEEEEEE
T ss_pred EEEEecc--CCH-H-HHHHHHHH-HHhhcCCcEEEEEE
Confidence 7643111 010 1 12467888 79999999988764
No 150
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.68 E-value=6.6e-08 Score=87.75 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=74.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhc--------cccCCCCeEEEEccHHHHHHhc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ--------EAFCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~--------~~~~~~rv~v~~~D~~~~l~~~ 175 (339)
++..+||++|||.|.-+.+++++ + -+|++||+++..++.+.+...... ......+++++++|..++-...
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G-~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G-HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C-CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 35579999999999999999984 3 689999999999997543221110 0112467999999987653222
Q ss_pred CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
.++||.|+--..-.. -|. . ....+++. +.+.|+|||++++
T Consensus 111 ~~~fD~i~D~~~~~~--l~~-~-~R~~~~~~-l~~lLkpgG~~ll 150 (213)
T TIGR03840 111 LGPVDAVYDRAALIA--LPE-E-MRQRYAAH-LLALLPPGARQLL 150 (213)
T ss_pred CCCcCEEEechhhcc--CCH-H-HHHHHHHH-HHHHcCCCCeEEE
Confidence 357898875443110 110 1 13467888 8999999996443
No 151
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=6.1e-07 Score=81.11 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=104.3
Q ss_pred CCCCeEEEEecchhHHHHHHHh-cCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-----CC
Q 019550 104 QNPKTVFIMGGGEGSAAREALK-HKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-----NE 177 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~-~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~ 177 (339)
-+|+++|+||.=+|..+..++. .++..+|+++|+|+...++..++.+.... +.+++++++++.+-|.+. ..
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv---~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV---DHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc---cceeeeeecchhhhHHHHHhcCCCC
Confidence 3689999999999998876664 46678999999999999999887665443 689999999999887653 47
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe----cC---CCCccCchhhHHHHH---HHHHhHCCc
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ----AG---PAGIFTHKEVFSSIY---NTIKQVFKH 247 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~----~~---~~~~~~~~~~~~~i~---~~l~~~F~~ 247 (339)
+||++++|..-.. |. .+|+. +-+.|++||++++. .| +|. ......-..+. +.-......
T Consensus 149 tfDfaFvDadK~n--------Y~-~y~e~-~l~Llr~GGvi~~DNvl~~G~v~~p~-~~~~~~~~~~r~~~~~n~~l~~D 217 (237)
T KOG1663|consen 149 TFDFAFVDADKDN--------YS-NYYER-LLRLLRVGGVIVVDNVLWPGVVADPD-VNTPVRGRSIREALNLNKKLARD 217 (237)
T ss_pred ceeEEEEccchHH--------HH-HHHHH-HHhhcccccEEEEeccccCCcccCcc-cCCCcchhhhhhhhhhhhHhccC
Confidence 8999999987332 33 78888 67899999999874 23 221 01110112222 344445566
Q ss_pred eEEEEEeecccCCceeEEEEec
Q 019550 248 VVAYTAHVPSFADTWGWVMASD 269 (339)
Q Consensus 248 v~~~~~~iP~~~~~~~~~~as~ 269 (339)
.+++...+|.++| ..+|.+
T Consensus 218 ~rV~~s~~~igdG---~~i~~k 236 (237)
T KOG1663|consen 218 PRVYISLLPIGDG---ITICRK 236 (237)
T ss_pred cceeeEeeeccCc---eeeecc
Confidence 6777777776544 445543
No 152
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.67 E-value=8.4e-08 Score=86.92 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=73.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+.++|||||||+|.++..+++. ..+|+++|+++++++.|++.+..... ..++++..+|+.+. .++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~---~~~i~~~~~d~~~~----~~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV---AGNVEFEVNDLLSL----CGEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC---CCceEEEECChhhC----CCCcCEEE
Confidence 35789999999999999999874 35899999999999999998764321 24799999997543 27899998
Q ss_pred ecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 184 GDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 184 ~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
+-.. ... +... ....++. +.+.+++++++.+
T Consensus 125 ~~~~l~~~---~~~~--~~~~l~~-i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHY---PASD--MAKALGH-LASLTKERVIFTF 156 (219)
T ss_pred EhhHHHhC---CHHH--HHHHHHH-HHHHhCCCEEEEE
Confidence 7432 111 1001 2356777 6777886666554
No 153
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.64 E-value=8.4e-08 Score=87.38 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=73.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhc--------cccCCCCeEEEEccHHHHHHhc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ--------EAFCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~--------~~~~~~rv~v~~~D~~~~l~~~ 175 (339)
++..+||++|||.|..+.+++++ ..+|++||+++..++.+.+.-.... ..+...+++++.+|..++-...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999983 4689999999999997643211110 0123578999999988763322
Q ss_pred CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcE
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGI 217 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGi 217 (339)
...||.|+--..-.. -|. . ....+++. +.+.|+|||+
T Consensus 114 ~~~fd~v~D~~~~~~--l~~-~-~R~~~~~~-l~~lL~pgG~ 150 (218)
T PRK13255 114 LADVDAVYDRAALIA--LPE-E-MRERYVQQ-LAALLPAGCR 150 (218)
T ss_pred CCCeeEEEehHhHhh--CCH-H-HHHHHHHH-HHHHcCCCCe
Confidence 357898885432110 010 0 13578888 8999999985
No 154
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=9.8e-08 Score=84.86 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=79.2
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeE-EEEccHHHHHHhcCCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLN-LVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~-v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...||++|||+|..-...- ..|..+||++|.+|.|-+++.+.+.... .+++. ++++|+.+.-+-.+.+||.|+.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k----~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK----PLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc----CcceEEEEeechhcCcccccCCeeeEEE
Confidence 3468999999999877532 2378999999999999999999887552 57776 9999998765456789999988
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
...--. .--..+.+++ +++.|+|||++++-
T Consensus 152 TlvLCS------ve~~~k~L~e-~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 152 TLVLCS------VEDPVKQLNE-VRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEec------cCCHHHHHHH-HHHhcCCCcEEEEE
Confidence 764111 1112367888 79999999988764
No 155
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.63 E-value=8e-08 Score=81.67 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=67.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++.++||+||||.|.++..+.+. + .+++++|+++.+++. .+ +.....+... .....++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~--~~------------~~~~~~~~~~-~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK--RN------------VVFDNFDAQD-PPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH--TT------------SEEEEEECHT-HHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh--hh------------hhhhhhhhhh-hhccccchhhHh
Confidence 56789999999999999988764 4 499999999999988 11 1111111111 222457899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+...-.. -+ .-.++++. ++++|+|||++++..
T Consensus 84 ~~~~l~~--~~----d~~~~l~~-l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 84 CNDVLEH--LP----DPEEFLKE-LSRLLKPGGYLVISD 115 (161)
T ss_dssp EESSGGG--SS----HHHHHHHH-HHHCEEEEEEEEEEE
T ss_pred hHHHHhh--cc----cHHHHHHH-HHHhcCCCCEEEEEE
Confidence 9865221 11 13588998 899999999998875
No 156
>PRK05785 hypothetical protein; Provisional
Probab=98.62 E-value=2.3e-07 Score=84.85 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=67.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+.+|||||||+|.+++.+++.. ..+|++||++++|++.|++.. ..+.+|+.+ +.-..++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------------~~~~~d~~~-lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------------DKVVGSFEA-LPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------------ceEEechhh-CCCCCCCEEEEEe
Confidence 47899999999999999998864 368999999999999998631 235677654 3334578999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCc
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNG 216 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gG 216 (339)
...-... + -....+++ +++.|+|.+
T Consensus 117 ~~~l~~~--~----d~~~~l~e-~~RvLkp~~ 141 (226)
T PRK05785 117 SFALHAS--D----NIEKVIAE-FTRVSRKQV 141 (226)
T ss_pred cChhhcc--C----CHHHHHHH-HHHHhcCce
Confidence 7642210 1 12468888 799999943
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.60 E-value=3.3e-07 Score=87.94 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=61.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCCCCeEEEE-ccHHHHHHh---cCCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCSKKLNLVV-NDAKAELEK---RNEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~~rv~v~~-~D~~~~l~~---~~~~y 179 (339)
...++||||||+|++...++...+..+++++|||+..++.|++++..+ .. ..+++++. .|....+.. ..++|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l---~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL---NGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC---cCcEEEEEccchhhhhhcccccCCce
Confidence 457899999999888776665445679999999999999999999866 32 35788865 444333332 35689
Q ss_pred eEEEecCCC
Q 019550 180 DVIFGDLAD 188 (339)
Q Consensus 180 DvIi~D~~d 188 (339)
|+|++++|-
T Consensus 191 DlivcNPPf 199 (321)
T PRK11727 191 DATLCNPPF 199 (321)
T ss_pred EEEEeCCCC
Confidence 999999983
No 158
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.59 E-value=3.9e-07 Score=82.72 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.++.+||+||||+|.++..+++.. .+++++|+++.+++.|++.+..... ..+++++.+|. . ...+.||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~---~~~i~~~~~d~-~---~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGL---AGNITFEVGDL-E---SLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCC---ccCcEEEEcCc-h---hccCCcCEEE
Confidence 456799999999999999998753 5699999999999999998765421 25899999993 2 2347799998
Q ss_pred ecC
Q 019550 184 GDL 186 (339)
Q Consensus 184 ~D~ 186 (339)
+..
T Consensus 133 ~~~ 135 (230)
T PRK07580 133 CLD 135 (230)
T ss_pred Ecc
Confidence 754
No 159
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.56 E-value=1.7e-07 Score=84.38 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCC-eEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKK-LNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~r-v~v~~~D~~~~l~~~~~~yDvIi 183 (339)
...++|++|+|-|.+...++... ..+|++||..+..++.|++++... .++ .++++.-.-+|... +.+||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~-----~~~v~~~~~~gLQ~f~P~-~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD-----NPRVGEFYCVGLQDFTPE-EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG-----GCCEEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc-----CCCcceEEecCHhhccCC-CCcEeEEE
Confidence 45789999999999999887643 689999999999999999998652 244 45666655556433 46899999
Q ss_pred ecCCCCCCCCccccCCc---HHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYT---KSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t---~ef~~~~~~~~L~~gGilv~~ 221 (339)
+-..- .+|.. .+|++. |++.|+|+|++++-
T Consensus 128 ~QW~l-------ghLTD~dlv~fL~R-Ck~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCL-------GHLTDEDLVAFLKR-CKQALKPNGVIVVK 160 (218)
T ss_dssp EES-G-------GGS-HHHHHHHHHH-HHHHEEEEEEEEEE
T ss_pred ehHhh-------ccCCHHHHHHHHHH-HHHhCcCCcEEEEE
Confidence 98762 23332 479999 79999999999973
No 160
>PRK06202 hypothetical protein; Provisional
Probab=98.56 E-value=3.8e-07 Score=83.38 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=69.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhc----CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCce
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH----KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~y 179 (339)
.++.+|||||||+|.++..++++ .+..+|++||+++++++.|++.... +++++...|+.. +....++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~-l~~~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-------PGVTFRQAVSDE-LVAEGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-------CCCeEEEEeccc-ccccCCCc
Confidence 45779999999999998887753 2345899999999999999987532 345555555432 22245789
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+|++...-.. -+.. ...++++. +.+.++ |.++++
T Consensus 131 D~V~~~~~lhh--~~d~--~~~~~l~~-~~r~~~--~~~~i~ 165 (232)
T PRK06202 131 DVVTSNHFLHH--LDDA--EVVRLLAD-SAALAR--RLVLHN 165 (232)
T ss_pred cEEEECCeeec--CChH--HHHHHHHH-HHHhcC--eeEEEe
Confidence 99999864221 1100 12468888 788887 444444
No 161
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.55 E-value=1.2e-07 Score=88.79 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCeEEEEecchhH----HHHHHHhcCC-----CCEEEEEEcCHHHHHHHHHhhh-h-----------------hcccc-
Q 019550 105 NPKTVFIMGGGEGS----AAREALKHKS-----LEKVVMCDIDQEVVDFCRRFLT-V-----------------NQEAF- 156 (339)
Q Consensus 105 ~p~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~ar~~f~-~-----------------~~~~~- 156 (339)
.+.+|+++|||+|. ++..++++.+ ..+|+++|+|+.+++.|++..- . ..+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5555555432 3689999999999999998531 0 00000
Q ss_pred ----CCCCeEEEEccHHHHHHhcCCceeEEEecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 157 ----CSKKLNLVVNDAKAELEKRNEKFDVIFGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 157 ----~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
-..++++...|..+.- ...++||+|++--. ... .+ -....+++. +++.|+|||.|++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf--~~---~~~~~~l~~-l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF--DE---PTQRKLLNR-FAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC--CH---HHHHHHHHH-HHHHhCCCeEEEEE
Confidence 0136888888876521 12468999998432 111 00 012468888 79999999999985
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.54 E-value=2.5e-07 Score=92.69 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=73.7
Q ss_pred CCeEEEEecchhHHHHHHHhc----CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 106 PKTVFIMGGGEGSAAREALKH----KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.+.||++|+|.|.+...+++. ....+|.+||.++..+...++....+.- +.+|+++.+|.+++ ..+++.|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w---~~~V~vi~~d~r~v--~lpekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW---GDKVTVIHGDMREV--ELPEKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT---TTTEEEEES-TTTS--CHSS-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC---CCeEEEEeCcccCC--CCCCceeE
Confidence 467999999999998777652 2357999999999888777665433321 47899999998876 23579999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
||+..-... +- ++ ...|.+.. +.+.|+|||+++=+
T Consensus 262 IVSElLGsf--g~-nE-l~pE~Lda-~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 262 IVSELLGSF--GD-NE-LSPECLDA-ADRFLKPDGIMIPS 296 (448)
T ss_dssp EEE---BTT--BT-TT-SHHHHHHH-GGGGEEEEEEEESS
T ss_pred EEEeccCCc--cc-cc-cCHHHHHH-HHhhcCCCCEEeCc
Confidence 999987432 21 23 35678887 79999999999743
No 163
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.52 E-value=2.5e-06 Score=86.00 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++.+|||+|+|.|+=+.+++...+ ...|+++|+++.=++..++++...+ -.++.+...|+..+-....+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G----~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG----VSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeEEEEeCchhhhhhhchhhcCeEE
Confidence 457899999999999988887543 3589999999999999999987643 36789999999876544457899999
Q ss_pred ecCCCCCCC----Ccc-ccCC-----------cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 184 GDLADPVEG----GPC-YQLY-----------TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 184 ~D~~d~~~~----~p~-~~L~-----------t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
+|++-...+ .|. ..-. ..+.+.. +.+.|+|||+||-.+++. ..+....+++.+.+.++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~-A~~~LkpGG~LVYSTCT~----~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIES-AFHALKPGGTLVYSTCTL----NREENQAVCLWLKETYPD 263 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHH-HHHHcCCCcEEEEECCCC----CHHHHHHHHHHHHHHCCC
Confidence 999843210 110 0001 2567777 678999999997655432 345566666666666664
No 164
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.52 E-value=1.8e-07 Score=85.04 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=78.4
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 103 HQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 103 ~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
+...+.++++|||+|-.++.++.|+ ++|+++|++++++++++++++.... +-..++...+..+.+. .+++.|+|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~---~t~~~ms~~~~v~L~g-~e~SVDlI 104 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYC---HTPSTMSSDEMVDLLG-GEESVDLI 104 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccc---cCCccccccccccccC-CCcceeee
Confidence 4455589999999999999999886 6899999999999999999764321 2334445455554442 36789999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCc-EEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNG-IFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gG-ilv~~~ 222 (339)
++--.-++ .-..+||+. +++.|+++| +++++.
T Consensus 105 ~~Aqa~HW-------Fdle~fy~~-~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 105 TAAQAVHW-------FDLERFYKE-AYRVLRKDGGLIAVWN 137 (261)
T ss_pred hhhhhHHh-------hchHHHHHH-HHHHcCCCCCEEEEEE
Confidence 98654333 124589998 899999987 777654
No 165
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.51 E-value=2.6e-06 Score=86.86 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=90.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi 183 (339)
+..-+|+||||.|....++++..|...+.+||+....+..+-+.....+ -.+++++.+|+....... +.+.|-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~----l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN----ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC----CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 3456999999999999999988888999999999887776655543322 368899999976554443 46799999
Q ss_pred ecCCCCCCC--CccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEG--GPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~--~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+.-+|||-. ....+|.+.+|++. +++.|+|||.+-+.+
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~-~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKI-LQDKLKDNGNLVFAS 462 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHH-HHHhcCCCCEEEEEc
Confidence 999999832 22367999999998 899999999998765
No 166
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.48 E-value=4.9e-07 Score=80.04 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=61.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvI 182 (339)
++..+|||||||+|.+...+.+.. ..+..+||||++-+..|.+. .+.++.+|+-+-|... +++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~r-----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVAR-----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHc-----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 456899999999999999888765 57899999999988888753 5789999999888764 5789999
Q ss_pred EecCC
Q 019550 183 FGDLA 187 (339)
Q Consensus 183 i~D~~ 187 (339)
|+.-+
T Consensus 80 Ilsqt 84 (193)
T PF07021_consen 80 ILSQT 84 (193)
T ss_pred ehHhH
Confidence 99876
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.46 E-value=1.5e-06 Score=82.57 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+..+||+||||.|.+...+++. ..+|++||+|+.+++.+++.+..... .++++++.+|+.+.- -..||+|+.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~---~~~v~ii~~Dal~~~---~~~~d~Vva 107 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL---ASKLEVIEGDALKTE---FPYFDVCVA 107 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECCHhhhc---ccccCEEEe
Confidence 4578999999999999999874 36899999999999999998764321 478999999987642 246899999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHcc-ccCCCcEEEEe
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKP-KLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~-~L~~gGilv~~ 221 (339)
+++-.. .+...++. +.. ..-...++++|
T Consensus 108 NlPY~I--------stpil~~l-l~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 108 NVPYQI--------SSPLVFKL-LAHRPLFRCAVLMFQ 136 (294)
T ss_pred cCCccc--------CcHHHHHH-HhcCCCCceeeeeeh
Confidence 987433 24455665 432 22235677777
No 168
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.46 E-value=2.6e-07 Score=84.94 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
...++|||||||.|..+..+++.+|..++++.|+ |.|++.+++ .+|++++.+|.+ ...+. +|+|+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f---~~~P~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF---DPLPV-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT---TCCSS-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH---hhhcc-cccee
Confidence 3567899999999999999999889999999999 999999988 389999999975 34445 99999
Q ss_pred ecCCC-CCCCCccccCCcHHHHHHHHccccCCC--cEEEEe
Q 019550 184 GDLAD-PVEGGPCYQLYTKSFYERILKPKLNDN--GIFVTQ 221 (339)
Q Consensus 184 ~D~~d-~~~~~p~~~L~t~ef~~~~~~~~L~~g--Gilv~~ 221 (339)
+--.- .+ .+ =-....+++ +++.|+|| |.|++.
T Consensus 164 l~~vLh~~--~d---~~~~~iL~~-~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 164 LRHVLHDW--SD---EDCVKILRN-AAAALKPGKDGRLLII 198 (241)
T ss_dssp EESSGGGS---H---HHHHHHHHH-HHHHSEECTTEEEEEE
T ss_pred eehhhhhc--ch---HHHHHHHHH-HHHHhCCCCCCeEEEE
Confidence 86542 21 11 013467888 79999988 987765
No 169
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.46 E-value=2.8e-06 Score=81.51 Aligned_cols=103 Identities=18% Similarity=0.104 Sum_probs=70.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhcc-ccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQE-AFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~-~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++.+|||||||+|.++..+++. ..+|+++|+++.+++.++++...... .....++++...|..+ ..++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----LSGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----cCCCcCEEE
Confidence 4579999999999999999874 36899999999999999998753210 0113467888888643 247899998
Q ss_pred ecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 184 GDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 184 ~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
+-.. ... |... -.++++. +. .+.++|+++.
T Consensus 218 ~~~vL~H~---p~~~--~~~ll~~-l~-~l~~g~liIs 248 (315)
T PLN02585 218 CLDVLIHY---PQDK--ADGMIAH-LA-SLAEKRLIIS 248 (315)
T ss_pred EcCEEEec---CHHH--HHHHHHH-HH-hhcCCEEEEE
Confidence 6432 111 1000 1245666 44 4677777664
No 170
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.44 E-value=1.6e-06 Score=81.76 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=78.8
Q ss_pred hhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHH---HHHhhhhhccccCCCCeEEEE
Q 019550 89 FIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDF---CRRFLTVNQEAFCSKKLNLVV 165 (339)
Q Consensus 89 ~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~---ar~~f~~~~~~~~~~rv~v~~ 165 (339)
..+.+..-|++-+ ..++|||||||.|...-.+++ .+.+.|+++|.++....- ++++++. +.++. ..
T Consensus 102 ~KW~rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~-~GA~~ViGiDP~~lf~~QF~~i~~~lg~------~~~~~-~l 170 (315)
T PF08003_consen 102 WKWDRLLPHLPDL---KGKRVLDIGCNNGYYSFRMLG-RGAKSVIGIDPSPLFYLQFEAIKHFLGQ------DPPVF-EL 170 (315)
T ss_pred chHHHHHhhhCCc---CCCEEEEecCCCcHHHHHHhh-cCCCEEEEECCChHHHHHHHHHHHHhCC------CccEE-Ec
Confidence 4566666666432 578999999999999988887 467889999988776443 3333321 23333 33
Q ss_pred ccHHHHHHhcCCceeEEEecCCC-CCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 166 NDAKAELEKRNEKFDVIFGDLAD-PVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 166 ~D~~~~l~~~~~~yDvIi~D~~d-~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
..+.+.|.. .+.||+|++-.-- +. ..| .+.++. +++.|++||.|++++
T Consensus 171 plgvE~Lp~-~~~FDtVF~MGVLYHr-r~P------l~~L~~-Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 171 PLGVEDLPN-LGAFDTVFSMGVLYHR-RSP------LDHLKQ-LKDSLRPGGELVLET 219 (315)
T ss_pred Ccchhhccc-cCCcCEEEEeeehhcc-CCH------HHHHHH-HHHhhCCCCEEEEEE
Confidence 466777766 6789999987631 11 122 367787 799999999999875
No 171
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.43 E-value=5.6e-07 Score=78.09 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=56.4
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC--CceeEEEec
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN--EKFDVIFGD 185 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~yDvIi~D 185 (339)
.|+|+.||.|+-+..+++.. .+|++||+||.-++.|+.+....+. ..+++++++|..+.++... ..+|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv---~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGV---ADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT----GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCC---CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999964 6899999999999999999876532 5789999999999886643 228999999
Q ss_pred CC
Q 019550 186 LA 187 (339)
Q Consensus 186 ~~ 187 (339)
||
T Consensus 77 PP 78 (163)
T PF09445_consen 77 PP 78 (163)
T ss_dssp --
T ss_pred CC
Confidence 97
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=6.6e-06 Score=79.35 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+...|||+-+|-|.++..++++ +..+|.++||||..++..++++.+|.. ..+++.+.+|++++.... ..+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v---~~~v~~i~gD~rev~~~~-~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKV---EGRVEPILGDAREVAPEL-GVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCc---cceeeEEeccHHHhhhcc-ccCCEEE
Confidence 45789999999999999999985 445599999999999999999998864 466999999999988654 7899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
+..+.. +.+|+.. +.+.|+++|++-.....+
T Consensus 262 m~~p~~----------a~~fl~~-A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLPKS----------AHEFLPL-ALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCCCc----------chhhHHH-HHHHhhcCcEEEEEeccc
Confidence 998842 3477887 788999999988765433
No 173
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=98.42 E-value=1e-06 Score=73.27 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=70.8
Q ss_pred cCCCC--eEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhh
Q 019550 156 FCSKK--LNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEV 233 (339)
Q Consensus 156 ~~~~r--v~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~ 233 (339)
+++.+ ++++.+|+++.|+.....+|+|+.|++.|.. . ..|++.++|+. +++++++||++++.+.
T Consensus 26 ~~~~~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-n--PelWs~e~~~~-l~~~~~~~~~l~Tys~---------- 91 (124)
T PF05430_consen 26 FDDGNVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-N--PELWSEELFKK-LARLSKPGGTLATYSS---------- 91 (124)
T ss_dssp ETTTTEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-S--GGGSSHHHHHH-HHHHEEEEEEEEES------------
T ss_pred ecCCCEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-C--cccCCHHHHHH-HHHHhCCCcEEEEeec----------
Confidence 44444 5789999999999888999999999998862 3 47999999999 8999999999998642
Q ss_pred HHHHHHHHHhHCCceEEEEEeecccCCceeEEEEec
Q 019550 234 FSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD 269 (339)
Q Consensus 234 ~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~ 269 (339)
-..+.+.|.++.-.|.. .|.+|+...++.|++
T Consensus 92 a~~Vr~~L~~aGF~v~~----~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEK----VPGFGRKREMLRAVK 123 (124)
T ss_dssp BHHHHHHHHHCTEEEEE----EE-STTSSEEEEEEC
T ss_pred hHHHHHHHHHcCCEEEE----cCCCCCcchheEEEc
Confidence 13477888888766643 577888788888876
No 174
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=4.8e-06 Score=83.08 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=86.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC--CceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN--EKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~--~~yDvI 182 (339)
...++||+=||.|+++..+++ ...+|++||++++.++.|+++...++. .++++..+|+.++..... ..+|+|
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~i----~N~~f~~~~ae~~~~~~~~~~~~d~V 366 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANGI----DNVEFIAGDAEEFTPAWWEGYKPDVV 366 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcCC----CcEEEEeCCHHHHhhhccccCCCCEE
Confidence 346899999999999999886 468999999999999999999988753 459999999999987753 578999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
++||+.. | ..+++.+. + ..++|..|+-+.+.+
T Consensus 367 vvDPPR~---G-----~~~~~lk~-l-~~~~p~~IvYVSCNP 398 (432)
T COG2265 367 VVDPPRA---G-----ADREVLKQ-L-AKLKPKRIVYVSCNP 398 (432)
T ss_pred EECCCCC---C-----CCHHHHHH-H-HhcCCCcEEEEeCCH
Confidence 9999854 2 25688887 4 478999988887643
No 175
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.35 E-value=1.1e-07 Score=85.83 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=74.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH-hcCCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE-KRNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~yDvIi~ 184 (339)
-+++|+||||+|.++-.+.. -+.++++|||+..|++.|.+.-.. -++.++|+..|++ ..+++||+|..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~--~a~~ltGvDiS~nMl~kA~eKg~Y---------D~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRD--MADRLTGVDISENMLAKAHEKGLY---------DTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHH--HHhhccCCchhHHHHHHHHhccch---------HHHHHHHHHHHhhhccCCcccchhh
Confidence 47899999999999987654 357899999999999999876322 1456788888997 45689999986
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
----+.- | . -..+|-. +...|+|||.+.+.+..
T Consensus 195 aDVl~Yl-G---~--Le~~~~~-aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 195 ADVLPYL-G---A--LEGLFAG-AAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHhh-c---c--hhhHHHH-HHHhcCCCceEEEEecc
Confidence 4322221 1 1 2345665 78999999999987653
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.4e-06 Score=77.73 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=83.5
Q ss_pred hHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcC--CCCEEEEEEcCHHHHHHHHHhhhhh------ccccCCCCe
Q 019550 90 IYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHK--SLEKVVMCDIDQEVVDFCRRFLTVN------QEAFCSKKL 161 (339)
Q Consensus 90 ~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~~~rv 161 (339)
.|.++|-.+--.+ .+..+.|++|.|+|.+...+++.- +....++||.-|++++.+++++... ..-++.+++
T Consensus 68 mha~~le~L~~~L-~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 68 MHATALEYLDDHL-QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHhh-ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 4555544332112 245689999999999887766532 2334489999999999999998532 234567899
Q ss_pred EEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 162 NLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 162 ~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.++++|++.--. ...+||.|.+-+..+. . -+. +-+.|++||.+++-.+
T Consensus 147 ~ivvGDgr~g~~-e~a~YDaIhvGAaa~~--~----------pq~-l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 147 SIVVGDGRKGYA-EQAPYDAIHVGAAASE--L----------PQE-LLDQLKPGGRLLIPVG 194 (237)
T ss_pred EEEeCCccccCC-ccCCcceEEEccCccc--c----------HHH-HHHhhccCCeEEEeec
Confidence 999999986433 3578999999976543 2 234 4467899998887543
No 177
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.31 E-value=2e-06 Score=80.26 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=61.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.++||+||||.|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++- -..||.|+.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~------~~~v~ii~~D~~~~~---~~~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA------AGNVEIIEGDALKVD---LPEFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc------CCCEEEEEeccccCC---chhceEEEE
Confidence 4578999999999999999986 36899999999999999988743 368999999987631 235899999
Q ss_pred cCCC
Q 019550 185 DLAD 188 (339)
Q Consensus 185 D~~d 188 (339)
+++-
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 9874
No 178
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.2e-05 Score=70.46 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=93.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+|+-+|+||||+|.+...+.+.. +..-..+.||+|...+..++-...+ .-++.++..|...-|+. ++.|+++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-----~~~~~~V~tdl~~~l~~--~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-----RVHIDVVRTDLLSGLRN--ESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-----CCccceeehhHHhhhcc--CCccEEE
Confidence 47889999999999998887643 3455679999999999988876665 45688999999888875 8999999
Q ss_pred ecCCC-CCC--------------CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce
Q 019550 184 GDLAD-PVE--------------GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 184 ~D~~d-~~~--------------~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v 248 (339)
.+++- |.. +|.-.+-.+..++.. +...|+|.|++-+... ..+...++.+.+++.--.+
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~-v~~iLSp~Gv~Ylv~~------~~N~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQ-VPDILSPRGVFYLVAL------RANKPKEILKILEKKGYGV 188 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhh-hhhhcCcCceEEeeeh------hhcCHHHHHHHHhhcccce
Confidence 99972 211 111111124567777 7889999999887642 2334567777777654434
Q ss_pred E
Q 019550 249 V 249 (339)
Q Consensus 249 ~ 249 (339)
.
T Consensus 189 ~ 189 (209)
T KOG3191|consen 189 R 189 (209)
T ss_pred e
Confidence 3
No 179
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.26 E-value=7e-06 Score=86.42 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=95.9
Q ss_pred CCeEEEEecchhHHHHHHHhcC-------C-----CCEEEEEEcCHH---HHHHH-----------HHhhhh--------
Q 019550 106 PKTVFIMGGGEGSAAREALKHK-------S-----LEKVVMCDIDQE---VVDFC-----------RRFLTV-------- 151 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~-------~-----~~~v~~VEid~~---vi~~a-----------r~~f~~-------- 151 (339)
.-+||++|.|+|......++.. + .-+++.+|.+|- -+..+ ++....
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4679999999999665555322 2 247889998652 22211 111100
Q ss_pred hccccCCCC--eEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC
Q 019550 152 NQEAFCSKK--LNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT 229 (339)
Q Consensus 152 ~~~~~~~~r--v~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~ 229 (339)
....+++.+ ++++.+|+++.+.....++|+|+.|.|.|.. + ..+++.++|+. ++++++|||++++.+.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-n--p~~W~~~~~~~-l~~~~~~~~~~~t~t~------ 207 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-N--PDMWSPNLFNA-LARLARPGATLATFTS------ 207 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-C--hhhccHHHHHH-HHHHhCCCCEEEEeeh------
Confidence 111233444 4688899999998777789999999998852 3 47999999999 8999999999998642
Q ss_pred chhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEe
Q 019550 230 HKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMAS 268 (339)
Q Consensus 230 ~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as 268 (339)
-..+.+.|..+...|.. .|.+++...++.|+
T Consensus 208 ----a~~vr~~l~~~GF~v~~----~~~~g~kr~~~~~~ 238 (662)
T PRK01747 208 ----AGFVRRGLQEAGFTVRK----VKGFGRKREMLVGE 238 (662)
T ss_pred ----HHHHHHHHHHcCCeeee----cCCCchhhhhhheh
Confidence 23466777776555532 45555444444443
No 180
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.26 E-value=2.5e-06 Score=80.21 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=59.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+||+||||+|.++..++++. .+|+++|+|+++++.+++.+. +++++++.+|+.++- -..-.+|.|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-------~~~v~~i~~D~~~~~-~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-------EDNLTIIEGDALKVD-LSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-------cCceEEEEChhhcCC-HHHcCcceEE
Confidence 356789999999999999999864 389999999999999998652 268999999987641 1111158999
Q ss_pred ecCC
Q 019550 184 GDLA 187 (339)
Q Consensus 184 ~D~~ 187 (339)
.+++
T Consensus 111 ~NlP 114 (272)
T PRK00274 111 ANLP 114 (272)
T ss_pred EeCC
Confidence 9986
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.24 E-value=2.8e-06 Score=75.04 Aligned_cols=111 Identities=22% Similarity=0.211 Sum_probs=75.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCE---------EEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEK---------VVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~---------v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~ 175 (339)
+...+||--||+|+++.|.+....... +.++|+|+++++.|++++...+. ...+.+...|+.+.- ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~---~~~i~~~~~D~~~l~-~~ 103 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV---EDYIDFIQWDARELP-LP 103 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT----CGGEEEEE--GGGGG-GT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc---CCceEEEecchhhcc-cc
Confidence 456899999999999999876544433 88999999999999999875432 456899999987653 34
Q ss_pred CCceeEEEecCCCCCCCCc---cccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 176 NEKFDVIFGDLADPVEGGP---CYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p---~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.+.+|+|++|+|-....+. ...|| ..|++. +++.|++..++++.
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly-~~~~~~-~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLY-RQFLRE-LKRVLKPRAVFLTT 150 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHH-HHHHHH-HHCHSTTCEEEEEE
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHH-HHHHHH-HHHHCCCCEEEEEE
Confidence 5789999999986542121 12333 457777 78899995555554
No 182
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.22 E-value=3.7e-06 Score=75.64 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+.=|||||||+|..+..+.. .+ -..++|||+|.|++.|.+. ... -.++.+|.=+-+.-.+++||-+|+-
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~-~G-h~wiGvDiSpsML~~a~~~-e~e--------gdlil~DMG~GlpfrpGtFDg~ISI 119 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD-SG-HQWIGVDISPSMLEQAVER-ELE--------GDLILCDMGEGLPFRPGTFDGVISI 119 (270)
T ss_pred CcEEEEeccCCCcchheecc-CC-ceEEeecCCHHHHHHHHHh-hhh--------cCeeeeecCCCCCCCCCccceEEEe
Confidence 55699999999999986654 43 6789999999999999862 111 2355566545455567899987765
Q ss_pred CC-------CCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 186 LA-------DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 186 ~~-------d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.. ++....|...|. .||.. +...|++|+..|+|.-
T Consensus 120 SAvQWLcnA~~s~~~P~~Rl~--~FF~t-Ly~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 120 SAVQWLCNADKSLHVPKKRLL--RFFGT-LYSCLKRGARAVLQFY 161 (270)
T ss_pred eeeeeecccCccccChHHHHH--HHhhh-hhhhhccCceeEEEec
Confidence 43 222123433443 79998 7999999999999964
No 183
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.22 E-value=5.8e-06 Score=79.39 Aligned_cols=122 Identities=20% Similarity=0.154 Sum_probs=89.9
Q ss_pred hHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc-cH
Q 019550 90 IYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN-DA 168 (339)
Q Consensus 90 ~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~-D~ 168 (339)
.+.+.|+.++.. .....|||=-||+|+++.++.. .+ .++.+.|||.++++-|+.|+...+ -+...++.. |+
T Consensus 184 ~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl-~G-~~viG~Did~~mv~gak~Nl~~y~----i~~~~~~~~~Da 255 (347)
T COG1041 184 RLARAMVNLARV--KRGELVLDPFCGTGGILIEAGL-MG-ARVIGSDIDERMVRGAKINLEYYG----IEDYPVLKVLDA 255 (347)
T ss_pred HHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhh-cC-ceEeecchHHHHHhhhhhhhhhhC----cCceeEEEeccc
Confidence 456777766543 3456899999999999999876 44 789999999999999999998653 245655555 86
Q ss_pred HHHHHhcCCceeEEEecCCCCCCCC----ccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 169 KAELEKRNEKFDVIFGDLADPVEGG----PCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 169 ~~~l~~~~~~yDvIi~D~~d~~~~~----p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.. +.-.+.++|.|++|+|-..... ....|| .++++. +.+.|++||.+++.+
T Consensus 256 ~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly-~~~le~-~~evLk~gG~~vf~~ 310 (347)
T COG1041 256 TN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELY-EEALES-ASEVLKPGGRIVFAA 310 (347)
T ss_pred cc-CCCCCCccceEEecCCCCcccccccccHHHHH-HHHHHH-HHHHhhcCcEEEEec
Confidence 53 4433446999999998544211 112333 578888 899999999998864
No 184
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.20 E-value=4.2e-06 Score=74.48 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=63.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH-hcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE-KRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~yDvIi 183 (339)
...+||+||||+|.++..+++.. ..+++++|+++++++.+++ .+++++.+|+.+.+. ..+++||+|+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-----------~~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-----------RGVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-----------cCCeEEEEEhhhcccccCCCCcCEEE
Confidence 45789999999999998887654 4578999999999998864 246788888766443 2346899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLN 213 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~ 213 (339)
+...-.. -+ ....+++. +.+.++
T Consensus 81 ~~~~l~~--~~----d~~~~l~e-~~r~~~ 103 (194)
T TIGR02081 81 LSQTLQA--TR----NPEEILDE-MLRVGR 103 (194)
T ss_pred EhhHhHc--Cc----CHHHHHHH-HHHhCC
Confidence 9864221 00 13466676 555554
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=9.3e-06 Score=75.47 Aligned_cols=97 Identities=15% Similarity=0.217 Sum_probs=72.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCC--ceeEEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNE--KFDVIF 183 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~--~yDvIi 183 (339)
...||+||.|.|.+...+++. ..+|++||||+.+++..++.+.. .++++++.+|+..+= ... +++.|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------~~n~~vi~~DaLk~d--~~~l~~~~~vV 100 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP------YDNLTVINGDALKFD--FPSLAQPYKVV 100 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc------ccceEEEeCchhcCc--chhhcCCCEEE
Confidence 578999999999999999984 46799999999999999998763 478999999997651 122 689999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCC-CcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLND-NGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~-gGilv~~ 221 (339)
.+.|-.. .|+=.+.. +...... ..++++|
T Consensus 101 aNlPY~I--------sspii~kl-l~~~~~~~~~v~M~Q 130 (259)
T COG0030 101 ANLPYNI--------SSPILFKL-LEEKFIIQDMVLMVQ 130 (259)
T ss_pred EcCCCcc--------cHHHHHHH-HhccCccceEEEEeH
Confidence 9998543 12223333 4444443 5566666
No 186
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=9.3e-06 Score=75.42 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=59.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCcee---
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFD--- 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yD--- 180 (339)
.+..+||+||||.|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.+.-. ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------CCcEEEEECchhcCCh---hHcCCcc
Confidence 356789999999999999999864 4699999999999999987643 4789999999865321 2466
Q ss_pred EEEecCC
Q 019550 181 VIFGDLA 187 (339)
Q Consensus 181 vIi~D~~ 187 (339)
+|+.+++
T Consensus 97 ~vvsNlP 103 (253)
T TIGR00755 97 KVVSNLP 103 (253)
T ss_pred eEEEcCC
Confidence 8888876
No 187
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.18 E-value=7.7e-06 Score=74.80 Aligned_cols=110 Identities=14% Similarity=0.090 Sum_probs=75.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh--------ccccCCCCeEEEEccHHHHHH--
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN--------QEAFCSKKLNLVVNDAKAELE-- 173 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~--------~~~~~~~rv~v~~~D~~~~l~-- 173 (339)
++..+||+.|||.|.-+.+++++ + -+|++||+++..++.+.+-.... ...+...+++++++|.+++=.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~-G-~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK-G-VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC-C-CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999984 4 57999999999999876532110 011234689999999987521
Q ss_pred hcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 174 KRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 174 ~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
...++||+|+--.+--. -|+ . ....+.+. +.+.|+|||.+++
T Consensus 120 ~~~~~fD~VyDra~~~A--lpp-~-~R~~Y~~~-l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIA--LPN-D-LRTNYAKM-MLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhc--CCH-H-HHHHHHHH-HHHHhCCCcEEEE
Confidence 12357999765544211 111 1 24577787 8999999997654
No 188
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.12 E-value=1.6e-05 Score=69.67 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=64.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEcc---HHHHHHhcCCcee
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVND---AKAELEKRNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D---~~~~l~~~~~~yD 180 (339)
.++++||+||+|.|..+..+++..+..+|++-|.++ +++.++.+...+.. ...+++++..-| ....-...+.+||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~-~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS-LLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc-cccccccCcEEEecCcccccccccccCC
Confidence 457899999999999999988865678999999999 99999999887642 124666666543 2111111246899
Q ss_pred EEEec-CC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGD-LA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D-~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+.. .. ++ . .-..+.+. +++.|+++|.+++.
T Consensus 122 ~IlasDv~Y~~-------~-~~~~L~~t-l~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 122 VILASDVLYDE-------E-LFEPLVRT-LKRLLKPNGKVLLA 155 (173)
T ss_dssp EEEEES--S-G-------G-GHHHHHHH-HHHHBTT-TTEEEE
T ss_pred EEEEecccchH-------H-HHHHHHHH-HHHHhCCCCEEEEE
Confidence 99874 32 21 1 23577777 78999999975544
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.11 E-value=8e-05 Score=66.11 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=76.1
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+++|||.|+|-=+.-++-..|..+++.||...+=+...+.-....+ -++++++++.+.+ .....+||+|++-+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~----L~nv~v~~~R~E~--~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG----LSNVEVINGRAEE--PEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----SSEEEEES-HHH--TTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC----CCCEEEEEeeecc--cccCCCccEEEeehh
Confidence 8999999999877666655688899999999988777666554332 3679999999877 445689999999998
Q ss_pred CCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 188 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 188 d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.+. ..+++. +...|++||.+++.-|.
T Consensus 125 ~~l----------~~l~~~-~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 125 APL----------DKLLEL-ARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp SSH----------HHHHHH-HGGGEEEEEEEEEEESS
T ss_pred cCH----------HHHHHH-HHHhcCCCCEEEEEcCC
Confidence 542 367777 78999999999887653
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.10 E-value=1.5e-05 Score=75.68 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=64.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCC---ceeE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNE---KFDV 181 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~---~yDv 181 (339)
...++|++||.|+.+..+++..+ ..+|+++|+||++++.|++.+.. ..|++++++|..++.....+ ++|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~------~~ri~~i~~~f~~l~~~l~~~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP------FGRFTLVHGNFSNLKEVLAEGLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc------CCcEEEEeCCHHHHHHHHHcCCCccCE
Confidence 45899999999999999998754 57999999999999999987632 26899999999988654433 7999
Q ss_pred EEecCC
Q 019550 182 IFGDLA 187 (339)
Q Consensus 182 Ii~D~~ 187 (339)
|+.|+-
T Consensus 94 Il~DLG 99 (296)
T PRK00050 94 ILLDLG 99 (296)
T ss_pred EEECCC
Confidence 999994
No 191
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.10 E-value=5.4e-06 Score=75.51 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=74.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHH-hhhhh-------ccccCCCCeEEEEccHHHHHHhc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRR-FLTVN-------QEAFCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~-~f~~~-------~~~~~~~rv~v~~~D~~~~l~~~ 175 (339)
+.+.+||+.|||.|.-+.+++++ + -+|++||+++..++.+.+ +...+ .......+++++++|.+++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~-G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ-G-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT-T-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC-C-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 44569999999999999999984 4 689999999999998843 32111 01134678999999998753323
Q ss_pred CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcE
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGI 217 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGi 217 (339)
.++||+|+=-.+--. -|+ -....+.+. +++.|+|||.
T Consensus 114 ~g~fD~iyDr~~l~A--lpp--~~R~~Ya~~-l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCA--LPP--EMRERYAQQ-LASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEECSSTTT--S-G--GGHHHHHHH-HHHCEEEEEE
T ss_pred cCCceEEEEeccccc--CCH--HHHHHHHHH-HHHHhCCCCc
Confidence 357999986654211 121 124577777 8999999998
No 192
>PRK10742 putative methyltransferase; Provisional
Probab=98.08 E-value=2.6e-05 Score=71.92 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=67.4
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-c-cccCC---CCeEEEEccHHHHHHhcCCceeEE
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-Q-EAFCS---KKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~-~~~~~---~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
+|||+-+|.|..+.+++.. + ++|++||-+|.+..+.++.+... . ..... .|++++.+|+.+||+.....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~-G-~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-G-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999999874 4 56999999999999999988642 1 11111 579999999999998877789999
Q ss_pred EecCCCCC
Q 019550 183 FGDLADPV 190 (339)
Q Consensus 183 i~D~~d~~ 190 (339)
++|+.-|.
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 99998664
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.06 E-value=8.3e-06 Score=78.05 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.+.|||+|||+|.+...+++ .+..+|.+||-+.-+ +.|++-+..++. +..++++.+...+. .-+.++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~ak-AGA~~V~aVe~S~ia-~~a~~iv~~N~~---~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAK-AGARKVYAVEASSIA-DFARKIVKDNGL---EDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHH-hCcceEEEEechHHH-HHHHHHHHhcCc---cceEEEeecceEEE-ecCccceeEEee
Confidence 468999999999999999888 578999999997655 889888776643 45788888886554 222489999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
..-.-.- .-..++..-.|.. .+.|+|||++.
T Consensus 134 EWMGy~L--l~EsMldsVl~AR--dkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 EWMGYFL--LYESMLDSVLYAR--DKWLKEGGLIY 164 (346)
T ss_pred hhhhHHH--HHhhhhhhhhhhh--hhccCCCceEc
Confidence 8752110 0011111122222 47999999985
No 194
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.06 E-value=3.4e-06 Score=67.43 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=46.1
Q ss_pred EEEecchhHHHHHHHhcCCC---CEEEEEEcCHH---HHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC-CceeEE
Q 019550 110 FIMGGGEGSAAREALKHKSL---EKVVMCDIDQE---VVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN-EKFDVI 182 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~~---~~v~~VEid~~---vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~-~~yDvI 182 (339)
|+||+..|..+..+++.... .++++||..+. .-+..++ ... ..+++++.+|..+.+.... +++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~~~---~~~~~~~~g~s~~~l~~~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----AGL---SDRVEFIQGDSPDFLPSLPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS----------------GGG----BTEEEEES-THHHHHHHHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----cCC---CCeEEEEEcCcHHHHHHcCCCCEEEE
Confidence 67998899988887764322 37999999995 3333333 111 3679999999999987765 899999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++|..... + .....++. +..+|+|||++++.
T Consensus 74 ~iDg~H~~---~----~~~~dl~~-~~~~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGDHSY---E----AVLRDLEN-ALPRLAPGGVIVFD 104 (106)
T ss_dssp EEES---H---H----HHHHHHHH-HGGGEEEEEEEEEE
T ss_pred EECCCCCH---H----HHHHHHHH-HHHHcCCCeEEEEe
Confidence 99986321 1 23466777 78999999999874
No 195
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.02 E-value=7.7e-06 Score=71.85 Aligned_cols=137 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred HHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH---
Q 019550 93 ECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA--- 168 (339)
Q Consensus 93 e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~--- 168 (339)
|++....++...++.+|||||++.|+....++++. +..+|.+||+.+. .- .+.+..+.+|.
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~---------~~~~~~i~~d~~~~ 75 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DP---------LQNVSFIQGDITNP 75 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS----------TTEEBTTGGGEEE
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc------cc---------ccceeeeecccchh
Confidence 44443443322256899999999999999988865 3689999999877 00 12233333332
Q ss_pred ------HHHHHhcCCceeEEEecCCCCCCCCc------cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHH
Q 019550 169 ------KAELEKRNEKFDVIFGDLADPVEGGP------CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSS 236 (339)
Q Consensus 169 ------~~~l~~~~~~yDvIi~D~~d~~~~~p------~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~ 236 (339)
++.+....+++|+|++|........+ ...|. ...+.. +.+.|++||.+++-. +..... ..
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~-~~~l~~-a~~~L~~gG~~v~K~-----~~~~~~-~~ 147 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLI-LSQLLL-ALELLKPGGTFVIKV-----FKGPEI-EE 147 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHH-HHHHHH-HHHHHCTTEEEEEEE-----SSSTTS-HH
T ss_pred hHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHH-HHHHHH-HHhhhcCCCEEEEEe-----ccCccH-HH
Confidence 22222223689999999953221110 01111 122333 456899999888764 222223 37
Q ss_pred HHHHHHhHCCceEEEE
Q 019550 237 IYNTIKQVFKHVVAYT 252 (339)
Q Consensus 237 i~~~l~~~F~~v~~~~ 252 (339)
+...++..|..|..+.
T Consensus 148 ~~~~l~~~F~~v~~~K 163 (181)
T PF01728_consen 148 LIYLLKRCFSKVKIVK 163 (181)
T ss_dssp HHHHHHHHHHHEEEEE
T ss_pred HHHHHHhCCeEEEEEE
Confidence 7788888888887664
No 196
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.97 E-value=4.4e-05 Score=71.72 Aligned_cols=108 Identities=21% Similarity=0.302 Sum_probs=64.6
Q ss_pred CCCeEEEEecchhHH-HHHHHh-cCCCCEEEEEEcCHHHHHHHHHhhh-hhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGSA-AREALK-HKSLEKVVMCDIDQEVVDFCRRFLT-VNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~-~~~l~~-~~~~~~v~~VEid~~vi~~ar~~f~-~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.|++|+.||+|.-=+ +..+++ |.+...|+.+|+||+.++.+++-.. ..+. ..+++++.+|+.+.-.. -..||+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L---~~~m~f~~~d~~~~~~d-l~~~Dv 195 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL---SKRMSFITADVLDVTYD-LKEYDV 195 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH----SSEEEEES-GGGG-GG-----SE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc---cCCeEEEecchhccccc-cccCCE
Confidence 478999999995443 344443 3446789999999999999998876 2222 58899999998764322 268999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++.+.-+....+ ..+.++. +.+.++||.++++-.
T Consensus 196 V~lAalVg~~~e~-----K~~Il~~-l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 196 VFLAALVGMDAEP-----KEEILEH-LAKHMAPGARLVVRS 230 (276)
T ss_dssp EEE-TT-S----S-----HHHHHHH-HHHHS-TTSEEEEEE
T ss_pred EEEhhhcccccch-----HHHHHHH-HHhhCCCCcEEEEec
Confidence 9999874321122 5688999 799999999998864
No 197
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.97 E-value=1.7e-05 Score=77.42 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh----------
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK---------- 174 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~---------- 174 (339)
.+.+|||+-||.|.++..+++. ..+|++||+++.+++.|+++...++ -.+++++.+++.++...
T Consensus 196 ~~~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~----i~n~~f~~~~~~~~~~~~~~~r~~~~~ 269 (352)
T PF05958_consen 196 SKGDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG----IDNVEFIRGDAEDFAKALAKAREFNRL 269 (352)
T ss_dssp -TTEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------SEEEEE--SHHCCCHHCCS-GGTTG
T ss_pred CCCcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC----CCcceEEEeeccchhHHHHhhHHHHhh
Confidence 3458999999999999998874 5799999999999999999998875 36899998887554221
Q ss_pred -----cCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 175 -----RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 175 -----~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
...++|+|++|||.. |. ...+.+. +.+ + .=++-+.+. +..+.+=++.|.+
T Consensus 270 ~~~~~~~~~~d~vilDPPR~---G~-----~~~~~~~-~~~-~--~~ivYvSCn-------P~tlaRDl~~L~~ 324 (352)
T PF05958_consen 270 KGIDLKSFKFDAVILDPPRA---GL-----DEKVIEL-IKK-L--KRIVYVSCN-------PATLARDLKILKE 324 (352)
T ss_dssp GGS-GGCTTESEEEE---TT----S-----CHHHHHH-HHH-S--SEEEEEES--------HHHHHHHHHHHHC
T ss_pred hhhhhhhcCCCEEEEcCCCC---Cc-----hHHHHHH-Hhc-C--CeEEEEECC-------HHHHHHHHHHHhh
Confidence 123689999999854 22 3456665 443 3 335445432 2334444455655
No 198
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.96 E-value=6.9e-05 Score=64.83 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH---HHhc-CCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE---LEKR-NEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~---l~~~-~~~y 179 (339)
....||++|.|+|.+.+.++++. ..++++++|.++..+....+.+ |.++++.+|+.+- +... ...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---------p~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---------PGVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---------CCccccccchhhHHHHHhhcCCCee
Confidence 45689999999999999999863 2478999999999999888775 4567999998753 3332 3579
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|.||+..+--. -|. --+.+.++. +..+|..||.++.-
T Consensus 119 D~viS~lPll~--~P~--~~~iaile~-~~~rl~~gg~lvqf 155 (194)
T COG3963 119 DSVISGLPLLN--FPM--HRRIAILES-LLYRLPAGGPLVQF 155 (194)
T ss_pred eeEEecccccc--CcH--HHHHHHHHH-HHHhcCCCCeEEEE
Confidence 99999987432 121 125578888 78899999988754
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.96 E-value=1.1e-05 Score=72.93 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=77.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCe--EEEEccHHHHHHhcCCceeEEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKL--NLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv--~v~~~D~~~~l~~~~~~yDvIi 183 (339)
-..+++||||-|.+.+.+... ++.+++.+|-+..|++.|++- +||.+ ....+| .++|.-.+.++|+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~--------qdp~i~~~~~v~D-EE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA--------QDPSIETSYFVGD-EEFLDFKENSVDLII 142 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc--------CCCceEEEEEecc-hhcccccccchhhhh
Confidence 456999999999999998884 689999999999999999875 24554 456677 567766678899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+...-+|. +.| +..+.. |+..|||+|.++..
T Consensus 143 sSlslHW~----NdL--Pg~m~~-ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 143 SSLSLHWT----NDL--PGSMIQ-CKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhh----ccC--chHHHH-HHHhcCCCccchhH
Confidence 99986662 122 245666 79999999999865
No 200
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.94 E-value=6.2e-05 Score=69.65 Aligned_cols=93 Identities=17% Similarity=0.279 Sum_probs=66.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
...++||||+|+|.+...++.++ .+|.+-|+++.|....++. ..+++-.| + ....+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~k-----------g~~vl~~~--~-w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKK-----------GFTVLDID--D-WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhC-----------CCeEEehh--h-hhccCCceEEEee
Confidence 45789999999999999998765 6799999999997655442 34444333 2 3344578999977
Q ss_pred -cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 -DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 -D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.-|.-. .| ...++. +++.|+|+|++++-
T Consensus 158 LNvLDRc~-~P------~~LL~~-i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD-RP------LTLLRD-IRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC-CH------HHHHHH-HHHHhCCCCEEEEE
Confidence 3334321 23 367888 79999999998764
No 201
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.93 E-value=4e-05 Score=78.60 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=58.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC--------CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH----
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS--------LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL---- 172 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l---- 172 (339)
...+|||.|||+|++...++++.+ ..+++++|||+.++..|+..+.... ....++..+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----LLEINVINFNSLSYVLLNI 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC----CCCceeeeccccccccccc
Confidence 456899999999999988876432 2578999999999999999875432 234566666654321
Q ss_pred HhcCCceeEEEecCCC
Q 019550 173 EKRNEKFDVIFGDLAD 188 (339)
Q Consensus 173 ~~~~~~yDvIi~D~~d 188 (339)
....++||+||.+||-
T Consensus 107 ~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 107 ESYLDLFDIVITNPPY 122 (524)
T ss_pred ccccCcccEEEeCCCc
Confidence 1123589999999983
No 202
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.93 E-value=3.2e-05 Score=76.05 Aligned_cols=104 Identities=27% Similarity=0.355 Sum_probs=78.7
Q ss_pred CCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+-+|||.=+|+|.=+...++. .+..+|++-|+||+.+++.++++..++. ++.++++...|+...+....+.||+|-+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~--~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL--EDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT---SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc--cCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999888889877666665 6678999999999999999999988754 2338999999999988766789999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++-. | ..|+.. +-+.++.||+|++.+
T Consensus 128 DPfGS----p------~pflds-A~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFGS----P------APFLDS-ALQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS------------HHHHHH-HHHHEEEEEEEEEEE
T ss_pred CCCCC----c------cHhHHH-HHHHhhcCCEEEEec
Confidence 99921 2 378888 788999999998763
No 203
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.92 E-value=1.2e-05 Score=76.60 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=81.1
Q ss_pred CCCeEEEEecchhHHHHHHHhc-------CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-C
Q 019550 105 NPKTVFIMGGGEGSAAREALKH-------KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-N 176 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~-------~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~ 176 (339)
+..+|||-+||+|+++.++.++ ....++.++|+|+.++.+|+-++..... +.....+..+|....-... .
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~--~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI--DNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH--HCBGCEEEES-TTTSHSCTST
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc--ccccccccccccccccccccc
Confidence 3457999999999999888764 2467899999999999999988754422 1334568899875432222 4
Q ss_pred CceeEEEecCCCCCC--CCc-------------cccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHH
Q 019550 177 EKFDVIFGDLADPVE--GGP-------------CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTI 241 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~--~~p-------------~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l 241 (339)
++||+|+++||-... ... ...-..-.|++. +-+.|++||.+++-.... ..........+.+.|
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~-~l~~Lk~~G~~~~Ilp~~-~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEH-ALSLLKPGGRAAIILPNG-FLFSSSSEKKIRKYL 201 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHH-HHHTEEEEEEEEEEEEHH-HHHGSTHHHHHHHHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHH-HHhhcccccceeEEecch-hhhccchHHHHHHHH
Confidence 689999999983221 000 000011257888 678999999765432111 111122234556666
Q ss_pred HhHCC
Q 019550 242 KQVFK 246 (339)
Q Consensus 242 ~~~F~ 246 (339)
.+.+.
T Consensus 202 l~~~~ 206 (311)
T PF02384_consen 202 LENGY 206 (311)
T ss_dssp HHHEE
T ss_pred Hhhch
Confidence 65544
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.85 E-value=6.3e-05 Score=79.78 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=63.4
Q ss_pred CCeEEEEecchhHHHHHHHhc------------C------------------------------CCCEEEEEEcCHHHHH
Q 019550 106 PKTVFIMGGGEGSAAREALKH------------K------------------------------SLEKVVMCDIDQEVVD 143 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~------------~------------------------------~~~~v~~VEid~~vi~ 143 (339)
...++|-+||+|+++.|++.. + ...+++++|+|+++++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 467999999999999998752 0 1136999999999999
Q ss_pred HHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEecCCCC
Q 019550 144 FCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDLADP 189 (339)
Q Consensus 144 ~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~d~ 189 (339)
.|+++....+. ..++++..+|+.+.-... .++||+|++|+|-.
T Consensus 271 ~A~~N~~~~g~---~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 271 AARKNARRAGV---AELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHcCC---CcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 99999876543 457999999988753222 25799999999843
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00035 Score=68.22 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=98.5
Q ss_pred hcccCCC-CCeEEEEecchhHHHHHHHhcCCC--CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc
Q 019550 99 PLLCHQN-PKTVFIMGGGEGSAAREALKHKSL--EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 99 ~l~~~~~-p~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~ 175 (339)
+.+..+. ..+|||++.+-|+=...++..... ..|+++|+|+.=++..++++...+ -.++.++..|++.+....
T Consensus 149 a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG----~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 149 ALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG----VRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC----CCceEEEecccccccccc
Confidence 3344444 478999999999877777775443 456999999999999999987553 355889999988765443
Q ss_pred C--CceeEEEecCCCCCCC----Ccc--c----------cCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHH
Q 019550 176 N--EKFDVIFGDLADPVEG----GPC--Y----------QLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSI 237 (339)
Q Consensus 176 ~--~~yDvIi~D~~d~~~~----~p~--~----------~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i 237 (339)
. ++||.|++|++-...+ .|. . .-+..+++.. +.+.|+|||+|+-.+++. ..+....+
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~-a~~~lk~GG~LVYSTCS~----~~eENE~v 299 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAA-ALKLLKPGGVLVYSTCSL----TPEENEEV 299 (355)
T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEEccCC----chhcCHHH
Confidence 3 3699999999832210 111 0 0113567777 678999999998776543 34455667
Q ss_pred HHHHHhHCCceEE
Q 019550 238 YNTIKQVFKHVVA 250 (339)
Q Consensus 238 ~~~l~~~F~~v~~ 250 (339)
.+.+-+..+.+..
T Consensus 300 V~~~L~~~~~~~~ 312 (355)
T COG0144 300 VERFLERHPDFEL 312 (355)
T ss_pred HHHHHHhCCCcee
Confidence 7777666666543
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=2.4e-05 Score=66.10 Aligned_cols=91 Identities=18% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+.+++++||||.|.+...+. .++...|.++||||+.+++++++..... -+..+++.|..+-.. ....||..++
T Consensus 48 Egkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfE-----vqidlLqcdildle~-~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFE-----VQIDLLQCDILDLEL-KGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhh-----hhhheeeeeccchhc-cCCeEeeEEe
Confidence 57899999999999986544 4778899999999999999999976432 233566666544322 2478999999
Q ss_pred cCCCCCCCCccccCCcHHHHHH
Q 019550 185 DLADPVEGGPCYQLYTKSFYER 206 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~ 206 (339)
|++-... ..-...+|.+.
T Consensus 121 NppFGTk----~~~aDm~fv~~ 138 (185)
T KOG3420|consen 121 NPPFGTK----KKGADMEFVSA 138 (185)
T ss_pred cCCCCcc----cccccHHHHHH
Confidence 9985431 11235577665
No 207
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.83 E-value=0.00029 Score=64.59 Aligned_cols=98 Identities=24% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi 183 (339)
..++||.||=.+.......+... .++|++||||+.+++..++.....+ -.++.+..|.++-|... .++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~g-----l~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEG-----LPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT-------EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcC-----CceEEEEecccccCCHHHhcCCCEEE
Confidence 47899999998888777666554 4799999999999999988876542 34999999999988653 58999999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCc
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNG 216 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gG 216 (339)
.||+... .+. .-|... .-+.|+..|
T Consensus 118 TDPPyT~---~G~----~LFlsR-gi~~Lk~~g 142 (243)
T PF01861_consen 118 TDPPYTP---EGL----KLFLSR-GIEALKGEG 142 (243)
T ss_dssp E---SSH---HHH----HHHHHH-HHHTB-STT
T ss_pred eCCCCCH---HHH----HHHHHH-HHHHhCCCC
Confidence 9998421 111 134555 456788777
No 208
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.82 E-value=0.00032 Score=63.62 Aligned_cols=144 Identities=16% Similarity=0.240 Sum_probs=92.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHH----HHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEV----VDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RN 176 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~v----i~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~ 176 (339)
.+..+||-||.++|++...+...-+ ...|.+||.+|.. +.+|++ .+++--+.+|++.--+- .-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----------R~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----------RPNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----------STTEEEEES-TTSGGGGTTTS
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----------CCceeeeeccCCChHHhhccc
Confidence 3457999999999999999987543 5789999999954 445554 37888899999854322 13
Q ss_pred CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec--CCCCc-cCchhhHHHHHHHHHhH-CCceEEEE
Q 019550 177 EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA--GPAGI-FTHKEVFSSIYNTIKQV-FKHVVAYT 252 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~--~~~~~-~~~~~~~~~i~~~l~~~-F~~v~~~~ 252 (339)
+..|+|+.|..-|. . .+-+... ++.-||+||.+++.. .+-.. ......+....+.|++. |.-...
T Consensus 142 ~~VDvI~~DVaQp~---Q-----a~I~~~N-a~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~-- 210 (229)
T PF01269_consen 142 EMVDVIFQDVAQPD---Q-----ARIAALN-ARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQ-- 210 (229)
T ss_dssp --EEEEEEE-SSTT---H-----HHHHHHH-HHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEE--
T ss_pred ccccEEEecCCChH---H-----HHHHHHH-HHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheE--
Confidence 68999999998664 1 3345566 677999999776542 11100 12345788888899874 443332
Q ss_pred EeecccCCceeEEEEe
Q 019550 253 AHVPSFADTWGWVMAS 268 (339)
Q Consensus 253 ~~iP~~~~~~~~~~as 268 (339)
+....|......++|.
T Consensus 211 i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 211 ITLEPYERDHAMVVGR 226 (229)
T ss_dssp EE-TTTSTTEEEEEEE
T ss_pred eccCCCCCCcEEEEEE
Confidence 3344466556666664
No 209
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.81 E-value=0.00014 Score=69.27 Aligned_cols=102 Identities=21% Similarity=0.324 Sum_probs=76.3
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
.+-||++|||+|.+...++. .++.+|.+||.+ +|.+.|++-..-+.. ..|+.++.|-..+ + ..+++.|+||+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaq-AGA~~vYAvEAS-~MAqyA~~Lv~~N~~---~~rItVI~GKiEd-i-eLPEk~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQ-AGAKKVYAVEAS-EMAQYARKLVASNNL---ADRITVIPGKIED-I-ELPEKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHH-hCcceEEEEehh-HHHHHHHHHHhcCCc---cceEEEccCcccc-c-cCchhccEEEec
Confidence 56799999999999987766 688999999985 577889888765532 5789999887543 2 346899999998
Q ss_pred CCCCCCCCccccCCcH---HHHHHHHccccCCCcEEEEec
Q 019550 186 LADPVEGGPCYQLYTK---SFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~---ef~~~~~~~~L~~gGilv~~~ 222 (339)
+-.- .|+.+ |-|-. +++.|+|.|.+.-..
T Consensus 251 PMG~-------mL~NERMLEsYl~-Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGY-------MLVNERMLESYLH-ARKWLKPNGKMFPTV 282 (517)
T ss_pred cchh-------hhhhHHHHHHHHH-HHhhcCCCCcccCcc
Confidence 7521 23332 44555 689999999886443
No 210
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.80 E-value=3e-05 Score=74.94 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh-hcccc-----CCCCeEEEEccHHHH-HHh--
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV-NQEAF-----CSKKLNLVVNDAKAE-LEK-- 174 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~-~~~~~-----~~~rv~v~~~D~~~~-l~~-- 174 (339)
+..+|||||||-|+ +..+... ....++++||++..|+-|++.... ....- -+-...++.+|...- |..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56789999999555 6666544 578999999999999999987721 11000 012356788887532 222
Q ss_pred --cCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 175 --RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 175 --~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
...+||+|-+-..-+.... ..-..+.+++. +.+.|+|||+++..+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~N-vs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFE--SEEKARQFLKN-VSSLLKPGGYFIGTT 186 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHH-HHHTEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcC--CHHHHHHHHHH-HHHhcCCCCEEEEEe
Confidence 1258999988764222100 11123468999 799999999998764
No 211
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00019 Score=64.55 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred hhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEcc
Q 019550 88 EFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVND 167 (339)
Q Consensus 88 ~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D 167 (339)
|..|.++++.. ++ .+..+||.+|.|-|.+...+-+.+|. +-+.+|..|.|...-|++-... ..+|.++.+-
T Consensus 87 EtpiMha~A~a-i~--tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e-----k~nViil~g~ 157 (271)
T KOG1709|consen 87 ETPIMHALAEA-IS--TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE-----KENVIILEGR 157 (271)
T ss_pred hhHHHHHHHHH-Hh--hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc-----ccceEEEecc
Confidence 33455554432 22 56889999999999999988776664 5668999999999999885543 4667776654
Q ss_pred HHHHHHhc-CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 168 AKAELEKR-NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 168 ~~~~l~~~-~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
=.+.+... .+.||-|+-|.+.+.. --+.+|++. +-+.|||+|++..-
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e~y------Edl~~~hqh-~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSELY------EDLRHFHQH-VVRLLKPEGVFSYF 205 (271)
T ss_pred hHhhhccccccCcceeEeechhhHH------HHHHHHHHH-HhhhcCCCceEEEe
Confidence 33334332 4669999999985431 125699998 89999999999853
No 212
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00014 Score=70.27 Aligned_cols=102 Identities=24% Similarity=0.324 Sum_probs=85.0
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+++|||-=+|+|.=+...+..-+..+|++-||+|+.+++.++++..+. .....++..|+-.++.+....||+|-+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~----~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS----GEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC----cccceeecchHHHHHHhcCCCccEEecC
Confidence 789999999999988777766666689999999999999999998873 3456666699999998877899999999
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
++-. | .+|++. +.+..+.+|++++..
T Consensus 129 PFGS----P------aPFlDa-A~~s~~~~G~l~vTA 154 (380)
T COG1867 129 PFGS----P------APFLDA-ALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC----C------chHHHH-HHHHhhcCCEEEEEe
Confidence 9932 2 278887 778899999998764
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.77 E-value=0.00018 Score=66.01 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=39.7
Q ss_pred hhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHH
Q 019550 89 FIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDF 144 (339)
Q Consensus 89 ~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ 144 (339)
+...+++.+... ..+.+.|||+|||+|.++..+++. +..+|++||+++.++..
T Consensus 61 ~kL~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 61 EKLKEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 334455554432 135678999999999999999985 67899999999977654
No 214
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.71 E-value=7.6e-05 Score=64.52 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=57.1
Q ss_pred EEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHcccc
Q 019550 133 VMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKL 212 (339)
Q Consensus 133 ~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L 212 (339)
++||+++.|++.|++....... ...++++++.+|+.+ +....++||+|++...-... + -..+++++ ++++|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~-~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~--~----d~~~~l~e-i~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR-SCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNV--V----DRLRAMKE-MYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc-cCCCceEEEEechhh-CCCCCCCeeEEEecchhhcC--C----CHHHHHHH-HHHHc
Confidence 4899999999999877543211 013579999999875 34445689999986532210 1 13588999 89999
Q ss_pred CCCcEEEEe
Q 019550 213 NDNGIFVTQ 221 (339)
Q Consensus 213 ~~gGilv~~ 221 (339)
+|||.+++.
T Consensus 72 kpGG~l~i~ 80 (160)
T PLN02232 72 KPGSRVSIL 80 (160)
T ss_pred CcCeEEEEE
Confidence 999998765
No 215
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.68 E-value=0.00016 Score=68.59 Aligned_cols=115 Identities=15% Similarity=0.180 Sum_probs=75.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccC--CCCeEEEEccHHHHH-Hh----cC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFC--SKKLNLVVNDAKAEL-EK----RN 176 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~--~~rv~v~~~D~~~~l-~~----~~ 176 (339)
+....+|+||||-|+-++-..+ .++..++++||....|+-|++.......-++ .=.+.++.+|...-. .. ..
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~k-AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDK-AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhh-hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4567799999998887766555 4678999999999999999987653211000 013678888876432 11 12
Q ss_pred CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 177 EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.+||+|-+--.-+..... .--.+-+++. +.++|+|||+++...
T Consensus 195 p~fDivScQF~~HYaFet--ee~ar~~l~N-va~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFET--EESARIALRN-VAKCLKPGGVFIGTI 237 (389)
T ss_pred CCcceeeeeeeEeeeecc--HHHHHHHHHH-HHhhcCCCcEEEEec
Confidence 449998776542221000 0012457788 789999999998653
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.68 E-value=0.00013 Score=67.63 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..+.-||+||.|+|.+...++.. +++|+++|+||.++....+.+.... ...+++++++|. ++..-..||++|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp---~~~kLqV~~gD~---lK~d~P~fd~cV 128 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP---KSGKLQVLHGDF---LKTDLPRFDGCV 128 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC---ccceeeEEeccc---ccCCCcccceee
Confidence 34667999999999999999983 5789999999999998887765331 147999999995 444347899999
Q ss_pred ecCCCC
Q 019550 184 GDLADP 189 (339)
Q Consensus 184 ~D~~d~ 189 (339)
.+.+-.
T Consensus 129 sNlPyq 134 (315)
T KOG0820|consen 129 SNLPYQ 134 (315)
T ss_pred ccCCcc
Confidence 998743
No 217
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.67 E-value=0.00061 Score=64.50 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=97.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvI 182 (339)
...+|||+++|-|+=...++.... ...|+++|+++.=+...++++...+ -..+.+...|++.+.... ...||.|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g----~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG----VFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-----SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC----CceEEEEeeccccccccccccccchh
Confidence 346799999999998877776544 5789999999999999998876543 467888889999886544 3469999
Q ss_pred EecCCCCCC----CCccc------------cCCcHHHHHHHHcccc----CCCcEEEEecCCCCccCchhhHHHHHHHHH
Q 019550 183 FGDLADPVE----GGPCY------------QLYTKSFYERILKPKL----NDNGIFVTQAGPAGIFTHKEVFSSIYNTIK 242 (339)
Q Consensus 183 i~D~~d~~~----~~p~~------------~L~t~ef~~~~~~~~L----~~gGilv~~~~~~~~~~~~~~~~~i~~~l~ 242 (339)
++|++-... ..|.. .-...+.++. +.+.+ +|||+++-.+.+. ..+....+++.+-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~-a~~~~~~~~k~gG~lvYsTCS~----~~eENE~vV~~fl 235 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDN-AAKLLNIDFKPGGRLVYSTCSL----SPEENEEVVEKFL 235 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHH-HHHCEHHHBEEEEEEEEEESHH----HGGGTHHHHHHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHH-HHHhhcccccCCCeEEEEeccH----HHHHHHHHHHHHH
Confidence 999983211 01100 0013467777 68899 9999998665432 3445666777777
Q ss_pred hHCCceEE
Q 019550 243 QVFKHVVA 250 (339)
Q Consensus 243 ~~F~~v~~ 250 (339)
+.++....
T Consensus 236 ~~~~~~~l 243 (283)
T PF01189_consen 236 KRHPDFEL 243 (283)
T ss_dssp HHSTSEEE
T ss_pred HhCCCcEE
Confidence 77877654
No 218
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00037 Score=64.73 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=91.2
Q ss_pred CCCCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH--HHHhcCCcee
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA--ELEKRNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~--~l~~~~~~yD 180 (339)
.....||+-|.|+|++...+++. .|-.++...|....-.+.|++.|....- ..++.+.+.|... |.. ....+|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi---~~~vt~~hrDVc~~GF~~-ks~~aD 179 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI---GDNVTVTHRDVCGSGFLI-KSLKAD 179 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC---CcceEEEEeecccCCccc-cccccc
Confidence 44678999999999999999874 3557999999999999999999986653 5788998888653 222 146899
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceEE
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVVA 250 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~~ 250 (339)
.|++|.+.|+.+-| . +.++|+.+|..+++. +|| .+..+...+.|++. |-.+..
T Consensus 180 aVFLDlPaPw~AiP-----------h-a~~~lk~~g~r~csF-SPC----IEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 180 AVFLDLPAPWEAIP-----------H-AAKILKDEGGRLCSF-SPC----IEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred eEEEcCCChhhhhh-----------h-hHHHhhhcCceEEec-cHH----HHHHHHHHHHHHhCCCceEEE
Confidence 99999999985444 2 345788888555543 454 34555666677763 544443
No 219
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.67 E-value=4.1e-05 Score=67.40 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=75.4
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecC
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDL 186 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~ 186 (339)
..+.++|.|+|.++..+++ . +.+|.++|.||...+.|++++..+. +.+++++.+|+++|=- +..|+|++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~-~-A~rViAiE~dPk~a~~a~eN~~v~g----~~n~evv~gDA~~y~f---e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH-A-AERVIAIEKDPKRARLAEENLHVPG----DVNWEVVVGDARDYDF---ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHHHHh-h-hceEEEEecCcHHHHHhhhcCCCCC----CcceEEEecccccccc---cccceeHHHH
Confidence 5689999999999986555 4 6899999999999999999987664 6899999999998721 5689999988
Q ss_pred CCCCC-CCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 187 ADPVE-GGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 187 ~d~~~-~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
-|..- ..+ ....+.. +-+.|+.+|.++-|
T Consensus 105 lDTaLi~E~-----qVpV~n~-vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIEEK-----QVPVINA-VLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhccc-----ccHHHHH-HHHHhhcCCccccH
Confidence 65320 011 1234555 44578888887644
No 220
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.58 E-value=0.00081 Score=63.27 Aligned_cols=128 Identities=14% Similarity=0.187 Sum_probs=89.5
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCC--CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCc
Q 019550 103 HQNPKTVFIMGGGEGSAAREALKHKSL--EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEK 178 (339)
Q Consensus 103 ~~~p~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~ 178 (339)
...|-+||+|.||.|.....++...+. .+|..+|.+|.-++..++.....+. ..-+++..+|+++. +.....+
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL---~~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL---EDIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC---ccceEEEecCCCCHhHhhccCCC
Confidence 356889999999999999988876554 7999999999999999998765432 34569999999876 4444567
Q ss_pred eeEEEecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 179 FDVIFGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 179 yDvIi~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
.+++|+..- +-. +-+.+. ..-+.. +.++|.|||.|+. ++.| |.. .++-|.+.|.+
T Consensus 210 P~l~iVsGL~ElF---~Dn~lv-~~sl~g-l~~al~pgG~lIy-TgQP--wHP--Qle~IAr~Lts 265 (311)
T PF12147_consen 210 PTLAIVSGLYELF---PDNDLV-RRSLAG-LARALEPGGYLIY-TGQP--WHP--QLEMIARVLTS 265 (311)
T ss_pred CCEEEEecchhhC---CcHHHH-HHHHHH-HHHHhCCCcEEEE-cCCC--CCc--chHHHHHHHhc
Confidence 898887653 211 111222 234566 6889999999874 5555 432 24445555553
No 221
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.57 E-value=0.00013 Score=68.28 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=61.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCceeEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yDvI 182 (339)
+...||+||.|.|.+.++++++. .++++||+|+...+..++.+.. +++++++.+|+.++-... ..+...|
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~------~~~~~vi~~D~l~~~~~~~~~~~~~~v 101 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS------NPNVEVINGDFLKWDLYDLLKNQPLLV 101 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT------CSSEEEEES-TTTSCGGGHCSSSEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh------cccceeeecchhccccHHhhcCCceEE
Confidence 56789999999999999999864 8999999999999999987762 589999999998752211 2356788
Q ss_pred EecCCC
Q 019550 183 FGDLAD 188 (339)
Q Consensus 183 i~D~~d 188 (339)
+.+++-
T Consensus 102 v~NlPy 107 (262)
T PF00398_consen 102 VGNLPY 107 (262)
T ss_dssp EEEETG
T ss_pred EEEecc
Confidence 888763
No 222
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.0012 Score=59.97 Aligned_cols=133 Identities=19% Similarity=0.217 Sum_probs=87.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+++++|||.|+|-=+.-++-..|..++|.+|...+=+...++-.... +-++++++++.+.++-.+... ||+|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~~~~-~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQEKKQ-YDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhccccccc-CcEEEee
Confidence 68999999999986665553456677999999988776665544322 247899999998776433222 9999999
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce-EEEEEeeccc
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV-VAYTAHVPSF 258 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v-~~~~~~iP~~ 258 (339)
+..+. ....+. +...|++||.++..-+.. ..+.+.+..+.+......+ ..+....|.-
T Consensus 143 Ava~L----------~~l~e~-~~pllk~~g~~~~~k~~~----~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~ 201 (215)
T COG0357 143 AVASL----------NVLLEL-CLPLLKVGGGFLAYKGLA----GKDELPEAEKAILPLGGQVEKVFSLTVPEL 201 (215)
T ss_pred hccch----------HHHHHH-HHHhcccCCcchhhhHHh----hhhhHHHHHHHHHhhcCcEEEEEEeecCCC
Confidence 88543 144555 678999999876543321 2344555555555543333 3444445643
No 223
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.0031 Score=56.37 Aligned_cols=149 Identities=15% Similarity=0.261 Sum_probs=97.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH--hcCCceeE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE--KRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~--~~~~~yDv 181 (339)
....+||-||..+|++...+...-+...|.+||.+|.+.+- .+.... +.+++--+.+||+.--+ ..-+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re---Ll~~a~---~R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE---LLDVAE---KRPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH---HHHHHH---hCCCceeeecccCCcHHhhhhcccccE
Confidence 45689999999999999999987777789999999987542 222211 24778888899864321 12367999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCc--EEEEecCCCCcc-CchhhHHHHHHHHHhHCCceEEEEEeeccc
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNG--IFVTQAGPAGIF-THKEVFSSIYNTIKQVFKHVVAYTAHVPSF 258 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gG--ilv~~~~~~~~~-~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~ 258 (339)
|+.|...|.. ++-+..+ +..-|+++| ++++-..|-... .....+++..+.|++-+-.+.- .+....|
T Consensus 149 iy~DVAQp~Q--------a~I~~~N-a~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e-~~~LePy 218 (231)
T COG1889 149 IYQDVAQPNQ--------AEILADN-AEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILE-VVDLEPY 218 (231)
T ss_pred EEEecCCchH--------HHHHHHH-HHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeE-EeccCCc
Confidence 9999986641 3345566 678999999 555544332111 2345677777788776543332 2334446
Q ss_pred CCceeEEEEe
Q 019550 259 ADTWGWVMAS 268 (339)
Q Consensus 259 ~~~~~~~~as 268 (339)
.....++++.
T Consensus 219 e~DH~~i~~~ 228 (231)
T COG1889 219 EKDHALIVAK 228 (231)
T ss_pred ccceEEEEEe
Confidence 5556566553
No 224
>PRK04148 hypothetical protein; Provisional
Probab=97.45 E-value=0.00034 Score=58.78 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=49.3
Q ss_pred CCCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+.+++|+||+|.|. ++..+.+ . ...|+++|++|..++.+++. .++++.+|..+-=...-+.+|+|
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~-~-G~~ViaIDi~~~aV~~a~~~-----------~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKE-S-GFDVIVIDINEKAVEKAKKL-----------GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHH-C-CCEEEEEECCHHHHHHHHHh-----------CCeEEECcCCCCCHHHHhcCCEE
Confidence 345789999999996 7766665 4 36899999999999888765 24666677543211112557777
Q ss_pred EecCC
Q 019550 183 FGDLA 187 (339)
Q Consensus 183 i~D~~ 187 (339)
.+--+
T Consensus 82 ysirp 86 (134)
T PRK04148 82 YSIRP 86 (134)
T ss_pred EEeCC
Confidence 76554
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00049 Score=67.12 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=80.4
Q ss_pred CeEEEEecchhHHHHHHHhcCCC--------------------------------C-------EEEEEEcCHHHHHHHHH
Q 019550 107 KTVFIMGGGEGSAAREALKHKSL--------------------------------E-------KVVMCDIDQEVVDFCRR 147 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~--------------------------------~-------~v~~VEid~~vi~~ar~ 147 (339)
+..+|-=||+|+++.|++..... + .+.++|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 57999999999999998864321 1 37799999999999999
Q ss_pred hhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCc---cccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 148 FLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGP---CYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 148 ~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p---~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+....+. ...+++..+|+..+ +...+.+|+||+|+|-...-+. ...|| ++|.+. +++.++--+.+++.+
T Consensus 273 NA~~AGv---~d~I~f~~~d~~~l-~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~-lk~~~~~ws~~v~tt 344 (381)
T COG0116 273 NARAAGV---GDLIEFKQADATDL-KEPLEEYGVVISNPPYGERLGSEALVAKLY-REFGRT-LKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCC---CceEEEEEcchhhC-CCCCCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHH-HHHHhcCCceEEEEc
Confidence 9765543 57899999998664 3222789999999985432111 12254 367776 788888777777653
No 226
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00017 Score=65.93 Aligned_cols=106 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCC--CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH-HHh--cCCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSL--EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE-LEK--RNEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~--~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~-l~~--~~~~y 179 (339)
.+.+||+||||.|.+.--+++..+. -.|.++|.+|..+++.+++-... ..+++..+-|.-.- +.. ..+.+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-----e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-----ESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc-----hhhhcccceeccchhccCCCCcCcc
Confidence 3458999999999999999987666 78999999999999999885543 34555555553321 222 13678
Q ss_pred eEEEecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+|++--. ... .| .. -...++. +.+.|||||.+++-
T Consensus 146 D~it~IFvLSAi--~p-ek--~~~a~~n-l~~llKPGG~llfr 182 (264)
T KOG2361|consen 146 DIITLIFVLSAI--HP-EK--MQSVIKN-LRTLLKPGGSLLFR 182 (264)
T ss_pred ceEEEEEEEecc--Ch-HH--HHHHHHH-HHHHhCCCcEEEEe
Confidence 87755332 111 11 11 1256777 78999999998875
No 227
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.26 E-value=0.00069 Score=60.73 Aligned_cols=107 Identities=18% Similarity=0.279 Sum_probs=61.9
Q ss_pred CCCeEEEEecchhH----HHHHHHh---c-CC-CCEEEEEEcCHHHHHHHHH------------------hh-hhhcccc
Q 019550 105 NPKTVFIMGGGEGS----AAREALK---H-KS-LEKVVMCDIDQEVVDFCRR------------------FL-TVNQEAF 156 (339)
Q Consensus 105 ~p~~VL~IG~G~G~----~~~~l~~---~-~~-~~~v~~VEid~~vi~~ar~------------------~f-~~~~~~~ 156 (339)
.+-+|+..||++|- ++..+.. . .+ ..+|.+.|||+.+++.|++ || ...+..+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46789999999996 3333333 1 11 3589999999999999987 22 1111000
Q ss_pred C-----CCCeEEEEccHHHHHHhcCCceeEEEecCC----CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 157 C-----SKKLNLVVNDAKAELEKRNEKFDVIFGDLA----DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 157 ~-----~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~----d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
. ..+|++...|..+ .....+.||+|++--. ++. .....++. +.+.|+|||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~--------~~~~vl~~-l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE--------TQQRVLRR-LHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH--------HHHHHHHH-HGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH--------HHHHHHHH-HHHHcCCCCEEEEe
Confidence 0 2478888888877 2223478999998642 211 13567787 78999999999874
No 228
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.25 E-value=0.00073 Score=64.92 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=68.8
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
-...+|+|+|.|.+++.++.++| +|.+++.|..-+..++.++. |.|+.+.+|+++- ..+-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~--------~gV~~v~gdmfq~----~P~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA--------PGVEHVAGDMFQD----TPKGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc--------CCcceeccccccc----CCCcCeEEEE
Confidence 46799999999999999999776 49999999776666666543 2388888998654 2345788764
Q ss_pred C-----CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 186 L-----ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 186 ~-----~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
. +|.. -..|++. |++.|+|+|.+++-
T Consensus 244 WiLhdwtDed---------cvkiLkn-C~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 244 WILHDWTDED---------CVKILKN-CKKSLPPGGKIIVV 274 (342)
T ss_pred eecccCChHH---------HHHHHHH-HHHhCCCCCEEEEE
Confidence 4 4331 2489999 79999999977653
No 229
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.21 E-value=0.00085 Score=62.94 Aligned_cols=111 Identities=18% Similarity=0.171 Sum_probs=78.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh----h-----------cc---------------
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV----N-----------QE--------------- 154 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~----~-----------~~--------------- 154 (339)
++.+||+=|||-|.++.++++. + -.+.+.|.+--|+=.++--+.. . ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G-~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-G-YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-c-ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999985 4 5799999999886544431111 0 00
Q ss_pred ------ccCCCCeEEEEccHHHHHHhc--CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 155 ------AFCSKKLNLVVNDAKAELEKR--NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 155 ------~~~~~rv~v~~~D~~~~l~~~--~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
.-...++.+..||..++-... .++||+|+.--|=.. +..+ .++++. +++.|||||+ .+|.|+-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT----A~Ni--~~Yi~t-I~~lLkpgG~-WIN~GPL 204 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT----AENI--IEYIET-IEHLLKPGGY-WINFGPL 204 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec----hHHH--HHHHHH-HHHHhccCCE-EEecCCc
Confidence 012357889999988776444 478999988765211 1122 388998 7999999995 5688764
No 230
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.13 E-value=0.001 Score=59.78 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred CCCC-eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH-HHHHH---hcCCc
Q 019550 104 QNPK-TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA-KAELE---KRNEK 178 (339)
Q Consensus 104 ~~p~-~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~-~~~l~---~~~~~ 178 (339)
++.. +||+||+|+|--+.+++++.|...-.--|.|+......+.|.......--.+-+.+-..+. ..+.. ...+.
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3344 5999999999999999999998878889999998777776654322100012233322221 11110 12468
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
||.|++--.-+. .| . -.+..+|+. +.+.|++||+|++..
T Consensus 103 ~D~i~~~N~lHI--~p-~-~~~~~lf~~-a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 103 FDAIFCINMLHI--SP-W-SAVEGLFAG-AARLLKPGGLLFLYG 141 (204)
T ss_pred cceeeehhHHHh--cC-H-HHHHHHHHH-HHHhCCCCCEEEEeC
Confidence 999998665332 11 1 125678898 899999999999873
No 231
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.12 E-value=0.0067 Score=54.78 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=89.3
Q ss_pred EEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC
Q 019550 109 VFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 188 (339)
|.||||--|.++.++++.....+++++|+++.-++.|+++....+. ..+++++.+||.+-+... +..|.|++..--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l---~~~i~~rlgdGL~~l~~~-e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL---EDRIEVRLGDGLEVLKPG-EDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT----TTTEEEEE-SGGGG--GG-G---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---cccEEEEECCcccccCCC-CCCCEEEEecCC
Confidence 6899999999999999976667899999999999999999876543 579999999999877542 347998887541
Q ss_pred CCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCc-eeEEEE
Q 019550 189 PVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADT-WGWVMA 267 (339)
Q Consensus 189 ~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~-~~~~~a 267 (339)
.. ...++++. ....++.--.|++|-. . ....+.+.|.+....+.-... +.. .+. +.++.+
T Consensus 77 -------G~-lI~~ILe~-~~~~~~~~~~lILqP~-----~---~~~~LR~~L~~~gf~I~~E~l-v~e-~~~~YeIi~~ 137 (205)
T PF04816_consen 77 -------GE-LIIEILEA-GPEKLSSAKRLILQPN-----T---HAYELRRWLYENGFEIIDEDL-VEE-NGRFYEIIVA 137 (205)
T ss_dssp -------HH-HHHHHHHH-TGGGGTT--EEEEEES-----S----HHHHHHHHHHTTEEEEEEEE-EEE-TTEEEEEEEE
T ss_pred -------HH-HHHHHHHh-hHHHhccCCeEEEeCC-----C---ChHHHHHHHHHCCCEEEEeEE-EeE-CCEEEEEEEE
Confidence 11 24577777 5677776668888731 1 234566777766433332211 222 222 234567
Q ss_pred ecCC
Q 019550 268 SDQP 271 (339)
Q Consensus 268 s~~p 271 (339)
++..
T Consensus 138 ~~~~ 141 (205)
T PF04816_consen 138 ERGE 141 (205)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6654
No 232
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.10 E-value=0.0043 Score=56.03 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=60.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhc-----cccCCCCeEEEEccHHHH--HHhcCC
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ-----EAFCSKKLNLVVNDAKAE--LEKRNE 177 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~-----~~~~~~rv~v~~~D~~~~--l~~~~~ 177 (339)
+....+|||+|.|.....++...+..+..+||+.+...++|++...... ......++++..+|..+. ....-.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 3456899999999999888876777889999999999998876543111 112356889999997542 222224
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
.-|+|+++.+-= .+ .| ...+.. ....|++|-.++.
T Consensus 122 ~AdvVf~Nn~~F---~~--~l--~~~L~~-~~~~lk~G~~IIs 156 (205)
T PF08123_consen 122 DADVVFVNNTCF---DP--DL--NLALAE-LLLELKPGARIIS 156 (205)
T ss_dssp C-SEEEE--TTT----H--HH--HHHHHH-HHTTS-TT-EEEE
T ss_pred CCCEEEEecccc---CH--HH--HHHHHH-HHhcCCCCCEEEE
Confidence 579999987510 11 11 122333 3457887766654
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.06 E-value=0.0019 Score=54.04 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=46.5
Q ss_pred EEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH
Q 019550 109 VFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA 168 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~ 168 (339)
+||||||.|..+..+++..+..+++++|.+|.+.+.+++++..+. -++++++....
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~----~~~v~~~~~al 57 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN----LPNVVLLNAAV 57 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC----CCcEEEEEeee
Confidence 799999999999999987766799999999999999999987653 24577776553
No 234
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.05 E-value=0.0028 Score=57.31 Aligned_cols=78 Identities=18% Similarity=0.180 Sum_probs=57.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDv 181 (339)
++..|+|.-||.|+-....+... ..|.++||||.=+..||+++...+- ..|+.+++||..+..... +..+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI---~~rItFI~GD~ld~~~~lq~~K~~~~~ 168 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV---PDRITFICGDFLDLASKLKADKIKYDC 168 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC---CceeEEEechHHHHHHHHhhhhheeee
Confidence 56678886666666555555533 4799999999999999999876543 349999999988765443 355778
Q ss_pred EEecCC
Q 019550 182 IFGDLA 187 (339)
Q Consensus 182 Ii~D~~ 187 (339)
++..++
T Consensus 169 vf~spp 174 (263)
T KOG2730|consen 169 VFLSPP 174 (263)
T ss_pred eecCCC
Confidence 877765
No 235
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.03 E-value=0.014 Score=54.93 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=92.6
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEecC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDL 186 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~ 186 (339)
+|+++.||.|++...+.+ .+...+.++|+|+..++..+.+++.. ++.+|..+..... ...+|+|+.++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~-~G~~~v~a~e~~~~a~~~~~~N~~~~----------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK-AGFEIVAANEIDKSAAETYEANFPNK----------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHH-cCCEEEEEEeCCHHHHHHHHHhCCCC----------CccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999877665 46677899999999999999887421 5567766654332 45799999999
Q ss_pred CCC-CC--------CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC--chhhHHHHHHHHHhHCCceEEEEEee
Q 019550 187 ADP-VE--------GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT--HKEVFSSIYNTIKQVFKHVVAYTAHV 255 (339)
Q Consensus 187 ~d~-~~--------~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~i 255 (339)
+-. .. ..+-..| -.++++. + +.++|.=+++=|+ +.+.. ....+..+.+.|.+..-.+.......
T Consensus 71 PCq~fS~ag~~~~~~d~r~~L-~~~~~~~-i-~~~~P~~~v~ENV--~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a 145 (275)
T cd00315 71 PCQPFSIAGKRKGFEDTRGTL-FFEIIRI-L-KEKKPKYFLLENV--KGLLTHDNGNTLKVILNTLEELGYNVYWKLLNA 145 (275)
T ss_pred CChhhhHHhhcCCCCCchHHH-HHHHHHH-H-HhcCCCEEEEEcC--cchhccCchHHHHHHHHHHHhCCcEEEEEEEEH
Confidence 721 10 0111112 2466665 4 4668875554444 22121 23467788888887766665544443
Q ss_pred cccC----CceeEEEEecC
Q 019550 256 PSFA----DTWGWVMASDQ 270 (339)
Q Consensus 256 P~~~----~~~~~~~as~~ 270 (339)
..|| ..-.|++|.+.
T Consensus 146 ~~~GvPQ~R~R~~~ia~~~ 164 (275)
T cd00315 146 SDYGVPQNRERVFIIGIRK 164 (275)
T ss_pred HHcCCCCCCcEEEEEEEeC
Confidence 3343 22347788764
No 236
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0045 Score=55.69 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=83.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH-----HHHh-c-
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA-----ELEK-R- 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~-----~l~~-~- 175 (339)
.+...|+|||+.-|+....+++..+. ..|++||++|--. .+.|.++.+|..+ -|.. .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------IPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------------CCCceEEeeeccCccHHHHHHHHcC
Confidence 45688999999999999988875443 3499999987431 2557777777643 2222 1
Q ss_pred CCceeEEEecCCCCCCCCcc-ccCC----cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEE
Q 019550 176 NEKFDVIFGDLADPVEGGPC-YQLY----TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVA 250 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~-~~L~----t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~ 250 (339)
..+.|+|++|......+... .+.. ....++- +...|+++|.+++-. + ..+....+++.+++.|..|..
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~-a~~vL~~~G~fv~K~-----f-qg~~~~~~l~~~~~~F~~v~~ 181 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEF-ALEVLKPGGSFVAKV-----F-QGEDFEDLLKALRRLFRKVKI 181 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHH-HHHeeCCCCeEEEEE-----E-eCCCHHHHHHHHHHhhceeEE
Confidence 24579999999743321110 1111 1122332 457999999998753 2 334567889999999999876
Q ss_pred EE
Q 019550 251 YT 252 (339)
Q Consensus 251 ~~ 252 (339)
..
T Consensus 182 ~K 183 (205)
T COG0293 182 FK 183 (205)
T ss_pred ec
Confidence 53
No 237
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.97 E-value=0.0044 Score=59.22 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=64.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---C-Ccee
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---N-EKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~-~~yD 180 (339)
+...++|.=+|.|+-+..+++..+..+|+++|.||.+++.+++.+... ..|+++++++..++.... . .++|
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-----~~R~~~i~~nF~~l~~~l~~~~~~~vD 94 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-----EGRVVLIHDNFANFFEHLDELLVTKID 94 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHHhcCCCccc
Confidence 346799999999999999998655589999999999999999987532 469999999988765432 2 5799
Q ss_pred EEEecCC
Q 019550 181 VIFGDLA 187 (339)
Q Consensus 181 vIi~D~~ 187 (339)
.|+.|+-
T Consensus 95 gIl~DLG 101 (305)
T TIGR00006 95 GILVDLG 101 (305)
T ss_pred EEEEecc
Confidence 9999994
No 238
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.92 E-value=0.0023 Score=64.40 Aligned_cols=106 Identities=14% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCeEEEEecchhHHHHHHHhc----CCCCEEEEEEcCHHHHHHHHH-hhhhhccccCCCCeEEEEccHHHHHHhcCCcee
Q 019550 106 PKTVFIMGGGEGSAAREALKH----KSLEKVVMCDIDQEVVDFCRR-FLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFD 180 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~----~~~~~v~~VEid~~vi~~ar~-~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yD 180 (339)
+..|+++|+|-|-+++..++. ....++.+||.+|.++...+. ++... +.+|+++..|.|.|-+ ..++.|
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~w~a-p~eq~D 441 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRKWNA-PREQAD 441 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccccCC-chhhcc
Confidence 345888999999988776652 223578999999998876554 33333 6899999999998862 238899
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+|++.+-... | ..=.+.|.+.. +.+.|+|+||.+-+.
T Consensus 442 I~VSELLGSF--G--DNELSPECLDG-~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 442 IIVSELLGSF--G--DNELSPECLDG-AQKFLKPDGISIPSS 478 (649)
T ss_pred chHHHhhccc--c--CccCCHHHHHH-HHhhcCCCceEccch
Confidence 9999886433 1 12247799998 899999999987553
No 239
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0009 Score=66.79 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=82.7
Q ss_pred CCCCeEEEEecchhHHHHHHH-hcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC---Cce
Q 019550 104 QNPKTVFIMGGGEGSAAREAL-KHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN---EKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~---~~y 179 (339)
.++-+||+.=+++|.-+...+ ...++.+|++-|.++..++..+++...+.. +..++....|+...+-... +.|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v---~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV---EDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc---hhhcccccchHHHHHHhcccccccc
Confidence 346678887777777654444 445678999999999999999999988743 6789999999988765554 889
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+|-+|++.. + ..|++. +-+.++.||+|++.+
T Consensus 185 DvIDLDPyGs----~------s~FLDs-Avqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYGS----P------SPFLDS-AVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCCC----c------cHHHHH-HHHHhhcCCEEEEEe
Confidence 9999999832 2 278888 788999999998763
No 240
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.87 E-value=0.0015 Score=61.92 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCCeEEEEecchhH----HHHHHHhcC----CCCEEEEEEcCHHHHHHHHHh------------------hhhhcc---c
Q 019550 105 NPKTVFIMGGGEGS----AAREALKHK----SLEKVVMCDIDQEVVDFCRRF------------------LTVNQE---A 155 (339)
Q Consensus 105 ~p~~VL~IG~G~G~----~~~~l~~~~----~~~~v~~VEid~~vi~~ar~~------------------f~~~~~---~ 155 (339)
.+-+|+..||++|- ++..+.... ...+|++.|||+.+++.|++- |..... .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35699999999995 344333321 135799999999999999873 210000 0
Q ss_pred ---c---CCCCeEEEEccHHHHHHhcCCceeEEEecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 156 ---F---CSKKLNLVVNDAKAELEKRNEKFDVIFGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 156 ---~---~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
. -..+|++...|..+.-....++||+|++--. -.. .+ -.....++. +.+.|+|||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF--~~---~~~~~vl~~-l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF--DK---TTQERILRR-FVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC--CH---HHHHHHHHH-HHHHhCCCcEEEEe
Confidence 0 0134566666654310001368999998432 010 00 013467888 78999999998874
No 241
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.78 E-value=0.0024 Score=61.64 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..++||||++.|+....+++. + .+|++||..+-.-.+ .++++|+.+.+|+..+... .+.+|+|+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G-~~V~AVD~g~l~~~L-----------~~~~~V~h~~~d~fr~~p~-~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-G-MFVTAVDNGPMAQSL-----------MDTGQVEHLRADGFKFRPP-RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-C-CEEEEEechhcCHhh-----------hCCCCEEEEeccCcccCCC-CCCCCEEE
Confidence 35678999999999999998884 5 499999965422111 2379999999999998643 57899999
Q ss_pred ecCCC
Q 019550 184 GDLAD 188 (339)
Q Consensus 184 ~D~~d 188 (339)
+|...
T Consensus 276 cDmve 280 (357)
T PRK11760 276 CDMVE 280 (357)
T ss_pred Eeccc
Confidence 99984
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.65 E-value=0.0081 Score=56.61 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=38.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhh
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLT 150 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~ 150 (339)
.|++|||+|+|.|+....+....+ ..++++||.++.++++++.-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 589999999999987766655443 5789999999999999998765
No 243
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.65 E-value=0.0043 Score=59.02 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=47.9
Q ss_pred CCeEEEEecchhHH-HHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCCCCeEEEEccHH----HHHHhcCCce
Q 019550 106 PKTVFIMGGGEGSA-AREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCSKKLNLVVNDAK----AELEKRNEKF 179 (339)
Q Consensus 106 p~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~~rv~v~~~D~~----~~l~~~~~~y 179 (339)
.-++||||+|.-.+ +.-.++.+ .-+.++.|||+..++.|+++...+ .. ..+++++...-. .-+....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L---~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL---ESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T----TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc---ccceEEEEcCCccccchhhhccccee
Confidence 45799999997755 44444545 479999999999999999999876 43 678888765322 2222334789
Q ss_pred eEEEecCCC
Q 019550 180 DVIFGDLAD 188 (339)
Q Consensus 180 DvIi~D~~d 188 (339)
|+.++++|-
T Consensus 179 dftmCNPPF 187 (299)
T PF05971_consen 179 DFTMCNPPF 187 (299)
T ss_dssp EEEEE----
T ss_pred eEEecCCcc
Confidence 999999973
No 244
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0016 Score=61.24 Aligned_cols=164 Identities=17% Similarity=0.133 Sum_probs=102.5
Q ss_pred eeeceEEEeeecCCceEEEEEeCCceEEEEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhc
Q 019550 47 FALNRVLHKGTSEFQDIALLDTKRFGKVLVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKH 126 (339)
Q Consensus 47 ~~~~~vl~~~~s~~q~I~V~e~~~~g~~L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~ 126 (339)
++...|++.+.++++++.|-. +..+.++.+++.....+.+ ..|.+.|+-- -..++|.++|| +|....+.+++
T Consensus 122 pkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~s-k~y~p~la~g-----y~~~~v~l~iG-DG~~fl~~~~~ 193 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESS-KQYLPTLACG-----YEGKKVKLLIG-DGFLFLEDLKE 193 (337)
T ss_pred CCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHH-HHHhHHHhcc-----cCCCceEEEec-cHHHHHHHhcc
Confidence 344467778888888877766 4467777777665554443 3566666521 24567888887 88888888875
Q ss_pred CCCCEEEEEEcCHHHHHHHHHhh----hhhccccCCCCeEEEEccHHHHHHhc---CCceeEEEecCCC-CCCCCccccC
Q 019550 127 KSLEKVVMCDIDQEVVDFCRRFL----TVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDVIFGDLAD-PVEGGPCYQL 198 (339)
Q Consensus 127 ~~~~~v~~VEid~~vi~~ar~~f----~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDvIi~D~~d-~~~~~p~~~L 198 (339)
.+ -.|+++|+|.-+..++..|. ..-..++....+.+.++|..-.+.+. ..+||-++.+..+ ++...|....
T Consensus 194 ~~-~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTyps 272 (337)
T KOG1562|consen 194 NP-FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPS 272 (337)
T ss_pred CC-ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCcc
Confidence 54 68999999999888887764 33345677888999999876544321 2456665555543 2211221000
Q ss_pred CcHHHHHHHHccccCCCcEEEEec
Q 019550 199 YTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 199 ~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
- +--|.. +.+ |+|+|-+....
T Consensus 273 g-~igf~l-~s~-~~~~~~~~~p~ 293 (337)
T KOG1562|consen 273 G-RIGFML-CSK-LKPDGKYKTPG 293 (337)
T ss_pred c-eEEEEE-ecc-cCCCCCccCCC
Confidence 0 011222 233 99999887654
No 245
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.53 E-value=0.0021 Score=58.95 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=50.0
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccC-----CCCeEEEEccHHHHHHhcCCceeE
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFC-----SKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~-----~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.+|||.=+|-|.-+..++. .+ ++|+++|-+|-+..+.+.=+.......+ -.|++++.+|..+||+.....||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~G-~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-LG-CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-HT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHc-cC-CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 4899988888887776654 44 6899999999998887765542211000 148999999999999865789999
Q ss_pred EEecCCCC
Q 019550 182 IFGDLADP 189 (339)
Q Consensus 182 Ii~D~~d~ 189 (339)
|..||--|
T Consensus 155 VY~DPMFp 162 (234)
T PF04445_consen 155 VYFDPMFP 162 (234)
T ss_dssp EEE--S--
T ss_pred EEECCCCC
Confidence 99999644
No 246
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0035 Score=63.04 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=62.5
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC----Cce
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN----EKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~----~~y 179 (339)
+..+-+||+.||+|.++..+++ ++.+|.+||++|..++-|+++...++ -.+.+++++-+.+-+.... ..=
T Consensus 382 ~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ng----isNa~Fi~gqaE~~~~sl~~~~~~~~ 455 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQING----ISNATFIVGQAEDLFPSLLTPCCDSE 455 (534)
T ss_pred CCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcC----ccceeeeecchhhccchhcccCCCCC
Confidence 4457799999999999998887 57899999999999999999987764 4789999996555443321 233
Q ss_pred e-EEEecCCCC
Q 019550 180 D-VIFGDLADP 189 (339)
Q Consensus 180 D-vIi~D~~d~ 189 (339)
+ ++|+|++.+
T Consensus 456 ~~v~iiDPpR~ 466 (534)
T KOG2187|consen 456 TLVAIIDPPRK 466 (534)
T ss_pred ceEEEECCCcc
Confidence 5 788888754
No 247
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=0.019 Score=54.43 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=62.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc----CCcee
Q 019550 106 PKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR----NEKFD 180 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~----~~~yD 180 (339)
..-.+|.=.|.|+-++.+++..+ ..+++++|.||.+++.|++.+... ++|++++++...+..... .+++|
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-----~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-----DGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-----CCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 46788999999999999998665 456999999999999999987654 589999999876654332 26899
Q ss_pred EEEecCC
Q 019550 181 VIFGDLA 187 (339)
Q Consensus 181 vIi~D~~ 187 (339)
-|+.|+-
T Consensus 99 GiL~DLG 105 (314)
T COG0275 99 GILLDLG 105 (314)
T ss_pred EEEEecc
Confidence 9999984
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.39 E-value=0.06 Score=48.86 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++..++.||||--+.++.++.+..+...++++|+++.-++.|.++++.+.. .+++++..+|+..-+.. ....|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l---~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL---SERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC---cceEEEeccCCccccCc-cCCcCEEE
Confidence 344559999999999999999988889999999999999999999987654 68999999999766643 35799999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCcee
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWG 263 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~ 263 (339)
+..-.. ..-.++++. -++.|+.==.+++|-. .+ ...+.+.+...-........ ++.-+--+-
T Consensus 91 IAGMGG--------~lI~~ILee-~~~~l~~~~rlILQPn-----~~---~~~LR~~L~~~~~~I~~E~i-leE~~kiYE 152 (226)
T COG2384 91 IAGMGG--------TLIREILEE-GKEKLKGVERLILQPN-----IH---TYELREWLSANSYEIKAETI-LEEDGKIYE 152 (226)
T ss_pred EeCCcH--------HHHHHHHHH-hhhhhcCcceEEECCC-----CC---HHHHHHHHHhCCceeeeeee-ecccCeEEE
Confidence 876521 123577777 6778875446777621 12 23455566554344433322 222111123
Q ss_pred EEEEecCC
Q 019550 264 WVMASDQP 271 (339)
Q Consensus 264 ~~~as~~p 271 (339)
++++.+.+
T Consensus 153 Ilv~e~~~ 160 (226)
T COG2384 153 ILVVEKSS 160 (226)
T ss_pred EEEEecCC
Confidence 46676654
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.33 E-value=0.033 Score=44.20 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=64.4
Q ss_pred EEEEecchhHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH-HHhcC-CceeEEEec
Q 019550 109 VFIMGGGEGSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE-LEKRN-EKFDVIFGD 185 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~-l~~~~-~~yDvIi~D 185 (339)
++++|||.|... .+....+. ..++++|+++.++..++..... .. ...+.+..+|.... +.-.. ..||++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG---LGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC---CCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999965 33332222 3788899999999985544322 11 11167788886652 32223 479999333
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
..... . . ....+.. +.+.|+++|.+++...
T Consensus 127 ~~~~~--~---~--~~~~~~~-~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHL--L---P--PAKALRE-LLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhc--C---C--HHHHHHH-HHHhcCCCcEEEEEec
Confidence 32111 0 0 3567787 7899999998887653
No 250
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.24 E-value=0.012 Score=55.16 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=66.7
Q ss_pred CCCeEEEEecchhH----HHHHHHhcCC-----CCEEEEEEcCHHHHHHHHHhh-h-hhc-c------------ccCC--
Q 019550 105 NPKTVFIMGGGEGS----AAREALKHKS-----LEKVVMCDIDQEVVDFCRRFL-T-VNQ-E------------AFCS-- 158 (339)
Q Consensus 105 ~p~~VL~IG~G~G~----~~~~l~~~~~-----~~~v~~VEid~~vi~~ar~~f-~-~~~-~------------~~~~-- 158 (339)
.+-+|.-.||++|- ++..+.++.+ ..+|++.|||..+++.|+.=. + ... . ...+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 37789999999994 5555555553 478999999999999988621 1 000 0 0011
Q ss_pred --------CCeEEEEccHHHHHHhcCCceeEEEecC----CCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 159 --------KKLNLVVNDAKAELEKRNEKFDVIFGDL----ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 159 --------~rv~v~~~D~~~~l~~~~~~yDvIi~D~----~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
..|.+...|...--. ..+.||+|++-- +|.. ...+.+.. .+..|+|||+|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~--------~q~~il~~-f~~~L~~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE--------TQERILRR-FADSLKPGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH--------HHHHHHHH-HHHHhCCCCEEEE
Confidence 123344444322110 246799999854 2321 13467777 7899999999987
No 251
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.24 E-value=0.042 Score=53.47 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=67.2
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH-HhcC-CceeEE
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRN-EKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l-~~~~-~~yDvI 182 (339)
..+|+++|+|. |.++..+++..+.++|+++|+++.=+++|++++..... .++.-+ |....+ ..+. ..+|++
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~--~~~~~~----~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV--VNPSED----DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe--ecCccc----cHHHHHHHHhCCCCCCEE
Confidence 34899999995 55557788888999999999999999999997653211 011111 333333 3333 369998
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+--.- +...++. +-+.++++|.+++-.
T Consensus 243 ie~~G------------~~~~~~~-ai~~~r~gG~v~~vG 269 (350)
T COG1063 243 IEAVG------------SPPALDQ-ALEALRPGGTVVVVG 269 (350)
T ss_pred EECCC------------CHHHHHH-HHHHhcCCCEEEEEe
Confidence 87654 1245666 578999999988654
No 252
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.14 E-value=0.018 Score=48.72 Aligned_cols=107 Identities=20% Similarity=0.152 Sum_probs=65.0
Q ss_pred EEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCC-ceeEEEecCCC-CCCC--CccccCCcHHHHHH
Q 019550 131 KVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNE-KFDVIFGDLAD-PVEG--GPCYQLYTKSFYER 206 (339)
Q Consensus 131 ~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~-~yDvIi~D~~d-~~~~--~p~~~L~t~ef~~~ 206 (339)
+|.+.||.++.++.+++.+..... ..|++++...=.+..+-.++ +.|+++.++-- |... .....-.|...++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~---~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~ 77 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL---EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEA 77 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT----GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC---CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHH
Confidence 588999999999999999875432 35899988664332222234 89999999842 3210 01111235677888
Q ss_pred HHccccCCCcEEEEe--cCCCCccCchhhHHHHHHHHHhH
Q 019550 207 ILKPKLNDNGIFVTQ--AGPAGIFTHKEVFSSIYNTIKQV 244 (339)
Q Consensus 207 ~~~~~L~~gGilv~~--~~~~~~~~~~~~~~~i~~~l~~~ 244 (339)
+.+.|++||++++- .|++ ...+....+.+.+++.
T Consensus 78 -al~lL~~gG~i~iv~Y~GH~---gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 78 -ALELLKPGGIITIVVYPGHP---GGKEESEAVEEFLASL 113 (140)
T ss_dssp -HHHHEEEEEEEEEEE--STC---HHHHHHHHHHHHHHTS
T ss_pred -HHHhhccCCEEEEEEeCCCC---CCHHHHHHHHHHHHhC
Confidence 68899999988764 3555 2334455555555543
No 253
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.10 E-value=0.059 Score=53.20 Aligned_cols=139 Identities=11% Similarity=0.031 Sum_probs=95.9
Q ss_pred CCC-CCeEEEEecchhHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCce
Q 019550 103 HQN-PKTVFIMGGGEGSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKF 179 (339)
Q Consensus 103 ~~~-p~~VL~IG~G~G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~y 179 (339)
.|+ ..||||+++.-|+=..+++.. .....|.+.|.+..-+...+.++...+ -.+..+.+.|+++|-.. ...+|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG----v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG----VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC----CCceEEEccCcccccccccCccc
Confidence 344 478999999877755555543 234679999999999998888876553 36678889999876422 23589
Q ss_pred eEEEecCCCCCC---CCcc--------------ccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHH
Q 019550 180 DVIFGDLADPVE---GGPC--------------YQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIK 242 (339)
Q Consensus 180 DvIi~D~~d~~~---~~p~--------------~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~ 242 (339)
|-|++|++-... .-+. .+ +.++.+.. +-+.+++||+||-.+.+. ..+....+++.+-
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~-LQr~Llls-Ai~lv~~GGvLVYSTCSI----~~~ENE~vV~yaL 387 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAH-LQRELLLS-AIDLVKAGGVLVYSTCSI----TVEENEAVVDYAL 387 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHH-HHHHHHHH-HHhhccCCcEEEEEeeec----chhhhHHHHHHHH
Confidence 999999983210 0000 01 12455555 568999999999766543 3345677888888
Q ss_pred hHCCceEEE
Q 019550 243 QVFKHVVAY 251 (339)
Q Consensus 243 ~~F~~v~~~ 251 (339)
+.||++..-
T Consensus 388 ~K~p~~kL~ 396 (460)
T KOG1122|consen 388 KKRPEVKLV 396 (460)
T ss_pred HhCCceEec
Confidence 889998864
No 254
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.03 E-value=0.048 Score=55.78 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCC--------eEEEEccHH----HH
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKK--------LNLVVNDAK----AE 171 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~r--------v~v~~~D~~----~~ 171 (339)
.+.+|+++|+|. |..+..+++..+. +|+++|.+++..+.+++.-... ...+... .+....|.. +.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~-v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEF-LELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeE-EEeccccccccccchhhhcchhHHHHHHHH
Confidence 588999999995 5566667777775 7999999999999999852110 0000000 111111211 11
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.+..+.+|+||.-..-|. .++..+.+ +. +-+.+++||+++.-
T Consensus 242 ~~~~~~gaDVVIetag~pg--~~aP~lit----~~-~v~~mkpGgvIVdv 284 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG--KPAPKLIT----AE-MVASMKPGSVIVDL 284 (509)
T ss_pred HHhccCCCCEEEECCCCCc--ccCcchHH----HH-HHHhcCCCCEEEEE
Confidence 1111246999998886543 22223333 44 44578899998753
No 255
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.00 E-value=0.013 Score=55.99 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH---HHhc--CCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE---LEKR--NEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~---l~~~--~~~y 179 (339)
+....+|.=.|.|+-+..+++..+..++.++|.||.+++.+++.+... .+|+.+++++..++ +... ..++
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-----~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-----DDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-----CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-----cceEEEEeccHHHHHHHHHHccCCCcc
Confidence 345789988899999999998766699999999999999999887643 58999999886654 4333 2589
Q ss_pred eEEEecCC
Q 019550 180 DVIFGDLA 187 (339)
Q Consensus 180 DvIi~D~~ 187 (339)
|-|+.|+-
T Consensus 95 dgiL~DLG 102 (310)
T PF01795_consen 95 DGILFDLG 102 (310)
T ss_dssp EEEEEE-S
T ss_pred CEEEEccc
Confidence 99999984
No 256
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.022 Score=52.81 Aligned_cols=146 Identities=15% Similarity=0.082 Sum_probs=97.1
Q ss_pred CeEEEEecchhHHHHHHHhcCC------------CCEEEEEEcCHHHHHHHHHh--hhhh-------------------c
Q 019550 107 KTVFIMGGGEGSAAREALKHKS------------LEKVVMCDIDQEVVDFCRRF--LTVN-------------------Q 153 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~------------~~~v~~VEid~~vi~~ar~~--f~~~-------------------~ 153 (339)
-.|+.+|.|+|...+.+.+..+ ...++.+|.+|....-++.. ++.. .
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 4588899999998776665322 23568888887654433311 1100 0
Q ss_pred ccc-CCCCeEEEEccHHHHHHhcCC---ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC
Q 019550 154 EAF-CSKKLNLVVNDAKAELEKRNE---KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT 229 (339)
Q Consensus 154 ~~~-~~~rv~v~~~D~~~~l~~~~~---~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~ 229 (339)
..+ ..-.+.++++|+++.+..... ++|+.+.|.|.|.. .| .+++.+++.. ++++.++||.++..+.
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP--~mW~~e~l~~-~a~~~~~~~~l~t~ss------ 209 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NP--EMWEDELLNL-MARIPYRDPTLATFAA------ 209 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccC-Ch--hhccHHHHHH-HHhhcCCCCceechHH------
Confidence 112 234568899999998877655 79999999998863 34 7899999999 8999999999987531
Q ss_pred chhhHHHHHHHHHhHCCceEEEEEeecccCCceeEEEEecC
Q 019550 230 HKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQ 270 (339)
Q Consensus 230 ~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~ 270 (339)
-.-+.+.|.+....+.. .++++..-.++.+.+.
T Consensus 210 ----A~~vRr~L~~aGF~v~~----r~g~grKRem~~a~~~ 242 (252)
T COG4121 210 ----AIAVRRRLEQAGFTVEK----RTGRGKKRELLRGVKI 242 (252)
T ss_pred ----HHHHHHHHHHcCceeee----cCCccccccchhhhcc
Confidence 23455677766544432 3666654456666654
No 257
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.95 E-value=0.062 Score=51.81 Aligned_cols=110 Identities=9% Similarity=0.034 Sum_probs=71.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC----CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEE--EEccHHHH---HHh
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK----SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNL--VVNDAKAE---LEK 174 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v--~~~D~~~~---l~~ 174 (339)
+....++++|||+|.=.+-+++.. .....+.|||+.+.++.+.+.+.... -|.+++ +++|..+- +..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHHHHHhhccc
Confidence 445679999999998766555532 23568999999999999998876211 366766 67765444 432
Q ss_pred c--CCceeEEEecCCC-CCCCCccccCCcHHHHHHHHcc-ccCCCcEEEEec
Q 019550 175 R--NEKFDVIFGDLAD-PVEGGPCYQLYTKSFYERILKP-KLNDNGIFVTQA 222 (339)
Q Consensus 175 ~--~~~yDvIi~D~~d-~~~~~p~~~L~t~ef~~~~~~~-~L~~gGilv~~~ 222 (339)
. .....+|+.=... ++ ..| --...|++. +++ .|+|||.|++-.
T Consensus 151 ~~~~~~~r~~~flGSsiGN-f~~---~ea~~fL~~-~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGN-FSR---PEAAAFLAG-FLATALSPSDSFLIGL 197 (319)
T ss_pred ccccCCccEEEEeCccccC-CCH---HHHHHHHHH-HHHhhCCCCCEEEEec
Confidence 1 2335565554331 11 011 113478998 788 999999988754
No 258
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.91 E-value=0.021 Score=48.19 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=46.5
Q ss_pred CCCCeEEEEecchhHHHHHHHh-----cCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH
Q 019550 104 QNPKTVFIMGGGEGSAAREALK-----HKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA 168 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~-----~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~ 168 (339)
.++..|+|+|+|-|.+++.++. . +..+|++||.++..++.+++........+ ..+++...++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDL-EKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchh-hccchhhccch
Confidence 4577899999999999998887 4 56899999999999999988865332111 23455555443
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.91 E-value=0.011 Score=53.25 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=54.1
Q ss_pred CCCCeEEEEecchhHHHHHHHh---cC-CCCEEEEEEcCHHHH-HHHHHhhhhhccccCCCCeEEEEccHHHH--HHh--
Q 019550 104 QNPKTVFIMGGGEGSAAREALK---HK-SLEKVVMCDIDQEVV-DFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEK-- 174 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~---~~-~~~~v~~VEid~~vi-~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~-- 174 (339)
-+|+.|+++|.-.|+.+.+.+. .. +..+|.+||||..-. +.+.+.-+. .+|++++.||..+- +..
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~------~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM------SPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc------cCceEEEECCCCCHHHHHHHH
Confidence 3689999999999888876654 23 568999999975432 222222122 38999999997632 222
Q ss_pred -c--CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 175 -R--NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 175 -~--~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
. .....+||.|+.... .+ ...-++. +...+++|+.+++.
T Consensus 105 ~~~~~~~~vlVilDs~H~~-----~h--vl~eL~~-y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTH-----EH--VLAELEA-YAPLVSPGSYLIVE 146 (206)
T ss_dssp SS----SSEEEEESS---------SS--HHHHHHH-HHHT--TT-EEEET
T ss_pred HhhccCCceEEEECCCccH-----HH--HHHHHHH-hCccCCCCCEEEEE
Confidence 1 134568999987322 11 1233455 57789999999875
No 260
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.89 E-value=0.082 Score=48.32 Aligned_cols=109 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred hhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEE--EcCHHHHHHHHHhhhhhccccCCCCeEEEEc
Q 019550 89 FIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMC--DIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN 166 (339)
Q Consensus 89 ~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~V--Eid~~vi~~ar~~f~~~~~~~~~~rv~v~~~ 166 (339)
.+|.+-+-++|.....+.++||++|||.-+.-+.-.-....++|++| |+++++.++++ .++++++..
T Consensus 8 ~~~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-----------~~~i~~~~r 76 (223)
T PRK05562 8 DIYNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-----------YGNLKLIKG 76 (223)
T ss_pred HHhhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-----------CCCEEEEeC
Confidence 45666666678777777889999999987765432211224678877 88888776543 356777765
Q ss_pred cHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 167 DAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 167 D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+... ..-..+++|+....|+ +.-+. +.+..+.-|+++..+..
T Consensus 77 ~~~~---~dl~g~~LViaATdD~------------~vN~~-I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 77 NYDK---EFIKDKHLIVIATDDE------------KLNNK-IRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CCCh---HHhCCCcEEEECCCCH------------HHHHH-HHHHHHHcCCeEEEcCC
Confidence 4321 1114578888876654 22233 33344445777765543
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.87 E-value=0.06 Score=52.17 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=63.6
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+.++|+++|.| -|.++.++++..+ .+|++++++++-.+.|++.-. -.++..--.+.++...+.+|+||
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA----------d~~i~~~~~~~~~~~~~~~d~ii 234 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA----------DHVINSSDSDALEAVKEIADAII 234 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC----------cEEEEcCCchhhHHhHhhCcEEE
Confidence 46789999887 4557777777666 899999999999999998732 12222111222333334599999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.-.. +. .+-+ .-+.|+++|.+++-..
T Consensus 235 ~tv~-~~-----------~~~~--~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 235 DTVG-PA-----------TLEP--SLKALRRGGTLVLVGL 260 (339)
T ss_pred ECCC-hh-----------hHHH--HHHHHhcCCEEEEECC
Confidence 8877 42 2223 3468999999987643
No 262
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.74 E-value=0.074 Score=54.27 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=83.1
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC----CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh----cC
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS----LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK----RN 176 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~----~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~----~~ 176 (339)
...+|.+-.||+|++.....++.. ...+.+.|+++....+|+.++-+++.. . .+.+.++|-..-... ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--G-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC--c-cccccccccccCCcccccCCc
Confidence 345799999999998887776542 256899999999999999998766431 1 455666664332111 33
Q ss_pred CceeEEEecCCCC---CCC--------------C-ccccCCc-HHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHH
Q 019550 177 EKFDVIFGDLADP---VEG--------------G-PCYQLYT-KSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSI 237 (339)
Q Consensus 177 ~~yDvIi~D~~d~---~~~--------------~-p~~~L~t-~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i 237 (339)
++||.|+.+++.. +.. + +...--. ..|++. +...|+|+|...+-..+..++.. ..-..+
T Consensus 263 ~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h-~~~~l~~~g~aaivl~~gvlfr~-~~e~~I 340 (489)
T COG0286 263 GKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQH-ILYKLKPGGRAAIVLPDGVLFRG-GAEKDI 340 (489)
T ss_pred cceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHH-HHHhcCCCceEEEEecCCcCcCC-CchHHH
Confidence 6799999999853 110 1 1111111 578888 78899998844433211111222 234455
Q ss_pred HHHHHh
Q 019550 238 YNTIKQ 243 (339)
Q Consensus 238 ~~~l~~ 243 (339)
.+.+-+
T Consensus 341 R~~l~~ 346 (489)
T COG0286 341 RKDLLE 346 (489)
T ss_pred HHHHHh
Confidence 555554
No 263
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.74 E-value=0.1 Score=48.05 Aligned_cols=144 Identities=16% Similarity=0.259 Sum_probs=90.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHH----HHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQE----VVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RN 176 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~----vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~ 176 (339)
+...+||-||.+.|++...+...- |..-|.+||.++. ++.+|++ .+++--+++|++.--+- .-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk----------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK----------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc----------cCCceeeeccCCCchheeeee
Confidence 446789999999999998877642 3456899999864 4445544 47788889998743211 12
Q ss_pred CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC---chhhHHHHHHHHHhH-CCceEEEE
Q 019550 177 EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT---HKEVFSSIYNTIKQV-FKHVVAYT 252 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~---~~~~~~~i~~~l~~~-F~~v~~~~ 252 (339)
.-.|+|+.|...|.. ++-..-+ ++-.|+++|-+++..-++|... ....|..-.+.|++. +.-.. +
T Consensus 225 gmVDvIFaDvaqpdq--------~RivaLN-A~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~E--q 293 (317)
T KOG1596|consen 225 GMVDVIFADVAQPDQ--------ARIVALN-AQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKE--Q 293 (317)
T ss_pred eeEEEEeccCCCchh--------hhhhhhh-hhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchh--e
Confidence 468999999986642 1111223 4568999999988765554322 234566666777653 32111 1
Q ss_pred EeecccCCceeEEEEe
Q 019550 253 AHVPSFADTWGWVMAS 268 (339)
Q Consensus 253 ~~iP~~~~~~~~~~as 268 (339)
+....|.....++++-
T Consensus 294 vtLEP~erdha~VvG~ 309 (317)
T KOG1596|consen 294 VTLEPFERDHACVVGV 309 (317)
T ss_pred eccccccCCceEEEEE
Confidence 2233455556677764
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.71 E-value=0.036 Score=51.28 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=53.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+.|.+|+|||||--=++.-.....+...+.+.|||..++++...++... .+..++.+.|...- ..+...|+.+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-----~~~~~~~v~Dl~~~--~~~~~~DlaL 176 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-----GVPHDARVRDLLSD--PPKEPADLAL 176 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-----T-CEEEEEE-TTTS--HTTSEESEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-----CCCcceeEeeeecc--CCCCCcchhh
Confidence 5589999999998777765555556679999999999999999998765 47778888886432 2356789888
Q ss_pred ecCC
Q 019550 184 GDLA 187 (339)
Q Consensus 184 ~D~~ 187 (339)
+==.
T Consensus 177 llK~ 180 (251)
T PF07091_consen 177 LLKT 180 (251)
T ss_dssp EET-
T ss_pred HHHH
Confidence 7543
No 265
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.022 Score=49.34 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=66.2
Q ss_pred CCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH-HhcCCceeEEE
Q 019550 106 PKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDVIF 183 (339)
Q Consensus 106 p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l-~~~~~~yDvIi 183 (339)
.++||++|+| +|..+..++...+..+|..-|-+++.++-.++-...+. +..-.++.+..-+-.... .....+||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc-ccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 4789999999 45555666666778999999999999998887654331 112234433322221111 12236899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
..-.-=. .-+-....+. ++..|+|.|.-++.
T Consensus 109 aADClFf------dE~h~sLvdt-Ik~lL~p~g~Al~f 139 (201)
T KOG3201|consen 109 AADCLFF------DEHHESLVDT-IKSLLRPSGRALLF 139 (201)
T ss_pred eccchhH------HHHHHHHHHH-HHHHhCcccceeEe
Confidence 8543100 0012344555 78999999985554
No 266
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.68 E-value=0.0018 Score=58.34 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++...|-|+|||++.++..+.. .-.|.-.|+-.. +++ ++..|.. -+.-..+..|++|
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-----------------n~~--Vtacdia-~vPL~~~svDv~V 127 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-----------------NPR--VTACDIA-NVPLEDESVDVAV 127 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STT--EEES-TT-S-S--TT-EEEEE
T ss_pred CCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----------------CCC--EEEecCc-cCcCCCCceeEEE
Confidence 3445799999999999976432 234666665210 233 5556753 3444468899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.-+.--. . --.+|+++ +.|.|++||.|.+-
T Consensus 128 fcLSLMG---T----n~~~fi~E-A~RvLK~~G~L~IA 157 (219)
T PF05148_consen 128 FCLSLMG---T----NWPDFIRE-ANRVLKPGGILKIA 157 (219)
T ss_dssp EES---S---S-----HHHHHHH-HHHHEEEEEEEEEE
T ss_pred EEhhhhC---C----CcHHHHHH-HHheeccCcEEEEE
Confidence 9887321 0 12489999 89999999998764
No 267
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.66 E-value=0.026 Score=56.82 Aligned_cols=116 Identities=19% Similarity=0.278 Sum_probs=62.1
Q ss_pred hHHHHHhhh-hcc-cCCCCCeEEEEecchhHHHHHHHhcCCCCEEE--EEEcCHHHHHHHHHh-hhhhccccCCCCeEEE
Q 019550 90 IYHECLIHP-PLL-CHQNPKTVFIMGGGEGSAAREALKHKSLEKVV--MCDIDQEVVDFCRRF-LTVNQEAFCSKKLNLV 164 (339)
Q Consensus 90 ~Y~e~l~~~-~l~-~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~--~VEid~~vi~~ar~~-f~~~~~~~~~~rv~v~ 164 (339)
.|.+.|..+ ++. ....-+.+||+|||.|+++.+++.+ .+..+. .-|..+..++.|-+. ++.. +-+.
T Consensus 100 ~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~--------~~~~ 170 (506)
T PF03141_consen 100 HYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAM--------IGVL 170 (506)
T ss_pred HHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchh--------hhhh
Confidence 566555543 331 2234567999999999999999873 333222 223344455555433 1111 0000
Q ss_pred EccHHHHHHhcCCceeEEEecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 165 VNDAKAELEKRNEKFDVIFGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 165 ~~D~~~~l~~~~~~yDvIi~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
+.+-|.-....||+|=+.-. .++. +-..+ ++-+ +.|.|+|||.++.. ++|
T Consensus 171 ---~s~rLPfp~~~fDmvHcsrc~i~W~--~~~g~----~l~e-vdRvLRpGGyfv~S-~pp 221 (506)
T PF03141_consen 171 ---GSQRLPFPSNAFDMVHCSRCLIPWH--PNDGF----LLFE-VDRVLRPGGYFVLS-GPP 221 (506)
T ss_pred ---ccccccCCccchhhhhcccccccch--hcccc----eeeh-hhhhhccCceEEec-CCc
Confidence 01112223578999866544 2431 11112 2334 68999999999865 444
No 268
>PTZ00357 methyltransferase; Provisional
Probab=95.62 E-value=0.025 Score=58.90 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=68.1
Q ss_pred eEEEEecchhHHHHHHHhcC---C-CCEEEEEEcCHHHHHHHHHh---hh-hhcc-ccCCCCeEEEEccHHHHHHhc---
Q 019550 108 TVFIMGGGEGSAAREALKHK---S-LEKVVMCDIDQEVVDFCRRF---LT-VNQE-AFCSKKLNLVVNDAKAELEKR--- 175 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~---~-~~~v~~VEid~~vi~~ar~~---f~-~~~~-~~~~~rv~v~~~D~~~~l~~~--- 175 (339)
.|+++|+|=|-+...+++-. + ..+|.+||.+|..+...+.. .. +... ..-+.+|+++..|.|.+-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 48999999999887777532 1 25799999996633333222 22 2110 011468999999999983211
Q ss_pred -------CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCC----CcE
Q 019550 176 -------NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLND----NGI 217 (339)
Q Consensus 176 -------~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~----gGi 217 (339)
-++.|+||+.+--.. |- ++ .+.|.+.. +.+.||+ +||
T Consensus 783 s~~~P~~~gKaDIVVSELLGSF--GD-NE-LSPECLDG-aQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSL--GD-NE-LSPECLEA-FHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccc--cc-cc-CCHHHHHH-HHHhhhhhcccccc
Confidence 037999999886433 11 22 36788888 7888876 787
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.60 E-value=0.094 Score=46.57 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCeEEEEecchhHHHHHHHhcC-CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc----cHHHHHH---h-c
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK-SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN----DAKAELE---K-R 175 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~-~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~----D~~~~l~---~-~ 175 (339)
+..+||++|+.-|+....+.+.. |...|.+|||-.- ++. +.+.++.+ |-..+.+ . .
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~-------~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPP-------EGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCC-------CCcccccccccCCHHHHHHHHHhCC
Confidence 35689999999999988766643 7788999998321 111 22333333 3222211 1 2
Q ss_pred CCceeEEEecCCCCCCCCcc--ccCCcHH----HHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceE
Q 019550 176 NEKFDVIFGDLADPVEGGPC--YQLYTKS----FYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVV 249 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~--~~L~t~e----f~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~ 249 (339)
..+.|+|++|..... .|.. .+.-..+ .+.- .-..+.|+|.+++-. |.. +.-..+.+.|+++|..|.
T Consensus 134 ~r~VdvVlSDMapna-TGvr~~Dh~~~i~LC~s~l~~-al~~~~p~g~fvcK~-----w~g-~e~~~l~r~l~~~f~~Vk 205 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNA-TGVRIRDHYRSIELCDSALLF-ALTLLIPNGSFVCKL-----WDG-SEEALLQRRLQAVFTNVK 205 (232)
T ss_pred CCcccEEEeccCCCC-cCcchhhHHHHHHHHHHHHHH-hhhhcCCCcEEEEEE-----ecC-CchHHHHHHHHHHhhhcE
Confidence 478999999987321 1210 1111111 1111 235788999999863 322 234567789999999998
Q ss_pred EEEEeeccc--CC-ceeEEEEecC
Q 019550 250 AYTAHVPSF--AD-TWGWVMASDQ 270 (339)
Q Consensus 250 ~~~~~iP~~--~~-~~~~~~as~~ 270 (339)
... |.- ++ .-.+++|.+.
T Consensus 206 ~vK---P~Asr~eS~E~y~v~~~~ 226 (232)
T KOG4589|consen 206 KVK---PDASRDESAETYLVCLNF 226 (232)
T ss_pred eeC---Cccccccccceeeeeeec
Confidence 753 331 11 1236677553
No 270
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.52 E-value=0.064 Score=50.31 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=81.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvIi 183 (339)
..++|+++|--+-.....++... ..+|.+||||+..+....+.....+ -.+++.+.-|.++-+.+ ..++||+++
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g----~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELG----YNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhC----ccchhheeehhcccChHHHHhhCCeee
Confidence 36789999965555444444433 4789999999999999888765432 36688899998877644 358899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCC---cEEEEecCCCCccCchhhHHHHHHHHHhHCCce
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDN---GIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g---Gilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v 248 (339)
.|++.-. ++ -+-|+.. =-..|+.- |.+-+.... .+.+...++.+.|-.-|..|
T Consensus 227 TDPpeTi---~a----lk~FlgR-GI~tLkg~~~aGyfgiT~re----ssidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPETI---KA----LKLFLGR-GIATLKGEGCAGYFGITRRE----SSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhhH---HH----HHHHHhc-cHHHhcCCCccceEeeeecc----ccHHHHHHHHHHHHHhcCee
Confidence 9998532 11 1233333 23467766 566554321 12344556666666666644
No 271
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.51 E-value=0.013 Score=52.27 Aligned_cols=101 Identities=24% Similarity=0.269 Sum_probs=71.3
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
..++||++|.|+|..+...++ .+...|...|++|..+...+-+...+ .-.+.+...|..- .+..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~-aGA~~v~a~d~~P~~~~ai~lNa~an-----gv~i~~~~~d~~g----~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAAR-AGAAEVVAADIDPWLEQAIRLNAAAN-----GVSILFTHADLIG----SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHH-hhhHHHHhcCCChHHHHHhhcchhhc-----cceeEEeeccccC----CCcceeEEEe
Confidence 368999999999999998877 67889999999999999888876655 3457778777532 5678999876
Q ss_pred -cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 185 -DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 185 -D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
|.+-.. ..+. ..+. .+++|+..|.-++ .+.|
T Consensus 149 gDlfy~~--~~a~-----~l~~--~~~~l~~~g~~vl-vgdp 180 (218)
T COG3897 149 GDLFYNH--TEAD-----RLIP--WKDRLAEAGAAVL-VGDP 180 (218)
T ss_pred eceecCc--hHHH-----HHHH--HHHHHHhCCCEEE-EeCC
Confidence 555221 1111 2222 3566777886665 3444
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=95.33 E-value=0.046 Score=51.66 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=45.3
Q ss_pred CCCeEEEEccHHHHHHhc-CCceeEEEecCCCCCCC---Ccccc-------CCcHHHHHHHHccccCCCcEEEEecC
Q 019550 158 SKKLNLVVNDAKAELEKR-NEKFDVIFGDLADPVEG---GPCYQ-------LYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 158 ~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~d~~~~---~p~~~-------L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
....+++++|+.++++.. .+++|+|++|++-.... ..... -+..+++.. +.++|+|||.+++...
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDE-CHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHH-HHHHhCCCcEEEEEcC
Confidence 456689999999998664 46899999999732100 01000 012467888 7999999999988743
No 273
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.30 E-value=0.15 Score=47.74 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=61.1
Q ss_pred CCCeEEEEecc--hhHHHHHHHh-cCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH---HHh--c-
Q 019550 105 NPKTVFIMGGG--EGSAAREALK-HKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE---LEK--R- 175 (339)
Q Consensus 105 ~p~~VL~IG~G--~G~~~~~l~~-~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~---l~~--~- 175 (339)
.-+..|||||| +-....++++ ..|.++|..||.||.++.-+|.-+..+. ..+..++.+|.++- |.. .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~----~g~t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP----RGRTAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T----TSEEEEEE--TT-HHHHHCSHHHH
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC----CccEEEEeCCCCCHHHHhcCHHHH
Confidence 46789999999 3335566654 3578999999999999999998876431 12489999998863 221 1
Q ss_pred -----CCceeEEEecCCC--CCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 176 -----NEKFDVIFGDLAD--PVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 176 -----~~~yDvIi~D~~d--~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.+..-++++.... +....| ....+. +++.|.||..|++...
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D~~dp------~~iv~~-l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPDDDDP------AGIVAR-LRDALAPGSYLAISHA 191 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-CGCTH------HHHHHH-HHCCS-TT-EEEEEEE
T ss_pred hcCCCCCCeeeeeeeeeccCCCccCH------HHHHHH-HHHhCCCCceEEEEec
Confidence 1333455555431 110122 477888 7999999999988754
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.28 E-value=0.093 Score=47.55 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=70.8
Q ss_pred hHHHHHhhhhcccCCCCCeEEEEecchhHHHHHHH--hcCCCCEEEEEEcCHHHHHHHHHhhhhhcc-------------
Q 019550 90 IYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREAL--KHKSLEKVVMCDIDQEVVDFCRRFLTVNQE------------- 154 (339)
Q Consensus 90 ~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~--~~~~~~~v~~VEid~~vi~~ar~~f~~~~~------------- 154 (339)
+|++.|.+.+- ..|-.+-|-+||+|.++--+. +......|.+-|||++++++|++++.+...
T Consensus 39 i~qR~l~~l~~---~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~ 115 (246)
T PF11599_consen 39 IFQRALHYLEG---KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL 115 (246)
T ss_dssp HHHHHHCTSSS----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC---CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence 56666554332 467889999999999875544 323457899999999999999998753200
Q ss_pred ------------------------cc-CCCCeEEEEccHHHHHH----hcCCceeEEEecCCCC----CCCCccccCCcH
Q 019550 155 ------------------------AF-CSKKLNLVVNDAKAELE----KRNEKFDVIFGDLADP----VEGGPCYQLYTK 201 (339)
Q Consensus 155 ------------------------~~-~~~rv~v~~~D~~~~l~----~~~~~yDvIi~D~~d~----~~~~p~~~L~t~ 201 (339)
.. ......+...|..+.-. .....-|+||.|++-. |. ++...--..
T Consensus 116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~-g~~~~~p~~ 194 (246)
T PF11599_consen 116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQ-GEGSGGPVA 194 (246)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTT-S---HHHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccccc-CCCCCCcHH
Confidence 00 12335677777766422 1234579999999842 32 211111245
Q ss_pred HHHHHHHccccCCCcEEEE
Q 019550 202 SFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 202 ef~~~~~~~~L~~gGilv~ 220 (339)
.++.. +...|.++.|+++
T Consensus 195 ~ml~~-l~~vLp~~sVV~v 212 (246)
T PF11599_consen 195 QMLNS-LAPVLPERSVVAV 212 (246)
T ss_dssp HHHHH-HHCCS-TT-EEEE
T ss_pred HHHHH-HHhhCCCCcEEEE
Confidence 78888 7999977778877
No 275
>PHA01634 hypothetical protein
Probab=95.25 E-value=0.051 Score=45.24 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
-..++|++||++-|..+.+++. .++..|.++|.+|...+..++.+..+.- -|..+-.- +| ...=+.||+.+
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l-~GAK~Vva~E~~~kl~k~~een~k~nnI--~DK~v~~~-----eW-~~~Y~~~Di~~ 97 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLL-RGASFVVQYEKEEKLRKKWEEVCAYFNI--CDKAVMKG-----EW-NGEYEDVDIFV 97 (156)
T ss_pred ecCCEEEEecCCccchhhHHhh-cCccEEEEeccCHHHHHHHHHHhhhhee--eeceeecc-----cc-cccCCCcceEE
Confidence 4578999999999999999886 6899999999999999999998765421 01111111 11 12236799999
Q ss_pred ecCC
Q 019550 184 GDLA 187 (339)
Q Consensus 184 ~D~~ 187 (339)
+|.-
T Consensus 98 iDCe 101 (156)
T PHA01634 98 MDCE 101 (156)
T ss_pred EEcc
Confidence 9976
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.22 E-value=0.054 Score=48.66 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=80.5
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh----ccccCCCCeEEEEccHHHHHHhc--CCcee
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN----QEAFCSKKLNLVVNDAKAELEKR--NEKFD 180 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~----~~~~~~~rv~v~~~D~~~~l~~~--~~~yD 180 (339)
-...|||||=|++...++-.+|..-|.+.||--+|.+..++..... ...+ -+++.+....+..|+... .++-+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~-~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQ-YPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccc-cccceeeeccchhhccchhhhcccc
Confidence 4589999999999999998899999999999999999988876422 1111 567888999999988654 23444
Q ss_pred EEEecCCCCCC--CCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVE--GGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~--~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
=++.-.+||.- ......+.+...... +.-.|++||++.+-
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~e-yay~l~~gg~~yti 182 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSE-YAYVLREGGILYTI 182 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHH-HHhhhhcCceEEEE
Confidence 34444444321 011245556666776 56799999988764
No 277
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.21 E-value=0.17 Score=43.35 Aligned_cols=143 Identities=19% Similarity=0.248 Sum_probs=78.2
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh----hccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV----NQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~----~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+|.+||+|.++++....-.....+|+....+++.++..++.-.. +...+ .+++++ ..|..+.++ ..|+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l-~~~i~~-t~dl~~a~~----~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKL-PENIKA-TTDLEEALE----DADIII 74 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBE-ETTEEE-ESSHHHHHT----T-SEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCccc-Cccccc-ccCHHHHhC----cccEEE
Confidence 58999999888775544322347899999999888877664321 11001 235544 577666553 469999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccC----
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFA---- 259 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~---- 259 (339)
+-.+.. .-+++++. ++..|+++=.++.-... + .......+.+.+++.++........-|++.
T Consensus 75 iavPs~---------~~~~~~~~-l~~~l~~~~~ii~~~KG---~-~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~ 140 (157)
T PF01210_consen 75 IAVPSQ---------AHREVLEQ-LAPYLKKGQIIISATKG---F-EPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIA 140 (157)
T ss_dssp E-S-GG---------GHHHHHHH-HTTTSHTT-EEEETS-S---E-ETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHH
T ss_pred ecccHH---------HHHHHHHH-HhhccCCCCEEEEecCC---c-ccCCCccHHHHHHHHhhhcceEEeeCccHHHHHH
Confidence 987632 24689998 78899766666543321 1 111222233444555554323333457652
Q ss_pred --CceeEEEEecC
Q 019550 260 --DTWGWVMASDQ 270 (339)
Q Consensus 260 --~~~~~~~as~~ 270 (339)
..-.+++||++
T Consensus 141 ~~~pt~~~~as~~ 153 (157)
T PF01210_consen 141 EGKPTAVVIASKN 153 (157)
T ss_dssp TT--EEEEEEESS
T ss_pred cCCCeEEEEEecc
Confidence 12345677764
No 278
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.14 E-value=0.15 Score=49.01 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCceeE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yDv 181 (339)
...+||++|+| .|.++..+++-.++.+|.++|+++.-+++||+ |+...- ....+-. ..++.++-++.. ...+|+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT-DPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE-eeccccc-cHHHHHHHHHhhccccCCCe
Confidence 46789999999 46666667777899999999999999999999 543210 0011111 334444444433 245887
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
.+--.-.. .-++. +-..++.+|.+++
T Consensus 246 ~~dCsG~~------------~~~~a-ai~a~r~gGt~vl 271 (354)
T KOG0024|consen 246 TFDCSGAE------------VTIRA-AIKATRSGGTVVL 271 (354)
T ss_pred EEEccCch------------HHHHH-HHHHhccCCEEEE
Confidence 76544211 22344 4568999999554
No 279
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.1 Score=47.93 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=55.6
Q ss_pred HHHhhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH
Q 019550 93 ECLIHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL 172 (339)
Q Consensus 93 e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l 172 (339)
.++-+..+ ..+.+.+||||.-+|++.-.+++ .++.+|.+||..-.-+.-- + ..+||+.++..-=..++
T Consensus 69 ~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq-~gAk~VyavDVG~~Ql~~k-----L----R~d~rV~~~E~tN~r~l 136 (245)
T COG1189 69 KALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQ-RGAKHVYAVDVGYGQLHWK-----L----RNDPRVIVLERTNVRYL 136 (245)
T ss_pred HHHHhcCc--CCCCCEEEEecCCCccHHHHHHH-cCCcEEEEEEccCCccCHh-----H----hcCCcEEEEecCChhhC
Confidence 34444443 35678999999999999987777 6899999999854332211 1 13788877654333333
Q ss_pred Hh--cCCceeEEEecCC
Q 019550 173 EK--RNEKFDVIFGDLA 187 (339)
Q Consensus 173 ~~--~~~~yDvIi~D~~ 187 (339)
.. ..+..|+|++|.+
T Consensus 137 ~~~~~~~~~d~~v~DvS 153 (245)
T COG1189 137 TPEDFTEKPDLIVIDVS 153 (245)
T ss_pred CHHHcccCCCeEEEEee
Confidence 22 2357899999986
No 280
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.89 E-value=0.32 Score=45.91 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=89.7
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEecC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDL 186 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~ 186 (339)
+++++-+|.|++...+.+ .+..-+.++|+|+...+.-+.+++ .+..+|..+.-... ++..|+|+.-+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~-ag~~~~~a~e~~~~a~~~y~~N~~-----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQ-AGFEVVWAVEIDPDACETYKANFP-----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHH-TTEEEEEEEESSHHHHHHHHHHHT-----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHh-cCcEEEEEeecCHHHHHhhhhccc-----------ccccccccccccccccccceEEEecc
Confidence 689999999999887766 456778999999999999888864 57778876653221 11599999988
Q ss_pred CC-CCC-CC-------ccccCCcHHHHHHHHccccCCCcEEEEecCCCCccC--chhhHHHHHHHHHhHCCceEEEEEee
Q 019550 187 AD-PVE-GG-------PCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFT--HKEVFSSIYNTIKQVFKHVVAYTAHV 255 (339)
Q Consensus 187 ~d-~~~-~~-------p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~--~~~~~~~i~~~l~~~F~~v~~~~~~i 255 (339)
+- +.+ .+ +-..|+ .++++. + +.++|.-+++=|+.. +.. ....+..+.+.|.+..-.+.......
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~-~~~~~~-v-~~~~Pk~~~~ENV~~--l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna 144 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLF-FEFLRI-V-KELKPKYFLLENVPG--LLSSKNGEVFKEILEELEELGYNVQWRVLNA 144 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHH-HHHHHH-H-HHHS-SEEEEEEEGG--GGTGGGHHHHHHHHHHHHHTTEEEEEEEEEG
T ss_pred CCceEeccccccccccccchhh-HHHHHH-H-hhccceEEEecccce--eeccccccccccccccccccceeehhccccH
Confidence 62 111 01 112232 467775 4 578898777656521 121 22457788888887665555444444
Q ss_pred cccC----CceeEEEEecCC
Q 019550 256 PSFA----DTWGWVMASDQP 271 (339)
Q Consensus 256 P~~~----~~~~~~~as~~p 271 (339)
-.|| ..-.|++|++..
T Consensus 145 ~~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 145 ADYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp GGGTSSBE-EEEEEEEEEGG
T ss_pred hhCCCCCceeeEEEEEECCC
Confidence 4454 223478887653
No 281
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.65 E-value=0.026 Score=52.39 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=55.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
..-|.|+|||.+-++. +. ..+|...|+- ..+-+++..|.++ +....++.|+++.-
T Consensus 181 ~~vIaD~GCGEakiA~---~~--~~kV~SfDL~-------------------a~~~~V~~cDm~~-vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SE--RHKVHSFDLV-------------------AVNERVIACDMRN-VPLEDESVDVAVFC 235 (325)
T ss_pred ceEEEecccchhhhhh---cc--ccceeeeeee-------------------cCCCceeeccccC-CcCccCcccEEEee
Confidence 3458889999998886 11 1345555541 1233456667665 45556889999988
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.--. ..+ .+|+.. +.|+|++||.+.+-
T Consensus 236 LSLMg-----tn~--~df~kE-a~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 236 LSLMG-----TNL--ADFIKE-ANRILKPGGLLYIA 263 (325)
T ss_pred Hhhhc-----ccH--HHHHHH-HHHHhccCceEEEE
Confidence 76321 122 489999 89999999988764
No 282
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.58 E-value=0.74 Score=44.22 Aligned_cols=145 Identities=13% Similarity=0.146 Sum_probs=86.3
Q ss_pred EEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC
Q 019550 109 VFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 188 (339)
|+++.||.|++..-+.+ .+..-+.++|+|+..++..+.+++. +++.+|..+.-...-...|+|+..++-
T Consensus 1 vidLF~G~GG~~~Gl~~-aG~~~~~a~e~~~~a~~ty~~N~~~----------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ-AGFKCVFASEIDKYAQKTYEANFGN----------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHH-cCCeEEEEEeCCHHHHHHHHHhCCC----------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 57888998988876655 4555667899999999998888642 345678766543223468999998862
Q ss_pred -CCC-CC-------ccccCCcHHHHHHHHccccCCCcEEEEecCCCCcc--CchhhHHHHHHHHHhHCCceEEEEEeecc
Q 019550 189 -PVE-GG-------PCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIF--THKEVFSSIYNTIKQVFKHVVAYTAHVPS 257 (339)
Q Consensus 189 -~~~-~~-------p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~--~~~~~~~~i~~~l~~~F~~v~~~~~~iP~ 257 (339)
+.. .+ +-..| -.++++. + +.++|.=+++=|+ +.+. .....+..+.+.|+...-.+.........
T Consensus 70 q~fS~ag~~~~~~d~r~~L-~~~~~r~-i-~~~~P~~~v~ENV--~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~d 144 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTL-FFEIVRI-L-KEKKPKFFLLENV--KGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKD 144 (315)
T ss_pred cccchhcccCCCCCchhhH-HHHHHHH-H-hhcCCCEEEeecc--HHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHH
Confidence 111 01 11112 2466665 4 4678875554443 1111 12245677777777765555444333333
Q ss_pred cC----CceeEEEEec
Q 019550 258 FA----DTWGWVMASD 269 (339)
Q Consensus 258 ~~----~~~~~~~as~ 269 (339)
|| ..-.|++|++
T Consensus 145 yGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 145 FGVPQNRERIYIVGFR 160 (315)
T ss_pred CCCCCCccEEEEEEEe
Confidence 43 2234788876
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.57 E-value=0.28 Score=47.09 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++||++|+| -|..+.++++..+..+|++++.+++-.++++++ +... .++ . ...|..+.++. .+.+|+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~-vi~-~----~~~~~~~~~~~-~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADK-LVN-P----QNDDLDHYKAE-KGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcE-Eec-C----CcccHHHHhcc-CCCCCEEE
Confidence 35789999875 344556677777766899999999999999885 2110 000 0 01222233322 24589887
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
--... ...++. +.+.|+++|.++.-.
T Consensus 241 d~~G~------------~~~~~~-~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGH------------PSSINT-CLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCC------------HHHHHH-HHHHhhcCCEEEEEc
Confidence 44321 133555 567899999988653
No 284
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.51 E-value=0.44 Score=46.88 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=57.4
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+.+|++||+| .|..+...++..+. +|+++|.+++-.+.+.+.+.. .+.....+ .+.+...-..+|+||
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~--------~v~~~~~~-~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG--------RIHTRYSN-AYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc--------eeEeccCC-HHHHHHHHccCCEEE
Confidence 46789999998 44555555665664 799999998876655443321 12222222 222333235689999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
.-..-+. .+...+.+.+.++ .++++++++
T Consensus 236 ~a~~~~g--~~~p~lit~~~l~-----~mk~g~vIv 264 (370)
T TIGR00518 236 GAVLIPG--AKAPKLVSNSLVA-----QMKPGAVIV 264 (370)
T ss_pred EccccCC--CCCCcCcCHHHHh-----cCCCCCEEE
Confidence 8764322 1122466766554 367888765
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.44 E-value=0.037 Score=47.23 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=53.7
Q ss_pred HHHHHhhhhcccCCCC-CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHH
Q 019550 91 YHECLIHPPLLCHQNP-KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAK 169 (339)
Q Consensus 91 Y~e~l~~~~l~~~~~p-~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~ 169 (339)
-+|.+.++--+...++ .+.+|||.|+|.+...++++ +....++||++|-.+..+|-+.-..+. ..+.++.-.|..
T Consensus 57 tteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~---~k~trf~Rkdlw 132 (199)
T KOG4058|consen 57 TTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGC---AKSTRFRRKDLW 132 (199)
T ss_pred cHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhc---ccchhhhhhhhh
Confidence 3556666533333444 68999999999999988885 466789999999999999877543332 355666665654
Q ss_pred H
Q 019550 170 A 170 (339)
Q Consensus 170 ~ 170 (339)
.
T Consensus 133 K 133 (199)
T KOG4058|consen 133 K 133 (199)
T ss_pred h
Confidence 3
No 286
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.19 E-value=0.41 Score=49.00 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCeEEEEecchh-HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccC--------CCCeEEEEccHHH----H
Q 019550 105 NPKTVFIMGGGEG-SAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFC--------SKKLNLVVNDAKA----E 171 (339)
Q Consensus 105 ~p~~VL~IG~G~G-~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~--------~~rv~v~~~D~~~----~ 171 (339)
.+.+||++|+|.- ..+..+++..+ ..|+++|.+++..+.+++. +......+ +.-.+..-.|..+ -
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG-A~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG-AIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 4789999999854 55555666565 5699999999999988873 32110000 0001222222111 1
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
+.+.-+.+|+||.-.--|. .++..|.|++-. +.+|||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG--~~aP~Lit~emv-----~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPG--KPAPKLITEEMV-----DSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCC--CCCCeeehHHHH-----hhCCCCCEEE
Confidence 2222367999988774332 233467777643 4688888876
No 287
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.10 E-value=3.3 Score=39.36 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=55.8
Q ss_pred CeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 107 KTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+|.+||+|. +.+++.+.+.....+|++++.+++..+.+++. .. ... ...+..+.+ +..|+||+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~--------~~~-~~~~~~~~~----~~aDvVii 72 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GL--------GDR-VTTSAAEAV----KGADLVIL 72 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CC--------Cce-ecCCHHHHh----cCCCEEEE
Confidence 5799999985 34455454422124799999999887777653 11 011 122322222 45899999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
-.+... ..++++. +...++++.+++ ..+
T Consensus 73 avp~~~---------~~~v~~~-l~~~l~~~~iv~-dvg 100 (307)
T PRK07502 73 CVPVGA---------SGAVAAE-IAPHLKPGAIVT-DVG 100 (307)
T ss_pred CCCHHH---------HHHHHHH-HHhhCCCCCEEE-eCc
Confidence 887431 2466777 567788887654 443
No 288
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.83 E-value=1 Score=40.90 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCeEEEEecchh----HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHH-HHHHhcCCc
Q 019550 104 QNPKTVFIMGGGEG----SAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAK-AELEKRNEK 178 (339)
Q Consensus 104 ~~p~~VL~IG~G~G----~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~-~~l~~~~~~ 178 (339)
-+.+-++++.+++| +++..++.+....++++|-.|++-...+++.+..... .+-++++++|.. +.+... +.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~---~~~vEfvvg~~~e~~~~~~-~~ 115 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL---SDVVEFVVGEAPEEVMPGL-KG 115 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc---cccceEEecCCHHHHHhhc-cC
Confidence 35677888865543 4555555556678999999999988888888764432 355798999854 455554 67
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
.|++++|.-... +..++|+. + .++|.|.+++
T Consensus 116 iDF~vVDc~~~d--------~~~~vl~~-~--~~~~~GaVVV 146 (218)
T PF07279_consen 116 IDFVVVDCKRED--------FAARVLRA-A--KLSPRGAVVV 146 (218)
T ss_pred CCEEEEeCCchh--------HHHHHHHH-h--ccCCCceEEE
Confidence 999999986321 23466675 3 3777775544
No 289
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=93.77 E-value=0.21 Score=52.50 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=95.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEE---EEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH-------------
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVV---MCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA------------- 168 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~---~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~------------- 168 (339)
.++.+|..|=|+|++...+++.+|..++. ..|++..++.-+.-.=|-.-.+..+.+-+.+..|-
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~~~T 401 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKSRCVNLDTCWEHPSDLSDPET 401 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccceeecchhhhcCccccCCccH
Confidence 46789999999999999999999888775 55666555443322211100011122333333221
Q ss_pred HHHHHh----cCCceeEEEecCC--CCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHH
Q 019550 169 KAELEK----RNEKFDVIFGDLA--DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIK 242 (339)
Q Consensus 169 ~~~l~~----~~~~yDvIi~D~~--d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~ 242 (339)
.+|... ..-++|+|++|.- |.. .. .....-.-+. +.+.|.++|.++.-+--..+ ...-..+...+.
T Consensus 402 W~YF~~l~~~~~~~idLiv~DmEV~d~~---~~-~kIe~~l~~~-~~~ll~~~gtLIfKTYlt~l---~~~~~~il~~lg 473 (675)
T PF14314_consen 402 WKYFVSLKKQHNLSIDLIVMDMEVRDDS---II-RKIEDNLRDY-VHSLLEEPGTLIFKTYLTRL---LSPDYNILDLLG 473 (675)
T ss_pred HHHHHHHHhhcCCcccEEEEeceecChH---HH-HHHHHHHHHH-HHHhcCCCcEEEEehhHhhh---hcchhhHHHHHH
Confidence 233332 2467999999985 221 10 1111112222 45678999999987521101 112235888999
Q ss_pred hHCCceEEEEEeecccCCceeEEEEecC---C--CCCCHHHHHHHHH
Q 019550 243 QVFKHVVAYTAHVPSFADTWGWVMASDQ---P--FSINAEEIDNRIK 284 (339)
Q Consensus 243 ~~F~~v~~~~~~iP~~~~~~~~~~as~~---p--~~~~~~~l~~r~~ 284 (339)
..|+.|..+.+...+--..-.++++++. + .-++...+.+...
T Consensus 474 ~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~~~~~~~~~~l~~~~~ 520 (675)
T PF14314_consen 474 RYFKSVELVQTQFSSSFTSEVYLVFQKLKKFPDRPYVDWSSLQEMWK 520 (675)
T ss_pred hhcCceEEEECCCCCCCceEEEEEEecccCCCCcCCCCHHHHHHHHH
Confidence 9999999887654332112235777643 1 1145566654443
No 290
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.72 E-value=1.3 Score=44.40 Aligned_cols=130 Identities=14% Similarity=0.173 Sum_probs=67.5
Q ss_pred CCCeEEEEecchhHH-HHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSA-AREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++|+++|+|.-+. ....++..+ .+|+++|+|+.-...+... + +++. +..+.+ +..|+||
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~G-a~ViV~d~dp~ra~~A~~~-G----------~~v~--~l~eal----~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLG-ARVIVTEVDPICALQAAMD-G----------FRVM--TMEEAA----ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCchhhHHHHhc-C----------CEec--CHHHHH----hCCCEEE
Confidence 467999999985443 333445455 4899999998654433321 1 1111 222222 3589987
Q ss_pred ecCCCCCCCCccccCCcHHHHH-HHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecccCCce
Q 019550 184 GDLADPVEGGPCYQLYTKSFYE-RILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTW 262 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~-~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~~~~~~ 262 (339)
..... ...+. . ..+.+++|++++ |.++.........+.+....-+++-|++..|.. |. +..
T Consensus 273 ~aTG~------------~~vI~~~-~~~~mK~Gaili-NvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~--~~--g~~ 334 (425)
T PRK05476 273 TATGN------------KDVITAE-HMEAMKDGAILA-NIGHFDNEIDVAALEELAVKWREIKPQVDEYTL--PD--GKR 334 (425)
T ss_pred ECCCC------------HHHHHHH-HHhcCCCCCEEE-EcCCCCCccChHHHhhcCcceeecCCCceEEEe--CC--CCE
Confidence 64321 12232 2 345688887765 666542111222222222233455678877763 32 333
Q ss_pred eEEEEecC
Q 019550 263 GWVMASDQ 270 (339)
Q Consensus 263 ~~~~as~~ 270 (339)
.++++..+
T Consensus 335 i~lLa~Gr 342 (425)
T PRK05476 335 IILLAEGR 342 (425)
T ss_pred EEEEeCCc
Confidence 45555443
No 291
>PRK13699 putative methylase; Provisional
Probab=93.64 E-value=0.11 Score=47.54 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=42.3
Q ss_pred eEEEEccHHHHHHhc-CCceeEEEecCCCCCC----CC-cc-cc---CCcHHHHHHHHccccCCCcEEEEec
Q 019550 161 LNLVVNDAKAELEKR-NEKFDVIFGDLADPVE----GG-PC-YQ---LYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 161 v~v~~~D~~~~l~~~-~~~yDvIi~D~~d~~~----~~-p~-~~---L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.+++.+|+++.++.. .++.|+||.|||-... .+ .. .. -+..+++++ ++++|||||.+++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E-~~RVLKpgg~l~if~ 72 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNE-MYRVLKKDALMVSFY 72 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHH-HHHHcCCCCEEEEEe
Confidence 368999999999775 5889999999984310 01 00 01 112466777 789999999988754
No 292
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.56 E-value=0.63 Score=47.06 Aligned_cols=101 Identities=15% Similarity=0.248 Sum_probs=59.3
Q ss_pred hhhhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEE--EcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH
Q 019550 96 IHPPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMC--DIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE 173 (339)
Q Consensus 96 ~~~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~V--Eid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~ 173 (339)
.+.|++..-+.++||++|+|.=+.-+.-.-....++|++| |+++++-++++ ..+++++..+.. .
T Consensus 2 ~~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~-----------~~~i~~~~~~~~---~ 67 (457)
T PRK10637 2 DHLPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWAD-----------AGMLTLVEGPFD---E 67 (457)
T ss_pred CeeceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHh-----------CCCEEEEeCCCC---h
Confidence 3467776678899999999977665332211224678877 66677655432 356777665432 1
Q ss_pred hcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 174 KRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 174 ~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
..-..+++|+....|+. .....++. .+..|+++-...
T Consensus 68 ~dl~~~~lv~~at~d~~--------~n~~i~~~-----a~~~~~lvN~~d 104 (457)
T PRK10637 68 SLLDTCWLAIAATDDDA--------VNQRVSEA-----AEARRIFCNVVD 104 (457)
T ss_pred HHhCCCEEEEECCCCHH--------HhHHHHHH-----HHHcCcEEEECC
Confidence 11245788888766542 12344444 344588874443
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.30 E-value=0.42 Score=48.18 Aligned_cols=105 Identities=15% Similarity=0.194 Sum_probs=69.9
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
++|.+|||.--+...+-+ -+...|+.+|+|+.+++.....-.. +.+-.++...|... +.-..+.||+||--.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~~-----~~~~~~~~~~d~~~-l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNAK-----ERPEMQMVEMDMDQ-LVFEDESFDIVIDKGT 123 (482)
T ss_pred eeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhcccc-----CCcceEEEEecchh-ccCCCcceeEEEecCc
Confidence 799999999887776665 5678999999999999876654321 24677888888644 2234688999887554
Q ss_pred CCCCCCccccCC----cHHHHHHHHccccCCCcEEEE
Q 019550 188 DPVEGGPCYQLY----TKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 188 d~~~~~p~~~L~----t~ef~~~~~~~~L~~gGilv~ 220 (339)
...-......++ -...+.. +.+.|+++|+++.
T Consensus 124 lDal~~de~a~~~~~~v~~~~~e-Vsrvl~~~gk~~s 159 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDE-VSRVLAPGGKYIS 159 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhh-HHHHhccCCEEEE
Confidence 211001111122 2244556 6899999998654
No 294
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.28 E-value=0.6 Score=45.75 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=66.6
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc-cHHHHHHhc--CCcee
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN-DAKAELEKR--NEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~-D~~~~l~~~--~~~yD 180 (339)
+..+||++|+|. |..+..+++..+..++++++.+++..+.++++... ..+..... +..+.+... .+.+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~-------~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA-------ETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc-------EEEcCCcchHHHHHHHHHcCCCCCC
Confidence 457899999887 77888888877766799999999999999987421 11111122 133333322 24699
Q ss_pred EEEecCCCCCCCCcccc---------CCcHHHHHHHHccccCCCcEEEEec
Q 019550 181 VIFGDLADPVEGGPCYQ---------LYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~---------L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+|+--........+..+ --+...++. +.+.|+++|.++.-.
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALRE-AIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHH-HHHHhccCCEEEEEc
Confidence 88764321100000000 012345566 567899999987653
No 295
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.25 E-value=0.077 Score=52.67 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=53.8
Q ss_pred eEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEEEecC
Q 019550 108 TVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDL 186 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~ 186 (339)
-||+||.|+|.+...+.+ .++.+|+++|.=..|.++||+-...+.- ..+++++..---+ +..- ..+-|+++...
T Consensus 69 ~vLdigtGTGLLSmMAvr-agaD~vtA~EvfkPM~d~arkI~~kng~---SdkI~vInkrSte-v~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVR-AGADSVTACEVFKPMVDLARKIMHKNGM---SDKINVINKRSTE-VKVGGSSRADIAVRED 143 (636)
T ss_pred EEEEccCCccHHHHHHHH-hcCCeEEeehhhchHHHHHHHHHhcCCC---ccceeeeccccce-eeecCcchhhhhhHhh
Confidence 489999999999998887 4678899999999999999998765432 4566666532111 1110 13467777766
Q ss_pred CCC
Q 019550 187 ADP 189 (339)
Q Consensus 187 ~d~ 189 (339)
+|.
T Consensus 144 fdt 146 (636)
T KOG1501|consen 144 FDT 146 (636)
T ss_pred hhh
Confidence 653
No 296
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.18 E-value=0.85 Score=43.72 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.|.+|.+||+|- |.-+.-++--. .+.|+..|+|..=++.....| ..|++.+......+ +..-.++|+||
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f--------~~rv~~~~st~~~i-ee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLF--------GGRVHTLYSTPSNI-EEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhh--------CceeEEEEcCHHHH-HHHhhhccEEE
Confidence 467899999883 44444444433 478999999988877766655 36788888776554 44447899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
.-.--|... +..|.++|. -+.|+||.+++
T Consensus 237 gaVLIpgak--aPkLvt~e~-----vk~MkpGsViv 265 (371)
T COG0686 237 GAVLIPGAK--APKLVTREM-----VKQMKPGSVIV 265 (371)
T ss_pred EEEEecCCC--CceehhHHH-----HHhcCCCcEEE
Confidence 876544322 236766653 34688999886
No 297
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=93.04 E-value=0.077 Score=48.25 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=47.4
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~ 171 (339)
.-|..||-|-|++.+.++. .+.+++.+||+|+..+.-.+---+.. +.++.++++|+..|
T Consensus 52 ~~v~eIgPgpggitR~il~-a~~~RL~vVE~D~RFip~LQ~L~EAa-----~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILN-ADVARLLVVEKDTRFIPGLQMLSEAA-----PGKLRIHHGDVLRF 110 (326)
T ss_pred ceeEEecCCCCchhHHHHh-cchhheeeeeeccccChHHHHHhhcC-----CcceEEecccccee
Confidence 3588999999999999997 56889999999999887655433321 56899999998765
No 298
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.03 E-value=0.043 Score=49.41 Aligned_cols=94 Identities=22% Similarity=0.345 Sum_probs=61.6
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..|.++||||+|+|-+...++-+ .++|.+-|++..|....++. +.+++.. .+++ +++-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk-----------~ynVl~~--~ew~-~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK-----------NYNVLTE--IEWL-QTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc-----------CCceeee--hhhh-hcCceeehHH
Confidence 45789999999999999877654 46788999999998765542 2233322 3444 3456799997
Q ss_pred e-cCCCCCCCCccccCCcHHHHHHHHccccCC-CcEEEEe
Q 019550 184 G-DLADPVEGGPCYQLYTKSFYERILKPKLND-NGIFVTQ 221 (339)
Q Consensus 184 ~-D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~-gGilv~~ 221 (339)
+ +.-|.- ..| -..++. ++..|+| +|.+++.
T Consensus 175 clNlLDRc-~~p------~kLL~D-i~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLDRC-FDP------FKLLED-IHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHHhh-cCh------HHHHHH-HHHHhccCCCcEEEE
Confidence 6 222211 012 145677 6888999 8866543
No 299
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.77 E-value=1.1 Score=41.75 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cCCceeE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~yDv 181 (339)
..++||++|+| -|.++..+++..+..+|++++.+++-.++++++-... .+ +. .+..+.+.. ....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~--~i-~~------~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA--LA-EP------EVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE--ec-Cc------hhhHHHHHHHhCCCCCCE
Confidence 45689999875 3445566677777666999999999888888752110 00 11 111122222 1246998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+--...+ ..++. +.+.|+++|.++.-.
T Consensus 191 vid~~G~~------------~~~~~-~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGAT------------AAVRA-CLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCCh------------HHHHH-HHHHhcCCCEEEEec
Confidence 87533211 33455 567899999988654
No 300
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.70 E-value=0.38 Score=47.73 Aligned_cols=67 Identities=21% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCC-eEEEEccHHHHHHhc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKK-LNLVVNDAKAELEKR 175 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~r-v~v~~~D~~~~l~~~ 175 (339)
..+.-|.|+.||.|-++.-+++. .++|++-|++|++++..+.+.+.+.. +|. ++++..||..||++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv---~~~~iei~Nmda~~Flr~e 315 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV---DPSAIEIFNMDAKDFLRQE 315 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc---chhheeeecccHHHHhhcC
Confidence 34667889999999999887763 38999999999999999999988754 455 999999999999743
No 301
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.60 E-value=0.74 Score=44.35 Aligned_cols=94 Identities=19% Similarity=0.315 Sum_probs=56.6
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEc---CHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCcee
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDI---DQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEi---d~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yD 180 (339)
..++||++|+|+ |.++..+++..+. +|++++. +++-.+.++++-... +.....|..+ .. ....+|
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~--------v~~~~~~~~~-~~-~~~~~d 240 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY--------VNSSKTPVAE-VK-LVGEFD 240 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE--------ecCCccchhh-hh-hcCCCC
Confidence 467899999864 5566777777765 7999986 677778887642110 1000111111 11 235689
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+||--...+ ..+.. +.+.|+++|.+++-.
T Consensus 241 ~vid~~g~~------------~~~~~-~~~~l~~~G~~v~~G 269 (355)
T cd08230 241 LIIEATGVP------------PLAFE-ALPALAPNGVVILFG 269 (355)
T ss_pred EEEECcCCH------------HHHHH-HHHHccCCcEEEEEe
Confidence 777654311 34555 567899999987643
No 302
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.60 E-value=0.76 Score=37.25 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=60.2
Q ss_pred chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-C-CceeEEEecCCCCCCC
Q 019550 115 GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-N-EKFDVIFGDLADPVEG 192 (339)
Q Consensus 115 G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~-~~yDvIi~D~~d~~~~ 192 (339)
|-|..+..++++.+ .+|++++.+++-.+.++++-...- +.....|..+.++.. . +.+|+||--...
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~-------~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHV-------IDYSDDDFVEQIRELTGGRGVDVVIDCVGS---- 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEE-------EETTTSSHHHHHHHHTTTSSEEEEEESSSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccccc-------ccccccccccccccccccccceEEEEecCc----
Confidence 46888889999888 899999999999999998742110 111112245555543 3 479998876541
Q ss_pred CccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 193 GPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 193 ~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.+.++. +-+.|+++|.+++-.
T Consensus 69 --------~~~~~~-~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 --------GDTLQE-AIKLLRPGGRIVVVG 89 (130)
T ss_dssp --------HHHHHH-HHHHEEEEEEEEEES
T ss_pred --------HHHHHH-HHHHhccCCEEEEEE
Confidence 255666 678999999998754
No 303
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=92.52 E-value=0.75 Score=42.88 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=76.1
Q ss_pred hhHHHHHhhhhc--ccCCCCCeEEEEecch--hHHH-HHHH-hcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCe
Q 019550 89 FIYHECLIHPPL--LCHQNPKTVFIMGGGE--GSAA-REAL-KHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKL 161 (339)
Q Consensus 89 ~~Y~e~l~~~~l--~~~~~p~~VL~IG~G~--G~~~-~~l~-~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv 161 (339)
..|+++...+-- +..|..-+||.+|.|+ |..+ ..++ +..| .+-++-.||++-| ++.-
T Consensus 43 ~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v----------------SDa~ 106 (299)
T PF06460_consen 43 AKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV----------------SDAD 106 (299)
T ss_dssp HHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSS
T ss_pred HHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc----------------cccC
Confidence 457776554422 2235567899999984 2221 1222 3333 4445556664332 2233
Q ss_pred EEEEccHHHHHHhcCCceeEEEecCCCCCCCCc-cccCCcHHHHHH---HHccccCCCcEEEEecC-CCCccCchhhHHH
Q 019550 162 NLVVNDAKAELEKRNEKFDVIFGDLADPVEGGP-CYQLYTKSFYER---ILKPKLNDNGIFVTQAG-PAGIFTHKEVFSS 236 (339)
Q Consensus 162 ~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p-~~~L~t~ef~~~---~~~~~L~~gGilv~~~~-~~~~~~~~~~~~~ 236 (339)
..+.+|.+.+. .+.++|+||+|..|+..... ....-...||.. ++++.|+-||.+++-.. +. | ..
T Consensus 107 ~~~~~Dc~t~~--~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S--w------~~ 176 (299)
T PF06460_consen 107 QSIVGDCRTYM--PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS--W------NA 176 (299)
T ss_dssp EEEES-GGGEE--ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS----------H
T ss_pred CceeccccccC--CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc--c------cH
Confidence 56778887663 46899999999997542111 011112233332 25789999999988652 21 2 12
Q ss_pred HHHHHHhHCCceEEEEEeecccCCceeEEEEecC------CCCCCHHHHHHH
Q 019550 237 IYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQ------PFSINAEEIDNR 282 (339)
Q Consensus 237 i~~~l~~~F~~v~~~~~~iP~~~~~~~~~~as~~------p~~~~~~~l~~r 282 (339)
-+-.|...|.....|.+.+-+ ...-.|+++-+. -..++-..+.++
T Consensus 177 ~Lyel~~~F~~wt~FcT~VNt-SSSEaFLigiNYLg~~~~~~~IdG~~mHAn 227 (299)
T PF06460_consen 177 QLYELMGYFSWWTCFCTAVNT-SSSEAFLIGINYLGKFSEGEIIDGNVMHAN 227 (299)
T ss_dssp HHHHHHTTEEEEEEEEEGGGT-TSS-EEEEEEEE-SS---SS---HHHHHHH
T ss_pred HHHHHHhhcccEEEEecccCc-cccceeEEeeeccCccccccccchHHHHHH
Confidence 234556678877777765543 223456666421 123566666655
No 304
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.44 E-value=0.17 Score=49.09 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.|+++||+|.|-|+.+..+-...| -.+++.+|.+|.+-++...--......-.+-|..=+..|- .-|. ....|++||
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dR-l~lp-~ad~ytl~i 190 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDR-LSLP-AADLYTLAI 190 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhc-cCCC-ccceeehhh
Confidence 488999999999887765555444 3678999999987665443221111001123333333341 1111 135688877
Q ss_pred ecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe-cCCC
Q 019550 184 GDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ-AGPA 225 (339)
Q Consensus 184 ~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~-~~~~ 225 (339)
+--- -|. +....++ ..++. +...++|||.||+- -|.|
T Consensus 191 ~~~eLl~d--~~ek~i~--~~ie~-lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 191 VLDELLPD--GNEKPIQ--VNIER-LWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhccc--cCcchHH--HHHHH-HHHhccCCCeEEEEeCCCc
Confidence 6331 121 1111222 36677 67899999988764 3444
No 305
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.42 E-value=3.5 Score=41.17 Aligned_cols=117 Identities=12% Similarity=0.109 Sum_probs=61.9
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++|+++|+|.=+ .....++..+ .+|+++|.||.-...++.. + .++. +..+.+ +..|+||
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~G-a~ViV~d~dp~r~~~A~~~-G----------~~v~--~leeal----~~aDVVI 255 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMG-ARVIVTEVDPIRALEAAMD-G----------FRVM--TMEEAA----KIGDIFI 255 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCc-CEEEEEeCChhhHHHHHhc-C----------CEeC--CHHHHH----hcCCEEE
Confidence 46799999999644 3344555555 5899999999654333321 1 1111 222222 3479987
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYT 252 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~ 252 (339)
.-... ..+.+.+ ....+++|++++ |.+......+.+.+.+....-+.+-+++..|.
T Consensus 256 taTG~-------~~vI~~~-----~~~~mK~Gaili-N~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 256 TATGN-------KDVIRGE-----HFENMKDGAIVA-NIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred ECCCC-------HHHHHHH-----HHhcCCCCcEEE-EECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 63221 1222222 235688888775 55543211223333333333344567777765
No 306
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.38 E-value=1 Score=41.83 Aligned_cols=123 Identities=11% Similarity=0.159 Sum_probs=69.1
Q ss_pred EEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeEEEecC
Q 019550 110 FIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDVIFGDL 186 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDvIi~D~ 186 (339)
|..=.|+=.+++.+++ +..+..++|+.|.-.+..+++|.. +++++++..||.+-+... .++==+|++|+
T Consensus 62 l~~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~------~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRR------DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--T------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhcc------CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 5555678888888876 457899999999999999888754 579999999999987653 35567999999
Q ss_pred CCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhH-CCceE
Q 019550 187 ADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQV-FKHVV 249 (339)
Q Consensus 187 ~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~-F~~v~ 249 (339)
+-.. ....---.+.+.. +.++- +.|+++++.. .........+.+.|++. .+.+.
T Consensus 134 pYE~---~~dy~~v~~~l~~-a~kR~-~~G~~~iWYP----i~~~~~~~~~~~~l~~~~~~~~l 188 (245)
T PF04378_consen 134 PYEQ---KDDYQRVVDALAK-ALKRW-PTGVYAIWYP----IKDRERVDRFLRALKALGIKKVL 188 (245)
T ss_dssp ---S---TTHHHHHHHHHHH-HHHH--TTSEEEEEEE----ESSHHHHHHHHHHHHHH-SSE-E
T ss_pred CCCC---chHHHHHHHHHHH-HHHhc-CCcEEEEEee----cccHHHHHHHHHHHHhcCCCCeE
Confidence 7332 1000001122333 22232 5899988752 33555677788888765 34443
No 307
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=92.38 E-value=0.89 Score=44.39 Aligned_cols=116 Identities=24% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCCeEEEEecchhHHHHHHHh--cCC--CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH----H---
Q 019550 104 QNPKTVFIMGGGEGSAAREALK--HKS--LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE----L--- 172 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~--~~~--~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~----l--- 172 (339)
.+..+|||+++.-|+=...+++ |.. ...|++-|.|+.=+...+.-.... .++.+.+...|+-.+ +
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL----PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc----CCcceeeecccceeccccccccC
Confidence 3467899999998887766665 222 237999999988666555443321 134455544444322 1
Q ss_pred -HhcCCceeEEEecCCCCCCC----Cc-----------cccC--CcHHHHHHHHccccCCCcEEEEecCC
Q 019550 173 -EKRNEKFDVIFGDLADPVEG----GP-----------CYQL--YTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 173 -~~~~~~yDvIi~D~~d~~~~----~p-----------~~~L--~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
......||-|++|.+-..++ .+ +..| .....+.. .-+.|++||.+|-.+.|
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~r-gl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRR-GLRLLKVGGRLVYSTCS 298 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHH-HHHHhcCCCEEEEeccC
Confidence 11235799999999721110 00 0011 12244555 45799999999876654
No 308
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.36 E-value=2.5 Score=37.34 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=57.5
Q ss_pred eEEEEecchh--HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhh-hhhc--------cccCCCCeEEEEccHHHHHHhcC
Q 019550 108 TVFIMGGGEG--SAAREALKHKSLEKVVMCDIDQEVVDFCRRFL-TVNQ--------EAFCSKKLNLVVNDAKAELEKRN 176 (339)
Q Consensus 108 ~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f-~~~~--------~~~~~~rv~v~~~D~~~~l~~~~ 176 (339)
+|-++|+|== .++..+++ .+ -+|+++|+|++.++..++-. +... ......|+++. .|..+.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~-~G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~--- 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE-KG-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIK--- 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH-TT-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHH---
T ss_pred EEEEECCCcchHHHHHHHHh-CC-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhh---
Confidence 6889999933 33444444 43 68999999999998877532 1111 01113455433 44444343
Q ss_pred CceeEEEecCCCCCCC-CccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 177 EKFDVIFGDLADPVEG-GPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 177 ~~yDvIi~D~~d~~~~-~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
..|++++..+.|... +.+..-+-....+. +.+.|+++-++++.+..|
T Consensus 76 -~adv~~I~VpTP~~~~~~~Dls~v~~a~~~-i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 76 -DADVVFICVPTPSDEDGSPDLSYVESAIES-IAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp -H-SEEEE----EBETTTSBETHHHHHHHHH-HHHHHCSCEEEEESSSSS
T ss_pred -ccceEEEecCCCccccCCccHHHHHHHHHH-HHHHHhhcceEEEccEEE
Confidence 479999888754321 22222233455666 678899988888876533
No 309
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=92.27 E-value=0.67 Score=41.51 Aligned_cols=34 Identities=32% Similarity=0.437 Sum_probs=24.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 138 (339)
..++||++|+|+ |+.....+...+..+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 457899999984 4433334444688899999988
No 310
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.26 E-value=0.87 Score=39.56 Aligned_cols=90 Identities=18% Similarity=0.310 Sum_probs=46.1
Q ss_pred CCCeEEEEecchhHHHH-HHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAR-EALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~-~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++++++|-|.-+-+. ..++-. ..+|+++|+|| +.+.+.... .+++. . +.+.-+..|+|+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DP--i~alqA~~d---------Gf~v~--~----~~~a~~~adi~v 83 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGL-GARVTVTEIDP--IRALQAAMD---------GFEVM--T----LEEALRDADIFV 83 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSH--HHHHHHHHT---------T-EEE-------HHHHTTT-SEEE
T ss_pred CCCEEEEeCCCcccHHHHHHHhhC-CCEEEEEECCh--HHHHHhhhc---------CcEec--C----HHHHHhhCCEEE
Confidence 46899999998544332 222324 47999999999 334443321 22332 1 222235679888
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
.---. ....+.+.|+. |+ +|.++.|.++.
T Consensus 84 taTG~-------~~vi~~e~~~~-----mk-dgail~n~Gh~ 112 (162)
T PF00670_consen 84 TATGN-------KDVITGEHFRQ-----MK-DGAILANAGHF 112 (162)
T ss_dssp E-SSS-------SSSB-HHHHHH-----S--TTEEEEESSSS
T ss_pred ECCCC-------ccccCHHHHHH-----hc-CCeEEeccCcC
Confidence 76432 13346676665 44 67777898764
No 311
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.19 E-value=0.95 Score=43.71 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=60.2
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-C-CceeE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-N-EKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~-~~yDv 181 (339)
..++||+.|+|. |..+.++++..+..+|++++.+++-.+.++++ +.. .-+.....|..+.+... . ..+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF-GAT------HTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 467899998753 44556677777766799999999988888764 211 11111223444444332 2 45898
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+ |... ++ +.++. +.+.|+++|.+++-.
T Consensus 249 vi-d~~g----~~-------~~~~~-~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VI-DAVG----RP-------ETYKQ-AFYARDLAGTVVLVG 276 (358)
T ss_pred EE-ECCC----CH-------HHHHH-HHHHhccCCEEEEEC
Confidence 87 4331 11 33455 456899999988643
No 312
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=91.85 E-value=0.28 Score=41.88 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=58.1
Q ss_pred hhcccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh---
Q 019550 98 PPLLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--- 174 (339)
Q Consensus 98 ~~l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--- 174 (339)
+......-+..||++|.|.|.+=-.+....|..+|.+.|-. +.. | +.+ ..|.-+++.+|+++-+..
T Consensus 21 a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~---l~~---h---p~~--~P~~~~~ilGdi~~tl~~~~~ 89 (160)
T PF12692_consen 21 AAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA---LAC---H---PSS--TPPEEDLILGDIRETLPALAR 89 (160)
T ss_dssp HHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS-----S-------GGG-----GGGEEES-HHHHHHHHHH
T ss_pred HHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee---ccc---C---CCC--CCchHheeeccHHHHhHHHHh
Confidence 33333344678999999999999999988999999999872 221 1 111 124457899999988765
Q ss_pred cCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEE
Q 019550 175 RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 175 ~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
...+.-++=.|.-... +.....+...+.-++...|.+||+++-
T Consensus 90 ~g~~a~laHaD~G~g~---~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 90 FGAGAALAHADIGTGD---KEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp H-S-EEEEEE----S----HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred cCCceEEEEeecCCCC---cchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 2345556666664332 112222333344346789999999874
No 313
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.78 E-value=0.77 Score=43.48 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++||++|+| -|.++..+++..+...|.+++.+++-++.++.+... ++. + .....+|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i------~~~---------~---~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL------DPE---------K---DPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc------Chh---------h---ccCCCCCEEE
Confidence 45689999965 455667778878877788889988777766653111 010 0 0134689877
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
-.... + ..++. +-+.|+++|.+++-
T Consensus 206 d~~G~-----~-------~~~~~-~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 206 DASGD-----P-------SLIDT-LVRRLAKGGEIVLA 230 (308)
T ss_pred ECCCC-----H-------HHHHH-HHHhhhcCcEEEEE
Confidence 43321 1 33455 56789999998864
No 314
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.68 E-value=0.42 Score=41.40 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccc-c--CCCCeEEEEccHHHH---------
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEA-F--CSKKLNLVVNDAKAE--------- 171 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~-~--~~~rv~v~~~D~~~~--------- 171 (339)
.|.+|+++|.|. |.-+.++++..+ .+++..|..++..+..+..+...-.. . ...+-. -|-.+|
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG-a~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 94 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG-AEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYES 94 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC-CEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhHH
Confidence 578999999994 555566666565 67999999999888776654321100 0 000000 111111
Q ss_pred -HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 172 -LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 172 -l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
+.+.-..+|+||...--+. .....|.|++-.+. |+++-+++
T Consensus 95 ~f~~~i~~~d~vI~~~~~~~--~~~P~lvt~~~~~~-----m~~gsvIv 136 (168)
T PF01262_consen 95 NFAEFIAPADIVIGNGLYWG--KRAPRLVTEEMVKS-----MKPGSVIV 136 (168)
T ss_dssp HHHHHHHH-SEEEEHHHBTT--SS---SBEHHHHHT-----SSTTEEEE
T ss_pred HHHHHHhhCcEEeeecccCC--CCCCEEEEhHHhhc-----cCCCceEE
Confidence 2222256899998664332 22347889876554 55554443
No 315
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.54 E-value=1.1 Score=39.51 Aligned_cols=101 Identities=13% Similarity=0.228 Sum_probs=60.2
Q ss_pred eEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-c-----cccC-------CCCeEEEEccHHHHH
Q 019550 108 TVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-Q-----EAFC-------SKKLNLVVNDAKAEL 172 (339)
Q Consensus 108 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~-----~~~~-------~~rv~v~~~D~~~~l 172 (339)
+|.+||+|.=+ ++..++. . ..+|+.+|.|++.++.+++++... . ..+. -.+++ ...|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl---- 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-A-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDL---- 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH-T-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSG----
T ss_pred CEEEEcCCHHHHHHHHHHHh-C-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCH----
Confidence 58899998544 3344444 3 579999999999999988876531 0 0000 12344 22332
Q ss_pred HhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 173 EKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 173 ~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.... ..|+||=..+... . ..+++|+. +.+.+.|+-+|+.|+.+
T Consensus 74 ~~~~-~adlViEai~E~l---~----~K~~~~~~-l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDL---E----LKQELFAE-LDEICPPDTILASNTSS 116 (180)
T ss_dssp GGGC-TESEEEE-S-SSH---H----HHHHHHHH-HHCCS-TTSEEEE--SS
T ss_pred HHHh-hhheehhhccccH---H----HHHHHHHH-HHHHhCCCceEEecCCC
Confidence 2222 6899988876432 1 25689999 89999999999998643
No 316
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.48 E-value=5.2 Score=37.82 Aligned_cols=109 Identities=18% Similarity=0.221 Sum_probs=68.3
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.+|+++|+| +|.+++.+.+.-....|++.|.+..-.+.+.+. ... +.. ..+ .........|+||+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~-----d~~----~~~---~~~~~~~~aD~Viv 70 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVI-----DEL----TVA---GLAEAAAEADLVIV 70 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-Ccc-----ccc----ccc---hhhhhcccCCEEEE
Confidence 579999988 677777766644445678888888777766543 111 110 011 11122356899999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
..|-. .+.++.++ +...|++|-+++ -.+|. -..+.+.+++..+.
T Consensus 71 avPi~---------~~~~~l~~-l~~~l~~g~iv~-Dv~S~--------K~~v~~a~~~~~~~ 114 (279)
T COG0287 71 AVPIE---------ATEEVLKE-LAPHLKKGAIVT-DVGSV--------KSSVVEAMEKYLPG 114 (279)
T ss_pred eccHH---------HHHHHHHH-hcccCCCCCEEE-ecccc--------cHHHHHHHHHhccC
Confidence 98732 26688888 777899876664 44432 24567777777755
No 317
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.40 E-value=1.2 Score=40.21 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=55.6
Q ss_pred hcccCCCCCeEEEEecchhHHH--HHHHhcCCCCEEEEEEcC--HHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh
Q 019550 99 PLLCHQNPKTVFIMGGGEGSAA--REALKHKSLEKVVMCDID--QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK 174 (339)
Q Consensus 99 ~l~~~~~p~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid--~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~ 174 (339)
|++..-+.++||+||+|.=+.. +.+++ . .++|++|+.+ ++..++++ ..+++++.++....
T Consensus 2 P~~l~l~gk~vlVvGgG~va~rk~~~Ll~-~-ga~VtVvsp~~~~~l~~l~~-----------~~~i~~~~~~~~~~--- 65 (205)
T TIGR01470 2 PVFANLEGRAVLVVGGGDVALRKARLLLK-A-GAQLRVIAEELESELTLLAE-----------QGGITWLARCFDAD--- 65 (205)
T ss_pred CeEEEcCCCeEEEECcCHHHHHHHHHHHH-C-CCEEEEEcCCCCHHHHHHHH-----------cCCEEEEeCCCCHH---
Confidence 4444445789999999965443 44444 3 4689998654 34444332 24677777664321
Q ss_pred cCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 175 RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 175 ~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.-..+|+|+....++. . ....++. + +.-|+++-.+.
T Consensus 66 dl~~~~lVi~at~d~~---l-----n~~i~~~-a----~~~~ilvn~~d 101 (205)
T TIGR01470 66 ILEGAFLVIAATDDEE---L-----NRRVAHA-A----RARGVPVNVVD 101 (205)
T ss_pred HhCCcEEEEECCCCHH---H-----HHHHHHH-H----HHcCCEEEECC
Confidence 1256999998876542 1 2344444 3 34588874433
No 318
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.25 E-value=3.9 Score=41.61 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred eEEEEecchhHHHHHHH-hcCC-CCEEEEEEcCHHHHHHHHHhhh-hhcccc-------CCCCeEEEEccHHHHHHhcCC
Q 019550 108 TVFIMGGGEGSAAREAL-KHKS-LEKVVMCDIDQEVVDFCRRFLT-VNQEAF-------CSKKLNLVVNDAKAELEKRNE 177 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~-~~~~-~~~v~~VEid~~vi~~ar~~f~-~~~~~~-------~~~rv~v~~~D~~~~l~~~~~ 177 (339)
+|.+||+|-.++...++ ...+ ..+|++||+|++.++..++-.. .....+ ...++++ ..|..+.+ .
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i----~ 77 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHV----A 77 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHH----h
Confidence 68999999766655433 2222 3679999999999998765421 110000 0011222 12211112 3
Q ss_pred ceeEEEecCCCCCCC-C-----ccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEE
Q 019550 178 KFDVIFGDLADPVEG-G-----PCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAY 251 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~-~-----p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~ 251 (339)
.-|+|++-.+.|... + .+..-+-.+..+. +.+.|+++-++++.+..| .. ....+...+.+.-+....+
T Consensus 78 ~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~-i~~~l~~~~lVv~~STvp--~G---tt~~~~~~l~~~~~g~~f~ 151 (473)
T PLN02353 78 EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM-IADVSKSDKIVVEKSTVP--VK---TAEAIEKILTHNSKGINFQ 151 (473)
T ss_pred cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH-HHhhCCCCcEEEEeCCCC--CC---hHHHHHHHHHhhCCCCCeE
Confidence 468888876644321 1 1111123455566 577888877777766543 12 2234444444432223333
Q ss_pred EEeeccc
Q 019550 252 TAHVPSF 258 (339)
Q Consensus 252 ~~~iP~~ 258 (339)
.++-|.+
T Consensus 152 v~~~PEr 158 (473)
T PLN02353 152 ILSNPEF 158 (473)
T ss_pred EEECCCc
Confidence 4456665
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.15 E-value=1.2 Score=43.19 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvI 182 (339)
..++||++|+|. |.++.++++..+..+|++++.+++-.++++++ ... .-+.....|..+.+.. ..+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GAT------ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCc------eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 457899998753 44556677777766799999999999998775 211 0011111233333433 23468988
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+--...+ +.++. +-+.|+++|.++.-.
T Consensus 264 id~~G~~------------~~~~~-~~~~l~~~G~iv~~G 290 (371)
T cd08281 264 FEMAGSV------------PALET-AYEITRRGGTTVTAG 290 (371)
T ss_pred EECCCCh------------HHHHH-HHHHHhcCCEEEEEc
Confidence 7543211 33455 457899999988643
No 320
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.15 E-value=0.92 Score=44.09 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=24.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
..++||+||+|+ |+.....+...++.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 357899999984 33333333346888999999984
No 321
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.03 E-value=0.41 Score=42.49 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=34.0
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHH
Q 019550 103 HQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRR 147 (339)
Q Consensus 103 ~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~ 147 (339)
..+..-|||--+|+|+++.++.+. ..+-.++|++++..++|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 345678999999999999988873 4689999999999999975
No 322
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.99 E-value=0.31 Score=42.49 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=65.7
Q ss_pred EEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhh--hhhccccCCCCeEEEE-ccHHHHHH---hcCCceeEE
Q 019550 110 FIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFL--TVNQEAFCSKKLNLVV-NDAKAELE---KRNEKFDVI 182 (339)
Q Consensus 110 L~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f--~~~~~~~~~~rv~v~~-~D~~~~l~---~~~~~yDvI 182 (339)
|.+|=|+-+++..++++.+ ..+|++--.|.+ -++.++|- ..+-..++...++++. -|+.+.-. ....+||.|
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 6789999999999998766 667766555544 23333332 1111122345555443 34433211 124789999
Q ss_pred EecCCCCCCC---Cc----cccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEG---GP----CYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~---~p----~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|.+-|..... +. ..+-.-..||+. ++++|+++|.+.+.
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCCCCEEEEE
Confidence 9999854210 00 011233689999 89999999976654
No 323
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.98 E-value=1.2 Score=41.73 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=64.2
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-----cc-ccC-------CCCeEEEEccHHHH
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-----QE-AFC-------SKKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-----~~-~~~-------~~rv~v~~~D~~~~ 171 (339)
++|.+||+| ++.++..+++. + .+|+++|++++.++.+++.+... .. ... -.++++ ..|. +-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 79 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-G-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL-DD 79 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-C-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-HH
Confidence 479999999 66677766663 3 48999999999987665433211 00 000 013432 2342 21
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+ +..|+|+.-.+... ....++|+. +.+.++++.+++.++.+
T Consensus 80 ~----~~aDlVi~av~e~~-------~~k~~~~~~-l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 L----KDADLVIEAATENM-------DLKKKIFAQ-LDEIAKPEAILATNTSS 120 (282)
T ss_pred h----ccCCeeeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 2 45799999876322 124588898 78899999888776543
No 324
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.80 E-value=0.9 Score=42.77 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=62.6
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-cc-----ccC-------CCCeEEEEccHHHH
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QE-----AFC-------SKKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~-----~~~-------~~rv~v~~~D~~~~ 171 (339)
++|.+||+| ++.++..+++ . ..+|+++|.|++.++.++++.... .. ... ..+++. ..|..+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~-~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAV-S-GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA 78 (288)
T ss_pred cEEEEECccHHHHHHHHHHHh-C-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh
Confidence 579999998 4445555554 3 357999999999999887654211 00 000 012222 2332222
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
+ +..|+|+.-.++.. . ...++|+. +.+.++++.++++++.
T Consensus 79 ~----~~aD~Vi~avpe~~--~-----~k~~~~~~-l~~~~~~~~il~~~tS 118 (288)
T PRK09260 79 V----ADADLVIEAVPEKL--E-----LKKAVFET-ADAHAPAECYIATNTS 118 (288)
T ss_pred h----cCCCEEEEeccCCH--H-----HHHHHHHH-HHhhCCCCcEEEEcCC
Confidence 2 45799998887542 0 13467777 6788888888877764
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.72 E-value=1.6 Score=39.37 Aligned_cols=98 Identities=19% Similarity=0.298 Sum_probs=60.6
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH-HhcCCceeE
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL-EKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l-~~~~~~yDv 181 (339)
.+.++||+.|+|+ |..+..+++..+ .+|++++.+++-.+.+++.... .-+.....+...-+ ....+.+|+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCE
Confidence 4567899999986 666667777665 7899999998888877654211 00111111222212 122467999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+.....+ ...+. +.+.|+++|.++...
T Consensus 205 vi~~~~~~------------~~~~~-~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP------------ETLAQ-ALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH------------HHHHH-HHHhcccCCEEEEEc
Confidence 98654321 23455 567899999988654
No 326
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=90.37 E-value=0.55 Score=40.76 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCe-EEEEccHHHHHHhcCCceeEEEe
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKL-NLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv-~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
.++++++|..-=-+-..+++ .++++|..||-++--++ .++ ..|+ .+...|...-.+...++||++.+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~GA~~iltveyn~L~i~--~~~---------~dr~ssi~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HGAAKILTVEYNKLEIQ--EEF---------RDRLSSILPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cCCceEEEEeecccccC--ccc---------ccccccccHHHHHHHHHHhhccchhhhe
Confidence 57899999886666566666 47889999998762211 111 1233 23334444333445678998776
Q ss_pred cCC-CCCC----CCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 185 DLA-DPVE----GGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 185 D~~-d~~~----~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
-.. ++.. +.|....-...-+.. +++.||+||.|.+-.
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl~~m~~-i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDLRAMAK-IKCVLKPGGLLFLGV 111 (177)
T ss_pred echhccccccccCCCCCccccHHHHHH-HHHhhccCCeEEEEe
Confidence 443 1110 112222334566777 799999999887653
No 327
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.32 E-value=3.7 Score=40.98 Aligned_cols=105 Identities=19% Similarity=0.255 Sum_probs=57.0
Q ss_pred CeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhh-hhhccc--------cCCCCeEEEEccHHHHHHhc
Q 019550 107 KTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFL-TVNQEA--------FCSKKLNLVVNDAKAELEKR 175 (339)
Q Consensus 107 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f-~~~~~~--------~~~~rv~v~~~D~~~~l~~~ 175 (339)
++|.+||+|--+ ++..+++ .+ -+|+++|+|++.++..+.-. +..... ....++... .|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~-~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~-------- 72 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS-RQ-KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TT-------- 72 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cc--------
Confidence 579999999443 3443444 33 68999999999988643211 100000 001111111 11
Q ss_pred CCceeEEEecCCCCCCCCccccC-CcHHHHHHHHccccCCCcEEEEecC
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQL-YTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L-~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.+..|+|++..+.|........+ +-.+..+. +.+.|++|-+++..+.
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~-i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKS-IAPVLKKGDLVILEST 120 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHH-HHHhCCCCCEEEEeCC
Confidence 13579999988866321111111 22345566 5778888777776654
No 328
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.22 E-value=3.3 Score=39.39 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-c-CCceeE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-R-NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~-~~~yDv 181 (339)
...+||++|+|. |..+.++++..+..+|++++.+++-.+.++++ ... .-+.....+ .+.+.. . ...+|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL-GAD------FVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEEcCCcch-HHHHHHHhCCCCCCE
Confidence 467899998753 33445566777765599999999988888764 211 001111122 222322 2 246998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+--...+ ..+.. +.+.|+++|.+++-.
T Consensus 235 vid~~g~~------------~~~~~-~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIECSGNT------------AARRL-ALEAVRPWGRLVLVG 262 (339)
T ss_pred EEECCCCH------------HHHHH-HHHHhhcCCEEEEEc
Confidence 87543311 33444 456899999988643
No 329
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.19 E-value=7.8 Score=33.74 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++|.+||+|. |......++-++ .+|.+++..+......... .+ ...+..+.++ +.|+|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~~-----------~~--~~~~l~ell~----~aDiv~ 96 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADEF-----------GV--EYVSLDELLA----QADIVS 96 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHT-----------TE--EESSHHHHHH----H-SEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhcccc-----------cc--eeeehhhhcc----hhhhhh
Confidence 478999999973 333344444465 6999999998866522221 12 2234455554 379999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHh
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQ 243 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~ 243 (339)
+-.+... ...+++..++|+. |++|.+ ++|.+-.. .- .-..+++.|++
T Consensus 97 ~~~plt~---~T~~li~~~~l~~-----mk~ga~-lvN~aRG~-~v---de~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTP---ETRGLINAEFLAK-----MKPGAV-LVNVARGE-LV---DEDALLDALES 143 (178)
T ss_dssp E-SSSST---TTTTSBSHHHHHT-----STTTEE-EEESSSGG-GB----HHHHHHHHHT
T ss_pred hhhcccc---ccceeeeeeeeec-----cccceE-EEeccchh-hh---hhhHHHHHHhh
Confidence 9987421 1257888888775 565554 56864211 11 22456677774
No 330
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.18 E-value=1.5 Score=41.39 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=62.5
Q ss_pred CCeEEEEecchh--HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccCC-------CCeEEEEccHHH
Q 019550 106 PKTVFIMGGGEG--SAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFCS-------KKLNLVVNDAKA 170 (339)
Q Consensus 106 p~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~~-------~rv~v~~~D~~~ 170 (339)
-++|.+||+|.- .++..+++ . ..+|+++|.+++.++.+.+.+... ...+.. .++++. .|. +
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~-~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 79 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL-A-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-E 79 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-H
Confidence 367999999944 34454544 2 358999999999988765433211 010000 233332 332 2
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.+ +..|+||.-.++.. -..+.+|+. +...++++.+++.++.+
T Consensus 80 ~~----~~aD~Vieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~s~ts~ 121 (292)
T PRK07530 80 DL----ADCDLVIEAATEDE-------TVKRKIFAQ-LCPVLKPEAILATNTSS 121 (292)
T ss_pred Hh----cCCCEEEEcCcCCH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 22 45799999887532 013477788 78889998888766543
No 331
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.17 E-value=2.1 Score=40.95 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=60.5
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cCCcee
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RNEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~yD 180 (339)
...++||+.|+| .|..+.++++..+...+++++.+++-.++++++ +.. .-+.....+..+.+.. ..+.+|
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GAT------DIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------eEecCCCCCHHHHHHHHhCCCCCc
Confidence 456789999765 344556677777776799999999888888874 211 1111111233333322 235699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+-... + .+.+.. +.+.|+++|.++.-
T Consensus 238 ~vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 265 (351)
T cd08285 238 AVIIAGG-----G-------QDTFEQ-ALKVLKPGGTISNV 265 (351)
T ss_pred EEEECCC-----C-------HHHHHH-HHHHhhcCCEEEEe
Confidence 8875332 1 134566 57789999988753
No 332
>PLN02740 Alcohol dehydrogenase-like
Probab=90.16 E-value=3.1 Score=40.64 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=57.4
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE--ccHHHHHHh-cCCcee
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV--NDAKAELEK-RNEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~--~D~~~~l~~-~~~~yD 180 (339)
..++||++|+|. |..+.++++..+..+|++++.+++-.+.+++. +.. .-+.... .|..+.+.. ..+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GIT------DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CCc------EEEecccccchHHHHHHHHhCCCCC
Confidence 457899998763 34455667777766799999999999999774 211 1111111 123333333 223699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCC-cEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDN-GIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g-Gilv~~ 221 (339)
+|+--... + +.++. ..+.++++ |.+++-
T Consensus 271 vvid~~G~-----~-------~~~~~-a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 271 YSFECAGN-----V-------EVLRE-AFLSTHDGWGLTVLL 299 (381)
T ss_pred EEEECCCC-----h-------HHHHH-HHHhhhcCCCEEEEE
Confidence 88654331 1 33455 45678886 887654
No 333
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.07 E-value=2 Score=41.07 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvI 182 (339)
..++||++|+|+ |..+..+++..+...|.+++.+++-.+.++++ +.. ..+ .....+..+..+.. ...+|.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~-~~i-----~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM-QTF-----NSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc-eEe-----cCcccCHHHHHHHhcCCCCCeE
Confidence 467899998753 33445566767766688999999988888764 211 001 11111212222222 2468877
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++|.... ...+.. +-+.|+++|.+++-
T Consensus 233 v~d~~G~-----------~~~~~~-~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGV-----------PQTVEL-AIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCC-----------HHHHHH-HHHHhhcCCEEEEE
Confidence 7776521 134555 45789999998864
No 334
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.89 E-value=1.6 Score=39.43 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 138 (339)
...+|+++|+|+ |+.....+...+..+++.+|.|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 357899999984 4433344444688999999999
No 335
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=89.88 E-value=2.9 Score=38.89 Aligned_cols=124 Identities=10% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc---CCceeEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR---NEKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~---~~~yDvI 182 (339)
|..=|..=+|+=-+++.+++ +..++...|+-|.=..+.++.|.. +.++++..+||..-+... +++=-+|
T Consensus 89 ~~~~l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~------d~~vrv~~~DG~~~l~a~LPP~erRglV 160 (279)
T COG2961 89 PGGGLRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG------DRRVRVLRGDGFLALKAHLPPKERRGLV 160 (279)
T ss_pred CCCCcccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC------CcceEEEecCcHHHHhhhCCCCCcceEE
Confidence 33337777888899999887 457899999999999999998863 689999999999887653 4667899
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFK 246 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~ 246 (339)
++|++-..... .--..+-+++ ..++- ++|+++++.. ....+.++.+.+.|+..-.
T Consensus 161 LIDPPfE~~~e---Y~rvv~~l~~-~~kRf-~~g~yaiWYP----ik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 161 LIDPPFELKDE---YQRVVEALAE-AYKRF-ATGTYAIWYP----IKDRRQIRRFLRALEALGI 215 (279)
T ss_pred EeCCCcccccH---HHHHHHHHHH-HHHhh-cCceEEEEEe----ecchHHHHHHHHHHhhcCc
Confidence 99998432100 0001133333 22232 4899998752 3356677888888887643
No 336
>PRK11524 putative methyltransferase; Provisional
Probab=89.87 E-value=0.72 Score=43.54 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=39.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhh
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLT 150 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~ 150 (339)
.+..-|||--+|+|+++..+.+. ..+..++|+|++.+++|++.+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 45677999999999999987773 4789999999999999999875
No 337
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.79 E-value=1.8 Score=41.20 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.5
Q ss_pred CeEEEEec--chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEEE
Q 019550 107 KTVFIMGG--GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVIF 183 (339)
Q Consensus 107 ~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvIi 183 (339)
++||+.|+ |-|..+.+++++.+..+|+++.-+++-.+.+++.++.. .-+.....|..+.++. ..+.+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~------~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD------AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc------EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 68999985 56777788888877557999998888777777644321 1111111344444433 235699888
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|... +. . ++. +.+.|+++|.++.-
T Consensus 230 -d~~g----~~-------~-~~~-~~~~l~~~G~iv~~ 253 (345)
T cd08293 230 -DNVG----GE-------I-SDT-VISQMNENSHIILC 253 (345)
T ss_pred -ECCC----cH-------H-HHH-HHHHhccCCEEEEE
Confidence 4331 11 1 344 46789999998853
No 338
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.63 E-value=0.5 Score=46.41 Aligned_cols=103 Identities=19% Similarity=0.193 Sum_probs=69.2
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe-
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG- 184 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~- 184 (339)
..+++++|||-|...+++... ..+.+++++.++.-+..+......... +.+..+...|..+- ...+.+||.+-.
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l---~~k~~~~~~~~~~~-~fedn~fd~v~~l 185 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYL---DNKCNFVVADFGKM-PFEDNTFDGVRFL 185 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHh---hhhcceehhhhhcC-CCCccccCcEEEE
Confidence 457999999999999999885 467899999988877766665432211 33444466664321 112467887754
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|..-. .| .....|++ +.+.++|||++++.
T Consensus 186 d~~~~---~~----~~~~~y~E-i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCH---AP----DLEKVYAE-IYRVLKPGGLFIVK 214 (364)
T ss_pred eeccc---CC----cHHHHHHH-HhcccCCCceEEeH
Confidence 44322 12 23578899 79999999999864
No 339
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.53 E-value=0.64 Score=43.80 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=61.7
Q ss_pred CeEEEEecchh--HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccC--------CCCeEEEEccHHH
Q 019550 107 KTVFIMGGGEG--SAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFC--------SKKLNLVVNDAKA 170 (339)
Q Consensus 107 ~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~--------~~rv~v~~~D~~~ 170 (339)
++|.+||+|.- +++..+++ . ..+|+++|.+++.++.+++..... ...+. ..++++ ..|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-H-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHH
Confidence 57999999943 34444443 3 358999999999888877653211 00000 123432 344333
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
.+ +.-|+||...+... -...++|+. +...++++-+++.++.
T Consensus 81 a~----~~aDlVieavpe~~-------~~k~~~~~~-l~~~~~~~~ii~sntS 121 (287)
T PRK08293 81 AV----KDADLVIEAVPEDP-------EIKGDFYEE-LAKVAPEKTIFATNSS 121 (287)
T ss_pred Hh----cCCCEEEEeccCCH-------HHHHHHHHH-HHhhCCCCCEEEECcc
Confidence 22 45799999887432 024577888 6778888888776653
No 340
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.40 E-value=1.2 Score=43.45 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 357899999985 44444444457899999999885
No 341
>PRK08328 hypothetical protein; Provisional
Probab=89.25 E-value=1.7 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=25.6
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
...+||++|||+ |+.....+...+..+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 357899999984 55444445457899999998763
No 342
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.21 E-value=2.8 Score=39.75 Aligned_cols=102 Identities=17% Similarity=0.317 Sum_probs=58.8
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCC--------CCeEEEEccHHHHHHhc
Q 019550 106 PKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCS--------KKLNLVVNDAKAELEKR 175 (339)
Q Consensus 106 p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~--------~rv~v~~~D~~~~l~~~ 175 (339)
-++|.+||+| ++.++..+++ .+ .+|+++|.+++.++.+++........... .++++ ..|..+.+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~-~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~--- 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFAR-KG-LQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAAV--- 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHh-CC-CeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHHh---
Confidence 3679999999 4455555554 33 57999999999988877653211000000 12222 23332222
Q ss_pred CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+..|+||.-.++... ...++++. +...++++-+++.++
T Consensus 78 -~~aDlVi~av~~~~~-------~~~~v~~~-l~~~~~~~~ii~s~t 115 (311)
T PRK06130 78 -SGADLVIEAVPEKLE-------LKRDVFAR-LDGLCDPDTIFATNT 115 (311)
T ss_pred -ccCCEEEEeccCcHH-------HHHHHHHH-HHHhCCCCcEEEECC
Confidence 457999998764320 13466777 566666665665554
No 343
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.07 E-value=2.7 Score=40.59 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=65.1
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhc-----ccc----CCCCeEEEEccHHHHHHh
Q 019550 106 PKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ-----EAF----CSKKLNLVVNDAKAELEK 174 (339)
Q Consensus 106 p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~-----~~~----~~~rv~v~~~D~~~~l~~ 174 (339)
.++|-+||+| +.+++..++. . ..+|+++|.+++.++.+++.+.... ... ...++++. .|..+-+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~-a-G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av-- 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA-H-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV-- 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh--
Confidence 4789999999 4555555555 3 4789999999998887666543110 000 01234433 2322222
Q ss_pred cCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 175 RNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 175 ~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
..-|+|+-..++.. . ...+.|+. +.+.++|+-++..|+.
T Consensus 82 --~~aDlViEavpE~l--~-----vK~~lf~~-l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 82 --ADADFIQESAPERE--A-----LKLELHER-ISRAAKPDAIIASSTS 120 (321)
T ss_pred --cCCCEEEECCcCCH--H-----HHHHHHHH-HHHhCCCCeEEEECCC
Confidence 45799999887532 1 24578888 7888999888877754
No 344
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.90 E-value=1.3 Score=43.62 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=25.5
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 138 (339)
..++||++|+|+ |......+...++.+++.||-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999984 4444444445788999999998
No 345
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=88.89 E-value=0.41 Score=45.78 Aligned_cols=109 Identities=13% Similarity=0.222 Sum_probs=65.5
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhh----hh------------cc--cc-----------
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLT----VN------------QE--AF----------- 156 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~----~~------------~~--~~----------- 156 (339)
+-+||+=|||.|.++..++.... ++-+-|.+--|+= |..|.- .. .. ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli-~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLI-CSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHH-HHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 45799999999999999998543 3444477655542 222211 00 00 00
Q ss_pred --------CCCCeEEEEccHHHHHHhcC--CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 157 --------CSKKLNLVVNDAKAELEKRN--EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 157 --------~~~rv~v~~~D~~~~l~~~~--~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
....+++..||..+...... +.||+|+..-+=.. +... .|+++. +.+.|+|||+.+ |.|+-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT----a~Ni--leYi~t-I~~iLk~GGvWi-NlGPL 298 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT----AHNI--LEYIDT-IYKILKPGGVWI-NLGPL 298 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec----hHHH--HHHHHH-HHHhccCCcEEE-eccce
Confidence 01123445577666554432 47999998866211 1122 389998 799999999875 76653
No 346
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.81 E-value=3.7 Score=39.42 Aligned_cols=98 Identities=20% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE---ccHHHHHHhc--CCc
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV---NDAKAELEKR--NEK 178 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~---~D~~~~l~~~--~~~ 178 (339)
...+||++|+|. |..+.++++..+. +|++++.+++-.+.++++ +.. .-+.... .|..+.+... ...
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGF-GAD------LTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHh-CCc------eEecCccccHHHHHHHHHhhcccCC
Confidence 467899999865 5566777777765 799999999988888764 221 0011111 1333333322 134
Q ss_pred eeE---EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 179 FDV---IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 179 yDv---Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+|. +++|.... ....+. +-+.|+++|.+++-.
T Consensus 238 ~d~~~d~v~d~~g~-----------~~~~~~-~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 238 LRSTGWKIFECSGS-----------KPGQES-ALSLLSHGGTLVVVG 272 (349)
T ss_pred CCCCcCEEEECCCC-----------hHHHHH-HHHHHhcCCeEEEEC
Confidence 652 44455411 134454 456899999997653
No 347
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.74 E-value=3.3 Score=39.77 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCCeEEEEecchhH-HHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
...+||++|+|+=+ ++..+++. .+..+|++++.+++=++.+++ +.. .. ...+ +.. ...+|+|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~---------~~-~~~~----~~~-~~g~d~v 226 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE---------TY-LIDD----IPE-DLAVDHA 226 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc---------ee-ehhh----hhh-ccCCcEE
Confidence 45789999976444 34455654 456789999999988888775 211 00 1111 111 1248988
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+ |.... + .+...++. .-+.|+++|.+++-.
T Consensus 227 i-D~~G~----~----~~~~~~~~-~~~~l~~~G~iv~~G 256 (341)
T cd08237 227 F-ECVGG----R----GSQSAINQ-IIDYIRPQGTIGLMG 256 (341)
T ss_pred E-ECCCC----C----ccHHHHHH-HHHhCcCCcEEEEEe
Confidence 7 44311 1 02244555 567999999988643
No 348
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=88.65 E-value=4.2 Score=41.00 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=29.3
Q ss_pred eEEEEecchhHHHHHHHh----c---CCCCEEEEEEcCHHHHHH----HHHhhh
Q 019550 108 TVFIMGGGEGSAAREALK----H---KSLEKVVMCDIDQEVVDF----CRRFLT 150 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----ar~~f~ 150 (339)
+|.+||+|+. .+..+.+ . .+..+|+.+|||++-++. +++.+.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6899999996 5544433 2 356899999999976665 555444
No 349
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.56 E-value=3.4 Score=35.91 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=55.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
.+..+|+.||+=+-.....- ...+..++...|+|...-....+.|-... ++.| .+..+...++||+||
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~~~~F~fyD--~~~p---------~~~~~~l~~~~d~vv 91 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFGGDEFVFYD--YNEP---------EELPEELKGKFDVVV 91 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcCCcceEECC--CCCh---------hhhhhhcCCCceEEE
Confidence 34578999998766555432 13456789999999887664433111110 0011 111122257899999
Q ss_pred ecCCCCCCCCccccCCcHHHH----HHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFY----ERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~----~~~~~~~L~~gGilv~~ 221 (339)
+|||- .++|.+ +. ++..+++++.+++-
T Consensus 92 ~DPPF----------l~~ec~~k~a~t-i~~L~k~~~kii~~ 122 (162)
T PF10237_consen 92 IDPPF----------LSEECLTKTAET-IRLLLKPGGKIILC 122 (162)
T ss_pred ECCCC----------CCHHHHHHHHHH-HHHHhCccceEEEe
Confidence 99973 233444 43 45567777776654
No 350
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.51 E-value=2.8 Score=39.40 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=60.0
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeE
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDv 181 (339)
....+||+.|+| .|..+.++++..+ .+|++++.+++..+.++++ +.. .-+.....+..+.++. ..+.+|+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G-~~V~~~~~s~~~~~~~~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~D~ 235 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMG-AAVIAVDIKEEKLELAKEL-GAD------EVLNSLDDSPKDKKAAGLGGGFDV 235 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHh-CCC------EEEcCCCcCHHHHHHHhcCCCceE
Confidence 345689998765 3677777787665 5699999999988888764 221 0011111222232322 2457998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+..... .+.++. +.+.|+++|.++.-
T Consensus 236 vid~~g~------------~~~~~~-~~~~l~~~G~~v~~ 262 (338)
T cd08254 236 IFDFVGT------------QPTFED-AQKAVKPGGRIVVV 262 (338)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 7644321 144566 57899999998864
No 351
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.42 E-value=2.7 Score=33.44 Aligned_cols=91 Identities=26% Similarity=0.257 Sum_probs=56.0
Q ss_pred EEEEecchhHHHHHHHhc--CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcC-CceeEEE
Q 019550 109 VFIMGGGEGSAAREALKH--KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRN-EKFDVIF 183 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~--~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~-~~yDvIi 183 (339)
|+++|+|. +++.+++. ....+|++||.|++.++.+++. .+.++.+|+.+. |++.. ++.|.|+
T Consensus 1 vvI~G~g~--~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGR--IGREIAEQLKEGGIDVVVIDRDPERVEELREE-----------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCH--HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----------ccccccccchhhhHHhhcCccccCEEE
Confidence 57777764 44333331 1335899999999998887754 267888998754 44433 6799888
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+...+.. . +...-. ..+.+.|...+++..
T Consensus 68 ~~~~~d~-----~---n~~~~~--~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 68 ILTDDDE-----E---NLLIAL--LARELNPDIRIIARV 96 (116)
T ss_dssp EESSSHH-----H---HHHHHH--HHHHHTTTSEEEEEE
T ss_pred EccCCHH-----H---HHHHHH--HHHHHCCCCeEEEEE
Confidence 8876432 0 112222 235677888777764
No 352
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.24 E-value=0.76 Score=39.56 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=45.3
Q ss_pred HhhhhcccCCCCCeEEEEecchhHH--HHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH
Q 019550 95 LIHPPLLCHQNPKTVFIMGGGEGSA--AREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL 172 (339)
Q Consensus 95 l~~~~l~~~~~p~~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l 172 (339)
|.+.|++..-+.++||++|+|.=+. ++.+++ . ..+|++| +|+..+-.++. +.+++... .|-
T Consensus 2 ~~~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~-~-ga~V~VI--sp~~~~~l~~l----------~~i~~~~~---~~~ 64 (157)
T PRK06719 2 YNMYPLMFNLHNKVVVIIGGGKIAYRKASGLKD-T-GAFVTVV--SPEICKEMKEL----------PYITWKQK---TFS 64 (157)
T ss_pred CcccceEEEcCCCEEEEECCCHHHHHHHHHHHh-C-CCEEEEE--cCccCHHHHhc----------cCcEEEec---ccC
Confidence 4457887777889999999986554 344444 3 4689888 45543332221 23343322 222
Q ss_pred HhcCCceeEEEecCCCC
Q 019550 173 EKRNEKFDVIFGDLADP 189 (339)
Q Consensus 173 ~~~~~~yDvIi~D~~d~ 189 (339)
...-..+|+|+.-..++
T Consensus 65 ~~dl~~a~lViaaT~d~ 81 (157)
T PRK06719 65 NDDIKDAHLIYAATNQH 81 (157)
T ss_pred hhcCCCceEEEECCCCH
Confidence 22235689998865543
No 353
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.23 E-value=2.2 Score=37.28 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=23.0
Q ss_pred eEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 108 TVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 108 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
+|++||+|+ |+.....+...+..+++.+|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999984 44333333346888999999986
No 354
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.12 E-value=1.8 Score=41.84 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=82.5
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcC-C-ceeEEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRN-E-KFDVIF 183 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~-~-~yDvIi 183 (339)
.-+++++-+|.|++-.-+.. .+..-+.++||||..++.-+.+++. -.++..|..++....- . .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~-agf~~~~a~Eid~~a~~ty~~n~~~---------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEE-AGFEIVFANEIDPPAVATYKANFPH---------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHh-cCCeEEEEEecCHHHHHHHHHhCCC---------CceeechHhhcChhhccccCCCEEE
Confidence 34799999999998876665 4566788999999999999988753 3456677666544332 2 789999
Q ss_pred ecCCCC-CC--------CCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCc-hhhHHHHHHHHHhHCCce
Q 019550 184 GDLADP-VE--------GGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTH-KEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 184 ~D~~d~-~~--------~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~-~~~~~~i~~~l~~~F~~v 248 (339)
.-++-. .. ..+-..| ..+|.+. + ..++|. .+++. ..+++... ...+..+.+.|.+..-.+
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L-~~~~~r~-I-~~~~P~-~fv~E-NV~gl~~~~~~~~~~i~~~L~~~GY~~ 142 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSL-FLEFIRL-I-EQLRPK-FFVLE-NVKGLLSSKGQTFDEIKKELEELGYGV 142 (328)
T ss_pred eCCCCcchhhcCcccCCcCcccee-eHHHHHH-H-HhhCCC-EEEEe-cCchHHhcCchHHHHHHHHHHHcCCcc
Confidence 988721 10 1111223 4578875 4 578883 44432 22332222 346778888888875543
No 355
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.10 E-value=5.1 Score=39.60 Aligned_cols=103 Identities=22% Similarity=0.249 Sum_probs=60.8
Q ss_pred CCeEEEEe--cchhHHHHHHHhcCC--CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE----ccHHHHHHhc--
Q 019550 106 PKTVFIMG--GGEGSAAREALKHKS--LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV----NDAKAELEKR-- 175 (339)
Q Consensus 106 p~~VL~IG--~G~G~~~~~l~~~~~--~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~----~D~~~~l~~~-- 175 (339)
..+||++| ++-|..+.++++..+ ..+|++++.+++-++.+++.++.... .......++. .|..+.+...
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-SRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-ccCceEEEECCCccccHHHHHHHHhC
Confidence 46899998 446667777777653 35899999999999999986432100 0000111121 2344444332
Q ss_pred CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 176 NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 176 ~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
...+|+|+.....+ ..++. +.+.|+++|.+++..
T Consensus 255 g~g~D~vid~~g~~------------~~~~~-a~~~l~~~G~~v~~~ 288 (410)
T cd08238 255 GQGFDDVFVFVPVP------------ELVEE-ADTLLAPDGCLNFFA 288 (410)
T ss_pred CCCCCEEEEcCCCH------------HHHHH-HHHHhccCCeEEEEE
Confidence 24699888754311 33455 457899888665543
No 356
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.99 E-value=1.8 Score=39.91 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=25.9
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHH
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQE 140 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~ 140 (339)
..+||++|+|+ |+.....+...+..+++.||-|.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 56899999873 555555555578999999988743
No 357
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.83 E-value=3 Score=37.20 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
..+||++|+|+ |+-....+...+..+++.+|-|.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 56899999885 33223333347889999999884
No 358
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=87.83 E-value=7.5 Score=36.87 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHH-HhcCCCCEEEEEEcCHH
Q 019550 78 DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREA-LKHKSLEKVVMCDIDQE 140 (339)
Q Consensus 78 dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~~ 140 (339)
||.+....-|..-+.+.+.... ...+.++||+||+|+-+-+... +...+..+|+++..+++
T Consensus 98 ~g~l~G~NTD~~Gf~~~l~~~~--~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 98 DGYLRGYNTDGTGHIRAIKESG--FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCEEEEEecCHHHHHHHHHhcC--CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 5666665666544445554221 1234679999999866544322 22357789999999854
No 359
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=87.79 E-value=2.8 Score=40.70 Aligned_cols=34 Identities=38% Similarity=0.597 Sum_probs=24.2
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 138 (339)
...+||++|+|+ |+.....+...+..+++.||-|
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 357899999984 3333333334688899999998
No 360
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.78 E-value=3.7 Score=38.90 Aligned_cols=96 Identities=19% Similarity=0.264 Sum_probs=58.3
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+..+||+.|+|+ |..+..+++..+..++++++.+++..++++++- .. ..++ ....+..+.. .....+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g-~~-~vi~-----~~~~~~~~~~-~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG-AD-ETVN-----LARDPLAAYA-ADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC-CC-EEEc-----CCchhhhhhh-ccCCCccEEE
Confidence 467899988775 666677777776557999999988888877642 11 0000 0001111221 1234599987
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
--... ...++. +.+.|+++|.++.-
T Consensus 237 d~~g~------------~~~~~~-~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASGA------------PAALAS-ALRVVRPGGTVVQV 261 (339)
T ss_pred ECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence 64321 133555 56789999998753
No 361
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=87.73 E-value=8.7 Score=38.59 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=29.8
Q ss_pred eEEEEecchhHHHHHHHh----c---CCCCEEEEEEcCHHHHHH----HHHhhhh
Q 019550 108 TVFIMGGGEGSAAREALK----H---KSLEKVVMCDIDQEVVDF----CRRFLTV 151 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~----~---~~~~~v~~VEid~~vi~~----ar~~f~~ 151 (339)
+|.+||+|+. ....+.+ . .+..+|..+|||++-++. |++.+..
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~ 55 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEE 55 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 6889999996 5544443 1 356899999999976654 5555443
No 362
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.66 E-value=7.3 Score=41.06 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=59.7
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcC-CceeE
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRN-EKFDV 181 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~-~~yDv 181 (339)
..+|+++|+|. |......++.. ..+++++|.|++.++.++++ ..+++.+|+.+- |+... ++.|+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-----------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-----------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 36799999984 33333333323 35799999999999988763 256889998653 44432 67898
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+++-..|+.. +...-.. .+.+.|+-.+++..
T Consensus 468 vvv~~~d~~~--------n~~i~~~--ar~~~p~~~iiaRa 498 (621)
T PRK03562 468 LINAIDDPQT--------SLQLVEL--VKEHFPHLQIIARA 498 (621)
T ss_pred EEEEeCCHHH--------HHHHHHH--HHHhCCCCeEEEEE
Confidence 8888765431 1122222 34567776555543
No 363
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.63 E-value=4.6 Score=38.57 Aligned_cols=87 Identities=9% Similarity=0.019 Sum_probs=54.0
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDvI 182 (339)
...+||+.|+| .|..+.++++..+ .+|++++.+++-.+.+++.-.. .++. .+ ...+.+|++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~Ga~----------~vi~~~~------~~~~~~d~~ 227 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALALGAA----------SAGGAYD------TPPEPLDAA 227 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHhCCc----------eeccccc------cCcccceEE
Confidence 45789999965 4445566777666 4699999999888888875211 0110 01 112357876
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+..... + +.++. .-+.|+++|.+++-
T Consensus 228 i~~~~~-----~-------~~~~~-~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPA-----G-------GLVPP-ALEALDRGGVLAVA 253 (329)
T ss_pred EECCCc-----H-------HHHHH-HHHhhCCCcEEEEE
Confidence 543221 1 23555 56789999998764
No 364
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.60 E-value=1.7 Score=43.55 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=44.3
Q ss_pred eEEEEecchhHHH-HH---HHh--cCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEE-EccHHHHHHhcCCcee
Q 019550 108 TVFIMGGGEGSAA-RE---ALK--HKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLV-VNDAKAELEKRNEKFD 180 (339)
Q Consensus 108 ~VL~IG~G~G~~~-~~---l~~--~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~-~~D~~~~l~~~~~~yD 180 (339)
+|.+||+|+-+.+ .. ++. .....+|..+|+|++.++...+......... ....++. ..|..+-+ +..|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~-~~~~~I~~ttD~~eal----~~AD 76 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEEL-GAPLKIEATTDRREAL----DGAD 76 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEeCCHHHHh----cCCC
Confidence 6899999994443 22 321 1234589999999998877665543211111 1224443 56654444 3469
Q ss_pred EEEecCC
Q 019550 181 VIFGDLA 187 (339)
Q Consensus 181 vIi~D~~ 187 (339)
+|+.-..
T Consensus 77 ~Vi~ai~ 83 (423)
T cd05297 77 FVINTIQ 83 (423)
T ss_pred EEEEeeE
Confidence 8888776
No 365
>PRK07340 ornithine cyclodeaminase; Validated
Probab=87.56 E-value=18 Score=34.46 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=64.9
Q ss_pred eEEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHH--HHHHhcCCCCEEEEEEcC
Q 019550 62 DIALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAA--REALKHKSLEKVVMCDID 138 (339)
Q Consensus 62 ~I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid 138 (339)
.+.+++... |+.+ ++||...+..+.... -.++ .-.+..++.+++++||+|.=+-. ..++...+..+|.+.+.+
T Consensus 84 ~i~l~d~~t-G~p~a~~d~~~lT~~RTaA~--sala-~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~ 159 (304)
T PRK07340 84 EVVVADAAT-GERLFLLDGPTVTGRRTAAV--SLLA-ARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT 159 (304)
T ss_pred EEEEEECCC-CcEEEEEcChhHHHHHHHHH--HHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 455666554 5544 678877766654211 1111 11233357889999999854332 333333567899999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCC
Q 019550 139 QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADP 189 (339)
Q Consensus 139 ~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~ 189 (339)
++-.+...+.+... .+.+...|..+.+ ...|+|+.-.+.+
T Consensus 160 ~~~a~~~a~~~~~~-------~~~~~~~~~~~av----~~aDiVitaT~s~ 199 (304)
T PRK07340 160 AASAAAFCAHARAL-------GPTAEPLDGEAIP----EAVDLVVTATTSR 199 (304)
T ss_pred HHHHHHHHHHHHhc-------CCeeEECCHHHHh----hcCCEEEEccCCC
Confidence 87655444443311 1233345655444 3689999877644
No 366
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.51 E-value=4.3 Score=38.08 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=59.5
Q ss_pred CCCeEEEEe--cchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeE
Q 019550 105 NPKTVFIMG--GGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDv 181 (339)
+..+||+.| +|-|..+.++++..+ .+|+++..+++-.+.++++ +.. .-+.....|..+.+.. ..+.+|+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G-~~vi~~~~s~~~~~~l~~~-Ga~------~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKG-CKVIGCAGSDDKVAWLKEL-GFD------AVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC------EEEeCCCccHHHHHHHHCCCCcEE
Confidence 457899998 456777788888776 4799999888888888873 321 0011111233333432 2356998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+ |.. +. +.++. +.+.|+++|.++.-
T Consensus 215 vl-d~~-----g~-------~~~~~-~~~~l~~~G~iv~~ 240 (329)
T cd08294 215 YF-DNV-----GG-------EFSST-VLSHMNDFGRVAVC 240 (329)
T ss_pred EE-ECC-----CH-------HHHHH-HHHhhccCCEEEEE
Confidence 87 433 11 23455 56789999998754
No 367
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=87.50 E-value=3.4 Score=36.90 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=24.0
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
..+||++|+|+ |+-....+...++.+++.+|-|.
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 46899999984 33333333347889999999873
No 368
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.31 E-value=5.3 Score=37.84 Aligned_cols=97 Identities=14% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-c-CCceeE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-R-NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~-~~~yDv 181 (339)
+..+||+.|+| .|..+.++++..+...+.+++.+++-.+.++++- . +.-+.....+..+.+.. . .+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 45788886654 3556666777766557888888888888777642 1 11111122233343433 2 256998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+-... + .+.++. +.+.|+++|.++.-
T Consensus 240 vld~~g-----~-------~~~~~~-~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVG-----F-------EETFEQ-AVKVVRPGGTIANV 266 (347)
T ss_pred EEEccC-----C-------HHHHHH-HHHHhhcCCEEEEE
Confidence 874321 1 134566 56789999998753
No 369
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.93 E-value=3.6 Score=42.25 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=65.0
Q ss_pred CCCeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccC-------CCCeEEEEccHH
Q 019550 105 NPKTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFC-------SKKLNLVVNDAK 169 (339)
Q Consensus 105 ~p~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~-------~~rv~v~~~D~~ 169 (339)
+.++|-+||+|. .+++..+++ . .-+|+++|.+++.++.+++..... .+.+. -.|++.. .|.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~-a-G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~- 79 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS-A-GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL- 79 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH-
Confidence 456899999994 344554554 2 468999999999998776554311 00000 0233332 332
Q ss_pred HHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 170 AELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 170 ~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+-+ ...|+||.-.++... ..+++|+. +.+.++++-+++.|+.+
T Consensus 80 ~~l----~~aDlVIEav~E~~~-------vK~~vf~~-l~~~~~~~~IlasnTSt 122 (503)
T TIGR02279 80 HAL----ADAGLVIEAIVENLE-------VKKALFAQ-LEELCPADTIIASNTSS 122 (503)
T ss_pred HHh----CCCCEEEEcCcCcHH-------HHHHHHHH-HHhhCCCCeEEEECCCC
Confidence 222 357999999886431 24577887 67888888888877654
No 370
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=86.84 E-value=4.6 Score=38.00 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.3
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCH
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
...+|+++|+| -|+...+.+...++.+++.||.|.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 45789999998 466666666557889999999884
No 371
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.76 E-value=9 Score=36.12 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=58.7
Q ss_pred CCCCeEEEEe--cchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhc-CCce
Q 019550 104 QNPKTVFIMG--GGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKR-NEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG--~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~-~~~y 179 (339)
.+..+||+.| +|-|..+..+++..+ .+|+++..+++-.+.++++ +.. .. +.... .+..+.++.. .+.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G-~~Vi~~~~s~~~~~~~~~l-Ga~-~v-----i~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKG-CKVVGAAGSDEKVAYLKKL-GFD-VA-----FNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHc-CCC-EE-----EeccccccHHHHHHHhCCCCe
Confidence 3457899998 457777788888776 4788888888888888763 221 00 11111 1223333332 3469
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+|+ |.. +. +.++. +.+.|+++|.++.-
T Consensus 209 dvv~-d~~-----G~-------~~~~~-~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYF-DNV-----GG-------EFSNT-VIGQMKKFGRIAIC 236 (325)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhCcCcEEEEe
Confidence 9887 433 11 22345 56789999999864
No 372
>PLN02827 Alcohol dehydrogenase-like
Probab=86.74 E-value=6.8 Score=38.27 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE--ccHHHHHHh-cCCce
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV--NDAKAELEK-RNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~--~D~~~~l~~-~~~~y 179 (339)
...++||+.|+|+ |.++.++++..+...|++++.+++-.+.++++ +.. .-+.... .+..+.+.. ..+.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 264 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVT------DFINPNDLSEPIQQVIKRMTGGGA 264 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc------EEEcccccchHHHHHHHHHhCCCC
Confidence 3467899998653 33445667777766799999999888888764 211 0011111 133333433 23368
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCC-cEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDN-GIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g-Gilv~~ 221 (339)
|+|+--... + ..+.. +-+.|+++ |.+++-
T Consensus 265 d~vid~~G~-----~-------~~~~~-~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 265 DYSFECVGD-----T-------GIATT-ALQSCSDGWGLTVTL 294 (378)
T ss_pred CEEEECCCC-----h-------HHHHH-HHHhhccCCCEEEEE
Confidence 988743321 1 23444 45678898 998764
No 373
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=86.69 E-value=9.8 Score=35.96 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=54.1
Q ss_pred cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHH-HHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhcccc
Q 019550 78 DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSA-AREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAF 156 (339)
Q Consensus 78 dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~-~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~ 156 (339)
||.+....-|..-+.+.+.. .....+.++||+||+|+-+- ..+.+...+..+|+.++.+++-.+...+.+...
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~--~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~---- 174 (284)
T PRK12549 101 DGRRIGHNTDWSGFAESFRR--GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR---- 174 (284)
T ss_pred CCEEEEEcCCHHHHHHHHHh--hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh----
Confidence 56666666664444444432 11123468999999985443 333334467779999999976555443333211
Q ss_pred CCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 157 CSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 157 ~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
.+.+++..-+- +...-..+|+||.-.+
T Consensus 175 -~~~~~~~~~~~---~~~~~~~aDiVInaTp 201 (284)
T PRK12549 175 -FPAARATAGSD---LAAALAAADGLVHATP 201 (284)
T ss_pred -CCCeEEEeccc---hHhhhCCCCEEEECCc
Confidence 12233332221 1111245898887765
No 374
>PLN02494 adenosylhomocysteinase
Probab=86.53 E-value=14 Score=37.68 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=61.0
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++|+++|+|.=+ .....++..+ .+|+++|+|+.-...+... . +.+. +..+.+ +..|+|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~G-a~VIV~e~dp~r~~eA~~~-G----------~~vv--~leEal----~~ADVVI 314 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAG-ARVIVTEIDPICALQALME-G----------YQVL--TLEDVV----SEADIFV 314 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhhHHHHhc-C----------Ceec--cHHHHH----hhCCEEE
Confidence 46899999998543 2233344455 5899999998654333322 0 1111 222333 3479998
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHH-HHHHhHCCceEEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIY-NTIKQVFKHVVAYT 252 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~-~~l~~~F~~v~~~~ 252 (339)
..... ..+...+. .+.|++||+++ |.+.+........+.+.. -.-+.+.+++..|.
T Consensus 315 ~tTGt-------~~vI~~e~-----L~~MK~GAiLi-NvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~ 371 (477)
T PLN02494 315 TTTGN-------KDIIMVDH-----MRKMKNNAIVC-NIGHFDNEIDMLGLETYPGVKRITIKPQTDRWV 371 (477)
T ss_pred ECCCC-------ccchHHHH-----HhcCCCCCEEE-EcCCCCCccCHHHHhhccccceeccCCCceEEE
Confidence 73221 12222332 35689988886 665432112222222220 11134568888775
No 375
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.34 E-value=3.7 Score=37.70 Aligned_cols=34 Identities=35% Similarity=0.446 Sum_probs=26.2
Q ss_pred CCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCH
Q 019550 106 PKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 106 p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
..+||++|+| -|+...+.+...++.+++.||-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999997 455555555557899999999874
No 376
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=86.20 E-value=12 Score=36.43 Aligned_cols=146 Identities=13% Similarity=0.125 Sum_probs=77.2
Q ss_pred eEEEEecchhHHHHHHHhcCCC--------CEEEEEEc-----CHHHHHHHHHhhhhhcc--ccC-CCCeEEEEccHHHH
Q 019550 108 TVFIMGGGEGSAAREALKHKSL--------EKVVMCDI-----DQEVVDFCRRFLTVNQE--AFC-SKKLNLVVNDAKAE 171 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~~~~~--------~~v~~VEi-----d~~vi~~ar~~f~~~~~--~~~-~~rv~v~~~D~~~~ 171 (339)
+|.+||+|..+++....-.... .+|+.... ++++.+...+....... .+. .++++. ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 4789999988877655321222 57888877 67777776553221100 000 234544 4565554
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEE
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAY 251 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~ 251 (339)
++ .-|+|++-.++. +-+++.+. ++..|+++-. +++.. .++.........+.+.+++.+.. ...
T Consensus 80 l~----~ADiIIlAVPs~---------~i~~vl~~-l~~~l~~~~~-iVs~t-KGie~~~~~~~~~se~i~e~l~~-~~~ 142 (342)
T TIGR03376 80 AK----GADILVFVIPHQ---------FLEGICKQ-LKGHVKPNAR-AISCI-KGLEVSKDGVKLLSDIIEEELGI-PCG 142 (342)
T ss_pred Hh----cCCEEEEECChH---------HHHHHHHH-HHhhcCCCCE-EEEEe-CCcccCCCcCccHHHHHHHHhCC-CeE
Confidence 43 458999887643 23477777 6878876543 33431 11111111333344555555532 222
Q ss_pred EEeecccC-----Cc-eeEEEEecCC
Q 019550 252 TAHVPSFA-----DT-WGWVMASDQP 271 (339)
Q Consensus 252 ~~~iP~~~-----~~-~~~~~as~~p 271 (339)
...-|++. +. -..++||+.|
T Consensus 143 ~lsGP~~A~Eva~~~pt~~~ia~~~~ 168 (342)
T TIGR03376 143 VLSGANLANEVAKEKFSETTVGYRDP 168 (342)
T ss_pred EeeCcchHHHHHcCCCceEEEEeCCC
Confidence 33457762 21 2467788764
No 377
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.12 E-value=3.1 Score=37.84 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
.++|+++|||+ |+.....+...+..+++.||-|.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 56899999984 44333344447889999997664
No 378
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.09 E-value=1.2 Score=39.81 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=54.6
Q ss_pred CCCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 103 HQNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 103 ~~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.+.+++||++|.- +|....+++.. ..+|+++||.|.+- .+++ +++++ ++-+.-..+.||+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r----~~lp--------~~v~F-----r~~~~~~~G~~Dl 102 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMR----GFLP--------NNVKF-----RNLLKFIRGEVDL 102 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHH----hcCC--------CCccH-----hhhcCCCCCceeE
Confidence 4678999999985 77777777763 67999999999873 3332 33433 2334444678998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+ |.+.-. | .+++|++. ++|+ ++++.
T Consensus 103 iv-DlTGlG--G-----~~Pe~L~~-----fnp~-vfiVE 128 (254)
T COG4017 103 IV-DLTGLG--G-----IEPEFLAK-----FNPK-VFIVE 128 (254)
T ss_pred EE-eccccC--C-----CCHHHHhc-----cCCc-eEEEE
Confidence 75 665321 1 24566554 6774 55554
No 379
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=85.97 E-value=2.6 Score=40.11 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=44.0
Q ss_pred EEEEecchhHHHHHHHhc---CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEE----EEccHHHHH--Hhc--CC
Q 019550 109 VFIMGGGEGSAAREALKH---KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNL----VVNDAKAEL--EKR--NE 177 (339)
Q Consensus 109 VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v----~~~D~~~~l--~~~--~~ 177 (339)
||+-| |+|+++.++.++ ....++.++|.|+.-+-..++-+.... .++++++ +.+|.++.- ... ..
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~---~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF---PDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC-----TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc---cccCcccccCceeecccCHHHHHHHHhhc
Confidence 56666 568877776653 334789999999988877777664211 1455654 588987753 222 24
Q ss_pred ceeEEEecCC
Q 019550 178 KFDVIFGDLA 187 (339)
Q Consensus 178 ~yDvIi~D~~ 187 (339)
+.|+|+.-+.
T Consensus 77 ~pdiVfHaAA 86 (293)
T PF02719_consen 77 KPDIVFHAAA 86 (293)
T ss_dssp T-SEEEE---
T ss_pred CCCEEEEChh
Confidence 8999999886
No 380
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.93 E-value=9.8 Score=36.35 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=54.3
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHH-HHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQE-VVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~-vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDv 181 (339)
..++|++||+|.=+ .....++..+..+|++++.+++ ..++++++ + . .++. .|..+.+ ..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g--------~--~~~~~~~~~~~l----~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G--------G--NAVPLDELLELL----NEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C--------C--eEEeHHHHHHHH----hcCCE
Confidence 46889999986433 2222333345678999999976 44666664 1 1 1221 2322222 45899
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
||.-.+.+. + .+.++. +.+....+|.+++....|
T Consensus 242 Vi~at~~~~---~------~~~~~~-~~~~~~~~~~~viDlavP 275 (311)
T cd05213 242 VISATGAPH---Y------AKIVER-AMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred EEECCCCCc---h------HHHHHH-HHhhCCCCCeEEEEeCCC
Confidence 999877542 1 233443 222233367888876544
No 381
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=85.93 E-value=9.4 Score=36.90 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE--ccHHHHHHh-cCCce
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV--NDAKAELEK-RNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~--~D~~~~l~~-~~~~y 179 (339)
....+||++|+|. |..+..+++..+..+|++++.+++-.+.++++ ... .-+.... .+..+.+.. ..+.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT------DFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------cEeccccccchHHHHHHHHhCCCC
Confidence 3467899998652 33445667777766899999999988888764 211 0011111 112222322 23568
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCC-cEEEEec
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDN-GIFVTQA 222 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g-Gilv~~~ 222 (339)
|+|+--... + ..++. +-+.|+++ |.++.-.
T Consensus 256 d~vid~~g~-----~-------~~~~~-~~~~l~~~~G~~v~~g 286 (365)
T cd08277 256 DYSFECTGN-----A-------DLMNE-ALESTKLGWGVSVVVG 286 (365)
T ss_pred CEEEECCCC-----h-------HHHHH-HHHhcccCCCEEEEEc
Confidence 988743221 1 33455 45678875 9887643
No 382
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.64 E-value=4.8 Score=38.04 Aligned_cols=101 Identities=10% Similarity=0.252 Sum_probs=64.8
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccCC-------CCeEEEEccHHHH
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFCS-------KKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~~-------~rv~v~~~D~~~~ 171 (339)
++|-+||+| +++++..+++ . ..+|+.+|.+++.++.+++.+... ...... .|+++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-A-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999999 5566666665 3 468999999999998877664311 000000 12322 2332 22
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHcccc-CCCcEEEEecC
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKL-NDNGIFVTQAG 223 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L-~~gGilv~~~~ 223 (339)
+ ...|+||-..++... ..++.|.. +.+.+ +|+.+++.|+.
T Consensus 82 ~----~~~d~ViEav~E~~~-------~K~~l~~~-l~~~~~~~~~il~snTS 122 (286)
T PRK07819 82 F----ADRQLVIEAVVEDEA-------VKTEIFAE-LDKVVTDPDAVLASNTS 122 (286)
T ss_pred h----CCCCEEEEecccCHH-------HHHHHHHH-HHHhhCCCCcEEEECCC
Confidence 2 457999988875421 24578887 77777 78888888764
No 383
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.59 E-value=4 Score=37.63 Aligned_cols=138 Identities=24% Similarity=0.291 Sum_probs=84.2
Q ss_pred CCCeEEEEecchhHHHHHHHhc--C----CCC---EEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH-----
Q 019550 105 NPKTVFIMGGGEGSAAREALKH--K----SLE---KVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA----- 170 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~--~----~~~---~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~----- 170 (339)
.-++|++|+..-|+....+.+. . ..+ .|++||+.|-+ + -+.|.-+.+|.-.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P-------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P-------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c-------cCceEEeecccCCHhHHH
Confidence 4678999999999887766652 1 112 39999996643 1 2456666666432
Q ss_pred -HHHhc-CCceeEEEecCCCCCCCCccccCCcHHHHHH--------HHccccCCCcEEEEecCCCCccCchhhHHHHHHH
Q 019550 171 -ELEKR-NEKFDVIFGDLADPVEGGPCYQLYTKSFYER--------ILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNT 240 (339)
Q Consensus 171 -~l~~~-~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~--------~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~ 240 (339)
.++.. .++-|+|++|...... |.. .+ .||+|. +....|+|||.++... + ..+...-++..
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvT-GlH-d~--DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi-----f-Rg~~tslLysq 175 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVT-GLH-DL--DEYVQAQLLLAALNIATCVLKPGGSFVAKI-----F-RGRDTSLLYSQ 175 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCcc-ccc-cH--HHHHHHHHHHHHHHHHhheecCCCeeehhh-----h-ccCchHHHHHH
Confidence 23322 3689999999863321 221 11 233321 1346899999999753 2 23345567888
Q ss_pred HHhHCCceEEEEEeeccc--C-CceeEEEEecC
Q 019550 241 IKQVFKHVVAYTAHVPSF--A-DTWGWVMASDQ 270 (339)
Q Consensus 241 l~~~F~~v~~~~~~iP~~--~-~~~~~~~as~~ 270 (339)
|+..|..|..+. |.- . ..-.|++|..-
T Consensus 176 l~~ff~kv~~~K---PrsSR~sSiEaFvvC~~~ 205 (294)
T KOG1099|consen 176 LRKFFKKVTCAK---PRSSRNSSIEAFVVCLGY 205 (294)
T ss_pred HHHHhhceeeec---CCccccccceeeeeeccc
Confidence 999999987653 321 1 22348888753
No 384
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.39 E-value=6.2 Score=38.04 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=58.9
Q ss_pred CCCeEEEEec--chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHh-cCCcee
Q 019550 105 NPKTVFIMGG--GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEK-RNEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~-~~~~yD 180 (339)
...+||+.|+ |-|..+.++++..+ .+|++++.+++-.+.+++-++.. .-+.... .|..+.++. ..+.+|
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G-~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHG-CYVVGSAGSSQKVDLLKNKLGFD------EAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHhcCCC------EEEECCCcccHHHHHHHHCCCCcE
Confidence 4578999996 46777788888776 57889998888878776433321 0011111 133333433 234699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+ |.. +. ..+.. +.+.|+++|.+++-
T Consensus 231 ~v~-d~v-----G~-------~~~~~-~~~~l~~~G~iv~~ 257 (348)
T PLN03154 231 IYF-DNV-----GG-------DMLDA-ALLNMKIHGRIAVC 257 (348)
T ss_pred EEE-ECC-----CH-------HHHHH-HHHHhccCCEEEEE
Confidence 887 433 11 23445 46789999998864
No 385
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.27 E-value=11 Score=33.86 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=42.1
Q ss_pred hhcccCCCCCeEEEEecchhHHH--HHHHhcCCCCEEEEEEcC--HHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH
Q 019550 98 PPLLCHQNPKTVFIMGGGEGSAA--REALKHKSLEKVVMCDID--QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE 173 (339)
Q Consensus 98 ~~l~~~~~p~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid--~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~ 173 (339)
.|++..-..++||+||+|.=+.. +.+++ .+ .+|++|+.+ +++.+++.+ .++.+...+ |..
T Consensus 2 ~Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~-~g-a~V~VIs~~~~~~l~~l~~~-----------~~i~~~~~~---~~~ 65 (202)
T PRK06718 2 MPLMIDLSNKRVVIVGGGKVAGRRAITLLK-YG-AHIVVISPELTENLVKLVEE-----------GKIRWKQKE---FEP 65 (202)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHH-CC-CeEEEEcCCCCHHHHHHHhC-----------CCEEEEecC---CCh
Confidence 35555567889999999865543 34444 33 689988543 333333221 234443321 111
Q ss_pred hcCCceeEEEecCCCC
Q 019550 174 KRNEKFDVIFGDLADP 189 (339)
Q Consensus 174 ~~~~~yDvIi~D~~d~ 189 (339)
..-..+|+||+-..++
T Consensus 66 ~~l~~adlViaaT~d~ 81 (202)
T PRK06718 66 SDIVDAFLVIAATNDP 81 (202)
T ss_pred hhcCCceEEEEcCCCH
Confidence 1125689988876544
No 386
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.26 E-value=4.1 Score=37.13 Aligned_cols=71 Identities=27% Similarity=0.350 Sum_probs=48.1
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH--HHHhcC-CceeE
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA--ELEKRN-EKFDV 181 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~--~l~~~~-~~yDv 181 (339)
++++++|+| ++.+++.+.+ . ...|+++|.|++.++....- ..-.+++++|+.+ .|++.. ..+|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~-~-g~~Vv~Id~d~~~~~~~~~~---------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE-E-GHNVVLIDRDEERVEEFLAD---------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh-C-CCceEEEEcCHHHHHHHhhh---------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 478999998 4445555555 2 35899999999987752220 1346778888754 455543 78999
Q ss_pred EEecCCC
Q 019550 182 IFGDLAD 188 (339)
Q Consensus 182 Ii~D~~d 188 (339)
++....+
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 9988764
No 387
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.20 E-value=0.62 Score=43.07 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred CCeEEEEecchhHHHHHHHhcCC--------CCEEEEEEcCHHHHHHHHHhhhh
Q 019550 106 PKTVFIMGGGEGSAAREALKHKS--------LEKVVMCDIDQEVVDFCRRFLTV 151 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~--------~~~v~~VEid~~vi~~ar~~f~~ 151 (339)
+-+|+++|+|.|.+++-++++.. ..+++.||++|.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999998887422 35899999999999988888753
No 388
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.17 E-value=5.8 Score=39.50 Aligned_cols=73 Identities=23% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH--HHHhc-CCce
Q 019550 105 NPKTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA--ELEKR-NEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~--~l~~~-~~~y 179 (339)
..++++++|+|.=+ +++.+.+ . ...++++|.|++.++..++.+ +.+.++.+|+.+ .|... -+++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~-~-~~~v~vid~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEK-E-GYSVKLIERDPERAEELAEEL---------PNTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-C-CCeEEEEECCHHHHHHHHHHC---------CCCeEEECCCCCHHHHHhcCCccC
Confidence 36789999997433 2232222 2 357999999999888766542 346788888853 34333 3679
Q ss_pred eEEEecCCC
Q 019550 180 DVIFGDLAD 188 (339)
Q Consensus 180 DvIi~D~~d 188 (339)
|.|++-..+
T Consensus 299 ~~vi~~~~~ 307 (453)
T PRK09496 299 DAFIALTND 307 (453)
T ss_pred CEEEECCCC
Confidence 998886654
No 389
>PRK10458 DNA cytosine methylase; Provisional
Probab=85.16 E-value=3.3 Score=42.09 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=79.7
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHH-------------
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAEL------------- 172 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l------------- 172 (339)
.-+++++-||.|++...+.. .+..-|-++|+|+...+.-+.++.. +|..+++.+|..+.-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~-aG~~~v~a~Eid~~A~~TY~~N~~~------~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEA-IGGQCVFTSEWNKHAVRTYKANWYC------DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHH-cCCEEEEEEechHHHHHHHHHHcCC------CCccceeccChhhCccccccccchhhhh
Confidence 34899999999999987765 4666778999999999988887632 233344445554431
Q ss_pred ---HhcCCceeEEEecCCC-CCC-CCc----------------cccCCcHHHHHHHHccccCCCcEEEEecCCCCcc--C
Q 019550 173 ---EKRNEKFDVIFGDLAD-PVE-GGP----------------CYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIF--T 229 (339)
Q Consensus 173 ---~~~~~~yDvIi~D~~d-~~~-~~p----------------~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~--~ 229 (339)
.......|+++.-+|- +.. .+. -..| -.+|++. + +.++|.-+++=|+. ++. .
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~L-f~~~~ri-i-~~~kPk~fvlENV~--gl~s~~ 235 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTL-FFDVARI-I-DAKRPAIFVLENVK--NLKSHD 235 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccH-HHHHHHH-H-HHhCCCEEEEeCcH--hhhccc
Confidence 1112368999888762 211 010 0112 1466664 4 46788766654542 111 1
Q ss_pred chhhHHHHHHHHHhHCCce
Q 019550 230 HKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 230 ~~~~~~~i~~~l~~~F~~v 248 (339)
....+..+.+.|.+..-.+
T Consensus 236 ~g~~f~~i~~~L~~lGY~v 254 (467)
T PRK10458 236 KGKTFRIIMQTLDELGYDV 254 (467)
T ss_pred ccHHHHHHHHHHHHcCCeE
Confidence 2346778888887765554
No 390
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.13 E-value=11 Score=36.57 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=34.2
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHh
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRF 148 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~ 148 (339)
...+||+.|+|. |.++.++++..+..+|++++.+++-.+.++++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 457899998753 44556677777766899999999999988774
No 391
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.09 E-value=22 Score=34.42 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=71.1
Q ss_pred CCCCeEEEEecchhHHHHHH-HhcCCCCEEEEEEcCHHHHHHHHHhhh---hhccccC-CCCeEEEEccHHHHHHhcCCc
Q 019550 104 QNPKTVFIMGGGEGSAAREA-LKHKSLEKVVMCDIDQEVVDFCRRFLT---VNQEAFC-SKKLNLVVNDAKAELEKRNEK 178 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~~ar~~f~---~~~~~~~-~~rv~v~~~D~~~~l~~~~~~ 178 (339)
..+.+|.+||+|.-+.+... +...+ .++.+..+++.++..++.-. ....... .+++++ ..|..+.+ +.
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a~----~~ 77 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEAA----NC 77 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHHH----hc
Confidence 34568999999966554332 22233 47777799999887776421 1100000 123332 34433322 45
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcE-EEEecCCCCccCchhhHHHHHHHHHhHCCceEEEEEeecc
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGI-FVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPS 257 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGi-lv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~~~iP~ 257 (339)
.|+|++-.+.. +.++.++. ++..|+++.. +.++-|-. ......+.+.+++.++........-|+
T Consensus 78 aDlVilavps~---------~~~~vl~~-i~~~l~~~~~vIsl~kGi~-----~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------GFRGVLTE-LAKELRPWVPVVSLVKGLE-----QGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------HHHHHHHH-HHhhcCCCCEEEEEEeCCc-----CCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 79999887622 35678888 7888888763 34443321 111223334455555533322334576
Q ss_pred c
Q 019550 258 F 258 (339)
Q Consensus 258 ~ 258 (339)
+
T Consensus 143 ~ 143 (341)
T PRK12439 143 I 143 (341)
T ss_pred H
Confidence 5
No 392
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.06 E-value=6 Score=37.21 Aligned_cols=100 Identities=12% Similarity=0.268 Sum_probs=60.0
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh---------ccccC-------CCCeEEEEccH
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN---------QEAFC-------SKKLNLVVNDA 168 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~---------~~~~~-------~~rv~v~~~D~ 168 (339)
++|.+||+| ++.++..+++ .+ .+|+++|.+++.++.+++..... ..... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~-~G-~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR-TG-YDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh-cC-CeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 689999999 4455555555 33 58999999999998765532210 00000 0122222 232
Q ss_pred HHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 169 KAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 169 ~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+-+ +..|+||.-.+... -...++|+. +.+.++++.+++.++
T Consensus 81 -~~~----~~aDlVieav~e~~-------~~k~~~~~~-l~~~~~~~~il~S~t 121 (291)
T PRK06035 81 -ESL----SDADFIVEAVPEKL-------DLKRKVFAE-LERNVSPETIIASNT 121 (291)
T ss_pred -HHh----CCCCEEEEcCcCcH-------HHHHHHHHH-HHhhCCCCeEEEEcC
Confidence 212 34799999876432 014578888 788888888877554
No 393
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.95 E-value=5 Score=37.82 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-----c-cccCC-------CCeEEEEccHHH
Q 019550 106 PKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-----Q-EAFCS-------KKLNLVVNDAKA 170 (339)
Q Consensus 106 p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-----~-~~~~~-------~rv~v~~~D~~~ 170 (339)
-++|.+||+| +..++..+++. ..+|+++|.+++.++.+++.+... . ..... .++. ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999999 55566666653 368999999999987665543211 0 00000 1122 22332 2
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecC
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAG 223 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~ 223 (339)
-+ +.-|+||.-.++.. . ....+|+. +.+.++++.+++.++.
T Consensus 80 ~~----~~aD~Vieav~e~~--~-----~k~~v~~~-l~~~~~~~~il~s~tS 120 (295)
T PLN02545 80 EL----RDADFIIEAIVESE--D-----LKKKLFSE-LDRICKPSAILASNTS 120 (295)
T ss_pred Hh----CCCCEEEEcCccCH--H-----HHHHHHHH-HHhhCCCCcEEEECCC
Confidence 22 45799999887432 0 13467777 6778888888876654
No 394
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=84.92 E-value=4.4 Score=32.01 Aligned_cols=90 Identities=22% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
-+.++||++|+|.-+..+.-.-....++|+++..+. +.++ .++++...+. +..-..+|+|+
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~------------~~i~~~~~~~----~~~l~~~~lV~ 65 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE------------GLIQLIRREF----EEDLDGADLVF 65 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH------------TSCEEEESS-----GGGCTTESEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh------------hHHHHHhhhH----HHHHhhheEEE
Confidence 467899999999777765444334458999988876 2222 3455554442 22235689999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
....++. .....++. .+.-|+++-....|
T Consensus 66 ~at~d~~--------~n~~i~~~-----a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 66 AATDDPE--------LNEAIYAD-----ARARGILVNVVDDP 94 (103)
T ss_dssp E-SS-HH--------HHHHHHHH-----HHHTTSEEEETT-C
T ss_pred ecCCCHH--------HHHHHHHH-----HhhCCEEEEECCCc
Confidence 8766542 12344443 34467887544444
No 395
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=84.70 E-value=0.53 Score=45.62 Aligned_cols=81 Identities=23% Similarity=0.160 Sum_probs=55.3
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHH-------HHhhhhhccccCCCCeEEEEccHHHHHHhcC
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFC-------RRFLTVNQEAFCSKKLNLVVNDAKAELEKRN 176 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~a-------r~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~ 176 (339)
.+.+-|+|=-.|+|++...+++ ++ +-|.+-|||-.+++.- +.+|+..+. .+-=+-++.+|.-.---...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~-FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~--~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAH-FG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS--SSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred CCCCEEecCccccCceeeehhh-hc-ceeeccccchheeecccCCCcchhHhHHHhCC--cchhhheeeecccCcchhhc
Confidence 3456689988899998876665 65 6899999999999843 334543322 12235677787544322235
Q ss_pred CceeEEEecCCC
Q 019550 177 EKFDVIFGDLAD 188 (339)
Q Consensus 177 ~~yDvIi~D~~d 188 (339)
..||.||+|++-
T Consensus 283 ~~fDaIvcDPPY 294 (421)
T KOG2671|consen 283 LKFDAIVCDPPY 294 (421)
T ss_pred ceeeEEEeCCCc
Confidence 789999999983
No 396
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=84.70 E-value=13 Score=35.84 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=58.3
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cCCceeEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~~~yDvI 182 (339)
..++||+.|+|. |..+..+++..+...+++++.+++-.++++++ ... ..+ .....+..+.+.. ..+.+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~-~~i-----~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT-HVI-----NPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc-EEe-----cCCCcCHHHHHHHHhCCCCcEE
Confidence 457899997653 55556677777766899999999888877764 210 000 0001122222322 24569988
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+--...+ ..+.. +.+.|+++|.++.-.
T Consensus 259 ld~~g~~------------~~~~~-~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTGVP------------AVIEQ-AVDALAPRGTLALVG 285 (365)
T ss_pred EECCCCc------------HHHHH-HHHHhccCCEEEEeC
Confidence 7543211 23445 567899999988643
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=84.67 E-value=12 Score=30.92 Aligned_cols=84 Identities=11% Similarity=0.266 Sum_probs=48.7
Q ss_pred CCCeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHH-HHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVD-FCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~-~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
+.++||+||+|+-+ .+..++. .+..+|+++--+.+=.+ +++++ + ...++++.-+-.. .....+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~~ra~~l~~~~-~-------~~~~~~~~~~~~~---~~~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTPERAEALAEEF-G-------GVNIEAIPLEDLE---EALQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSHHHHHHHHHHH-T-------GCSEEEEEGGGHC---HHHHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHc-C-------ccccceeeHHHHH---HHHhhCCe
Confidence 57899999987433 2233333 57788999999966443 44444 1 2445555433222 12246999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHH
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYER 206 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~ 206 (339)
||.-.+.+. ...+.+.+..
T Consensus 79 vI~aT~~~~------~~i~~~~~~~ 97 (135)
T PF01488_consen 79 VINATPSGM------PIITEEMLKK 97 (135)
T ss_dssp EEE-SSTTS------TSSTHHHHTT
T ss_pred EEEecCCCC------cccCHHHHHH
Confidence 998877442 2455555554
No 398
>PRK13699 putative methylase; Provisional
Probab=84.47 E-value=2.5 Score=38.62 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=38.8
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV 151 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~ 151 (339)
.+...|||--+|+|+++..+.+. ..+..++|++++..+++.+.+..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHH
Confidence 45667999999999999987773 36788999999999999888753
No 399
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.41 E-value=9 Score=36.40 Aligned_cols=97 Identities=23% Similarity=0.274 Sum_probs=59.6
Q ss_pred CCCCeEEEEec--chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHh-cCCce
Q 019550 104 QNPKTVFIMGG--GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEK-RNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~-~~~~y 179 (339)
...++||+.|+ |-|..+.++++..+. +|+++..+++-.+.+++.++.. .-+.... .|..+.+.. ..+.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFD------DAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCc------eeEEcCCcccHHHHHHHhCCCCc
Confidence 34678999985 567777788887764 6888888888888887743321 0011011 133333333 23569
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+|+ |.. +. ..++. +.+.|+++|.++.-
T Consensus 223 d~v~-d~~-----g~-------~~~~~-~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYF-DNV-----GG-------KMLDA-VLLNMNLHGRIAAC 250 (338)
T ss_pred EEEE-ECC-----CH-------HHHHH-HHHHhccCcEEEEe
Confidence 9887 433 11 22445 56789999998854
No 400
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.01 E-value=8.5 Score=38.53 Aligned_cols=89 Identities=12% Similarity=0.202 Sum_probs=53.6
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++|+++|+|.=+ .....++..+. +|+++|+||.-.+.|++. +. +.. +..+.+ +..|+|+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~-G~----------~~~--~~~e~v----~~aDVVI 262 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME-GY----------EVM--TMEEAV----KEGDIFV 262 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc-CC----------EEc--cHHHHH----cCCCEEE
Confidence 46899999999644 34445555664 899999999888877764 11 111 111222 3579988
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.-... ...+.....+.+++||+++ +.+.
T Consensus 263 ~atG~------------~~~i~~~~l~~mk~Ggilv-nvG~ 290 (413)
T cd00401 263 TTTGN------------KDIITGEHFEQMKDGAIVC-NIGH 290 (413)
T ss_pred ECCCC------------HHHHHHHHHhcCCCCcEEE-EeCC
Confidence 64321 1223321256789999886 4443
No 401
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.99 E-value=9.3 Score=36.35 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=58.2
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccH---HHHHHh-c-CC
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDA---KAELEK-R-NE 177 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~---~~~l~~-~-~~ 177 (339)
.+.++||+.|+|+ |..+.++++..+...|.++.-+++-.+.+++. +.. .-+.....+. .+.+.. . .+
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~------~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT------HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc------EEeccccccchhHHHHHHHHhCCC
Confidence 4467899987665 66667777877755588998888877777664 211 0011111121 122222 2 34
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.+|+|+-.... ....+. +.+.|+++|.++.-
T Consensus 234 ~~d~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 264 (343)
T cd05285 234 GPDVVIECTGA------------ESCIQT-AIYATRPGGTVVLV 264 (343)
T ss_pred CCCEEEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 59988764331 124555 56789999998754
No 402
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=83.90 E-value=5.8 Score=40.72 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccC-------CCCeEEEEccHH
Q 019550 105 NPKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFC-------SKKLNLVVNDAK 169 (339)
Q Consensus 105 ~p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~-------~~rv~v~~~D~~ 169 (339)
+-++|-+||+| +++++..+++ . .-.|++.|.+++.++.++++.... .+.+. -.|++.. .|.
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~-a-G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~- 81 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQ-A-GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL- 81 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-
Confidence 45789999999 4456666665 2 468999999999998876665311 00000 0134433 232
Q ss_pred HHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 170 AELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 170 ~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+-+ ...|+||--.++... ....+|+. +.+.++++.++++|+.+
T Consensus 82 ~~~----~~aDlViEav~E~~~-------vK~~vf~~-l~~~~~~~ailasntSt 124 (507)
T PRK08268 82 ADL----ADCDLVVEAIVERLD-------VKQALFAQ-LEAIVSPDCILATNTSS 124 (507)
T ss_pred HHh----CCCCEEEEcCcccHH-------HHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 222 357999998886431 24567777 67778888888777643
No 403
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.90 E-value=17 Score=34.86 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=48.2
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
..+.+|.+||+|. |......+...+. .++..+|++++.++.-..-+.... .+. .++++..+|-.+ + +..|+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~-~~~-~~~~i~~~~~~~-~----~~adi 76 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAV-PFT-SPTKIYAGDYSD-C----KDADL 76 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhc-ccc-CCeEEEeCCHHH-h----CCCCE
Confidence 4567999999986 5555555544454 479999998776543222222111 121 346666665322 2 45799
Q ss_pred EEecCCCCC
Q 019550 182 IFGDLADPV 190 (339)
Q Consensus 182 Ii~D~~d~~ 190 (339)
||+-.-.|.
T Consensus 77 vIitag~~~ 85 (315)
T PRK00066 77 VVITAGAPQ 85 (315)
T ss_pred EEEecCCCC
Confidence 999776544
No 404
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=83.80 E-value=4.3 Score=39.94 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=24.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid 138 (339)
...+||++|+|+ |+.....+...+..+++.+|-|
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 457899999984 3333334444688999999988
No 405
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=83.69 E-value=5.4 Score=42.76 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCC------------CCeEEEEccHHH
Q 019550 106 PKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCS------------KKLNLVVNDAKA 170 (339)
Q Consensus 106 p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~------------~rv~v~~~D~~~ 170 (339)
.++|-+||+| +++++..++. . .-+|+.+|.+++.++.++++.... ....+. .+++.. .|. +
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~-~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 388 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSAS-K-GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A 388 (714)
T ss_pred cceEEEECCchHHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H
Confidence 4679999999 4445555555 3 478999999999998877665311 000001 133322 121 1
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
-+ ...|+||=..+... . ..++.|+. +.+.++|+.+|+.|+.+
T Consensus 389 ~~----~~aDlViEav~E~l--~-----~K~~vf~~-l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 389 GF----DNVDIVVEAVVENP--K-----VKAAVLAE-VEQHVREDAILASNTST 430 (714)
T ss_pred Hh----cCCCEEEEcCcccH--H-----HHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 11 45788888877432 1 25688999 79999999999998653
No 406
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=83.63 E-value=5.8 Score=40.59 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=67.6
Q ss_pred CeEEEEecchhHHHHHHHhcC----CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH-HHHhcCCceeE
Q 019550 107 KTVFIMGGGEGSAAREALKHK----SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA-ELEKRNEKFDV 181 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~----~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~-~l~~~~~~yDv 181 (339)
..|.+.-||+|++..+..++. ....+++-|+.+.+..+|+.++-.... ..+.+++..+|... +-.....+||+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--DYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC--CccccCcccCCcCCCccccccccCCE
Confidence 579999999999987655422 125689999999999999998654321 11233333344322 10012356999
Q ss_pred EEecCCCCCC--CC--cc---------------ccCCcHHHHHHHHccccCCCcEEE
Q 019550 182 IFGDLADPVE--GG--PC---------------YQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 182 Ii~D~~d~~~--~~--p~---------------~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
|+.+++.... .+ |+ ..--...|+.. +..+|++||...
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h-~~~~L~~gG~~a 352 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLH-ALYVLGQEGTAA 352 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHH-HHHhcCCCCeEE
Confidence 9999974321 01 10 00013467777 678999999643
No 407
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=83.50 E-value=38 Score=33.38 Aligned_cols=117 Identities=14% Similarity=0.206 Sum_probs=71.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHH-HHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQE-VVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~-vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..|.|+++|-|..+=+......--.++|.+.|+||- .++++- +.+++...+ ...+.-|++|
T Consensus 208 aGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~M------------dGf~V~~m~------~Aa~~gDifi 269 (420)
T COG0499 208 AGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAM------------DGFRVMTME------EAAKTGDIFV 269 (420)
T ss_pred cCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhh------------cCcEEEEhH------HhhhcCCEEE
Confidence 468899999887655544333233578999999984 333332 233444422 2223458777
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCceEEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYT 252 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v~~~~ 252 (339)
.-.-.. ...+.|-|.. ++ +|.++.|.|+...-.....+.+.....+++-|.|..|.
T Consensus 270 T~TGnk-------dVi~~eh~~~-Mk-----DgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~ 325 (420)
T COG0499 270 TATGNK-------DVIRKEHFEK-MK-----DGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYE 325 (420)
T ss_pred EccCCc-------CccCHHHHHh-cc-----CCeEEecccccceeccHHHHHHhhhhHhccccCceEEE
Confidence 654322 3345666665 33 67778899876433344556666667788889988886
No 408
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.48 E-value=29 Score=33.36 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=67.1
Q ss_pred ceEEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhH--HHHHHHhcCCCCEEEEEEc
Q 019550 61 QDIALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGS--AAREALKHKSLEKVVMCDI 137 (339)
Q Consensus 61 q~I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEi 137 (339)
+.|.+++... |+.+ .+||...+..+.... -.++ ...+..++++++++||+|.=+ .+..++...+..+|.+++.
T Consensus 85 g~i~l~d~~t-G~p~a~~d~~~lT~~RTaa~--sala-~~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r 160 (325)
T PRK08618 85 GTVILSDFET-GEVLAILDGTYLTQIRTGAL--SGVA-TKYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR 160 (325)
T ss_pred EEEEEEeCCC-CceEEEEccchhhhhhHHHH--HHHH-HHHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC
Confidence 4566676654 5544 678887776654211 1121 123344678899999998544 2333444567789999999
Q ss_pred CHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC
Q 019550 138 DQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 138 d~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 188 (339)
+++-.+...+.+.... .-++. ...|..+.+ ...|+|++-.+.
T Consensus 161 ~~~~a~~~~~~~~~~~----~~~~~-~~~~~~~~~----~~aDiVi~aT~s 202 (325)
T PRK08618 161 TFEKAYAFAQEIQSKF----NTEIY-VVNSADEAI----EEADIIVTVTNA 202 (325)
T ss_pred CHHHHHHHHHHHHHhc----CCcEE-EeCCHHHHH----hcCCEEEEccCC
Confidence 9876654444332110 11233 246655544 358999987663
No 409
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.36 E-value=30 Score=33.09 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=65.0
Q ss_pred ceEEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHH--HHHhcCCCCEEEEEEc
Q 019550 61 QDIALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAR--EALKHKSLEKVVMCDI 137 (339)
Q Consensus 61 q~I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~--~l~~~~~~~~v~~VEi 137 (339)
+.|.+++... |+.+ ++||...+..+.... -.+. .-.+..++.++|++||+|.=+... .++...+..+|.++..
T Consensus 83 g~v~l~d~~t-G~p~ai~d~~~lT~~RTaa~--sala-~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R 158 (314)
T PRK06141 83 STYLLFDGRT-GEPLALVDGTELTARRTAAA--SALA-ASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR 158 (314)
T ss_pred EEEEEEECCC-CCEEEEEcCcchhcchhHHH--HHHH-HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3466666654 5544 679988777765321 1111 112344678999999998555443 2233456789999999
Q ss_pred CHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 138 DQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 138 d~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+++-.+...+.+... ..++.. ..+..+.+ ...|+|++-.+
T Consensus 159 s~~~a~~~a~~~~~~-----g~~~~~-~~~~~~av----~~aDIVi~aT~ 198 (314)
T PRK06141 159 DPAKAEALAAELRAQ-----GFDAEV-VTDLEAAV----RQADIISCATL 198 (314)
T ss_pred CHHHHHHHHHHHHhc-----CCceEE-eCCHHHHH----hcCCEEEEeeC
Confidence 977655444433221 112333 35544444 45899965544
No 410
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.30 E-value=6.7 Score=36.82 Aligned_cols=92 Identities=14% Similarity=0.210 Sum_probs=51.9
Q ss_pred eEEEEecchhHH--HHHHHhcCCCCEEEEEEcCHHHHHHHHHhh-hhhccccCCCCeEE---EEccHHHHHHhcCCceeE
Q 019550 108 TVFIMGGGEGSA--AREALKHKSLEKVVMCDIDQEVVDFCRRFL-TVNQEAFCSKKLNL---VVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 108 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ar~~f-~~~~~~~~~~rv~v---~~~D~~~~l~~~~~~yDv 181 (339)
+|++||+|.-+. +..+.+ . ..+|+.++. ++-++..++.- ..... .....+ ...|. ....+.+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~-~-g~~V~~~~r-~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~----~~~~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE-A-GRDVTFLVR-PKRAKALRERGLVIRSD---HGDAVVPGPVITDP----EELTGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH-C-CCceEEEec-HHHHHHHHhCCeEEEeC---CCeEEecceeecCH----HHccCCCCE
Confidence 699999986544 333333 3 357999998 66666655531 11100 111111 11221 122367999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
|++-..... ..+.++. ++..+.++.+++
T Consensus 72 vilavk~~~---------~~~~~~~-l~~~~~~~~~ii 99 (305)
T PRK12921 72 VILAVKAYQ---------LDAAIPD-LKPLVGEDTVII 99 (305)
T ss_pred EEEEecccC---------HHHHHHH-HHhhcCCCCEEE
Confidence 998876432 3577777 677888877654
No 411
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=83.15 E-value=19 Score=33.86 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=37.6
Q ss_pred cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHH-HHHHhcCCCCEEEEEEcCHHH
Q 019550 78 DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAA-REALKHKSLEKVVMCDIDQEV 141 (339)
Q Consensus 78 dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~-~~l~~~~~~~~v~~VEid~~v 141 (339)
||.+....-|..-+.+.+.........+.++||+||+|+-+-+ ...+...+..+|+++..+++=
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~k 161 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDK 161 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHH
Confidence 5656565666544455554321111124678999998754433 233334677899999998653
No 412
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.10 E-value=5 Score=40.82 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=56.0
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEE-cCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCD-IDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VE-id~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
..-++|+|+.+|-|+++..+.. .++--+.+|= ..+..+.+.-+. . +-=+..|=.+-+...+.+||+|
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~-~~VWVMNVVP~~~~ntL~vIydR----------G-LIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALID-DPVWVMNVVPVSGPNTLPVIYDR----------G-LIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred cceeeeeeecccccHHHHHhcc-CCceEEEecccCCCCcchhhhhc----------c-cchhccchhhccCCCCcchhhe
Confidence 4567899999999999998876 3432222211 112222211111 0 1111123333344557899999
Q ss_pred EecCC-CCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLA-DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~-d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
=.+.- +... . .---...+-+ +.|+|+|+|.+++.
T Consensus 432 HA~~lfs~~~-~---rC~~~~illE-mDRILRP~G~~iiR 466 (506)
T PF03141_consen 432 HADGLFSLYK-D---RCEMEDILLE-MDRILRPGGWVIIR 466 (506)
T ss_pred ehhhhhhhhc-c---cccHHHHHHH-hHhhcCCCceEEEe
Confidence 77753 2211 1 1112355566 79999999999986
No 413
>PLN02256 arogenate dehydrogenase
Probab=83.02 E-value=44 Score=31.88 Aligned_cols=106 Identities=17% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCCeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
...+|.+||+| +|.+++.+.+ .+ .+|.+++.++. .+.++++ .+.. ..|..+.+. ...|+|
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~-~G-~~V~~~d~~~~-~~~a~~~-----------gv~~-~~~~~e~~~---~~aDvV 96 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVK-QG-HTVLATSRSDY-SDIAAEL-----------GVSF-FRDPDDFCE---EHPDVV 96 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh-CC-CEEEEEECccH-HHHHHHc-----------CCee-eCCHHHHhh---CCCCEE
Confidence 45689999998 4556665554 33 57999999874 2333332 1111 344333331 347999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHH-ccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCc
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERIL-KPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKH 247 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~-~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~ 247 (339)
++-.+.. ...++++. + ...++++. +++..++. -..+.+.+++.++.
T Consensus 97 ilavp~~---------~~~~vl~~-l~~~~l~~~~-iviDv~Sv--------K~~~~~~~~~~l~~ 143 (304)
T PLN02256 97 LLCTSIL---------STEAVLRS-LPLQRLKRST-LFVDVLSV--------KEFPKNLLLQVLPE 143 (304)
T ss_pred EEecCHH---------HHHHHHHh-hhhhccCCCC-EEEecCCc--------hHHHHHHHHHhCCC
Confidence 9976622 13466666 5 44577765 45565431 12455667776654
No 414
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.96 E-value=4.6 Score=40.01 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=47.2
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCceeEEE
Q 019550 107 KTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEKFDVIF 183 (339)
Q Consensus 107 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~yDvIi 183 (339)
++||+||||. |..+.+-+...+..+|++++.+++-.+.++... .++++.+.-|+.+. +...-..+|+||
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEecccChHHHHHHHhcCCEEE
Confidence 5899999963 333333333355589999999987776665542 34677777666543 322224569999
Q ss_pred ecCC
Q 019550 184 GDLA 187 (339)
Q Consensus 184 ~D~~ 187 (339)
.-++
T Consensus 74 n~~p 77 (389)
T COG1748 74 NAAP 77 (389)
T ss_pred EeCC
Confidence 8776
No 415
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=82.92 E-value=16 Score=35.25 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=57.6
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc--cHHHHHHh-cCCce
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN--DAKAELEK-RNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~--D~~~~l~~-~~~~y 179 (339)
....+||++|+| -|.++.++++..+..+|++++.+++-.+.+++. ... .-+..... |..+.+.. +.+.+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga~------~~i~~~~~~~~~~~~v~~~~~~g~ 257 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GAT------DCVNPKDHDKPIQQVLVEMTDGGV 257 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC------EEEcccccchHHHHHHHHHhCCCC
Confidence 346789999865 344455667777765899999999988888763 211 00111111 23333332 23469
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCC-cEEEEe
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDN-GIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g-Gilv~~ 221 (339)
|+|+--.. ++ ..++. +-+.|+++ |.++.-
T Consensus 258 d~vid~~g-----~~-------~~~~~-a~~~l~~~~G~~v~~ 287 (368)
T cd08300 258 DYTFECIG-----NV-------KVMRA-ALEACHKGWGTSVII 287 (368)
T ss_pred cEEEECCC-----Ch-------HHHHH-HHHhhccCCCeEEEE
Confidence 98875322 11 33454 45688887 888754
No 416
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=82.89 E-value=24 Score=33.33 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=39.0
Q ss_pred cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHHHHH-HhcCCCCEEEEEEcCHHHHH
Q 019550 78 DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAAREA-LKHKSLEKVVMCDIDQEVVD 143 (339)
Q Consensus 78 dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~~~l-~~~~~~~~v~~VEid~~vi~ 143 (339)
||.+....-|..-+.+.+... ....+.++||+||+|+-+-+... +...+..+|++++.+++=.+
T Consensus 101 ~g~l~G~NTD~~Gf~~~L~~~--~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~ 165 (283)
T PRK14027 101 TGHTTGHNTDVSGFGRGMEEG--LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQ 165 (283)
T ss_pred CCcEEEEcCCHHHHHHHHHhc--CcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence 666666666654444555421 11234678999999765544332 23356789999999865433
No 417
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.76 E-value=22 Score=28.11 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=69.2
Q ss_pred eEEEEecchhHHHH--HHHhcCCCCEEE-EEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 108 TVFIMGGGEGSAAR--EALKHKSLEKVV-MCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 108 ~VL~IG~G~G~~~~--~l~~~~~~~~v~-~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+|.+||+|..+... .+.+..+..+++ ++|.+++-.+.+.+.+.. . ...|..+.+... ..|+|++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~----------~-~~~~~~~ll~~~--~~D~V~I 68 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI----------P-VYTDLEELLADE--DVDAVII 68 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS----------E-EESSHHHHHHHT--TESEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc----------c-chhHHHHHHHhh--cCCEEEE
Confidence 68999998664433 334443455655 789999877766544332 2 667777777643 7999999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCCce
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHV 248 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~~v 248 (339)
..++.. -++. +...|+-|--+++.- | ...+.+..+++.+..++.--.+
T Consensus 69 ~tp~~~------------h~~~-~~~~l~~g~~v~~EK--P-~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 69 ATPPSS------------HAEI-AKKALEAGKHVLVEK--P-LALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp ESSGGG------------HHHH-HHHHHHTTSEEEEES--S-SSSSHHHHHHHHHHHHHHTSCE
T ss_pred ecCCcc------------hHHH-HHHHHHcCCEEEEEc--C-CcCCHHHHHHHHHHHHHhCCEE
Confidence 877432 1233 455666665555553 2 1345667777887777665443
No 418
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=82.20 E-value=2.5 Score=41.35 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=39.6
Q ss_pred CCCCCeEEEEecchhHHHHHHHhcC--------CCCEEEEEEcCHHHHHHHHHhhh
Q 019550 103 HQNPKTVFIMGGGEGSAAREALKHK--------SLEKVVMCDIDQEVVDFCRRFLT 150 (339)
Q Consensus 103 ~~~p~~VL~IG~G~G~~~~~l~~~~--------~~~~v~~VEid~~vi~~ar~~f~ 150 (339)
.|.|-.+++||.|.|.+++-+++.. ...++..||++|+..+.=|+.+.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 3567789999999999998887632 36789999999999988777764
No 419
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.17 E-value=19 Score=34.26 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=44.5
Q ss_pred CeEEEEecch-hHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 107 KTVFIMGGGE-GSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++|.+||+|. |......+...+. .+|..+|++++..+....-+.... .+.....++..+|..+ + ...|+||+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~~-l----~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYSD-C----KDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHHH-h----CCCCEEEE
Confidence 3799999985 4333333333444 489999999877554333222110 0112334555555322 2 46899999
Q ss_pred cCCCCC
Q 019550 185 DLADPV 190 (339)
Q Consensus 185 D~~d~~ 190 (339)
-...|.
T Consensus 75 tag~~~ 80 (306)
T cd05291 75 TAGAPQ 80 (306)
T ss_pred ccCCCC
Confidence 886554
No 420
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.00 E-value=7.6 Score=32.26 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred eEEEEecch-hH-HHHHHHhcCCCCEEEEEEcCH
Q 019550 108 TVFIMGGGE-GS-AAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 108 ~VL~IG~G~-G~-~~~~l~~~~~~~~v~~VEid~ 139 (339)
+||++|+|+ |+ ++..+++ .+..+++.+|-|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR-SGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence 589999983 33 3344444 6788999999883
No 421
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=81.97 E-value=2.5 Score=40.26 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-----CCc
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-----NEK 178 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~~ 178 (339)
....+|..||.|+..+..++.+. | .+|++||++|.-+.+-+-.+.... ++. .++|...|+... ..-
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~lklaA~R------~Lp-~h~dl~r~~a~a~t~~n~~~ 132 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNRLKLAAFR------HLP-SHEDLVRFFALAGTRRNSQA 132 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHHHHHHHHh------hcc-cchhhHHHhhhhcccccchh
Confidence 44678999999988788777774 4 689999999999988776654221 111 234777776542 245
Q ss_pred eeEEEecCCCC
Q 019550 179 FDVIFGDLADP 189 (339)
Q Consensus 179 yDvIi~D~~d~ 189 (339)
||+-+..--|+
T Consensus 133 yD~flae~lda 143 (414)
T COG5379 133 YDRFLAEHLDA 143 (414)
T ss_pred hhcccccccch
Confidence 88877755443
No 422
>PRK15076 alpha-galactosidase; Provisional
Probab=81.90 E-value=15 Score=36.88 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=44.7
Q ss_pred CeEEEEecch-hHHHHH---HH--hcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEE-EccHHHHHHhcCCce
Q 019550 107 KTVFIMGGGE-GSAARE---AL--KHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLV-VNDAKAELEKRNEKF 179 (339)
Q Consensus 107 ~~VL~IG~G~-G~~~~~---l~--~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~-~~D~~~~l~~~~~~y 179 (339)
.+|.+||+|+ |..... ++ ......+|+.+|+|++.++.++..+....... ....++. ..|..+-+. .-
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~-~~~~~i~~ttD~~eal~----dA 76 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL-GASAKITATTDRREALQ----GA 76 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhC----CC
Confidence 3799999998 543322 22 22334589999999998886655543221111 2335555 567545443 34
Q ss_pred eEEEecCC
Q 019550 180 DVIFGDLA 187 (339)
Q Consensus 180 DvIi~D~~ 187 (339)
|+|+.-.-
T Consensus 77 DfVv~ti~ 84 (431)
T PRK15076 77 DYVINAIQ 84 (431)
T ss_pred CEEeEeee
Confidence 77777654
No 423
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.83 E-value=10 Score=36.17 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-cC-CceeE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-RN-EKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~~-~~yDv 181 (339)
..++||+.|+| .|..+.++++..+...|.+++.+++-.+.++++ +.. .-+.....|..+.+.. .. +.+|+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~------~~i~~~~~~~~~~l~~~~~~~~~d~ 244 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GAT------IVLDPTEVDVVAEVRKLTGGGGVDV 244 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCC------EEECCCccCHHHHHHHHhCCCCCCE
Confidence 45789999764 233445556666655899999999888888764 211 1111122333333432 22 34999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+-....+ ..++. +.+.|+++|.++.-
T Consensus 245 vid~~g~~------------~~~~~-~~~~l~~~G~~v~~ 271 (351)
T cd08233 245 SFDCAGVQ------------ATLDT-AIDALRPRGTAVNV 271 (351)
T ss_pred EEECCCCH------------HHHHH-HHHhccCCCEEEEE
Confidence 88654311 23455 56789999998764
No 424
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=81.74 E-value=47 Score=35.55 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=53.6
Q ss_pred CeEEEEecch--hHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 107 KTVFIMGGGE--GSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 107 ~~VL~IG~G~--G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
++|.+||+|. +.+++.+.+ .+ ..+|+++|.+++-++.+++. ... +. ...|..+.+ +..|+|+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~-~G~~~~V~~~d~~~~~~~~a~~~-g~~-----~~----~~~~~~~~~----~~aDvVi 68 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRE-RGLAREVVAVDRRAKSLELAVSL-GVI-----DR----GEEDLAEAV----SGADVIV 68 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHh-cCCCCEEEEEECChhHHHHHHHC-CCC-----Cc----ccCCHHHHh----cCCCEEE
Confidence 6799999984 334454444 33 24699999999887776653 110 00 112322222 3579999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+-.+.. ...+.++. ++..++++-+ ++..
T Consensus 69 lavp~~---------~~~~vl~~-l~~~~~~~~i-i~d~ 96 (735)
T PRK14806 69 LAVPVL---------AMEKVLAD-LKPLLSEHAI-VTDV 96 (735)
T ss_pred ECCCHH---------HHHHHHHH-HHHhcCCCcE-EEEc
Confidence 987632 13577777 6777777644 4443
No 425
>PRK06046 alanine dehydrogenase; Validated
Probab=81.72 E-value=30 Score=33.26 Aligned_cols=114 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred ceEEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchh--HHHHHHHhcCCCCEEEEEEc
Q 019550 61 QDIALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEG--SAAREALKHKSLEKVVMCDI 137 (339)
Q Consensus 61 q~I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G--~~~~~l~~~~~~~~v~~VEi 137 (339)
+.|.+++... |+.+ .+||...+..+.... -.++ ...+..++++++.+||+|.= ..++.++..++...|.+++.
T Consensus 87 g~i~L~d~~t-G~p~aild~~~lT~~RTaA~--sala-~~~La~~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r 162 (326)
T PRK06046 87 AVIILNSPET-GFPLAIMDGTYLTDMRTGAA--GGVA-AKYLARKDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR 162 (326)
T ss_pred EEEEEEeCCC-CceEEEEcCccHHHHHHHHH--HHHH-HHHhCCCCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence 3566676654 5544 678887776654211 1121 12344567889999999852 23344444567789999999
Q ss_pred CHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC
Q 019550 138 DQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 138 d~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 188 (339)
+++-.+...+.+.... ..++. ...|..+.+ + .|+|++-.+.
T Consensus 163 ~~~~~~~~~~~~~~~~----~~~v~-~~~~~~~~l----~-aDiVv~aTps 203 (326)
T PRK06046 163 TKSSAEKFVERMSSVV----GCDVT-VAEDIEEAC----D-CDILVTTTPS 203 (326)
T ss_pred CHHHHHHHHHHHHhhc----CceEE-EeCCHHHHh----h-CCEEEEecCC
Confidence 9977766555443210 11233 245655544 2 7999986653
No 426
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.70 E-value=7.4 Score=36.41 Aligned_cols=89 Identities=19% Similarity=0.158 Sum_probs=55.0
Q ss_pred eEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 108 TVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 108 ~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+|.+||+| +|.+++.+.+ .+ .+|+++|.+++.++.+.+.-. +.....+. +.+ ...|+||+-
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g-~~V~~~d~~~~~~~~a~~~g~----------~~~~~~~~-~~~----~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LG-HTVYGVSRRESTCERAIERGL----------VDEASTDL-SLL----KDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CC-CEEEEEECCHHHHHHHHHCCC----------cccccCCH-hHh----cCCCEEEEc
Confidence 68999998 3566666655 33 579999999988877665311 11111221 212 457999998
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.+... ..++++. +...++++- +++..++
T Consensus 65 vp~~~---------~~~~~~~-l~~~l~~~~-ii~d~~S 92 (279)
T PRK07417 65 LPIGL---------LLPPSEQ-LIPALPPEA-IVTDVGS 92 (279)
T ss_pred CCHHH---------HHHHHHH-HHHhCCCCc-EEEeCcc
Confidence 87331 3466777 677787664 4455543
No 427
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.68 E-value=7.8 Score=37.35 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCCeEEEEec--chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-C-Ccee
Q 019550 105 NPKTVFIMGG--GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-N-EKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~-~~yD 180 (339)
..++||+.|+ |-|.++.++++..+. .+.++=-+++-.+.+++.... .-+.....|..+-+++. . +.+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd-------~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGAD-------HVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCC-------EEEcCCcccHHHHHHHHcCCCCce
Confidence 3678999994 567788999998876 444444444444477665321 12233444555555433 2 4699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+|+--.. .+.+.. ..+.|+++|.++.-.
T Consensus 214 vv~D~vG-------------~~~~~~-~l~~l~~~G~lv~ig 241 (326)
T COG0604 214 VVLDTVG-------------GDTFAA-SLAALAPGGRLVSIG 241 (326)
T ss_pred EEEECCC-------------HHHHHH-HHHHhccCCEEEEEe
Confidence 9875433 133444 457899999998754
No 428
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.67 E-value=19 Score=35.11 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=61.9
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCC-eEEEEccHHHHHHhcC-CceeEE
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKK-LNLVVNDAKAELEKRN-EKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~r-v~v~~~D~~~~l~~~~-~~yDvI 182 (339)
..+|.++|+|+ |..+..-++..+..+|.+||++++=+++|+++-.... + +++ .. |..+.+.... ...|..
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~--v-n~~~~~----~vv~~i~~~T~gG~d~~ 258 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHF--V-NPKEVD----DVVEAIVELTDGGADYA 258 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCcee--e-cchhhh----hHHHHHHHhcCCCCCEE
Confidence 46788888875 4445555666788999999999999999999843221 0 111 11 6666666543 356766
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+ |.. + +.+.++. ..+++..+|..++-.
T Consensus 259 ~-e~~-----G------~~~~~~~-al~~~~~~G~~v~iG 285 (366)
T COG1062 259 F-ECV-----G------NVEVMRQ-ALEATHRGGTSVIIG 285 (366)
T ss_pred E-Ecc-----C------CHHHHHH-HHHHHhcCCeEEEEe
Confidence 3 322 1 1245666 566777799776643
No 429
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.46 E-value=11 Score=35.73 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=49.8
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEE-EccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLV-VNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~-~~D~~~~l~~~~~~yDvI 182 (339)
.+++|++||.|.-+ .+...++..+ .+|++++.+++..+.++.. + .+.+ ..+..+. -..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~~-G----------~~~~~~~~l~~~----l~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITEM-G----------LSPFHLSELAEE----VGKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc-C----------CeeecHHHHHHH----hCCCCEE
Confidence 47899999998533 2333444455 5999999998766555442 1 1111 1222222 2469999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
|.-.+. .+.+.+. .+.++++++++
T Consensus 215 I~t~p~--------~~i~~~~-----l~~~~~g~vII 238 (296)
T PRK08306 215 FNTIPA--------LVLTKEV-----LSKMPPEALII 238 (296)
T ss_pred EECCCh--------hhhhHHH-----HHcCCCCcEEE
Confidence 986431 1233333 34577877665
No 430
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.45 E-value=17 Score=35.11 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=56.8
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE--ccHHHHHHh-cCCce
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV--NDAKAELEK-RNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~--~D~~~~l~~-~~~~y 179 (339)
....+||+.|+| -|.++..+++..+..+|++++.+++-.+.++++ +.. .-+.... .+..+.++. ..+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~-Ga~------~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF-GVT------EFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCc------eEEcccccchhHHHHHHHHhCCCC
Confidence 346789999865 233445666777766899999999998988774 211 0011111 112222322 23468
Q ss_pred eEEEecCCCCCCCCccccCCcHHHHHHHHccccCCC-cEEEEec
Q 019550 180 DVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDN-GIFVTQA 222 (339)
Q Consensus 180 DvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~g-Gilv~~~ 222 (339)
|+++--.. + ...... +.+.++++ |.+++..
T Consensus 259 d~vid~~G-----~-------~~~~~~-~~~~~~~~~g~~v~~g 289 (369)
T cd08301 259 DYSFECTG-----N-------IDAMIS-AFECVHDGWGVTVLLG 289 (369)
T ss_pred CEEEECCC-----C-------hHHHHH-HHHHhhcCCCEEEEEC
Confidence 97764322 1 134444 45678896 8887653
No 431
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=81.44 E-value=0.37 Score=45.80 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=60.2
Q ss_pred CCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 105 NPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
....|.|+=+|-|.+..-.+-+.++..|.++|.+|..++..|+....+.. ..|..++.+|-|.- ......|-|.+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V---~~r~~i~~gd~R~~--~~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV---MDRCRITEGDNRNP--KPRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch---HHHHHhhhcccccc--Cccccchheee
Confidence 44779999999999887344347889999999999999999999887643 56778888886532 23466888888
Q ss_pred cCC
Q 019550 185 DLA 187 (339)
Q Consensus 185 D~~ 187 (339)
-+-
T Consensus 269 GLl 271 (351)
T KOG1227|consen 269 GLL 271 (351)
T ss_pred ccc
Confidence 765
No 432
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.43 E-value=13 Score=34.85 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEcc---HHHHHHhcCCcee
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVND---AKAELEKRNEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D---~~~~l~~~~~~yD 180 (339)
...+||++|+|. |..+.++++..+...|.+++.+++-.+.++++- .. .++..+ ....-....+.+|
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG-AT---------ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC-Ce---------EEecCCCCCHHHHHHhcCCCCc
Confidence 457899998653 555666777666555889999998888876542 11 111111 1111111235699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+.-... .+..+. +.+.|+++|.++.-
T Consensus 229 ~v~~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATGV------------PKTLEQ-AIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCCC------------hHHHHH-HHHHHhcCCEEEEE
Confidence 99854321 134555 56789999998753
No 433
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=81.41 E-value=3.6 Score=37.83 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=40.7
Q ss_pred CCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 106 PKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 106 p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
-+++|++|+- +|......+... .+|+.|||.|.+.++.. +++++. .++...+..||+||
T Consensus 42 ~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll~------------~~i~F~-----~~~~~~~~~~DlII- 101 (252)
T PF06690_consen 42 FKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELLN------------ENIKFM-----EFRNGLEGNPDLII- 101 (252)
T ss_pred cceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHhc------------CCCcee-----eccCCCCCCCCEEE-
Confidence 3589999974 555555555422 38999999999987652 445444 33334456899876
Q ss_pred cCC
Q 019550 185 DLA 187 (339)
Q Consensus 185 D~~ 187 (339)
|.+
T Consensus 102 D~T 104 (252)
T PF06690_consen 102 DTT 104 (252)
T ss_pred ECC
Confidence 555
No 434
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=81.23 E-value=27 Score=32.85 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeE
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDv 181 (339)
....+||+.|+| -|..+..++++....+|+++.-+++-.+.++++ ... .. +.... .+..+.+....+.+|+
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~-g~~-~v-----~~~~~~~~~~~~v~~~~~~~d~ 233 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GAD-LT-----INSKRVEDVAKIIQEKTGGAHA 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc-CCc-EE-----ecccccccHHHHHHHhcCCCcE
Confidence 346789999854 234445555643235799999999988888664 221 00 11001 2223334333336887
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
++.+... .+.++. +.+.|+++|.++.-
T Consensus 234 vi~~~~~------------~~~~~~-~~~~l~~~G~~v~~ 260 (338)
T PRK09422 234 AVVTAVA------------KAAFNQ-AVDAVRAGGRVVAV 260 (338)
T ss_pred EEEeCCC------------HHHHHH-HHHhccCCCEEEEE
Confidence 7766442 144566 56789999998754
No 435
>PRK07589 ornithine cyclodeaminase; Validated
Probab=80.88 E-value=34 Score=33.37 Aligned_cols=111 Identities=20% Similarity=0.195 Sum_probs=65.1
Q ss_pred EEEEEeCCceEE-EEEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCH
Q 019550 63 IALLDTKRFGKV-LVIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 63 I~V~e~~~~g~~-L~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~ 139 (339)
+.+++... |.. ..+||...+..+.... -.+. .-.+..++.+++++||+|.=+ .++.++..++..+|.+...++
T Consensus 89 v~L~D~~T-G~p~Alldg~~lT~~RTaA~--sala-~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~ 164 (346)
T PRK07589 89 GVLADVDT-GYPLLLSEMTLLTALRTAAT--SALA-AKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDP 164 (346)
T ss_pred EEEEECCC-CCEEEEEcCccHHHHHHHHH--HHHH-HHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCH
Confidence 44666554 443 3678877766654211 1111 122344678999999998443 223444456789999999998
Q ss_pred HHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 140 EVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 140 ~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+-.+...+.+... .-++.+ ..|..+-+ +.-|+|++--+
T Consensus 165 ~~a~~~~~~~~~~-----~~~v~~-~~~~~~av----~~ADIIvtaT~ 202 (346)
T PRK07589 165 AATAKLARNLAGP-----GLRIVA-CRSVAEAV----EGADIITTVTA 202 (346)
T ss_pred HHHHHHHHHHHhc-----CCcEEE-eCCHHHHH----hcCCEEEEecC
Confidence 8766544444321 122333 45655544 34799998765
No 436
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.83 E-value=14 Score=33.71 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
.+..+||+.|+|. |..+..+++..+..+|.+++.+++-.+.++++- .. ..+ .... .... ..+.+|+|
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g-~~------~~~--~~~~-~~~~--~~~~~d~v 163 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG-PA------DPV--AADT-ADEI--GGRGADVV 163 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC-CC------ccc--cccc-hhhh--cCCCCCEE
Confidence 3467899998765 555666677666545999999988888887752 00 000 0000 0111 23568988
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+..... ....+. ..+.|+++|.++.-.
T Consensus 164 l~~~~~------------~~~~~~-~~~~l~~~g~~~~~g 190 (277)
T cd08255 164 IEASGS------------PSALET-ALRLLRDRGRVVLVG 190 (277)
T ss_pred EEccCC------------hHHHHH-HHHHhcCCcEEEEEe
Confidence 754331 123444 467899999987543
No 437
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=80.78 E-value=16 Score=34.55 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=56.1
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh--cCCceeE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK--RNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~--~~~~yDv 181 (339)
+..+||+.|+|. |..+.++++..+..+|++++.++.-.+.++++. . +.-+.....+....+.. ....+|+
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~------~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLG-A------THTVNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC-C------CceeccccccHHHHHHHHhCCCCCCE
Confidence 457888876542 223455667676567889999988888777642 1 11122222333333322 2346998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+--.. + ...++. +.+.|+++|.++.-
T Consensus 239 vld~~g-----~-------~~~~~~-~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAVG-----I-------PATFEL-CQELVAPGGHIANV 265 (345)
T ss_pred EEECCC-----C-------HHHHHH-HHHhccCCcEEEEe
Confidence 873321 1 123555 56789999998753
No 438
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.73 E-value=16 Score=35.09 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=57.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDvI 182 (339)
+..+|.+||+|. |.....++...+...+..+|++++..+.-.--+... ........++.. +|- +-+ ..-|+|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~-~~l----~~ADiV 77 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNY-EDI----KDSDVV 77 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCH-HHh----CCCCEE
Confidence 456899999998 777666665555467999999986644211101111 111123345554 552 233 346999
Q ss_pred EecCCCCCCCCcc-cc------CCcHHHHHHHHccccCCCcEEEE
Q 019550 183 FGDLADPVEGGPC-YQ------LYTKSFYERILKPKLNDNGIFVT 220 (339)
Q Consensus 183 i~D~~d~~~~~p~-~~------L~t~ef~~~~~~~~L~~gGilv~ 220 (339)
+.-.-.+...+.. .. -.-.++.+. +. ...|++++++
T Consensus 78 Vitag~~~~~g~~r~dll~~n~~i~~~i~~~-i~-~~~p~a~viv 120 (319)
T PTZ00117 78 VITAGVQRKEEMTREDLLTINGKIMKSVAES-VK-KYCPNAFVIC 120 (319)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HH-HHCCCeEEEE
Confidence 9877433211110 00 012355555 44 3478886554
No 439
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.50 E-value=19 Score=36.06 Aligned_cols=100 Identities=16% Similarity=0.311 Sum_probs=54.2
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHH-HHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVD-FCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~-~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
..++|+++|+|.=+ .....+...+..+|++++.+++-.+ +++++ + ..+ +...|..+.+ ..+|+|
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g--------~~~-~~~~~~~~~l----~~aDvV 246 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-G--------GEA-IPLDELPEAL----AEADIV 246 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-C--------CcE-eeHHHHHHHh----ccCCEE
Confidence 46789999987433 2233333456678999999976544 45443 1 111 1113332222 468999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
|.-.+.+. .+.+.+.++. ..+.=+.++.+++....|
T Consensus 247 I~aT~s~~------~~i~~~~l~~-~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 247 ISSTGAPH------PIIGKGMVER-ALKARRHRPLLLVDLAVP 282 (423)
T ss_pred EECCCCCC------cEEcHHHHHH-HHhhccCCCeEEEEeCCC
Confidence 98765432 3456666665 311111244666665444
No 440
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=80.45 E-value=34 Score=32.89 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=44.1
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCCCCeEEEE-ccHHHHHHhcCCceeEE
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCSKKLNLVV-NDAKAELEKRNEKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~~rv~v~~-~D~~~~l~~~~~~yDvI 182 (339)
.++|.+||+|. |......+...+...+..+|++++..+. + -+... ...+.....++.. +|. +-+ +..|+|
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~-~ld~~~~~~~~~~~~~I~~~~d~-~~l----~~aDiV 78 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-K-ALDISHSNVIAGSNSKVIGTNNY-EDI----AGSDVV 78 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-H-HHHHHhhhhccCCCeEEEECCCH-HHh----CCCCEE
Confidence 46899999997 4444444444554579999999986421 1 11110 0111233456664 663 323 457999
Q ss_pred EecCCCC
Q 019550 183 FGDLADP 189 (339)
Q Consensus 183 i~D~~d~ 189 (339)
|.-...+
T Consensus 79 I~tag~~ 85 (321)
T PTZ00082 79 IVTAGLT 85 (321)
T ss_pred EECCCCC
Confidence 9866543
No 441
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.18 E-value=5.1 Score=42.96 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=64.6
Q ss_pred CeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccC-------CCCeEEEEccHHHH
Q 019550 107 KTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFC-------SKKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~-------~~rv~v~~~D~~~~ 171 (339)
++|.+||+|. .+++..++. . .-+|+.+|++++.++.+++..... ...+. -.|+++. .|. +-
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~-~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS-K-GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AG 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh-C-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 6899999996 344444444 3 478999999999998877664321 00000 1234332 222 11
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+ ..-|+||=..+... -..++.|+. +.+.++|+-+|+.|+.+
T Consensus 390 ~----~~aDlViEav~E~l-------~~K~~vf~~-l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 390 F----ERVDVVVEAVVENP-------KVKAAVLAE-VEQKVREDTILASNTST 430 (715)
T ss_pred h----cCCCEEEecccCcH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 2 45788887776432 125688898 78999999999988643
No 442
>PRK10083 putative oxidoreductase; Provisional
Probab=80.06 E-value=14 Score=34.88 Aligned_cols=97 Identities=21% Similarity=0.226 Sum_probs=53.7
Q ss_pred CCCeEEEEecch-hHHHHHHHhc-CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKH-KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~-~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
...+||+.|+|. |..+.++++. .+...+.+++.+++-.++++++-. . .. +.....+..+.+......+|+|
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga-~-~~-----i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA-D-WV-----INNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC-c-EE-----ecCccccHHHHHhcCCCCCCEE
Confidence 456899999542 2233444553 476678899999999898887532 1 00 1111123333443222234555
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+ |... ++ ..++. +.+.|+++|.++.-
T Consensus 233 i-d~~g----~~-------~~~~~-~~~~l~~~G~~v~~ 258 (339)
T PRK10083 233 I-DAAC----HP-------SILEE-AVTLASPAARIVLM 258 (339)
T ss_pred E-ECCC----CH-------HHHHH-HHHHhhcCCEEEEE
Confidence 4 4331 11 23455 46789999998754
No 443
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=79.80 E-value=5.8 Score=36.89 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=62.3
Q ss_pred CCCCeEEEEecchhHHHHH---HHhcC--CCCEEEEEEcCH--------------------------HHHHHHHHhhhhh
Q 019550 104 QNPKTVFIMGGGEGSAARE---ALKHK--SLEKVVMCDIDQ--------------------------EVVDFCRRFLTVN 152 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~---l~~~~--~~~~v~~VEid~--------------------------~vi~~ar~~f~~~ 152 (339)
.-|..++++|+--|+++.. +++.. +..++.+.|-=. ...+..+++|...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4588999999988876543 33322 345677766311 1234445554322
Q ss_pred ccccCCCCeEEEEccHHHHHHhc-CCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 153 QEAFCSKKLNLVVNDAKAELEKR-NEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 153 ~~~~~~~rv~v~~~D~~~~l~~~-~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
.+.+++++++.|+..+-|... .+++-++-+|.--- .| |.+.++. +..+|.|||++++.-
T Consensus 153 --gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY---es-----T~~aLe~-lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 --GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY---ES-----TKDALEF-LYPRLSPGGIIIFDD 212 (248)
T ss_dssp --TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH---HH-----HHHHHHH-HGGGEEEEEEEEESS
T ss_pred --CCCcccEEEECCcchhhhccCCCccEEEEEEeccch---HH-----HHHHHHH-HHhhcCCCeEEEEeC
Confidence 123679999999998887654 36777877775311 12 6788888 799999999999863
No 444
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.70 E-value=11 Score=39.00 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=56.9
Q ss_pred CCCeEEEEecchhHHHHHHHhc---CCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh----cCC
Q 019550 105 NPKTVFIMGGGEGSAAREALKH---KSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK----RNE 177 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~----~~~ 177 (339)
..|+||+-|+ +|+++.++.+. ...+++...|.|+.-+..-++.+.... ...+++.+.+|.++.-+- ..-
T Consensus 249 ~gK~vLVTGa-gGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~---~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 249 TGKTVLVTGG-GGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF---PELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC---CCcceEEEecccccHHHHHHHHhcC
Confidence 3577888775 57777666652 345889999999998887777665321 257899999999876322 134
Q ss_pred ceeEEEecCC
Q 019550 178 KFDVIFGDLA 187 (339)
Q Consensus 178 ~yDvIi~D~~ 187 (339)
+.|+|+..+.
T Consensus 325 kvd~VfHAAA 334 (588)
T COG1086 325 KVDIVFHAAA 334 (588)
T ss_pred CCceEEEhhh
Confidence 6999999886
No 445
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=79.56 E-value=6.2 Score=42.46 Aligned_cols=102 Identities=14% Similarity=0.180 Sum_probs=65.0
Q ss_pred CeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhc------cccC-------CCCeEEEEccHHHH
Q 019550 107 KTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQ------EAFC-------SKKLNLVVNDAKAE 171 (339)
Q Consensus 107 ~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~------~~~~-------~~rv~v~~~D~~~~ 171 (339)
++|-+||+|. ++++..++. . ..+|+.+|.+++.++.++++....- ..+. -.+++.. .|. +-
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~-~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD-K-GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-SG 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh-C-CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-HH
Confidence 6799999994 444444554 3 4689999999999998777653210 0000 0233322 221 11
Q ss_pred HHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 172 LEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+ ...|+||=..+... -..++.|+. +.+.++|+.+|+.|+.+
T Consensus 412 ~----~~aDlViEAv~E~l-------~~K~~vf~~-l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 F----KNADMVIEAVFEDL-------SLKHKVIKE-VEAVVPPHCIIASNTSA 452 (737)
T ss_pred h----ccCCeehhhccccH-------HHHHHHHHH-HHhhCCCCcEEEEcCCC
Confidence 1 45788887766432 125688999 79999999999988753
No 446
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=79.43 E-value=6 Score=44.07 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=30.7
Q ss_pred ChhhHHHHHhhhhcc--cCCCCCeEEEEecchhHHHHHHHh---cCCCCEEEEEEcCH
Q 019550 87 DEFIYHECLIHPPLL--CHQNPKTVFIMGGGEGSAAREALK---HKSLEKVVMCDIDQ 139 (339)
Q Consensus 87 d~~~Y~e~l~~~~l~--~~~~p~~VL~IG~G~G~~~~~l~~---~~~~~~v~~VEid~ 139 (339)
|+..|.|.+.-+..- ..-...+||++|+|+ ++.++++ ..|+.+++.+|-|.
T Consensus 3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gG--LG~EiaKnL~laGVg~iti~D~d~ 58 (1008)
T TIGR01408 3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGG--LGLEIAKNLVLAGVKSVTLHDTEK 58 (1008)
T ss_pred hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCH--HHHHHHHHHHHcCCCeEEEEeCCe
Confidence 445676654422211 111356899999974 3334443 36889999999774
No 447
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.35 E-value=21 Score=33.50 Aligned_cols=94 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 104 QNPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 104 ~~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
....+||++|+| -|..+..+++..+ .+|+++..+++..+.+++. ... .++..+-........+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G-~~v~~~~~~~~~~~~~~~~-g~~---------~~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMG-FETVAITRSPDKRELARKL-GAD---------EVVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHh-CCc---------EEeccCCcchHHhccCCCCEE
Confidence 345789999876 5556666667665 5799999999888887653 211 111111011111123468988
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+.-...+ ...+. +.+.|+++|.++.-
T Consensus 230 i~~~~~~------------~~~~~-~~~~l~~~G~~i~~ 255 (330)
T cd08245 230 LVTVVSG------------AAAEA-ALGGLRRGGRIVLV 255 (330)
T ss_pred EECCCcH------------HHHHH-HHHhcccCCEEEEE
Confidence 7432211 23455 56789999988754
No 448
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.19 E-value=8.9 Score=40.23 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred CeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcC-CceeE
Q 019550 107 KTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRN-EKFDV 181 (339)
Q Consensus 107 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~-~~yDv 181 (339)
.+|+++|+|-=+ +++.+.+ . ..+++++|.||+.++.++++ ..+++.+|+.+- |++.. ++.|+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~-~-g~~vvvID~d~~~v~~~~~~-----------g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA-N-KMRITVLERDISAVNLMRKY-----------GYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh-C-CCCEEEEECCHHHHHHHHhC-----------CCeEEEeeCCCHHHHHhcCCccCCE
Confidence 579999987433 2333333 3 35799999999999988763 256888998653 44433 67999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|++-..|+.. +...-+. .+.+.|+..++...
T Consensus 468 vv~~~~d~~~--------n~~i~~~--~r~~~p~~~IiaRa 498 (601)
T PRK03659 468 IVITCNEPED--------TMKIVEL--CQQHFPHLHILARA 498 (601)
T ss_pred EEEEeCCHHH--------HHHHHHH--HHHHCCCCeEEEEe
Confidence 8888776531 1122232 35678888777664
No 449
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=79.10 E-value=26 Score=34.96 Aligned_cols=112 Identities=23% Similarity=0.198 Sum_probs=63.5
Q ss_pred CeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhh---hc------cccCCCCeEEEEccHHHHHHhcCC
Q 019550 107 KTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTV---NQ------EAFCSKKLNLVVNDAKAELEKRNE 177 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~---~~------~~~~~~rv~v~~~D~~~~l~~~~~ 177 (339)
.+|-++|.|==+++..+.-.....+|+++|||+..++...+--.. .. .+.+..+++.- .|.. . -.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraT-td~~-~----l~ 83 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRAT-TDPE-E----LK 83 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEe-cChh-h----cc
Confidence 679999999666655444323346899999999999865432100 00 00111122211 1110 0 13
Q ss_pred ceeEEEecCCCCCCC-CccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 178 KFDVIFGDLADPVEG-GPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~-~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
..|++|+-.+.|... ..+.--|-...-+. +...|++|-++++.+..|
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~s-Ia~~L~kG~LVIlEST~~ 131 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARS-IAPVLKKGDLVILESTTP 131 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHH-HHHhcCCCCEEEEecCCC
Confidence 689988888766532 11112223344555 578999999999887544
No 450
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.10 E-value=39 Score=32.51 Aligned_cols=113 Identities=13% Similarity=0.142 Sum_probs=67.7
Q ss_pred eEEEEEeCCceEEE-EEcCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhHHH--HHHHhcCCCCEEEEEEcC
Q 019550 62 DIALLDTKRFGKVL-VIDGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGSAA--REALKHKSLEKVVMCDID 138 (339)
Q Consensus 62 ~I~V~e~~~~g~~L-~ldG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~~~--~~l~~~~~~~~v~~VEid 138 (339)
.|.+++... |+.+ .+||...+..+.... -.++ .-.+..++++++.+||+|.=+-. +.++..++..+|.+.+.+
T Consensus 87 ~i~L~d~~t-G~p~ai~d~~~lT~~RTaA~--sala-a~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~ 162 (325)
T TIGR02371 87 LIILVSPET-GFPIALMDGTYITDMRTGAA--GGVA-AKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT 162 (325)
T ss_pred EEEEeeCCC-CCeEEEEeCcchhhHHHHHH--HHHH-HHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 355666554 5543 678877766654211 1121 12344567899999999854433 444455677899999999
Q ss_pred HHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCC
Q 019550 139 QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 139 ~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d 188 (339)
++-.+...+.+... ..++.. ..|..+-+ +.-|+|++-.+.
T Consensus 163 ~~~~~~~~~~~~~~-----g~~v~~-~~~~~eav----~~aDiVitaT~s 202 (325)
T TIGR02371 163 PSTREKFALRASDY-----EVPVRA-ATDPREAV----EGCDILVTTTPS 202 (325)
T ss_pred HHHHHHHHHHHHhh-----CCcEEE-eCCHHHHh----ccCCEEEEecCC
Confidence 88876554444321 123333 45655555 357999986653
No 451
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.94 E-value=8.4 Score=36.71 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 108 TVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 108 ~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
+||++|+|+ |+-....+...+..+++.||.|-
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDT 33 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 589999873 33222233347889999999874
No 452
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.84 E-value=8.6 Score=41.18 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=66.1
Q ss_pred CCeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh------ccccC-------CCCeEEEEccHHH
Q 019550 106 PKTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN------QEAFC-------SKKLNLVVNDAKA 170 (339)
Q Consensus 106 p~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~------~~~~~-------~~rv~v~~~D~~~ 170 (339)
-++|.+||+|. .+++..+++.. ...|+.+|.+++.++.+++++... ...+. -.++++. .|. +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H
Confidence 36899999996 44444444233 468999999999998887665321 00000 0234333 221 2
Q ss_pred HHHhcCCceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 171 ELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 171 ~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
-+ +..|+||=..+... -..+++|+. +.+.++|+.+|+.|+.+
T Consensus 386 ~~----~~aDlViEav~E~~-------~~K~~v~~~-le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 386 GF----KHADVVIEAVFEDL-------ALKQQMVAE-VEQNCAPHTIFASNTSS 427 (708)
T ss_pred Hh----ccCCEEeecccccH-------HHHHHHHHH-HHhhCCCCcEEEECCCC
Confidence 12 45788887776432 125688999 79999999999988653
No 453
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=78.69 E-value=38 Score=31.36 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred HHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCCCCCCCCccccCC
Q 019550 120 AREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLY 199 (339)
Q Consensus 120 ~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~ 199 (339)
++.+.+..+..+|+++|.++..++.|++.- .. .-...+ .+.+ +.+|+||+..+-. .
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g-~~---------~~~~~~-~~~~----~~~DlvvlavP~~---------~ 57 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG-II---------DEASTD-IEAV----EDADLVVLAVPVS---------A 57 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT-SS---------SEEESH-HHHG----GCCSEEEE-S-HH---------H
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC-Ce---------eeccCC-HhHh----cCCCEEEEcCCHH---------H
Confidence 566666555689999999999999887652 11 111222 2222 4579999987621 2
Q ss_pred cHHHHHHHHccccCCCcEEEEecCCCCccCchhhHHHHHHHHHhHCC-ceEEEEEeecccCC--------------ceeE
Q 019550 200 TKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFK-HVVAYTAHVPSFAD--------------TWGW 264 (339)
Q Consensus 200 t~ef~~~~~~~~L~~gGilv~~~~~~~~~~~~~~~~~i~~~l~~~F~-~v~~~~~~iP~~~~--------------~~~~ 264 (339)
..++++. +...|++|++++ -.+|. -..+.+.+++..+ .+..... =|.+|. +-.+
T Consensus 58 ~~~~l~~-~~~~~~~~~iv~-Dv~Sv--------K~~~~~~~~~~~~~~~~~v~~-HPM~G~e~~G~~~a~~~lf~g~~~ 126 (258)
T PF02153_consen 58 IEDVLEE-IAPYLKPGAIVT-DVGSV--------KAPIVEAMERLLPEGVRFVGG-HPMAGPEKSGPEAADADLFEGRNW 126 (258)
T ss_dssp HHHHHHH-HHCGS-TTSEEE-E--S---------CHHHHHHHHHHHTSSGEEEEE-EESCSTSSSSGGG-TTTTTTTSEE
T ss_pred HHHHHHH-hhhhcCCCcEEE-EeCCC--------CHHHHHHHHHhcCcccceeec-CCCCCCccccchhhcccccCCCeE
Confidence 5688888 788888876664 44432 1234555555555 3332222 133332 2345
Q ss_pred EEEecCCCC-CCHHHHHHHHHhcCcccccccCHHhhHHhc
Q 019550 265 VMASDQPFS-INAEEIDNRIKSRINAELLYLNGASFLSST 303 (339)
Q Consensus 265 ~~as~~p~~-~~~~~l~~r~~~~~~~~~~yy~~~~h~~~f 303 (339)
+++-..-.. -..+.+.+-+... ....-+.+++-|-..+
T Consensus 127 il~p~~~~~~~~~~~~~~l~~~~-Ga~~~~~~~eeHD~~~ 165 (258)
T PF02153_consen 127 ILCPGEDTDPEALELVEELWEAL-GARVVEMDAEEHDRIM 165 (258)
T ss_dssp EEEECTTS-HHHHHHHHHHHHHC-T-EEEE--HHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHHHHC-CCEEEEcCHHHHHHHH
Confidence 666332111 1112233323322 2356678999996555
No 454
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=78.48 E-value=14 Score=33.48 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=39.4
Q ss_pred cccCCCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhh
Q 019550 100 LLCHQNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLT 150 (339)
Q Consensus 100 l~~~~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~ 150 (339)
.+.+..|-+.|+.|.|-.++.-..+.|. .+.+.+|=|+.-+..+++..+
T Consensus 34 VL~~raPCN~LVFGLghdsllW~aLN~g--GrTvFLEEd~~~i~~~~~~~p 82 (225)
T TIGR01627 34 VLTRRSPCNILVFGLAHQYLMWSSLNHR--GRTVFIEEEKIMIAKAEVNPP 82 (225)
T ss_pred HHHhcCCceEEEeccCcchHHHHHhcCC--CeeEEecCCHHHHHHHhhcCC
Confidence 3445678899999999999988777753 467899999999998887654
No 455
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=78.42 E-value=10 Score=33.62 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=44.5
Q ss_pred eEEEEecchhHHHHHHHh------cCCCCEEEEEEcCHHHHHHHHHh----hhhhccccCCCCeEE-EEccHHHHHHhcC
Q 019550 108 TVFIMGGGEGSAAREALK------HKSLEKVVMCDIDQEVVDFCRRF----LTVNQEAFCSKKLNL-VVNDAKAELEKRN 176 (339)
Q Consensus 108 ~VL~IG~G~G~~~~~l~~------~~~~~~v~~VEid~~vi~~ar~~----f~~~~~~~~~~rv~v-~~~D~~~~l~~~~ 176 (339)
++.+||+|+-.++..+.. ..+..++..+|+|++=++...+. +... ...+++ ...|-++-|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-----~~~~~v~~ttd~~eAl~--- 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-----GADLKVEATTDRREALE--- 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-----TTSSEEEEESSHHHHHT---
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-----CCCeEEEEeCCHHHHhC---
Confidence 578999998877755542 23456899999999777654444 4333 344554 4567676664
Q ss_pred CceeEEEecC
Q 019550 177 EKFDVIFGDL 186 (339)
Q Consensus 177 ~~yDvIi~D~ 186 (339)
..|.||.-.
T Consensus 73 -gADfVi~~i 81 (183)
T PF02056_consen 73 -GADFVINQI 81 (183)
T ss_dssp -TESEEEE--
T ss_pred -CCCEEEEEe
Confidence 379988865
No 456
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=78.32 E-value=26 Score=35.04 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=54.5
Q ss_pred CCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHH-HHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 105 NPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVD-FCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 105 ~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~-~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
..++|+++|+|.=+ .....+...+..+|++++.+++-.+ +++++ +. . .+-..|..+.+ ..+|+|
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~-g~--------~-~i~~~~l~~~l----~~aDvV 244 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL-GG--------E-AVKFEDLEEYL----AEADIV 244 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-CC--------e-EeeHHHHHHHH----hhCCEE
Confidence 45789999987432 2222333356688999999976543 44432 11 0 11112333333 358999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCCC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPA 225 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~~ 225 (339)
|.-...+. .+.+.+.++. +.. -++++.+++....|
T Consensus 245 i~aT~s~~------~ii~~e~l~~-~~~-~~~~~~~viDla~P 279 (417)
T TIGR01035 245 ISSTGAPH------PIVSKEDVER-ALR-ERTRPLFIIDIAVP 279 (417)
T ss_pred EECCCCCC------ceEcHHHHHH-HHh-cCCCCeEEEEeCCC
Confidence 99765432 3456777765 321 12345677665544
No 457
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=78.22 E-value=20 Score=34.63 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc--cHHHHHHh-cCCcee
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN--DAKAELEK-RNEKFD 180 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~--D~~~~l~~-~~~~yD 180 (339)
..++||++|+|. |..+..+++..+...|++++.+++-.+.++++ ... .-+..... +..+.+.. ..+.+|
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL-GAT------ECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CCC------eecccccccchHHHHHHHHhCCCCc
Confidence 457899987642 33445566777766788999888888888654 221 11111122 33333332 235699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccC-CCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLN-DNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~-~gGilv~~ 221 (339)
+|+ |.... ...+.. +.+.|+ ++|.++.-
T Consensus 256 ~vi-d~~g~-----------~~~~~~-~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAF-EVIGS-----------ADTLKQ-ALDATRLGGGTSVVV 284 (365)
T ss_pred EEE-ECCCC-----------HHHHHH-HHHHhccCCCEEEEE
Confidence 888 43310 133444 456788 99998754
No 458
>PRK06949 short chain dehydrogenase; Provisional
Probab=78.20 E-value=17 Score=32.78 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=46.0
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHH------HHH---
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK--SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA------ELE--- 173 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~------~l~--- 173 (339)
..++||+.|+ +|.+++.+++.. ...+|+++..+++-++.....+... ..+++++..|..+ .+.
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-----GGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578888885 445554444321 2357999999987766554443221 2457777777532 121
Q ss_pred hcCCceeEEEecCC
Q 019550 174 KRNEKFDVIFGDLA 187 (339)
Q Consensus 174 ~~~~~yDvIi~D~~ 187 (339)
...++.|+||....
T Consensus 82 ~~~~~~d~li~~ag 95 (258)
T PRK06949 82 TEAGTIDILVNNSG 95 (258)
T ss_pred HhcCCCCEEEECCC
Confidence 11246899999875
No 459
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.10 E-value=29 Score=33.26 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred eEEEEecch-hHHHHHHHhcCCC-CEEEEEEcCHHHHHHHHHhhhhhccccCC-CCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 108 TVFIMGGGE-GSAAREALKHKSL-EKVVMCDIDQEVVDFCRRFLTVNQEAFCS-KKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 108 ~VL~IG~G~-G~~~~~l~~~~~~-~~v~~VEid~~vi~~ar~~f~~~~~~~~~-~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+|-+||+|. |.....++...+. .++..+|++++..+.-..-+... .++.. .++++..+|- +-+ +.-|+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~y-~~~----~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGDY-DDC----ADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECCH-HHh----CCCCEEEE
Confidence 478999986 5555444433343 57999999866543222212211 11222 3577777772 222 45799999
Q ss_pred cCCCCC
Q 019550 185 DLADPV 190 (339)
Q Consensus 185 D~~d~~ 190 (339)
-+-.|.
T Consensus 75 taG~~~ 80 (307)
T cd05290 75 TAGPSI 80 (307)
T ss_pred CCCCCC
Confidence 876554
No 460
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.03 E-value=53 Score=31.47 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=54.2
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDv 181 (339)
+..+|.+||+|. |......+...+ ..++..+|++++..+-...-+.... .+... .++.. +|..+ + +..|+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~----~~adi 74 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-T----ANSKV 74 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-h----CCCCE
Confidence 345899999973 333333333333 3579999998765433222222111 11122 25564 66433 3 45799
Q ss_pred EEecCCCCCCCCcc-ccCCc------HHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPC-YQLYT------KSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~-~~L~t------~ef~~~~~~~~L~~gGilv~~ 221 (339)
|++.+-.+...+.. ..|+. +++-+. +++ -+|+|++++-
T Consensus 75 vvitaG~~~k~g~~R~dll~~N~~i~~~~~~~-i~~-~~p~~~vivv 119 (312)
T cd05293 75 VIVTAGARQNEGESRLDLVQRNVDIFKGIIPK-LVK-YSPNAILLVV 119 (312)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHH-hCCCcEEEEc
Confidence 99966544321111 01111 233344 333 4889987653
No 461
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=78.00 E-value=1.4 Score=41.69 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=66.9
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+...-++++|||.|-... . .|...+.+.|+....+..|++- ...++...|+..- ......||.++
T Consensus 44 ~~gsv~~d~gCGngky~~---~-~p~~~~ig~D~c~~l~~~ak~~----------~~~~~~~ad~l~~-p~~~~s~d~~l 108 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---V-NPLCLIIGCDLCTGLLGGAKRS----------GGDNVCRADALKL-PFREESFDAAL 108 (293)
T ss_pred CCcceeeecccCCcccCc---C-CCcceeeecchhhhhccccccC----------CCceeehhhhhcC-CCCCCccccch
Confidence 345679999999997654 2 3557799999999998888763 1126677787542 33457899988
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+-+.-.. .+...-....++. +.+.|+|||-..+.
T Consensus 109 siavihh---lsT~~RR~~~l~e-~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHH---LSTRERRERALEE-LLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhh---hhhHHHHHHHHHH-HHHHhcCCCceEEE
Confidence 8776322 1112223467888 78999999965554
No 462
>PRK06545 prephenate dehydrogenase; Validated
Probab=77.71 E-value=72 Score=31.03 Aligned_cols=92 Identities=22% Similarity=0.304 Sum_probs=51.2
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
++|.+||+| +|.+++.+.+. + ..+.+++.|+...+.++.. .. .-+.-...|..+ .-+..|+||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-~~v~i~~~~~~~~~~~~a~-~~-------~~~~~~~~~~~~----~~~~aDlVil 66 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-PDVFIIGYDPSAAQLARAL-GF-------GVIDELAADLQR----AAAEADLIVL 66 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-CCeEEEEeCCCHHHHHHHh-cC-------CCCcccccCHHH----HhcCCCEEEE
Confidence 468999998 56666666553 3 3566777777655544321 10 000001122222 2256899999
Q ss_pred cCCCCCCCCccccCCcHHHHHHHHcc-ccCCCcEEEEecC
Q 019550 185 DLADPVEGGPCYQLYTKSFYERILKP-KLNDNGIFVTQAG 223 (339)
Q Consensus 185 D~~d~~~~~p~~~L~t~ef~~~~~~~-~L~~gGilv~~~~ 223 (339)
-.+.. ...++++. +.. .++++ .+++..+
T Consensus 67 avP~~---------~~~~vl~~-l~~~~l~~~-~ivtDv~ 95 (359)
T PRK06545 67 AVPVD---------ATAALLAE-LADLELKPG-VIVTDVG 95 (359)
T ss_pred eCCHH---------HHHHHHHH-HhhcCCCCC-cEEEeCc
Confidence 98732 14577787 665 47776 4444544
No 463
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=77.69 E-value=25 Score=32.00 Aligned_cols=76 Identities=24% Similarity=0.318 Sum_probs=52.2
Q ss_pred EEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-----ccHHHHHHhcCCceeEEEecCCCCCCCCccccCCcHHHHH
Q 019550 131 KVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-----NDAKAELEKRNEKFDVIFGDLADPVEGGPCYQLYTKSFYE 205 (339)
Q Consensus 131 ~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-----~D~~~~l~~~~~~yDvIi~D~~d~~~~~p~~~L~t~ef~~ 205 (339)
+|-.||=||.|.++-++|.... |.++++- +.++..++.. +-|+|++|.+-|...|. +++.
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~------~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi-------~lL~ 66 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI------PGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGI-------ELLP 66 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC------CCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCccH-------HHHH
Confidence 5778999999999999998754 4555443 3444555433 34999999986653232 7888
Q ss_pred HHHccccCCCcEEEEec
Q 019550 206 RILKPKLNDNGIFVTQA 222 (339)
Q Consensus 206 ~~~~~~L~~gGilv~~~ 222 (339)
. ++..=-+..++++.+
T Consensus 67 ~-ir~~~~~~DVI~iTA 82 (224)
T COG4565 67 E-LRSQHYPVDVIVITA 82 (224)
T ss_pred H-HHhcCCCCCEEEEec
Confidence 8 565656667777754
No 464
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.68 E-value=30 Score=32.95 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=57.1
Q ss_pred eEEEEecchhHH--HHHHHhcCCCCEEEEEEcCHHHHHHHHHh---hhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 108 TVFIMGGGEGSA--AREALKHKSLEKVVMCDIDQEVVDFCRRF---LTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 108 ~VL~IG~G~G~~--~~~l~~~~~~~~v~~VEid~~vi~~ar~~---f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
+|.+||+|.=+. +..+.+ . ..+|+.++.+++.++..++. ........-.+++++. .|..+.+ .+..|+|
T Consensus 2 kI~IiGaGa~G~ala~~L~~-~-g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~---~~~~Dli 75 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-K-KISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL---SDNATCI 75 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-C-CCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH---hCCCCEE
Confidence 589999985443 333333 3 36799999999887766653 1111000001234433 4433322 2468999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHcc-ccCCCc-EEEEecC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKP-KLNDNG-IFVTQAG 223 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~-~L~~gG-ilv~~~~ 223 (339)
|+-.++. ...+.++. ++. .++++. +++++-|
T Consensus 76 iiavks~---------~~~~~l~~-l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 76 ILAVPTQ---------QLRTICQQ-LQDCHLKKNTPILICSKG 108 (326)
T ss_pred EEEeCHH---------HHHHHHHH-HHHhcCCCCCEEEEEEcC
Confidence 9987643 24577887 676 788776 4444433
No 465
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=77.45 E-value=43 Score=31.61 Aligned_cols=98 Identities=21% Similarity=0.254 Sum_probs=56.4
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc-CCceeE
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR-NEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~-~~~yDv 181 (339)
.+..+||+.|+|+ |..+..+++..+...++++.-+++..+..+++ ... .-+........+..+.. .+.+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~------~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD------DTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC------EEecCccccHHHHHHHhCCCCCCE
Confidence 3456899998655 55666677777655588888888777776543 211 00111111112222222 245999
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+.-... ...+.. +.+.|+++|.++.-
T Consensus 231 vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAGS------------PATIEQ-ALALARPGGKVVLV 257 (343)
T ss_pred EEECCCC------------HHHHHH-HHHHhhcCCEEEEE
Confidence 9854221 134455 56789999998754
No 466
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=77.38 E-value=3.7 Score=36.90 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=57.7
Q ss_pred CCCCeEEEEecchhHHHHHHHhcCC-CCEEEEEEcCHHHHHHHHHhhhhhcccc---CCCCeEEEEccHHHHHHhcCCce
Q 019550 104 QNPKTVFIMGGGEGSAAREALKHKS-LEKVVMCDIDQEVVDFCRRFLTVNQEAF---CSKKLNLVVNDAKAELEKRNEKF 179 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~~~-~~~v~~VEid~~vi~~ar~~f~~~~~~~---~~~rv~v~~~D~~~~l~~~~~~y 179 (339)
.....|.++=-|+|...+-+..+-+ ...|+.+--+ +....+..+-+..+.+. ...+++++-.+..... ....-
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~-e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPA-ELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecch-hhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 4567899999999999987766533 2355544332 22222222111000000 0123333333332222 23556
Q ss_pred eEEEecCCCCCCC-CccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 180 DVIFGDLADPVEG-GPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 180 DvIi~D~~d~~~~-~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|++.....+.... -....-+...+++. +.+.|||||++++.
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~-vf~~LKPGGv~~V~ 165 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAA-VFKALKPGGVYLVE 165 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHH-HHHhcCCCcEEEEE
Confidence 6666544432100 00011234678888 79999999999875
No 467
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.27 E-value=25 Score=33.22 Aligned_cols=78 Identities=23% Similarity=0.232 Sum_probs=42.6
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE-ccHHHHHHhcCCceeEEEe
Q 019550 107 KTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV-NDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 107 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~-~D~~~~l~~~~~~yDvIi~ 184 (339)
.+|-+||+|. |......+...+..+|..+|++++..+....-+... ........++.. +|- +-+ ..-|+||+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~d~-~~~----~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEA-APVEGFDTKITGTNDY-EDI----AGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhh-hhhcCCCcEEEeCCCH-HHH----CCCCEEEE
Confidence 4899999997 665555554343228999999988654221111111 011112234443 452 222 35699998
Q ss_pred cCCCCC
Q 019550 185 DLADPV 190 (339)
Q Consensus 185 D~~d~~ 190 (339)
....|.
T Consensus 77 ~~~~p~ 82 (307)
T PRK06223 77 TAGVPR 82 (307)
T ss_pred CCCCCC
Confidence 765443
No 468
>PLN02702 L-idonate 5-dehydrogenase
Probab=76.68 E-value=14 Score=35.58 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEE--EEccHHHHHHh----cCC
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNL--VVNDAKAELEK----RNE 177 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v--~~~D~~~~l~~----~~~ 177 (339)
..++||++|+| -|..+..+++..+...+.+++.++.-.+.++++ .... .+.+ ...+..+.+.. ..+
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GADE------IVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE------EEecCcccccHHHHHHHHhhhcCC
Confidence 45689999764 244556667767767789999998888888875 2110 0110 11233333321 235
Q ss_pred ceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 178 KFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 178 ~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.+|+|+--...+ ..+.. +.+.|+++|.++.-
T Consensus 254 ~~d~vid~~g~~------------~~~~~-~~~~l~~~G~~v~~ 284 (364)
T PLN02702 254 GIDVSFDCVGFN------------KTMST-ALEATRAGGKVCLV 284 (364)
T ss_pred CCCEEEECCCCH------------HHHHH-HHHHHhcCCEEEEE
Confidence 689887643311 23455 56789999998754
No 469
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=76.63 E-value=19 Score=33.66 Aligned_cols=91 Identities=11% Similarity=0.100 Sum_probs=52.4
Q ss_pred eEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEE---EEccHHHHHHhcCCceeEE
Q 019550 108 TVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNL---VVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 108 ~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v---~~~D~~~~l~~~~~~yDvI 182 (339)
+|++||+|.-+ ++..+.+ . ..+|+.++.+++.++..++. ...- ++..... ...|. ... +.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~-g~~V~~~~r~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~----~~~-~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ-A-GHDVTLVARRGAHLDALNEN-GLRL---EDGEITVPVLAADDP----AEL-GPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh-C-CCeEEEEECChHHHHHHHHc-CCcc---cCCceeecccCCCCh----hHc-CCCCEE
Confidence 68999998533 3333333 3 35899999988777665543 1110 0111111 11221 112 679999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
++-.... ...+.++. ++..+.++..++
T Consensus 71 ila~k~~---------~~~~~~~~-l~~~l~~~~~iv 97 (304)
T PRK06522 71 ILAVKAY---------QLPAALPS-LAPLLGPDTPVL 97 (304)
T ss_pred EEecccc---------cHHHHHHH-HhhhcCCCCEEE
Confidence 9987632 14577887 678888876554
No 470
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=76.49 E-value=27 Score=34.37 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEE---ccHHHHHHh-c-CCc
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVV---NDAKAELEK-R-NEK 178 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~---~D~~~~l~~-~-~~~ 178 (339)
..++||+.|+|. |..+..+++..+...|.++|.+++-.++++++ +.. .+.. .+..+.+.. . ...
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga~---------~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GCE---------TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CCe---------EEecCCcccHHHHHHHHcCCCC
Confidence 457888876653 33445667777776677889999888888875 211 1111 133333332 2 246
Q ss_pred eeEEEecCCCCCCCCcc--ccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 179 FDVIFGDLADPVEGGPC--YQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~--~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+|+--...+....+. ..--....++. +-+.++++|.+++-
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNS-LMEVTRVGGAIGIP 298 (393)
T ss_pred CcEEEECCCCccccccccccccchHHHHHH-HHHHhhCCCEEEEe
Confidence 89887644322100000 00001124565 56799999998864
No 471
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.42 E-value=13 Score=38.56 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=57.5
Q ss_pred CeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcC-CceeE
Q 019550 107 KTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRN-EKFDV 181 (339)
Q Consensus 107 ~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~-~~yDv 181 (339)
.+++++|+|.=+ +++.+.+ . ..+++++|.|++.++.+++. ..+++.+|+.+. +++.+ ++.|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~-~-g~~vvvId~d~~~~~~~~~~-----------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA-A-GIPLVVIETSRTRVDELRER-----------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH-C-CCCEEEEECCHHHHHHHHHC-----------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 579999987432 2333332 2 35799999999998888753 367888888753 44333 68998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
+++...|... ...... +.+.+.|+-.++...
T Consensus 485 viv~~~~~~~--------~~~iv~--~~~~~~~~~~iiar~ 515 (558)
T PRK10669 485 LLLTIPNGYE--------AGEIVA--SAREKRPDIEIIARA 515 (558)
T ss_pred EEEEcCChHH--------HHHHHH--HHHHHCCCCeEEEEE
Confidence 8877665420 011222 234556777666654
No 472
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.27 E-value=19 Score=33.94 Aligned_cols=97 Identities=24% Similarity=0.368 Sum_probs=59.3
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCcee
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yD 180 (339)
....+||+.|+|. |..+..+++..+ .+|+++..+++-.+.++++- . +.-+.....+..+.+... .+.+|
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g-~~v~~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARG-ARVIVVDIDDERLEFARELG-A------DDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEECCCHHHHHHHHHhC-C------CEEecCcccCHHHHHHHHhCCCCCC
Confidence 3466899998764 666677777665 67888888888888776542 1 111111222333334322 24599
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+..... .+.+.. +.+.|+++|.++.-
T Consensus 230 ~vld~~g~------------~~~~~~-~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDATGN------------PASMEE-AVELVAHGGRVVLV 257 (337)
T ss_pred EEEECCCC------------HHHHHH-HHHHHhcCCEEEEE
Confidence 99875421 134555 56789999988753
No 473
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.21 E-value=9.5 Score=37.33 Aligned_cols=72 Identities=21% Similarity=0.310 Sum_probs=41.1
Q ss_pred EEEEecc-hh-HHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCceeEEEe
Q 019550 109 VFIMGGG-EG-SAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEKFDVIFG 184 (339)
Q Consensus 109 VL~IG~G-~G-~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~yDvIi~ 184 (339)
||+||+| .| .+++.++++.+..+|++.+.+++-++...+.+ ...+++.+.-|..+. |...-+..|+||.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-------~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-------LGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-------cccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 7899985 12 23344445444448999999988776554432 146788888776543 3333356799998
Q ss_pred cCC
Q 019550 185 DLA 187 (339)
Q Consensus 185 D~~ 187 (339)
-++
T Consensus 74 ~~g 76 (386)
T PF03435_consen 74 CAG 76 (386)
T ss_dssp -SS
T ss_pred CCc
Confidence 775
No 474
>PRK08507 prephenate dehydrogenase; Validated
Probab=75.84 E-value=18 Score=33.69 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=53.0
Q ss_pred eEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEec
Q 019550 108 TVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGD 185 (339)
Q Consensus 108 ~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D 185 (339)
+|.+||+|. +.+++.+.+.....+|+++|.+++-.+.+++. +.. .. ..+..+ + .+ .|+||+-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~---------~~-~~~~~~-~---~~-aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLV---------DE-IVSFEE-L---KK-CDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCC---------cc-cCCHHH-H---hc-CCEEEEe
Confidence 688999984 55666665532124799999999887766542 110 00 112222 2 12 7999998
Q ss_pred CCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 186 LADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 186 ~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
.+... ..+.++. +.. ++++.++ +..++
T Consensus 66 vp~~~---------~~~~~~~-l~~-l~~~~iv-~d~gs 92 (275)
T PRK08507 66 IPVDA---------IIEILPK-LLD-IKENTTI-IDLGS 92 (275)
T ss_pred CcHHH---------HHHHHHH-Hhc-cCCCCEE-EECcc
Confidence 87432 3466677 566 8777655 45543
No 475
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=75.26 E-value=9.8 Score=36.53 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=65.2
Q ss_pred CCeEEEEecchhH--HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhh-ccccCCCCeEEEEccHHHHHHhcC------
Q 019550 106 PKTVFIMGGGEGS--AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVN-QEAFCSKKLNLVVNDAKAELEKRN------ 176 (339)
Q Consensus 106 p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~-~~~~~~~rv~v~~~D~~~~l~~~~------ 176 (339)
-++|-+||+|.=+ ++..++. ..-.|+..|++++.++.++...... ... .++-++-..+....+....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~~~~~~~~~~~i~~~l~k~--~~~g~l~~~~~~~~l~~i~~~~~~~ 78 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDISPEALERALAYIEKNLEKL--VEKGKLTEEEADAALARITPTTDLA 78 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh--cCCceEEEeCCHHHHHHHHHHHHHHHHHH--HhcCCCChhhHHHHHhhccccCchh
Confidence 4689999998433 3333333 4468999999999999888876432 100 1111222222222222211
Q ss_pred --CceeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEecCC
Q 019550 177 --EKFDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGP 224 (339)
Q Consensus 177 --~~yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~~~ 224 (339)
+..|+||=..+... -..++.|+. +.+.++|+-+|..|+.+
T Consensus 79 ~l~~~DlVIEAv~E~l-------evK~~vf~~-l~~~~~~~aIlASNTSs 120 (307)
T COG1250 79 ALKDADLVIEAVVEDL-------ELKKQVFAE-LEALAKPDAILASNTSS 120 (307)
T ss_pred HhccCCEEEEeccccH-------HHHHHHHHH-HHhhcCCCcEEeeccCC
Confidence 34688877766322 125688888 78999999999988753
No 476
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.12 E-value=14 Score=33.07 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=44.5
Q ss_pred CeEEEEecchhHHHHHHHhcC--CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH------HHhcCCc
Q 019550 107 KTVFIMGGGEGSAAREALKHK--SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE------LEKRNEK 178 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~------l~~~~~~ 178 (339)
++||+.|+. |+++..++++. ...+|++++.+++-.+...+.+... ...+++++..|..+. +....+.
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----GAVAVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----cCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 478999854 55554444321 2357999999876544333322211 135788888876543 2222346
Q ss_pred eeEEEecCC
Q 019550 179 FDVIFGDLA 187 (339)
Q Consensus 179 yDvIi~D~~ 187 (339)
+|+++....
T Consensus 77 ~d~vv~~ag 85 (243)
T PRK07102 77 PDIVLIAVG 85 (243)
T ss_pred CCEEEECCc
Confidence 799998764
No 477
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=74.97 E-value=3.6 Score=43.31 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCH
Q 019550 106 PKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQ 139 (339)
Q Consensus 106 p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~ 139 (339)
..+||++|+|+ |+.....+...++.+++.||-|-
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 56899999996 55444444447899999999663
No 478
>PLN02427 UDP-apiose/xylose synthase
Probab=74.83 E-value=9.2 Score=37.25 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=45.4
Q ss_pred CCCeEEEEecchhHHHHHHHhcC---CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK---SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~---~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~y 179 (339)
++++||+.| |+|.+++.+++.. +..+|.+++.++.-+. ........ ...++++++.+|..+. +...-..+
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~---~l~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~ 87 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIK---HLLEPDTV-PWSGRIQFHRINIKHDSRLEGLIKMA 87 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhh---hhhccccc-cCCCCeEEEEcCCCChHHHHHHhhcC
Confidence 467899988 4566666665532 2357999987654322 11111000 0135799999988653 33322458
Q ss_pred eEEEecCC
Q 019550 180 DVIFGDLA 187 (339)
Q Consensus 180 DvIi~D~~ 187 (339)
|+||.-+.
T Consensus 88 d~ViHlAa 95 (386)
T PLN02427 88 DLTINLAA 95 (386)
T ss_pred CEEEEccc
Confidence 99988764
No 479
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.78 E-value=19 Score=29.89 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=44.2
Q ss_pred CeEEEEecchhHHHHHHHhc---CCCCEEEEEEcC--HHHHHHHHHhhhhhccccCCCCeEEEEccHHH------H---H
Q 019550 107 KTVFIMGGGEGSAAREALKH---KSLEKVVMCDID--QEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKA------E---L 172 (339)
Q Consensus 107 ~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid--~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~------~---l 172 (339)
|.||+.|++ ++++++++++ .+..+|..+.-+ .+-.+.....++.. ..++.++..|..+ . +
T Consensus 1 k~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-----~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-----GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-----TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 457888866 5555554442 256688888888 33333333323321 3678888877432 2 2
Q ss_pred HhcCCceeEEEecCCC
Q 019550 173 EKRNEKFDVIFGDLAD 188 (339)
Q Consensus 173 ~~~~~~yDvIi~D~~d 188 (339)
.......|++|..+.-
T Consensus 75 ~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 75 IKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHSSESEEEEECSC
T ss_pred cccccccccccccccc
Confidence 2223679999988764
No 480
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=74.73 E-value=23 Score=29.41 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=42.8
Q ss_pred CCCCeEEEEecch--hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeE
Q 019550 104 QNPKTVFIMGGGE--GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDV 181 (339)
Q Consensus 104 ~~p~~VL~IG~G~--G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDv 181 (339)
.+.++|+++|+|. ...++.+++ .+..+|++++.+++-.+...+.+... .+.....|..+. -+..|+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----~~~~Dv 84 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAERFGEL-------GIAIAYLDLEEL----LAEADL 84 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHHHhhc-------ccceeecchhhc----cccCCE
Confidence 3568999999863 233333333 23468999999987665443332210 011222332221 356899
Q ss_pred EEecCCCCC
Q 019550 182 IFGDLADPV 190 (339)
Q Consensus 182 Ii~D~~d~~ 190 (339)
|++..+.+.
T Consensus 85 vi~~~~~~~ 93 (155)
T cd01065 85 IINTTPVGM 93 (155)
T ss_pred EEeCcCCCC
Confidence 999987643
No 481
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=74.58 E-value=6.9 Score=37.62 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCCEEEEEEcCHHHHHH-HHHhhhhhccccCCCCeEEEEccHHHH--HHhcCCce
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK--SLEKVVMCDIDQEVVDF-CRRFLTVNQEAFCSKKLNLVVNDAKAE--LEKRNEKF 179 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~-ar~~f~~~~~~~~~~rv~v~~~D~~~~--l~~~~~~y 179 (339)
..++||+.| |+|.++..+.++. ...+|++++....-... ......... .....+++++.+|..+. +...-+..
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVS-EEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccc-cccCCceEEEEccCCCHHHHHHHhhCC
Confidence 357899999 4566665555432 13579999875432111 111111100 00124688899998653 33323468
Q ss_pred eEEEecCC
Q 019550 180 DVIFGDLA 187 (339)
Q Consensus 180 DvIi~D~~ 187 (339)
|+||.-+.
T Consensus 92 d~ViHlAa 99 (348)
T PRK15181 92 DYVLHQAA 99 (348)
T ss_pred CEEEECcc
Confidence 99998875
No 482
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=74.52 E-value=2 Score=39.06 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCeEEEEecchhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHH-HH-hcCCceeEEE
Q 019550 106 PKTVFIMGGGEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAE-LE-KRNEKFDVIF 183 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~-l~-~~~~~yDvIi 183 (339)
+-++|+||+=+...+.. . .+.-.|+.+|+++.-- .|..+|..+. +. ...++||+|.
T Consensus 52 ~lrlLEVGals~~N~~s--~-~~~fdvt~IDLns~~~-------------------~I~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--T-SGWFDVTRIDLNSQHP-------------------GILQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccc--c-cCceeeEEeecCCCCC-------------------CceeeccccCCCCCCcccceeEEE
Confidence 46899999875544332 2 3445699999976322 2334443332 21 1247899999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcE-----EEEecCCCC
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGI-----FVTQAGPAG 226 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGi-----lv~~~~~~~ 226 (339)
+.+--.....|. -.-+..+. +.+.|+++|. |.+-...||
T Consensus 110 ~SLVLNfVP~p~---~RG~Ml~r-~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 110 LSLVLNFVPDPK---QRGEMLRR-AHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEeeCCCHH---HHHHHHHH-HHHHhCCCCccCcceEEEEeCchH
Confidence 887421100111 13367788 7899999999 766555555
No 483
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.50 E-value=50 Score=31.45 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=54.9
Q ss_pred eEEEEecch-hHHHHHHHhcCC-CCEEEEEEcCHHHHH-HHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEe
Q 019550 108 TVFIMGGGE-GSAAREALKHKS-LEKVVMCDIDQEVVD-FCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFG 184 (339)
Q Consensus 108 ~VL~IG~G~-G~~~~~l~~~~~-~~~v~~VEid~~vi~-~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~ 184 (339)
+|.+||+|. |......+...+ ..++..+|++++..+ .+...... . .+. +...+..+|- +-+ +..|+|++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-~-~~~-~~~~i~~~d~-~~l----~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-T-PFV-KPVRIYAGDY-ADC----KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-c-ccc-CCeEEeeCCH-HHh----CCCCEEEE
Confidence 689999985 343333333334 368999999987665 23222111 1 111 2345555653 222 45799999
Q ss_pred cCCCCCCCCccc-cCC--cHHHHHHHHc--cccCCCcEEEEe
Q 019550 185 DLADPVEGGPCY-QLY--TKSFYERILK--PKLNDNGIFVTQ 221 (339)
Q Consensus 185 D~~d~~~~~p~~-~L~--t~ef~~~~~~--~~L~~gGilv~~ 221 (339)
-+..+...+... .|. +...++.++. +...++|++++-
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 887654222110 000 2223333111 236688987754
No 484
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=74.50 E-value=16 Score=34.78 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=54.6
Q ss_pred CeEEEEecc--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHh--hhhhccccCCCCeE--EEEccHHHHHHhcCCcee
Q 019550 107 KTVFIMGGG--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRF--LTVNQEAFCSKKLN--LVVNDAKAELEKRNEKFD 180 (339)
Q Consensus 107 ~~VL~IG~G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~--f~~~~~~~~~~rv~--v~~~D~~~~l~~~~~~yD 180 (339)
.+|+++|+| +|.++..+.+ .+ ..|+.|.-.++-++..++. +..... ..... +...+. ...+.||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~-~G-~~V~lv~r~~~~~~~i~~~~Gl~i~~~---g~~~~~~~~~~~~-----~~~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR-AG-LPVRLILRDRQRLAAYQQAGGLTLVEQ---GQASLYAIPAETA-----DAAEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh-CC-CCeEEEEechHHHHHHhhcCCeEEeeC---CcceeeccCCCCc-----ccccccC
Confidence 379999988 3444554444 33 5799999987655655542 211110 11111 111111 1135799
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEE-EEecC
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIF-VTQAG 223 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGil-v~~~~ 223 (339)
+||+-.-. ..+.+.++. ++..+.++..+ .+|-|
T Consensus 73 ~viv~vK~---------~~~~~al~~-l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 73 RLLLACKA---------YDAEPAVAS-LAHRLAPGAELLLLQNG 106 (305)
T ss_pred EEEEECCH---------HhHHHHHHH-HHhhCCCCCEEEEEeCC
Confidence 99887542 125577888 78899998855 44533
No 485
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=74.24 E-value=13 Score=39.04 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=45.9
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHH---------HHHHHHHhhhhhccccCCCCeEEEEcc---HHHH
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQE---------VVDFCRRFLTVNQEAFCSKKLNLVVND---AKAE 171 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~---------vi~~ar~~f~~~~~~~~~~rv~v~~~D---~~~~ 171 (339)
+..+|++||.|+ |......+...+..++.+||-|.. .++.|+++ ++.+.+..-+ ..+.
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~---------n~~v~v~~i~~~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEET---------DDALLVQEIDFAEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHh---------CCCCceEeccCCcchhH
Confidence 356899999998 555555555578889999987754 33444441 3343332222 1222
Q ss_pred HHhcCCceeEEEecCCCCC
Q 019550 172 LEKRNEKFDVIFGDLADPV 190 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d~~ 190 (339)
...-+.||+|+.-.-++.
T Consensus 199 -~ev~~~~DiVi~vsDdy~ 216 (637)
T TIGR03693 199 -HEAFEPADWVLYVSDNGD 216 (637)
T ss_pred -HHhhcCCcEEEEECCCCC
Confidence 222367999998776553
No 486
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=74.21 E-value=36 Score=33.10 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=55.1
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEE---EccHHHHHHh-c-CCc
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLV---VNDAKAELEK-R-NEK 178 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~---~~D~~~~l~~-~-~~~ 178 (339)
...+||+.|+|. |..+.++++..+...|++++.+++-.++++++- .. .-+... ..+..+.+.. . .+.
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g-~~------~~v~~~~~~~~~~~~~v~~~~~g~g 275 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMG-AD------YVFNPTKMRDCLSGEKVMEVTKGWG 275 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CC------EEEcccccccccHHHHHHHhcCCCC
Confidence 456899987653 223345566676558999999888777777742 11 001111 0122222322 2 246
Q ss_pred eeEEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 179 FDVIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 179 yDvIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+|+ |.... ....+.. +.+.|+++|.++.-
T Consensus 276 vDvvl-d~~g~----------~~~~~~~-~~~~l~~~G~~v~~ 306 (384)
T cd08265 276 ADIQV-EAAGA----------PPATIPQ-MEKSIAINGKIVYI 306 (384)
T ss_pred CCEEE-ECCCC----------cHHHHHH-HHHHHHcCCEEEEE
Confidence 99887 44311 1133455 46788999998754
No 487
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=74.13 E-value=17 Score=32.60 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCCeEEEEecchhHHHHHHHhcC--CCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHH-----------HH
Q 019550 105 NPKTVFIMGGGEGSAAREALKHK--SLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAK-----------AE 171 (339)
Q Consensus 105 ~p~~VL~IG~G~G~~~~~l~~~~--~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~-----------~~ 171 (339)
+.++||+.|+. |.++..++++. ...+|.+++.+++-.+...+.+... ...+++++..|.. +.
T Consensus 11 ~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----GGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----CCCCceEEEecccCCCHHHHHHHHHH
Confidence 45789999864 44444444321 1358999999986655444433321 1245666665542 12
Q ss_pred HHhcCCceeEEEecCC
Q 019550 172 LEKRNEKFDVIFGDLA 187 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~ 187 (339)
+...-++.|+||..+.
T Consensus 86 ~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 86 IEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHhCCCCEEEECCc
Confidence 2222357899999875
No 488
>PRK08818 prephenate dehydrogenase; Provisional
Probab=73.89 E-value=7 Score=38.54 Aligned_cols=80 Identities=19% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCeEEEEec-c--hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEE
Q 019550 106 PKTVFIMGG-G--EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVI 182 (339)
Q Consensus 106 p~~VL~IG~-G--~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvI 182 (339)
..+|++||+ | +|.+++.+.+.. ..+|+++|.+. .. ..|..+.+ ...|+|
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d-------------------~~----~~~~~~~v----~~aDlV 55 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPAD-------------------PG----SLDPATLL----QRADVL 55 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCc-------------------cc----cCCHHHHh----cCCCEE
Confidence 358999999 7 666777666533 56799998740 00 01222222 458999
Q ss_pred EecCCCCCCCCccccCCcHHHHHHHHccc---cCCCcEEEEecCC
Q 019550 183 FGDLADPVEGGPCYQLYTKSFYERILKPK---LNDNGIFVTQAGP 224 (339)
Q Consensus 183 i~D~~d~~~~~p~~~L~t~ef~~~~~~~~---L~~gGilv~~~~~ 224 (339)
|+..|-. .+.++++. +... |+| |.+++-.+|
T Consensus 56 ilavPv~---------~~~~~l~~-l~~~~~~l~~-~~iVtDVgS 89 (370)
T PRK08818 56 IFSAPIR---------HTAALIEE-YVALAGGRAA-GQLWLDVTS 89 (370)
T ss_pred EEeCCHH---------HHHHHHHH-HhhhhcCCCC-CeEEEECCC
Confidence 9988722 24577777 5554 566 555567655
No 489
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.89 E-value=26 Score=33.08 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
..++||+.|+| -|..+.++++..+ .+|++++.+++-.+.++++ +.. .-+.....|..+.+... +.+|+|+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~-g~~------~~i~~~~~~~~~~~~~~-~~~d~vi 233 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMG-FRTVAISRGSDKADLARKL-GAH------HYIDTSKEDVAEALQEL-GGAKLIL 233 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHc-CCc------EEecCCCccHHHHHHhc-CCCCEEE
Confidence 45689999864 3444455666666 4799999998888888664 211 11111122333334433 3589988
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
.....+ ...+. +.+.|+++|.++.-
T Consensus 234 ~~~g~~------------~~~~~-~~~~l~~~G~~v~~ 258 (333)
T cd08296 234 ATAPNA------------KAISA-LVGGLAPRGKLLIL 258 (333)
T ss_pred ECCCch------------HHHHH-HHHHcccCCEEEEE
Confidence 422111 23445 45789999998854
No 490
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=73.83 E-value=21 Score=27.13 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=50.7
Q ss_pred eEEEEecchhH--HHHHHHhcC-CCCEEEEE-EcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEE
Q 019550 108 TVFIMGGGEGS--AAREALKHK-SLEKVVMC-DIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 108 ~VL~IG~G~G~--~~~~l~~~~-~~~~v~~V-Eid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi 183 (339)
+|.+||+|.-+ +++.++++. ...+|..+ +.+++-++..++.++ +.+...|..+.++ ..|+|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~advvi 66 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG----------VQATADDNEEAAQ----EADVVI 66 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT----------TEEESEEHHHHHH----HTSEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc----------cccccCChHHhhc----cCCEEE
Confidence 57788888443 344444431 23688856 999998876655543 2333335555554 469999
Q ss_pred ecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEE
Q 019550 184 GDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFV 219 (339)
Q Consensus 184 ~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv 219 (339)
+-.+... -.+.++. + ..+.++.+++
T Consensus 67 lav~p~~---------~~~v~~~-i-~~~~~~~~vi 91 (96)
T PF03807_consen 67 LAVKPQQ---------LPEVLSE-I-PHLLKGKLVI 91 (96)
T ss_dssp E-S-GGG---------HHHHHHH-H-HHHHTTSEEE
T ss_pred EEECHHH---------HHHHHHH-H-hhccCCCEEE
Confidence 9876332 3466776 5 4566666554
No 491
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.73 E-value=29 Score=32.86 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHh-c-CCcee
Q 019550 104 QNPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEK-R-NEKFD 180 (339)
Q Consensus 104 ~~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~-~-~~~yD 180 (339)
.+..+||+.|+|+ |..+..+++..+...|.+++-+++-.++++++ ... .-+.....+.. .+.+ . .+.+|
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~-g~~------~~~~~~~~~~~-~~~~~~~~~~vd 233 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM-GAD------VVINPREEDVV-EVKSVTDGTGVD 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh-Ccc------eeeCcccccHH-HHHHHcCCCCCC
Confidence 3457888876543 44556666766654788887777777777654 211 11111122222 2222 2 35699
Q ss_pred EEEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 181 VIFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 181 vIi~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
+|+-.... .+..+. +.+.|+++|.++.-
T Consensus 234 ~vld~~g~------------~~~~~~-~~~~l~~~G~~v~~ 261 (341)
T cd05281 234 VVLEMSGN------------PKAIEQ-GLKALTPGGRVSIL 261 (341)
T ss_pred EEEECCCC------------HHHHHH-HHHHhccCCEEEEE
Confidence 99875431 123445 46789999998754
No 492
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.71 E-value=25 Score=32.03 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=46.1
Q ss_pred CCCCeEEEEecchhHHHHHHHhc---CCCCEEEEEEcCHHH-HHHHHHhhhhhccccCCCCeEEEEccHHHH------HH
Q 019550 104 QNPKTVFIMGGGEGSAAREALKH---KSLEKVVMCDIDQEV-VDFCRRFLTVNQEAFCSKKLNLVVNDAKAE------LE 173 (339)
Q Consensus 104 ~~p~~VL~IG~G~G~~~~~l~~~---~~~~~v~~VEid~~v-i~~ar~~f~~~~~~~~~~rv~v~~~D~~~~------l~ 173 (339)
.++++||+.|++ |++++++++. .+..+|+++..++.- ++...+.+... ...+++++..|..+. ++
T Consensus 6 ~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~----~~~~v~~~~~D~~~~~~~~~~~~ 80 (253)
T PRK07904 6 GNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA----GASSVEVIDFDALDTDSHPKVID 80 (253)
T ss_pred CCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc----CCCceEEEEecCCChHHHHHHHH
Confidence 567889999975 5555555542 234689999888653 44333323221 124678877775321 22
Q ss_pred hc--CCceeEEEecCC
Q 019550 174 KR--NEKFDVIFGDLA 187 (339)
Q Consensus 174 ~~--~~~yDvIi~D~~ 187 (339)
.. .+..|+++.+..
T Consensus 81 ~~~~~g~id~li~~ag 96 (253)
T PRK07904 81 AAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHhcCCCCEEEEeee
Confidence 11 257999887664
No 493
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.70 E-value=65 Score=30.94 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=66.9
Q ss_pred eEEEEEeCCceEEE-EE-cCeeeccccChhhHHHHHhhhhcccCCCCCeEEEEecchhH--HHHHHHhcCCCCEEEEEEc
Q 019550 62 DIALLDTKRFGKVL-VI-DGKMQSAEVDEFIYHECLIHPPLLCHQNPKTVFIMGGGEGS--AAREALKHKSLEKVVMCDI 137 (339)
Q Consensus 62 ~I~V~e~~~~g~~L-~l-dG~~q~~~~d~~~Y~e~l~~~~l~~~~~p~~VL~IG~G~G~--~~~~l~~~~~~~~v~~VEi 137 (339)
.+.+++... |+.+ .+ ||...+..+.... -.+. .-.+..++++++.+||+|.=+ .++.++..++..+|.+.+.
T Consensus 86 ~v~l~d~~T-G~p~Ail~d~~~lT~~RTaA~--sala-~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r 161 (315)
T PRK06823 86 LMLAFSAKT-GEPQALLLDEGWLTALRTALA--GRIV-ARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR 161 (315)
T ss_pred EEEEEECCC-CceEEEEcCCChHHHHHHHHH--HHHH-HHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence 466666554 6655 34 8877766554211 1111 122344678999999998433 3344445577899999999
Q ss_pred CHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhcCCceeEEEecCC
Q 019550 138 DQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKRNEKFDVIFGDLA 187 (339)
Q Consensus 138 d~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~ 187 (339)
+++-.+...+.+... ..++.. ..|..+-+ +.-|+|+.--+
T Consensus 162 ~~~~a~~~~~~~~~~-----~~~v~~-~~~~~~av----~~ADIV~taT~ 201 (315)
T PRK06823 162 SETALEEYRQYAQAL-----GFAVNT-TLDAAEVA----HAANLIVTTTP 201 (315)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEE-ECCHHHHh----cCCCEEEEecC
Confidence 998877655554321 123332 35554444 45799997654
No 494
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=73.41 E-value=29 Score=32.83 Aligned_cols=98 Identities=21% Similarity=0.362 Sum_probs=57.0
Q ss_pred CCCeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHHhc--CCceeE
Q 019550 105 NPKTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELEKR--NEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~~~--~~~yDv 181 (339)
+.++||+.|+|. |..+.++++..+..+|.++..+++-.+.+++. +.. .-+.....+..+.+... .+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l-g~~------~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM-GAT------RAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh-CCc------EEecCccccHHHHHHHhcCCCCCCE
Confidence 467888877654 44556677777765788888888777777653 211 00111112333334322 356898
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEec
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQA 222 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~~ 222 (339)
|+--... ...++. +.+.|+++|.++...
T Consensus 236 v~d~~g~------------~~~~~~-~~~~l~~~G~~v~~g 263 (341)
T PRK05396 236 GLEMSGA------------PSAFRQ-MLDNMNHGGRIAMLG 263 (341)
T ss_pred EEECCCC------------HHHHHH-HHHHHhcCCEEEEEe
Confidence 8653221 134455 567899999988764
No 495
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=73.37 E-value=27 Score=32.63 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=57.2
Q ss_pred CCCeEEEEec--chhHHHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEccHHHHHH-hcCCceeE
Q 019550 105 NPKTVFIMGG--GEGSAAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVNDAKAELE-KRNEKFDV 181 (339)
Q Consensus 105 ~p~~VL~IG~--G~G~~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~D~~~~l~-~~~~~yDv 181 (339)
...+||+.|+ +.|..+.++++..+ .+|+++..++.-.+.+++.+... .-+.....+..+.+. ...+.+|+
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G-~~vi~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLG-ARVVGIAGSDEKCRWLVEELGFD------AAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHhhcCCc------eEEecCChhHHHHHHHhccCCceE
Confidence 3578999984 46667777777665 57999998888888777643321 111111112222222 22356998
Q ss_pred EEecCCCCCCCCccccCCcHHHHHHHHccccCCCcEEEEe
Q 019550 182 IFGDLADPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQ 221 (339)
Q Consensus 182 Ii~D~~d~~~~~p~~~L~t~ef~~~~~~~~L~~gGilv~~ 221 (339)
|+ |.. +. ...+. +.+.|+++|.++.-
T Consensus 218 vi-~~~-----g~-------~~~~~-~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YF-DNV-----GG-------EILDA-ALTLLNKGGRIALC 243 (329)
T ss_pred EE-Ecc-----hH-------HHHHH-HHHhcCCCceEEEE
Confidence 87 433 11 23444 46779999998754
No 496
>PRK06153 hypothetical protein; Provisional
Probab=73.36 E-value=4.2 Score=40.26 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCCeEEEEecc-hhHHHHHHHhcCCCCEEEEEEcC
Q 019550 105 NPKTVFIMGGG-EGSAAREALKHKSLEKVVMCDID 138 (339)
Q Consensus 105 ~p~~VL~IG~G-~G~~~~~l~~~~~~~~v~~VEid 138 (339)
...+|+++||| .|+...+.+...++.+++.||-|
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 35689999997 45555556655789999999988
No 497
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=73.35 E-value=6.2 Score=36.47 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCeEEEEecchhHHHHHHH-hcCCCCEEEEEEcCHHHHHHHHHhhhhhccccCCCCeEEEEc-cHHHHH---HhcCCcee
Q 019550 106 PKTVFIMGGGEGSAAREAL-KHKSLEKVVMCDIDQEVVDFCRRFLTVNQEAFCSKKLNLVVN-DAKAEL---EKRNEKFD 180 (339)
Q Consensus 106 p~~VL~IG~G~G~~~~~l~-~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~~~~~rv~v~~~-D~~~~l---~~~~~~yD 180 (339)
.-++||||.|.-.+=--+- +.++ -+.++-|||+..++.|+.....+.. + ...++++.+ |-...+ -...++||
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~-l-~~~I~lr~qk~~~~if~giig~nE~yd 155 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPG-L-ERAIRLRRQKDSDAIFNGIIGKNERYD 155 (292)
T ss_pred ceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcc-h-hhheeEEeccCccccccccccccceee
Confidence 3468999988765433222 2233 5789999999999999988754411 0 122333321 111111 22258899
Q ss_pred EEEecCCC
Q 019550 181 VIFGDLAD 188 (339)
Q Consensus 181 vIi~D~~d 188 (339)
+.+++++-
T Consensus 156 ~tlCNPPF 163 (292)
T COG3129 156 ATLCNPPF 163 (292)
T ss_pred eEecCCCc
Confidence 99999974
No 498
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.17 E-value=36 Score=32.46 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=41.6
Q ss_pred CeEEEEecch-hHHHHHHHhcCCCCEEEEEEcCHHHHH-HHHHhhhhhccccCCCCeEEE-EccHHHHHHhcCCceeEEE
Q 019550 107 KTVFIMGGGE-GSAAREALKHKSLEKVVMCDIDQEVVD-FCRRFLTVNQEAFCSKKLNLV-VNDAKAELEKRNEKFDVIF 183 (339)
Q Consensus 107 ~~VL~IG~G~-G~~~~~l~~~~~~~~v~~VEid~~vi~-~ar~~f~~~~~~~~~~rv~v~-~~D~~~~l~~~~~~yDvIi 183 (339)
.+|-+||+|. |.....++...+..+|.++|++++..+ .+....... .......++. .+|..+ + +.-|+||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~--~~~~~~~~i~~t~d~~~-~----~~aDiVI 74 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEAS--PVGGFDTKVTGTNNYAD-T----ANSDIVV 74 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhh--hccCCCcEEEecCCHHH-h----CCCCEEE
Confidence 4799999985 444444444334337999999877433 111121111 1111123443 356432 3 3469999
Q ss_pred ecCCCCC
Q 019550 184 GDLADPV 190 (339)
Q Consensus 184 ~D~~d~~ 190 (339)
+-...|.
T Consensus 75 itag~p~ 81 (305)
T TIGR01763 75 ITAGLPR 81 (305)
T ss_pred EcCCCCC
Confidence 9887554
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=73.11 E-value=39 Score=31.63 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=50.9
Q ss_pred cCeeeccccChhhHHHHHhh-hhcccCCCCCeEEEEecchhH-HHHHHHhcCCCCEEEEEEcCHHHHHHHHHhhhhhccc
Q 019550 78 DGKMQSAEVDEFIYHECLIH-PPLLCHQNPKTVFIMGGGEGS-AAREALKHKSLEKVVMCDIDQEVVDFCRRFLTVNQEA 155 (339)
Q Consensus 78 dG~~q~~~~d~~~Y~e~l~~-~~l~~~~~p~~VL~IG~G~G~-~~~~l~~~~~~~~v~~VEid~~vi~~ar~~f~~~~~~ 155 (339)
||.+....-|..-....+.. ... ....++||++|+|+-+ .....+...+..+|+++..+++-.+...+.+...
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~--~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~--- 170 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV--DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL--- 170 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC--CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc---
Confidence 45555555554333444432 111 2346789999986322 2222223355578999999976554433333211
Q ss_pred cCCCCeEEEEccHHHHHHhcCCceeEEEecCCCC
Q 019550 156 FCSKKLNLVVNDAKAELEKRNEKFDVIFGDLADP 189 (339)
Q Consensus 156 ~~~~rv~v~~~D~~~~l~~~~~~yDvIi~D~~d~ 189 (339)
..+.+ ..+.. ..-..+|+||.-.+.+
T Consensus 171 ---~~~~~-~~~~~----~~~~~~DivInaTp~g 196 (278)
T PRK00258 171 ---GKAEL-DLELQ----EELADFDLIINATSAG 196 (278)
T ss_pred ---cceee-cccch----hccccCCEEEECCcCC
Confidence 11333 11211 1125699999887643
No 500
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=73.09 E-value=68 Score=29.60 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.0
Q ss_pred HHhcCCceeEEEecCCC
Q 019550 172 LEKRNEKFDVIFGDLAD 188 (339)
Q Consensus 172 l~~~~~~yDvIi~D~~d 188 (339)
+....++||+||+|.+.
T Consensus 206 l~~l~~~yD~ViiD~pp 222 (274)
T TIGR03029 206 LNKVMGDYDVVIVDTPS 222 (274)
T ss_pred HHHHHhcCCEEEEeCCC
Confidence 34445789999999983
Done!