Query 019552
Match_columns 339
No_of_seqs 290 out of 2088
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04897 heat shock protein Ht 100.0 7.1E-37 1.5E-41 291.0 20.1 260 41-316 3-297 (298)
2 PRK02870 heat shock protein Ht 100.0 7.6E-35 1.7E-39 279.6 20.0 275 37-316 9-333 (336)
3 PRK02391 heat shock protein Ht 100.0 6.9E-34 1.5E-38 269.8 25.7 218 96-320 50-292 (296)
4 PRK03072 heat shock protein Ht 100.0 8.6E-34 1.9E-38 268.5 24.9 221 93-320 41-285 (288)
5 PRK03982 heat shock protein Ht 100.0 2.4E-33 5.3E-38 265.7 26.3 218 96-323 42-286 (288)
6 PRK01345 heat shock protein Ht 100.0 1.5E-33 3.3E-38 269.9 24.3 218 96-323 41-284 (317)
7 PRK03001 M48 family peptidase; 100.0 2.2E-33 4.7E-38 265.5 24.7 216 96-321 41-281 (283)
8 PRK01265 heat shock protein Ht 100.0 1.2E-32 2.6E-37 263.1 25.9 168 96-264 55-252 (324)
9 PRK05457 heat shock protein Ht 100.0 7.5E-33 1.6E-37 261.5 19.9 239 53-316 13-282 (284)
10 COG0501 HtpX Zn-dependent prot 100.0 4.5E-28 9.8E-33 229.9 22.5 215 90-322 61-301 (302)
11 PF01435 Peptidase_M48: Peptid 99.9 6.5E-27 1.4E-31 212.5 9.4 181 118-313 26-226 (226)
12 COG4783 Putative Zn-dependent 99.9 8E-21 1.7E-25 185.7 18.3 201 87-322 33-264 (484)
13 KOG2719 Metalloprotease [Gener 99.9 3.8E-20 8.2E-25 179.8 22.3 179 116-320 210-426 (428)
14 KOG2661 Peptidase family M48 [ 99.8 4.7E-18 1E-22 158.8 14.5 177 124-331 216-409 (424)
15 COG4784 Putative Zn-dependent 99.8 7.4E-18 1.6E-22 158.1 14.9 194 119-338 60-282 (479)
16 PF05569 Peptidase_M56: BlaR1 99.7 1.2E-16 2.5E-21 152.3 17.9 137 118-264 136-274 (299)
17 COG4219 MecR1 Antirepressor re 99.5 4.7E-13 1E-17 125.7 16.2 164 86-260 99-264 (337)
18 PF06114 DUF955: Domain of unk 97.6 0.00066 1.4E-08 54.6 10.4 73 162-260 28-100 (122)
19 PF04228 Zn_peptidase: Putativ 97.3 0.0017 3.6E-08 61.9 10.3 165 125-321 99-284 (292)
20 PF10463 Peptidase_U49: Peptid 97.2 0.00094 2E-08 60.4 6.5 42 178-246 99-140 (206)
21 PF01863 DUF45: Protein of unk 96.8 0.004 8.7E-08 55.7 7.0 68 124-196 113-180 (205)
22 PRK09672 phage exclusion prote 96.7 0.0043 9.4E-08 58.6 6.7 42 178-246 163-204 (305)
23 PRK04351 hypothetical protein; 96.3 0.02 4.4E-07 49.3 8.0 67 122-192 3-73 (149)
24 COG1451 Predicted metal-depend 95.9 0.037 8.1E-07 50.8 8.3 70 124-198 124-193 (223)
25 smart00731 SprT SprT homologue 95.4 0.041 8.8E-07 47.0 6.0 67 124-193 2-72 (146)
26 PF10263 SprT-like: SprT-like 95.3 0.1 2.2E-06 44.7 8.5 30 164-193 44-73 (157)
27 PF13203 DUF2201_N: Putative m 95.2 0.044 9.5E-07 52.0 6.4 47 148-198 32-78 (292)
28 PF10026 DUF2268: Predicted Zn 94.3 0.16 3.5E-06 45.5 7.3 71 124-195 4-80 (195)
29 PF04450 BSP: Peptidase of pla 93.9 0.33 7.2E-06 44.0 8.6 51 145-196 57-112 (205)
30 PRK04860 hypothetical protein; 93.2 0.31 6.6E-06 42.5 6.7 66 125-193 9-76 (160)
31 PF13699 DUF4157: Domain of un 92.9 0.24 5.1E-06 38.0 5.0 59 130-194 8-75 (79)
32 COG2856 Predicted Zn peptidase 92.9 0.09 2E-06 47.9 3.1 31 160-194 56-86 (213)
33 COG3091 SprT Zn-dependent meta 92.1 0.4 8.6E-06 41.1 5.8 66 122-192 4-73 (156)
34 PF04298 Zn_peptidase_2: Putat 89.4 7.9 0.00017 35.5 12.0 66 126-196 40-105 (222)
35 PF12388 Peptidase_M57: Dual-a 88.2 0.46 1E-05 43.1 3.2 35 163-199 118-153 (211)
36 COG3590 PepO Predicted metallo 85.2 0.17 3.8E-06 51.8 -1.3 45 146-193 446-500 (654)
37 PF02031 Peptidase_M7: Strepto 84.9 3.1 6.8E-05 34.8 6.1 37 151-192 53-89 (132)
38 COG2321 Predicted metalloprote 83.3 4.1 9E-05 38.4 6.9 64 127-193 98-180 (295)
39 PF08325 WLM: WLM domain; Int 82.1 4.8 0.00011 35.9 6.7 22 175-196 77-98 (186)
40 PF14247 DUF4344: Domain of un 80.2 5.8 0.00013 36.4 6.7 80 134-246 31-128 (220)
41 COG4900 Predicted metallopepti 79.6 6.6 0.00014 32.1 6.0 71 123-193 7-93 (133)
42 TIGR00181 pepF oligoendopeptid 79.3 2.1 4.6E-05 44.7 4.1 43 146-194 349-392 (591)
43 TIGR02289 M3_not_pepF oligoend 78.0 1.9 4.1E-05 44.8 3.2 65 124-194 273-351 (549)
44 PF13485 Peptidase_MA_2: Pepti 77.8 2.7 5.8E-05 33.5 3.4 31 163-196 11-41 (128)
45 COG2738 Predicted Zn-dependent 77.1 19 0.00042 32.4 8.7 67 127-198 44-110 (226)
46 COG1164 Oligoendopeptidase F [ 75.6 3.6 7.8E-05 43.3 4.5 49 141-194 345-394 (598)
47 PF01431 Peptidase_M13: Peptid 75.4 2 4.4E-05 38.3 2.3 42 152-196 1-52 (206)
48 cd04279 ZnMc_MMP_like_1 Zinc-d 74.1 2.1 4.5E-05 36.5 1.9 16 177-192 101-116 (156)
49 PF00413 Peptidase_M10: Matrix 73.7 2.2 4.8E-05 35.8 2.0 21 176-196 101-122 (154)
50 cd04270 ZnMc_TACE_like Zinc-de 71.9 2.6 5.7E-05 39.1 2.2 18 176-193 163-180 (244)
51 TIGR02290 M3_fam_3 oligoendope 71.4 3.3 7.2E-05 43.3 3.0 45 143-193 342-388 (587)
52 cd04268 ZnMc_MMP_like Zinc-dep 71.2 2.6 5.6E-05 36.0 1.8 31 162-192 72-106 (165)
53 PF09768 Peptidase_M76: Peptid 70.7 6.3 0.00014 34.8 4.2 66 122-192 15-83 (173)
54 COG3864 Uncharacterized protei 67.6 7.9 0.00017 37.3 4.3 35 163-197 52-86 (396)
55 PF14891 Peptidase_M91: Effect 67.4 17 0.00038 31.7 6.3 22 177-200 100-121 (174)
56 PF13688 Reprolysin_5: Metallo 65.9 3.2 6.9E-05 36.6 1.3 17 176-192 138-154 (196)
57 TIGR02414 pepN_proteo aminopep 64.9 8 0.00017 42.5 4.4 69 125-196 222-299 (863)
58 PF01447 Peptidase_M4: Thermol 63.9 3.7 8.1E-05 35.3 1.3 42 147-193 106-148 (150)
59 cd04269 ZnMc_adamalysin_II_lik 63.8 5 0.00011 35.4 2.2 16 177-192 128-143 (194)
60 PF13582 Reprolysin_3: Metallo 63.6 3.9 8.4E-05 33.1 1.3 12 181-192 108-119 (124)
61 COG4324 Predicted aminopeptida 62.9 6.5 0.00014 37.0 2.8 34 167-200 181-220 (376)
62 TIGR02412 pepN_strep_liv amino 60.4 16 0.00036 39.9 5.8 67 127-196 230-303 (831)
63 PF13574 Reprolysin_2: Metallo 59.9 4.8 0.0001 35.2 1.3 14 180-193 111-124 (173)
64 PF01433 Peptidase_M1: Peptida 59.1 19 0.00042 34.9 5.6 67 125-196 234-311 (390)
65 PF01421 Reprolysin: Reprolysi 59.0 7.9 0.00017 34.3 2.6 18 175-192 126-143 (199)
66 PF01432 Peptidase_M3: Peptida 58.9 7.7 0.00017 39.1 2.8 44 149-193 198-255 (458)
67 KOG1047 Bifunctional leukotrie 58.3 5.4 0.00012 41.1 1.5 47 141-194 255-302 (613)
68 PF10023 DUF2265: Predicted am 58.0 5.7 0.00012 38.7 1.6 32 168-199 150-187 (337)
69 cd06459 M3B_Oligoendopeptidase 57.9 8.5 0.00019 38.0 2.9 42 147-193 193-235 (427)
70 cd04278 ZnMc_MMP Zinc-dependen 57.7 5.1 0.00011 34.2 1.1 20 177-196 104-124 (157)
71 cd04267 ZnMc_ADAM_like Zinc-de 55.8 4.8 0.0001 35.4 0.6 16 177-192 130-145 (192)
72 TIGR03793 TOMM_pelo TOMM prope 55.5 52 0.0011 25.0 6.2 54 121-185 15-76 (77)
73 cd06455 M3A_TOP Peptidase M3 T 53.8 9.5 0.00021 38.8 2.5 43 150-193 218-276 (472)
74 cd00203 ZnMc Zinc-dependent me 53.0 6.3 0.00014 33.5 0.9 16 177-192 93-108 (167)
75 cd06258 Peptidase_M3_like The 52.9 12 0.00026 36.4 2.9 46 148-194 112-168 (365)
76 cd04271 ZnMc_ADAM_fungal Zinc- 52.9 4.7 0.0001 37.0 0.1 11 182-192 147-157 (228)
77 cd04272 ZnMc_salivary_gland_MP 52.2 8.3 0.00018 34.9 1.6 14 179-192 144-157 (220)
78 PF05572 Peptidase_M43: Pregna 52.0 8.3 0.00018 33.2 1.5 29 164-192 52-81 (154)
79 cd04276 ZnMc_MMP_like_2 Zinc-d 51.3 14 0.0003 33.3 2.8 31 162-192 91-128 (197)
80 KOG3624 M13 family peptidase [ 51.2 11 0.00023 40.3 2.5 44 149-195 480-533 (687)
81 PF13583 Reprolysin_4: Metallo 50.4 8.2 0.00018 34.8 1.3 16 182-197 139-155 (206)
82 PRK14015 pepN aminopeptidase N 50.3 19 0.00042 39.7 4.3 19 179-197 295-313 (875)
83 KOG1046 Puromycin-sensitive am 50.2 32 0.00069 38.0 6.0 60 134-196 272-340 (882)
84 cd06456 M3A_DCP_Oligopeptidase 49.2 15 0.00033 36.9 3.1 43 150-193 165-221 (422)
85 smart00235 ZnMc Zinc-dependent 45.9 11 0.00023 31.4 1.2 12 181-192 87-98 (140)
86 cd06460 M32_Taq Peptidase fami 42.0 2E+02 0.0043 28.8 9.6 66 126-196 110-175 (396)
87 KOG3314 Ku70-binding protein [ 42.0 67 0.0015 28.2 5.4 33 161-196 75-107 (194)
88 cd04277 ZnMc_serralysin_like Z 40.8 18 0.00038 31.7 1.8 79 118-197 32-131 (186)
89 PF13402 M60-like: Peptidase M 40.2 1.1E+02 0.0023 28.8 7.3 31 165-195 200-234 (307)
90 TIGR02411 leuko_A4_hydro leuko 39.4 17 0.00036 38.4 1.7 29 166-196 267-295 (601)
91 PF01400 Astacin: Astacin (Pep 38.7 47 0.001 29.4 4.3 62 124-192 23-91 (191)
92 cd04327 ZnMc_MMP_like_3 Zinc-d 38.6 21 0.00046 31.7 2.1 15 178-192 90-104 (198)
93 PF02163 Peptidase_M50: Peptid 38.6 21 0.00046 31.2 2.0 14 180-193 7-20 (192)
94 cd04273 ZnMc_ADAMTS_like Zinc- 35.5 7.1 0.00015 35.0 -1.6 13 180-192 140-152 (207)
95 cd06163 S2P-M50_PDZ_RseP-like 34.1 24 0.00052 31.3 1.6 12 181-192 10-21 (182)
96 PF12315 DUF3633: Protein of u 33.5 29 0.00062 31.6 2.0 20 173-192 86-105 (212)
97 cd06161 S2P-M50_SpoIVFB SpoIVF 33.5 28 0.0006 31.4 1.9 14 179-192 37-50 (208)
98 TIGR02421 QEGLA conserved hypo 33.4 73 0.0016 31.5 4.9 61 122-189 136-197 (366)
99 cd04280 ZnMc_astacin_like Zinc 33.2 41 0.00088 29.5 2.9 30 156-192 57-86 (180)
100 cd05709 S2P-M50 Site-2 proteas 32.8 29 0.00064 30.1 1.9 12 181-192 9-20 (180)
101 PF06262 DUF1025: Possibl zinc 32.4 41 0.00089 26.7 2.5 33 163-195 50-88 (97)
102 COG3824 Predicted Zn-dependent 32.3 40 0.00086 28.0 2.4 29 164-192 86-121 (136)
103 PF12725 DUF3810: Protein of u 31.9 27 0.00058 33.8 1.6 17 176-192 192-208 (318)
104 cd06164 S2P-M50_SpoIVFB_CBS Sp 31.3 32 0.00068 31.6 1.9 13 180-192 53-65 (227)
105 PF10460 Peptidase_M30: Peptid 30.8 40 0.00087 33.3 2.6 31 163-193 119-152 (366)
106 COG0308 PepN Aminopeptidase N 29.9 54 0.0012 36.1 3.8 70 124-197 246-324 (859)
107 PF06861 BALF1: BALF1 protein; 29.0 44 0.00095 29.4 2.3 24 174-197 126-149 (182)
108 cd06160 S2P-M50_like_2 Unchara 27.0 42 0.00092 29.7 1.9 14 179-192 40-53 (183)
109 TIGR03296 M6dom_TIGR03296 M6 f 26.5 16 0.00034 34.7 -1.0 12 181-192 166-177 (286)
110 cd03082 TRX_Fd_NuoE_W_FDH_beta 26.3 1.2E+02 0.0026 22.4 4.1 52 127-185 19-70 (72)
111 PF09471 Peptidase_M64: IgA Pe 26.0 40 0.00087 31.8 1.7 15 178-192 214-228 (264)
112 PF01457 Peptidase_M8: Leishma 24.8 66 0.0014 33.3 3.2 30 164-193 194-223 (521)
113 PF13398 Peptidase_M50B: Pepti 24.5 50 0.0011 29.6 1.9 17 177-193 19-35 (200)
114 cd06159 S2P-M50_PDZ_Arch Uncha 23.9 48 0.001 31.2 1.8 13 180-192 118-130 (263)
115 COG3930 Uncharacterized protei 23.0 1.5E+02 0.0032 29.3 4.9 48 141-190 209-256 (434)
116 KOG3658 Tumor necrosis factor- 22.6 20 0.00044 37.9 -1.1 30 163-192 369-404 (764)
117 PF14521 Aspzincin_M35: Lysine 22.6 1.5E+02 0.0031 25.2 4.4 29 163-191 77-107 (148)
118 PF08014 DUF1704: Domain of un 21.8 1.9E+02 0.004 28.5 5.5 66 122-194 111-180 (349)
119 COG4823 AbiF Abortive infectio 21.6 57 0.0012 30.7 1.7 14 177-190 89-102 (299)
120 cd06162 S2P-M50_PDZ_SREBP Ster 21.3 59 0.0013 30.9 1.8 13 180-192 135-147 (277)
121 PRK11767 SpoVR family protein; 20.7 1.3E+02 0.0028 31.0 4.2 69 124-192 19-121 (498)
122 PHA02456 zinc metallopeptidase 20.1 57 0.0012 26.7 1.2 27 163-193 66-92 (141)
No 1
>PRK04897 heat shock protein HtpX; Provisional
Probab=100.00 E-value=7.1e-37 Score=290.96 Aligned_cols=260 Identities=17% Similarity=0.222 Sum_probs=177.3
Q ss_pred hhhccccc-ccceeeeeeeeheeeecCCCccccccccchhHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhCcccccCC
Q 019552 41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119 (339)
Q Consensus 41 ~~~~~~~~-~t~~~~~~~~~~~~~~~gl~~~~~~h~~d~~~~~~l~~ipg~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~ 119 (339)
|.|+++|+ ||-+++ ..+...+.+.|...+.+..+ +......+.. +..++..++.++....+..+..+ .+++++
T Consensus 3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-a~~v~~ 76 (298)
T PRK04897 3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIAL---IIGVIYALIMIFQSTNVVMSMNH-AREVTE 76 (298)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHH---HHHHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence 78999999 887655 55545555555422211111 1111111111 22235567778888888877664 568889
Q ss_pred CChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhHH
Q 019552 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL 199 (339)
Q Consensus 120 ~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~~ 199 (339)
+|.|+|++.++++|++.|++.|++|+++++.+|||++|.++.++.|++++||++.+++||+++|+|||+||++++|..++
T Consensus 77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~ 156 (298)
T PRK04897 77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS 156 (298)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999887
Q ss_pred HHHHHHHHHH-----------Hhc-----------hhhH----HHH---HH---HHH-H-HHHHHHHHHHHHHHHHHHHh
Q 019552 200 TFANILTLGA-----------YTI-----------PGIG----GMI---AQ---SLE-E-QLFRWLRAAELTCDRAALLV 245 (339)
Q Consensus 200 ~~~~~l~~~~-----------~~~-----------p~~~----~~i---~~---~l~-~-~l~~~sR~~E~~AD~~A~~~ 245 (339)
++...+..+. ++. +... .++ .. .+. . ..+.+||.+||+||++|+++
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l 236 (298)
T PRK04897 157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL 236 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7654322111 000 0000 000 00 111 1 12468999999999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHh
Q 019552 246 SQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA 316 (339)
Q Consensus 246 ~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~ 316 (339)
++||+++++||.|++.++.... +.+.+ -+..|- ..+.+......+++|||++.+||++|++
T Consensus 237 t~~p~~La~AL~KL~~~~~~~~-~~~~~----~~~~~i-----~~p~~~~~~~~lfsTHP~~~eRI~~L~~ 297 (298)
T PRK04897 237 TRNPQGLISALEKISNSQPMKH-PVDDA----SAALYI-----SDPLKKKGLSKLFDTHPPIEERIERLKN 297 (298)
T ss_pred hCCHHHHHHHHHHHHhcccccc-ccChH----HHHhcc-----CCCcccchHHHHHcCCcCHHHHHHHHHc
Confidence 9999999999999998654211 11110 001111 0111100123579999999999999985
No 2
>PRK02870 heat shock protein HtpX; Provisional
Probab=100.00 E-value=7.6e-35 Score=279.62 Aligned_cols=275 Identities=21% Similarity=0.264 Sum_probs=175.7
Q ss_pred cccchhhc-cccc-ccceeeeeeeeheeeecCCCcc------ccccc-cchhHHHH--HHHccchhH------HHHHHHH
Q 019552 37 GNFKFGSM-KQSR-RMRLVPVCRAAASVVFRDLDAD------DFRHP-LDKQNTLL--LRAIPGLND------LGRALLG 99 (339)
Q Consensus 37 ~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~gl~~~------~~~h~-~d~~~~~~--l~~ipg~~~------~~~~~i~ 99 (339)
|+-.|++. ++|+ ||.+++ ..+...+.+.|...+ .|.|+ +....+.+ ++.+|...+ ++..++.
T Consensus 9 ~~~~~~~~i~~n~~kt~~l~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
T PRK02870 9 GSVDWRKVIRRNRLKTRAVI-ATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILVT 87 (336)
T ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 34456555 8888 998766 555577777775443 23332 32323222 233332111 1223345
Q ss_pred HHHHHHHHHHHhCcccccCCC-----ChHHHHHHHHHHHHHcCCC-CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHh
Q 019552 100 TVTEQIMLLENIGTSVLVSKN-----QLPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (339)
Q Consensus 100 ~~~~~~~~~~~~~~~v~v~~~-----~~p~L~~~l~~l~~~lgi~-~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~ 173 (339)
+++...+.+...+.+ .++|. +.|+|++.++++|++.|++ .|++|+++++.+|||++|++..++.|++++||++
T Consensus 88 y~~~~~~~l~~~~a~-~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~ 166 (336)
T PRK02870 88 FQNFDKIMLSGTEYK-EITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLE 166 (336)
T ss_pred HHhhHHHHHHHcCCE-EcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhh
Confidence 556666666655433 44554 4789999999999999999 8999999999999999998666789999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH----HH----H-hchh----------hHHHHHHH----HHH-HHHH
Q 019552 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTL----GA----Y-TIPG----------IGGMIAQS----LEE-QLFR 229 (339)
Q Consensus 174 ~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~----~~----~-~~p~----------~~~~i~~~----l~~-~l~~ 229 (339)
.+++||+++|||||+||++++|....++...+.. +. + ++.. .+.++... +.. ..+.
T Consensus 167 ~L~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~ 246 (336)
T PRK02870 167 KLDRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFYSFMGNRRNSGANRARMIILILRYVLPILTVLLMLF 246 (336)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987765433221 10 0 0000 00011111 111 2246
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCccc--ccH-HHHHHHHhhccccCCCCCchhhhccccccCCCCC
Q 019552 230 WLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQ--LNV-DAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPL 306 (339)
Q Consensus 230 ~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~--~~~-~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~ 306 (339)
+||.+||+||++|+++++||+++++||.||+.++...+.+ .+. .+=-..+.-|-. ++...+. +....+|+|||+
T Consensus 247 iSR~rEy~AD~~Aa~ltg~p~aLasAL~KL~~~~~~~~~~~~~~~~~~~~~~a~~~i~-~p~~~~~--~~~~~LfsTHPp 323 (336)
T PRK02870 247 LSRTREYMADAGAVELMRDNEPMARALQKISNDHAQNDEQYAYKHTDHESTRRAAYLF-DPAGISP--GSLSDAFSTHPS 323 (336)
T ss_pred HHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCccccccccccCChhhhhhhcc-CCccccc--ccHhHHHcCCCC
Confidence 8999999999999999999999999999999876543210 000 000000001100 0000000 012368999999
Q ss_pred hHHHHHHHHh
Q 019552 307 LVLRAREIDA 316 (339)
Q Consensus 307 ~~~Ri~~L~~ 316 (339)
+++||++|+.
T Consensus 324 ~e~RI~rL~~ 333 (336)
T PRK02870 324 IENRLAALGG 333 (336)
T ss_pred HHHHHHHHhh
Confidence 9999999985
No 3
>PRK02391 heat shock protein HtpX; Provisional
Probab=100.00 E-value=6.9e-34 Score=269.82 Aligned_cols=218 Identities=28% Similarity=0.394 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc
Q 019552 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (339)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L 175 (339)
.++.+++...+.....+ ..+++|.++|++++.++++|++.|++.|++|+++++.+|||++|.+..++.|++++||++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L 128 (296)
T PRK02391 50 LLAQYFFSDKLALWSMG-ARIVSEDEYPELHAMVERLCALADLPKPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL 128 (296)
T ss_pred HHHHHHHhHHHHHHHcC-CEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC
Confidence 44566666666666665 45889999999999999999999999999999999999999999876778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh-------ch--------h-hHH-H---HHH----HHHH-HHHHH
Q 019552 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYT-------IP--------G-IGG-M---IAQ----SLEE-QLFRW 230 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~-------~p--------~-~~~-~---i~~----~l~~-~l~~~ 230 (339)
++||+++|+|||+||++++|..++++..++..+... .. . .+. + +.. .+.. ....+
T Consensus 129 ~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (296)
T PRK02391 129 DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLIVRWGFYFGGFGGRGGGGGGGGILVVILVSLVVWAISFLLIRAL 208 (296)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765443322110 00 0 000 0 111 1111 13468
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHH
Q 019552 231 LRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLR 310 (339)
Q Consensus 231 sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~R 310 (339)
||.+||+||++|+++++||+++++||.|++.+....+.+ +...- +.+..+.-......+++ ..+++|||++.+|
T Consensus 209 SR~rE~~AD~~Aa~ltg~p~~LasAL~KL~~~~~~~~~~-~~~~~-~~~~~~~i~p~~~~~~~----~~l~sTHP~~~eR 282 (296)
T PRK02391 209 SRYREFAADRGAAIITGRPSALASALMKISGRMDRVPTE-DLREA-EGMNAFFIIPALSGGSL----GRLFSTHPPLEKR 282 (296)
T ss_pred HHHHHHHHhHHHHHHhCCHHHHHHHHHHHHcccccCCch-hhccc-HHHhhhcccCCCCcchH----HHHhcCCcCHHHH
Confidence 999999999999999999999999999999864322211 00000 00010000000011222 3579999999999
Q ss_pred HHHHHhhhhh
Q 019552 311 AREIDAWSRS 320 (339)
Q Consensus 311 i~~L~~~~~s 320 (339)
|++|+++..+
T Consensus 283 I~~L~~~~~~ 292 (296)
T PRK02391 283 IAQLEKLERE 292 (296)
T ss_pred HHHHHHHHHh
Confidence 9999987644
No 4
>PRK03072 heat shock protein HtpX; Provisional
Probab=100.00 E-value=8.6e-34 Score=268.54 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHH
Q 019552 93 LGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLV 172 (339)
Q Consensus 93 ~~~~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl 172 (339)
++..++.+++...+.+..++ ..+++|.++|+|++.++++|++.|++.|++|+++++.+|||++|...+++.|+++++|+
T Consensus 41 ~~~~~~~~~~s~~~~~~~~~-~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl 119 (288)
T PRK03072 41 VGMNAYVYWNSDKLALRAMH-AQPVSEVQAPAMYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPRNAAVCCTEGIL 119 (288)
T ss_pred HHHHHHHHHHhHHHHHHhcC-CEECChhhhHHHHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCCCcEEEecHHHH
Confidence 34456677777777776664 45789999999999999999999999999999999999999999655667899999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH----H---Hhc-----------hh-hHHHHHHHH----HH-HHH
Q 019552 173 ELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLG----A---YTI-----------PG-IGGMIAQSL----EE-QLF 228 (339)
Q Consensus 173 ~~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~----~---~~~-----------p~-~~~~i~~~l----~~-~l~ 228 (339)
+.+++||+++|||||+||++++|..++++...+... . .+. +. ++.++...+ .. ..+
T Consensus 120 ~~l~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (288)
T PRK03072 120 QILNERELRGVLGHELSHVYNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQL 199 (288)
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765432211 0 000 00 111111111 11 225
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChH
Q 019552 229 RWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLV 308 (339)
Q Consensus 229 ~~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~ 308 (339)
.+||.+||+||++|+++++||++++++|.||..+....+.+... .--+++.-+-. ++...+++ ..+++|||++.
T Consensus 200 ~~SR~rE~~AD~~A~~l~~~p~~La~AL~KL~~~~~~~~~~~~~-~~~~~~~~~i~-~p~~~~~~----~~l~sTHP~~~ 273 (288)
T PRK03072 200 AISRSREYQADESGAELTGDPLALASALRKISGGVQAAPLPPEP-QLASQAHLMIA-NPFRAGGI----GRLFSTHPPMA 273 (288)
T ss_pred HHHhHHHHHHhHHHHHHhCCHHHHHHHHHHHHhccccCCCCccc-cchhhhhhhhc-CcccchHH----HHHHcCCcCHH
Confidence 68999999999999999999999999999999765322111000 00001111100 00001122 35799999999
Q ss_pred HHHHHHHhhhhh
Q 019552 309 LRAREIDAWSRS 320 (339)
Q Consensus 309 ~Ri~~L~~~~~s 320 (339)
+||++|++++.+
T Consensus 274 eRI~~L~~~~~~ 285 (288)
T PRK03072 274 DRIARLEQMAGR 285 (288)
T ss_pred HHHHHHHHHhhh
Confidence 999999988754
No 5
>PRK03982 heat shock protein HtpX; Provisional
Probab=100.00 E-value=2.4e-33 Score=265.73 Aligned_cols=218 Identities=23% Similarity=0.313 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc
Q 019552 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (339)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L 175 (339)
.++.+++...+..... +..++++.+.|++++.++++|+++|++.|++|+++++.+|||++|.+++++.|++++||++.+
T Consensus 42 ~~~~~~~~~~i~~~~~-~~~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l 120 (288)
T PRK03982 42 NLISYYYSDKIVLASY-NARIVSEEEAPELYRIVERLAERANIPKPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLL 120 (288)
T ss_pred HHHHHHHhHHHHHHhc-CCEECChhhhHHHHHHHHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhC
Confidence 3445555555554443 456778889999999999999999999999999999999999999866678899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH----HH---h---chh-----------hHHHHHHH---H-H-HHHHH
Q 019552 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTLG----AY---T---IPG-----------IGGMIAQS---L-E-EQLFR 229 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~----~~---~---~p~-----------~~~~i~~~---l-~-~~l~~ 229 (339)
|+||++||+|||+||++++|..++++...+... .. + ... ++.++... + . .....
T Consensus 121 ~~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (288)
T PRK03982 121 NEDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWGLWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFA 200 (288)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887755432111 00 0 000 11111111 1 1 11246
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcc-cccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChH
Q 019552 230 WLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLAD-QLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLV 308 (339)
Q Consensus 230 ~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~-~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~ 308 (339)
+||.+|++||++|++++++|++++++|.|++......+. +-+. .. +..+- .++.+.+++ ..+++|||++.
T Consensus 201 ~SR~~E~~AD~~A~~~~~~p~~l~~aL~kL~~~~~~~~~~~~~~-~~---~~~~~-~~p~~~~~~----~~l~sTHP~~~ 271 (288)
T PRK03982 201 ISRQREFSADEGGARLTGNPLALANALQKLEKGVRYIPLKNGNP-AT---AHMFI-INPFRGQFL----ANLFSTHPPTE 271 (288)
T ss_pred HhHHHHHHHhHHHHHHhCCHHHHHHHHHHHHhhhccCCCCCCCH-HH---HhHhh-cCCCCCchh----hHHhCCCcCHH
Confidence 899999999999999999999999999999976432211 1111 00 00000 011111222 35799999999
Q ss_pred HHHHHHHhhhhhhch
Q 019552 309 LRAREIDAWSRSQDY 323 (339)
Q Consensus 309 ~Ri~~L~~~~~s~~y 323 (339)
+||++|++++++..|
T Consensus 272 eRI~~l~~~~~~~~~ 286 (288)
T PRK03982 272 ERIERLLEMAQEMGY 286 (288)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887655
No 6
>PRK01345 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.5e-33 Score=269.89 Aligned_cols=218 Identities=22% Similarity=0.285 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc
Q 019552 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (339)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L 175 (339)
.++.++....+..... +..++++.+.|+|++.++++|++.|++.|++|+++++.+|||++|.+.+++.|+|++||++.+
T Consensus 41 ~~~~~~~~~~~~~~~~-~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L 119 (317)
T PRK01345 41 NLFSYWNSDKMVLRMY-GAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRL 119 (317)
T ss_pred HHHHHHHhHHHHHHHc-CCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhC
Confidence 4455555555555555 455788999999999999999999999999999999999999999765677999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH----HH---Hhch-----------hhHHHHHH---HHH--HHHHHHHH
Q 019552 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTL----GA---YTIP-----------GIGGMIAQ---SLE--EQLFRWLR 232 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~----~~---~~~p-----------~~~~~i~~---~l~--~~l~~~sR 232 (339)
++||+++|||||+||++++|..++++...+.. +. .+.. .++.++.. .+. ...+.+||
T Consensus 120 ~~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR 199 (317)
T PRK01345 120 SPEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISR 199 (317)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988775433211 11 0000 01111111 111 12246899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcccc---cHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHH
Q 019552 233 AAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQL---NVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVL 309 (339)
Q Consensus 233 ~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~---~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~ 309 (339)
.+|++||++|+++++||++++++|.|++.+....+.+. +. +. +..+-. + +. .......+++|||++.+
T Consensus 200 ~rE~~AD~~A~~ltg~p~~L~~AL~KL~~~~~~~~~~~~~~~~-~~---~~~~~~-~--~~--~~~~~~~lfsTHP~~~e 270 (317)
T PRK01345 200 TREYAADRRGAEICGNPLWLASALGKIERGAHGVPNEEAERNP-AT---AHMFII-N--PL--SGEGMDNLFSTHPATEN 270 (317)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccCcccccccCh-HH---HHHHhc-C--Cc--cccchhHHhcCCcChHH
Confidence 99999999999999999999999999997643211100 00 00 000000 0 00 00012357899999999
Q ss_pred HHHHHHhhhhhhch
Q 019552 310 RAREIDAWSRSQDY 323 (339)
Q Consensus 310 Ri~~L~~~~~s~~y 323 (339)
||++|++++++..+
T Consensus 271 RI~~L~~~~~~~~~ 284 (317)
T PRK01345 271 RIAALQRMAGEMGG 284 (317)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887554
No 7
>PRK03001 M48 family peptidase; Provisional
Probab=100.00 E-value=2.2e-33 Score=265.49 Aligned_cols=216 Identities=22% Similarity=0.261 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc
Q 019552 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (339)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L 175 (339)
.++.+++.........+. .++++.+.|+|++.++++|+++|++.|++|+++++.+|||++|.++.++.|+|+++|++.+
T Consensus 41 ~~~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l 119 (283)
T PRK03001 41 NFFSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHAAVAATTGILRVL 119 (283)
T ss_pred HHHHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCeEEEecHHHHhhC
Confidence 344445555555555554 6788899999999999999999999999999999999999999765567899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH----HHH---hc----------hhhHHHHHHHH-----HHHHHHHHHH
Q 019552 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTL----GAY---TI----------PGIGGMIAQSL-----EEQLFRWLRA 233 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~----~~~---~~----------p~~~~~i~~~l-----~~~l~~~sR~ 233 (339)
++||+++|||||+||++++|..++++...+.. +.. +. .....++...+ ......|||.
T Consensus 120 ~~~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~ 199 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFFGGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRA 199 (283)
T ss_pred CHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999998875442211 110 00 00111111111 1122468999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcc---cccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHH
Q 019552 234 AELTCDRAALLVSQDPKVVISVLMKLAGGCPSLAD---QLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLR 310 (339)
Q Consensus 234 ~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~---~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~R 310 (339)
+|++||++|+++++||++++++|.|++..+...+. +.+.+. +..+.. ++...+.+ ..+++|||++.+|
T Consensus 200 ~E~~AD~~a~~l~~~p~~l~~AL~Kl~~~~~~~p~~~~~~~~~~----~~~~~~-~p~~~~~~----~~l~~THP~~~eR 270 (283)
T PRK03001 200 REFEADRGGARISGDPQALASALDKIHRYASGIPFQAAEAHPAT----AQMMII-NPLSGGGL----ANLFSTHPSTEER 270 (283)
T ss_pred HHHHHhHHHHHHhCCHHHHHHHHHHHHhhhccCCcccccCCHHH----HHHHhc-CCCCcchH----HHHHcCCcCHHHH
Confidence 99999999999999999999999999986543211 001100 000000 00000112 3578999999999
Q ss_pred HHHHHhhhhhh
Q 019552 311 AREIDAWSRSQ 321 (339)
Q Consensus 311 i~~L~~~~~s~ 321 (339)
|++|+++++++
T Consensus 271 I~~l~~~~~~~ 281 (283)
T PRK03001 271 IARLMAMARTG 281 (283)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
No 8
>PRK01265 heat shock protein HtpX; Provisional
Probab=100.00 E-value=1.2e-32 Score=263.07 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHhCcccccCCCC--hHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHh
Q 019552 96 ALLGTVTEQIMLLENIGTSVLVSKNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (339)
Q Consensus 96 ~~i~~~~~~~~~~~~~~~~v~v~~~~--~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~ 173 (339)
.++.+++...+.....+ ..+++|.+ +|+|++.++++|++.|++.|++|+++++.+|||++|.+.+++.|+++++|++
T Consensus 55 ~~~~~~~sp~li~~~~~-a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~ 133 (324)
T PRK01265 55 NIIQWLFGPYMINAAYR-TVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLK 133 (324)
T ss_pred HHHHHHHhHHHHHHHcC-CeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCCCEEEEehHHHh
Confidence 44556666666666554 33556655 8999999999999999999999999999999999997555689999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-------h---ch---------hhH----HHHH---HHHH-HH
Q 019552 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------T---IP---------GIG----GMIA---QSLE-EQ 226 (339)
Q Consensus 174 ~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~-------~---~p---------~~~----~~i~---~~l~-~~ 226 (339)
.+++||+++|+|||+||++++|..++++...+..+.. + .. +.+ .++. ..+. ..
T Consensus 134 ~l~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ll~~~~~~i~~~l 213 (324)
T PRK01265 134 ILNRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLL 213 (324)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988775433221110 0 00 000 0111 1111 22
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhcCCC
Q 019552 227 LFRWLRAAELTCDRAALL-VSQDPKVVISVLMKLAGGCP 264 (339)
Q Consensus 227 l~~~sR~~E~~AD~~A~~-~~~~p~~~~~aL~kla~~~~ 264 (339)
.+.+||.+||+||++|++ ++++|+++++||.|+..+..
T Consensus 214 ~~aiSR~rEy~AD~~aa~~~tg~p~~LasAL~KL~~~~~ 252 (324)
T PRK01265 214 VLSINRMREAYADVNSALTVPGGAENLQTALAKITLSMD 252 (324)
T ss_pred HHHHHHHHHHHHhHHHHHhhcCChHHHHHHHHHHHhccc
Confidence 356899999999999998 56999999999999998654
No 9
>PRK05457 heat shock protein HtpX; Provisional
Probab=100.00 E-value=7.5e-33 Score=261.45 Aligned_cols=239 Identities=20% Similarity=0.267 Sum_probs=162.0
Q ss_pred eeeeeeeheeeecCCCccccccccchhHHHHHHHccchhHHHHHHHHHHHHHHHHHHHhCcccccC-CCC--hHHHHHHH
Q 019552 53 VPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVS-KNQ--LPELHQLM 129 (339)
Q Consensus 53 ~~~~~~~~~~~~~gl~~~~~~h~~d~~~~~~l~~ipg~~~~~~~~i~~~~~~~~~~~~~~~~v~v~-~~~--~p~L~~~l 129 (339)
+++.+++....+.|+.. | .+......+..+ ..++..++.+++..++..+..+.+ .++ |.+ .|+|++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~a~-~i~~~~~~~~~~L~~~v 83 (284)
T PRK05457 13 AVMLVLGIVLSLLGVQS--Y---LNLGGLLVFAAV---FGFGGSFISLLMSKWMAKRSTGAE-VIEQPRNETERWLVETV 83 (284)
T ss_pred HHHHHHHHHHHHHHHHH--H---hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCe-ECCCCCCchHHHHHHHH
Confidence 55566766666666533 2 122222222222 234566777788888777766544 443 433 45699999
Q ss_pred HHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHH
Q 019552 130 TEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANIL-TLG 208 (339)
Q Consensus 130 ~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l-~~~ 208 (339)
+++|++.|++.|++|+++++.+|||++|.++++..|++++||++.||+||+++|+|||+||++++|..+.++...+ ..+
T Consensus 84 ~~la~~~g~p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~ 163 (284)
T PRK05457 84 ARQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTGLLQNMSRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTF 163 (284)
T ss_pred HHHHHhCCCCCCCEEEEeCCCceEEEecCCCCCeEEEeehHHhhhCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877778899999999999999999999999999999999876543221 110
Q ss_pred --------HH----hc------hhhHHH----HH----HHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 019552 209 --------AY----TI------PGIGGM----IA----QSLEE-QLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAG 261 (339)
Q Consensus 209 --------~~----~~------p~~~~~----i~----~~l~~-~l~~~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~ 261 (339)
.. +. ++++.. +. ..+.. ..+.+||.+||+||++|+++++ |+++++||.|+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ll~~~~SR~rEy~AD~~Aa~ltg-p~~L~~AL~KL~~ 242 (284)
T PRK05457 164 VIFLSRIIAQIVDRFVSGNEEGNGIGYFIVSIVLEIVFGILASIIVMWFSRHREFRADAGGAKLAG-REKMIAALQRLKT 242 (284)
T ss_pred HHHHHHHHHHHHHhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhC-HHHHHHHHHHHHh
Confidence 00 00 111111 10 11111 2246899999999999999997 9999999999998
Q ss_pred CCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHh
Q 019552 262 GCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDA 316 (339)
Q Consensus 262 ~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~ 316 (339)
++.. +..-....+. + .+ + .. ...|++|||++.+||++|++
T Consensus 243 ~~~~-~~~~~~~~~~-----i--~~--~-~~----~~~lfsTHP~~~eRI~~L~~ 282 (284)
T PRK05457 243 SYEP-QLPGSMAAFG-----I--NG--K-SG----LSELFMSHPPLEKRIAALRS 282 (284)
T ss_pred hCcc-CCChHHHHhh-----c--cC--c-hh----HHHHHcCCcCHHHHHHHHHh
Confidence 7642 1100011111 0 01 0 01 13579999999999999975
No 10
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-28 Score=229.90 Aligned_cols=215 Identities=28% Similarity=0.355 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHcCCC-CCcEEEEeCCCCcEEEeeccCCc
Q 019552 90 LNDLGRALLGTVTEQIMLLENIGTSVLVSKN--QLP----ELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKK 162 (339)
Q Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~--~~p----~L~~~l~~l~~~lgi~-~p~v~v~~~~~~NAfa~G~~g~~ 162 (339)
+..+...+++++..+.+.....+.. .+.+. ..+ ++...+.+++...+++ .|+++|++++.+|||++|.++++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~~~~NAFa~g~~~~~ 139 (302)
T COG0501 61 LLAFAALLISLLFSKALVLKSLGAL-TLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILETPQPNAFALGGGPKN 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcee-ecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecCCCccceecCCCCCC
Confidence 3334556667777777777666542 22222 234 4444899999999999 89999999999999999865567
Q ss_pred cEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHH----hchh---------hHHHHH----H-HH
Q 019552 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW-LTFANILTLGAY----TIPG---------IGGMIA----Q-SL 223 (339)
Q Consensus 163 ~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~-~~~~~~l~~~~~----~~p~---------~~~~i~----~-~l 223 (339)
+.|+|++||++.+|+||+++|||||+||++++|... .++...+....+ .... ....+. . ..
T Consensus 140 ~~V~vt~gLl~~l~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (302)
T COG0501 140 GRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLA 219 (302)
T ss_pred eeEEecHHHHhhCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999997 333322221110 0000 000111 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCC
Q 019552 224 EEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLS 303 (339)
Q Consensus 224 ~~~l~~~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~T 303 (339)
....+.|||.+|++||+.|+++++ |+.++++|.|+...... .+.+.|..+.. ..+ ....+++|
T Consensus 220 ~~~~~~~SR~~E~~AD~~a~~l~~-~~~l~~aL~kl~~~~~~----~~~~~~~~~~~--------~~~----~~~~~~st 282 (302)
T COG0501 220 TLLVLAFSRKREYEADRFAAKLTG-PEKLASALQKLARLSGR----ANSKAFIASGF--------SGG----RLQALFST 282 (302)
T ss_pred HHHHHHHHHHhHHhhhhchhhccC-hHHHHHHHHHHHhhhcc----cchhhhhcCcc--------ccc----chHHHHhc
Confidence 223467999999999999999999 99999999999986532 01111111100 000 01357999
Q ss_pred CCChHHHHHHHHhhhhhhc
Q 019552 304 HPLLVLRAREIDAWSRSQD 322 (339)
Q Consensus 304 HP~~~~Ri~~L~~~~~s~~ 322 (339)
||++.+||++|+++..+..
T Consensus 283 HP~~~~Ri~~L~~~~~~~~ 301 (302)
T COG0501 283 HPPLAERIAALRQLALTVG 301 (302)
T ss_pred CCCHHHHHHHHHHHHHhhC
Confidence 9999999999999987654
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.94 E-value=6.5e-27 Score=212.55 Aligned_cols=181 Identities=27% Similarity=0.326 Sum_probs=98.6
Q ss_pred CCCChHHHHHHHHHHHHHc--CCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 019552 118 SKNQLPELHQLMTEAAEIL--NLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 195 (339)
Q Consensus 118 ~~~~~p~L~~~l~~l~~~l--gi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H 195 (339)
.+.+.|+|++.++++|+++ +.+.|++|+++++.+|||++|.+ .++.|+|+++|++.++++|+++|||||+||++++|
T Consensus 26 ~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~-~~~~I~v~~~ll~~~~~~el~aVlaHElgH~~~~h 104 (226)
T PF01435_consen 26 TPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGG-PRKRIVVTSGLLESLSEDELAAVLAHELGHIKHRH 104 (226)
T ss_dssp -B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTT-C--EEEEEHHHHHHSSHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccC-CCcEEEEeChhhhcccHHHHHHHHHHHHHHHHcCC
Confidence 4788999999999999999 77788999999999999999964 46899999999999999999999999999999999
Q ss_pred hhHHHHHHHHH----HHHHh-c---hhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 019552 196 GVWLTFANILT----LGAYT-I---PGIGGM----------IAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLM 257 (339)
Q Consensus 196 ~~~~~~~~~l~----~~~~~-~---p~~~~~----------i~~~l~~~l~~~sR~~E~~AD~~A~~~~~~p~~~~~aL~ 257 (339)
..+.+....+. ..... . ...... +..........|||.+|++||++|+++++++..+++++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l~~a~~ 184 (226)
T PF01435_consen 105 ILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALLARALY 184 (226)
T ss_dssp CCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------HHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHHHHhCC
Confidence 97653222111 11100 0 000000 000111133578999999999999999999887766666
Q ss_pred HHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHH
Q 019552 258 KLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRARE 313 (339)
Q Consensus 258 kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~ 313 (339)
++... ..+++...+-......... ....+++|||++.+||++
T Consensus 185 ~~~~~----------~~~l~~l~~~~~~~~~~~~----~~~~~~~tHP~~~~Ri~~ 226 (226)
T PF01435_consen 185 KPAAA----------ISALEKLAEANSMRPDSDW----RYSSLFSTHPSTEERIAA 226 (226)
T ss_dssp -TTHH----------HHHHHHHT---------------------------HHHHHH
T ss_pred CHHHH----------HHHHHHHHHHhccccCCcc----ccchhcCCCcCHHHHhCc
Confidence 65543 2233322220000111111 123578999999999975
No 12
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.86 E-value=8e-21 Score=185.71 Aligned_cols=201 Identities=22% Similarity=0.287 Sum_probs=133.3
Q ss_pred ccchhHHHHHHHHHHHHHH----HHHHHhCcccccCCCChHHHHHHHHHHHHH----cCCC-C-CcEEEEeCCCCcEEEe
Q 019552 87 IPGLNDLGRALLGTVTEQI----MLLENIGTSVLVSKNQLPELHQLMTEAAEI----LNLE-A-PDLYVRQSPVPNAYTL 156 (339)
Q Consensus 87 ipg~~~~~~~~i~~~~~~~----~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~----lgi~-~-p~v~v~~~~~~NAfa~ 156 (339)
+|.+....++.++.-.+.. +..+..+ . +....+|+|.+.++++... .|.+ . -++++++++..|||++
T Consensus 33 lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~-~--~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~ 109 (484)
T COG4783 33 LPDIGVSAGSTLSPAQEVALGDPANAQLRG-S--VPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFAT 109 (484)
T ss_pred cchhhhhhhhcCCHHHHHHhhHHHHHHhcc-C--CCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhhc
Confidence 3555455554444433332 2233332 2 3446788888888876654 4554 3 3788899999999998
Q ss_pred eccCCccEEEECHHHHhhc-CHHHHHHHHHHHHHHHHhcchhHHH----------HHHHHHH-HHHhc-h--hhHHHHHH
Q 019552 157 AISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHLKCDHGVWLT----------FANILTL-GAYTI-P--GIGGMIAQ 221 (339)
Q Consensus 157 G~~g~~~~IvI~~gLl~~L-~~dEL~aVLaHElgHi~~~H~~~~~----------~~~~l~~-~~~~~-p--~~~~~i~~ 221 (339)
+| ++|+|++||+-.. ||.||++|||||+||+..+|..+.. +..++.. ++... + +...+...
T Consensus 110 --~G--g~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~ 185 (484)
T COG4783 110 --PG--GYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGA 185 (484)
T ss_pred --CC--ceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHH
Confidence 23 4799999998776 8999999999999999999997543 2212211 11111 1 11111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhh
Q 019552 222 --SLEEQLFRWLRAAELTCDRAALLVS----QDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIR 295 (339)
Q Consensus 222 --~l~~~l~~~sR~~E~~AD~~A~~~~----~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~ 295 (339)
....-.+.|||..|.+||+.|+... +||.+|.+++.|++.... ..+..
T Consensus 186 ~a~~~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff~rl~~~~~---------------------~~~~~----- 239 (484)
T COG4783 186 LAGAAQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFFERLADQLR---------------------YGGQP----- 239 (484)
T ss_pred HHHhhhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHh---------------------cCCCC-----
Confidence 1112246799999999999998754 799999999999985321 01112
Q ss_pred ccccccCCCCChHHHHHHHHhhhhhhc
Q 019552 296 NAQTRQLSHPLLVLRAREIDAWSRSQD 322 (339)
Q Consensus 296 ~~~~~~~THP~~~~Ri~~L~~~~~s~~ 322 (339)
..++.|||.+.+||.++++.+++..
T Consensus 240 --p~yl~THPlp~~RIa~lr~ra~q~p 264 (484)
T COG4783 240 --PEYLLTHPLPEERIADLRNRAEQSP 264 (484)
T ss_pred --ChHHhcCCCchhHHHHHHHHHHhCC
Confidence 2458899999999999998888644
No 13
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=179.82 Aligned_cols=179 Identities=25% Similarity=0.235 Sum_probs=133.1
Q ss_pred ccCCCChHHHHHHHHHHHHHcCCCCCcEEEEe----CCCCcEEEeeccCCccEEEECHHHH--hh-cCHHHHHHHHHHHH
Q 019552 116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLV--EL-LTRKELQAVLAHEL 188 (339)
Q Consensus 116 ~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~----~~~~NAfa~G~~g~~~~IvI~~gLl--~~-L~~dEL~aVLaHEl 188 (339)
+.+|.++.++++.++++++..|+|..+++|++ +...||+-+|+ +...+|+|.+.|+ +. +|+||+.||+|||+
T Consensus 210 K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~-~~~KRIvIyDtLl~~~~~~~~eel~AVl~HEL 288 (428)
T KOG2719|consen 210 KFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGL-CKNKRIVIYDTLLLEEEHLNNEELVAVLAHEL 288 (428)
T ss_pred CCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeec-cccceEEEehhhhhhhhccccHHHHHHHHHHh
Confidence 34667777999999999999999999999987 45799999998 4567899999999 44 48999999999999
Q ss_pred HHHHhcchhHHHHHHHHHHH-------HH-----------h---chh-hHHH-HHHHH--------HHHHHHHHHHHHHH
Q 019552 189 GHLKCDHGVWLTFANILTLG-------AY-----------T---IPG-IGGM-IAQSL--------EEQLFRWLRAAELT 237 (339)
Q Consensus 189 gHi~~~H~~~~~~~~~l~~~-------~~-----------~---~p~-~~~~-i~~~l--------~~~l~~~sR~~E~~ 237 (339)
||++++|..++++...+..+ .. + .|. +|.+ +..++ ...+.-.||..||.
T Consensus 289 GHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyq 368 (428)
T KOG2719|consen 289 GHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQ 368 (428)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999998765322211 00 0 122 2222 11111 11234568999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHhh
Q 019552 238 CDRAALLVSQDPKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAW 317 (339)
Q Consensus 238 AD~~A~~~~~~p~~~~~aL~kla~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~~ 317 (339)
||++|.++..+ ..+.+||.|+..++-.. +..++.| ..|..|||...+|+++++..
T Consensus 369 AD~fA~klGYg-~~L~~AL~KL~~dnlsf--------------------~~~D~LY----s~~~~~HPtvleRl~~l~~~ 423 (428)
T KOG2719|consen 369 ADAFAKKLGYG-KDLRQALIKLFVDNLSF--------------------PVSDPLY----SAWHHLHPTVLERLDALDYL 423 (428)
T ss_pred HHHHHHHcCCc-hhHHHHHHHHhhhhcCC--------------------CCCcHHH----HHHHhcCchHHHHHHHHHHH
Confidence 99999997655 88999999999766332 1233444 46899999999999999876
Q ss_pred hhh
Q 019552 318 SRS 320 (339)
Q Consensus 318 ~~s 320 (339)
.+.
T Consensus 424 ~~k 426 (428)
T KOG2719|consen 424 SEK 426 (428)
T ss_pred Hhh
Confidence 543
No 14
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=4.7e-18 Score=158.76 Aligned_cols=177 Identities=21% Similarity=0.248 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHcC----CC--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc-CHHHHHHHHHHHHHHHHhcch
Q 019552 124 ELHQLMTEAAEILN----LE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 124 ~L~~~l~~l~~~lg----i~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L-~~dEL~aVLaHElgHi~~~H~ 196 (339)
.+.+.+.++.+..+ +. .-++.|+++|.+|||+++ | +.|+|.+|+|..+ ++|++++|||||+||...+|.
T Consensus 216 ~V~~vlk~iIea~~~~~slsgIkWeihVVndPipNAFvLP--g--GKvfVFtgiLn~ck~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 216 AVKEVLKHIIEANKDVPSLSGIKWEIHVVNDPIPNAFVLP--G--GKVFVFTGILNSCKDDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred HHHHHHHHHHHHhccCCcccCceeEEEEecCCCCceeecc--C--CeEEEEechhhcccChHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555 33 248999999999999984 3 3599999999988 799999999999999999999
Q ss_pred hHHH----HHHHHHHHHHhchhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHhcCCCCC
Q 019552 197 VWLT----FANILTLGAYTIPGIGGMIAQSLEEQL--FRWLRAAELTCDRAALLVS----QDPKVVISVLMKLAGGCPSL 266 (339)
Q Consensus 197 ~~~~----~~~~l~~~~~~~p~~~~~i~~~l~~~l--~~~sR~~E~~AD~~A~~~~----~~p~~~~~aL~kla~~~~~~ 266 (339)
.-.. +..++..+.+.+.+- ..+...+...+ +.+||++|.+||-+|+.++ .||++.....+++......+
T Consensus 292 AEki~k~~~~siLgLvlyt~~~a-~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvwErM~~~egqm 370 (424)
T KOG2661|consen 292 AEKIGKVHLLSILGLVLYTMIWA-ICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVWERMEFVEGQM 370 (424)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhh-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHHHHHHHhhhhc
Confidence 7543 223333322222110 01111222222 4589999999999987754 57777777666665432110
Q ss_pred cccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHhhhhhhchHHHHHhhc
Q 019552 267 ADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQDYASLLKRAM 331 (339)
Q Consensus 267 ~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~~~~s~~y~~~~~~~~ 331 (339)
+... ..+|++|||+...|++.+.+|..+..-.+-...|+
T Consensus 371 -------------------g~~~-------~~eflSTHPSskkRie~~~~lLpqAnvirE~sdcy 409 (424)
T KOG2661|consen 371 -------------------GQPK-------MPEFLSTHPSSKKRIEYLDRLLPQANVIREMSDCY 409 (424)
T ss_pred -------------------CCCC-------CchhhhcCCCccchhHHHHHhchHHHHHHHHhcCC
Confidence 1111 13578999999999999999988765444334443
No 15
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.77 E-value=7.4e-18 Score=158.11 Aligned_cols=194 Identities=21% Similarity=0.258 Sum_probs=131.9
Q ss_pred CCChHHHHHHHHHHHHHcCCC--C----CcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc-CHHHHHHHHHHHHHHH
Q 019552 119 KNQLPELHQLMTEAAEILNLE--A----PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHL 191 (339)
Q Consensus 119 ~~~~p~L~~~l~~l~~~lgi~--~----p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L-~~dEL~aVLaHElgHi 191 (339)
+-.+|.+.+++.++..++-.. . .++-|+++|.+|||++ +| ++++|+.||+..+ +..|+++||+||+||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnSP~INAFAL--PG--GYlYitRGLlAland~sEvAAVl~HEmgHV 135 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNSPNINAFAL--PG--GYLYITRGLLALANDSSEVAAVLAHEMGHV 135 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecCCCcccccc--CC--ceEEEehhHHHHcCCHHHHHHHHHhhhhhe
Confidence 446788889988888776532 2 3677899999999998 34 5999999999988 5789999999999999
Q ss_pred HhcchhHHHHH----HHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHh
Q 019552 192 KCDHGVWLTFA----NILTLGAYTIPG---IGGMIAQSLEEQLFRWLRAAELTCDRAALLVS----QDPKVVISVLMKLA 260 (339)
Q Consensus 192 ~~~H~~~~~~~----~~l~~~~~~~p~---~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~~----~~p~~~~~aL~kla 260 (339)
..+|.....-. .++.....-..+ .|......-...+..|||.+|++||.+|++.. +||.++++.|..|+
T Consensus 136 tAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGklrla~fsRnqELqAD~iG~~~lgeAGYDP~A~~rfl~sm~ 215 (479)
T COG4784 136 TANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARFLQSMA 215 (479)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhHHHhhhccchhhhhhhhhHHHHHhcCCChHHHHHHHHHHH
Confidence 99999865421 122111110000 11110000011235699999999999999865 69999999999998
Q ss_pred cCCCCCcccccHHHHHHHHhhccccCCCCCchhhhccccccCCCCChHHHHHHHHhhhhhh-----------chHHHHHh
Q 019552 261 GGCPSLADQLNVDAFLEQARSYDKASSSPVGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQ-----------DYASLLKR 329 (339)
Q Consensus 261 ~~~~~~~~~~~~~~fl~qa~~~~~~~~~~~~~~~~~~~~~~~THP~~~~Ri~~L~~~~~s~-----------~y~~~~~~ 329 (339)
.+..- ...+...+ ....+++|||.+..||+...+.+++- .|-.=+++
T Consensus 216 ay~~F-----------------~s~~g~ad-----qsldfl~sHPntpqRiqla~~hARq~g~~gvg~~gRd~fL~gidg 273 (479)
T COG4784 216 AYTDF-----------------RSVSGAAD-----QSLDFLASHPNTPQRIQLARRHARQFGAPGVGTRGRDSFLAGIDG 273 (479)
T ss_pred hhhhh-----------------cccCcchh-----hhcchhhcCCCChHHHHHHHHHHHhhCCCCCCcccHHHHHhcccC
Confidence 76531 11010001 01256899999999999998887651 13444556
Q ss_pred hcccCCCCC
Q 019552 330 AMKMNTVHT 338 (339)
Q Consensus 330 ~~~~~~~~~ 338 (339)
..-.||+|+
T Consensus 274 ~lyGDSp~e 282 (479)
T COG4784 274 LLYGDSPQE 282 (479)
T ss_pred cccCCCccc
Confidence 666777764
No 16
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.73 E-value=1.2e-16 Score=152.29 Aligned_cols=137 Identities=28% Similarity=0.392 Sum_probs=115.0
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchh
Q 019552 118 SKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (339)
Q Consensus 118 ~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~ 197 (339)
.+..++++.+.+++++++.|++.+...+..+....++++|+ .+|.|+++.++.+.++++|++.|++||++|++++|.+
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~~i~sP~~~G~--~~p~I~lP~~~~~~~~~~el~~il~HEl~Hikr~D~~ 213 (299)
T PF05569_consen 136 RPVEDEELQALLEECKEELGIKRPIRIRVSSGISSPFVFGF--LRPVIVLPESLLEDLSEEELRAILLHELAHIKRRDLL 213 (299)
T ss_pred cccCcHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCeeecC--cceEEEecCccccccCHHHHHHHHHHHHHHHHCCChH
Confidence 44566789999999999999885433344455668899997 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhcCCC
Q 019552 198 WLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLV--SQDPKVVISVLMKLAGGCP 264 (339)
Q Consensus 198 ~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~--~~~p~~~~~aL~kla~~~~ 264 (339)
++.+..++..+.||+|.++.+. ..+.+.+|+.||+.++.. ..+...++++|.+++....
T Consensus 214 ~~~l~~l~~~l~WfnP~~~~~~--------~~~~~~~E~~cD~~vl~~l~~~~~~~Y~~~Ll~~~~~~~ 274 (299)
T PF05569_consen 214 WKLLAELLCALHWFNPLVWLLR--------RRIRRDRELACDEAVLRNLGKEERKAYAETLLKVAKRSQ 274 (299)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHhhhHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999876422 235577999999999998 4677899999999987653
No 17
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.51 E-value=4.7e-13 Score=125.66 Aligned_cols=164 Identities=19% Similarity=0.194 Sum_probs=117.8
Q ss_pred HccchhHHHHHHHHHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEE
Q 019552 86 AIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 165 (339)
Q Consensus 86 ~ipg~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~~~p~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~I 165 (339)
.+--+.|++|.+++.++....+.........--+...-+....++++.++...+.+.+.. .++..+...+|. .+|.|
T Consensus 99 ~i~l~lWi~g~li~~~~~~~~~~~~~~r~~~sl~~~e~d~~~~~~~~~~~~~~k~i~ir~-s~~i~~P~v~gl--~kp~I 175 (337)
T COG4219 99 NILLLLWIVGALIGLFYFIVARLARFVRKLGSLEPNEVDKRKIVTILKNHQYKKHILIRK-SKAIDGPMVFGL--VKPCI 175 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHhhhccCeeEee-cccCCCceeecc--CcceE
Confidence 333477888888887764444443332222222233446778888888888766654433 345567778886 67999
Q ss_pred EECHHHHhhcCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019552 166 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLV 245 (339)
Q Consensus 166 vI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~ 245 (339)
++++.+.+.++++|++.|++||++|+++||...+.+...+..+.|++|.+- +... ...-++|..||+.++..
T Consensus 176 vlP~d~~~r~~~ee~~yIilHEl~Hlk~gD~i~n~i~~~~~~l~WfNP~v~-l~~~-------~~~~D~E~aCDa~vL~~ 247 (337)
T COG4219 176 VLPADFVERLTDEELKYIILHELSHLKRGDAIINLIVVVLGVLFWFNPLVH-LGKR-------KIRIDQEIACDAAVLAR 247 (337)
T ss_pred EccHHHHhhcCHHhhhhhHhHHHhhhhcccHHHHHHHHHHhHHhhcChHHH-HHHH-------HHHhhHHHHhhHHHHhc
Confidence 999999999999999999999999999999999999999999999998653 2111 23356999999999875
Q ss_pred cC--ChHHHHHHHHHHh
Q 019552 246 SQ--DPKVVISVLMKLA 260 (339)
Q Consensus 246 ~~--~p~~~~~aL~kla 260 (339)
.. .-..++++++|+-
T Consensus 248 ~~~~err~YaEsil~~l 264 (337)
T COG4219 248 INPEERRTYAESILKLL 264 (337)
T ss_pred cChHHHHHHHHHHHHHH
Confidence 41 2345677777754
No 18
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.63 E-value=0.00066 Score=54.60 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=49.1
Q ss_pred ccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019552 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRA 241 (339)
Q Consensus 162 ~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~ 241 (339)
.++|+|+.. +++.+-.++++|||||+..+|....... .. . .......|++||.+
T Consensus 28 ~~~I~in~~----~~~~~~~f~laHELgH~~~~~~~~~~~~--------~~---~-----------~~~~~~~E~~An~f 81 (122)
T PF06114_consen 28 NPIIFINSN----LSPERQRFTLAHELGHILLHHGDETFNY--------YL---N-----------YFFNERQEREANAF 81 (122)
T ss_dssp TTEEEEESS----S-HHHHHHHHHHHHHHHHHHH-HHHHHH--------HH---H-----------H--THHHHHHHHHH
T ss_pred CCEEEECCC----CCHHHHHHHHHHHHHHHHhhhccccchh--------hc---c-----------ccchhhHHHHHHHH
Confidence 689999987 6889999999999999998777643300 00 0 01224579999999
Q ss_pred HHHhcCChHHHHHHHHHHh
Q 019552 242 ALLVSQDPKVVISVLMKLA 260 (339)
Q Consensus 242 A~~~~~~p~~~~~aL~kla 260 (339)
|..+.-..+.....+.+..
T Consensus 82 A~~lL~p~~~~~~~~~~~~ 100 (122)
T PF06114_consen 82 AAALLMPEEDFRDALEKYR 100 (122)
T ss_dssp HHHHHS-HHHHHHHHHHH-
T ss_pred HHHHhCCHHHHHHHHHHcC
Confidence 9988766666666555544
No 19
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.32 E-value=0.0017 Score=61.94 Aligned_cols=165 Identities=16% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeC----------CCCcEEEeeccCCccEEEECHHHHhhcC-------HHHHHHHHH
Q 019552 125 LHQLMTEAAEILNLE--APDLYVRQS----------PVPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLA 185 (339)
Q Consensus 125 L~~~l~~l~~~lgi~--~p~v~v~~~----------~~~NAfa~G~~g~~~~IvI~~gLl~~L~-------~dEL~aVLa 185 (339)
+.+...+..++.|.+ .|++.+..+ ...|||-++ ....|++...+++.|. +--..+|||
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpFYCp---~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlA 175 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPFYCP---ADQTIYLDLSFFDELQQRFGASGDFAQAYVLA 175 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCEeCC---CCCEEEechHHHHHHHHHhCCccHHHHHHHHH
Confidence 444445555566766 677777543 234667664 2458999988776552 334678999
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 019552 186 HELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKVVISVLMKLAGGCPS 265 (339)
Q Consensus 186 HElgHi~~~H~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~~~~p~~~~~aL~kla~~~~~ 265 (339)
||.||..++.. .++...-....... ...-..++|..|+.||.+|=...... ....
T Consensus 176 HEyGHHVQ~l~------Gil~~~~~~~~~~~-------~~~~~~~svr~ELQADC~AGvw~~~~-----------~~~~- 230 (292)
T PF04228_consen 176 HEYGHHVQNLL------GILDAVRQAQQGRS-------PAEANELSVRLELQADCFAGVWAGHA-----------AEDG- 230 (292)
T ss_pred HHHHHHHHHHh------hhHHHHHHHhhccC-------ccccchHHHHHHHHHHHHHHHHhhhc-----------cccC-
Confidence 99999875322 11110000000000 00112467899999999976544221 1011
Q ss_pred CcccccHHHHHHHHhhccccCCCC--CchhhhccccccCCCCChHHHHHHHHhhhhhh
Q 019552 266 LADQLNVDAFLEQARSYDKASSSP--VGWYIRNAQTRQLSHPLLVLRAREIDAWSRSQ 321 (339)
Q Consensus 266 ~~~~~~~~~fl~qa~~~~~~~~~~--~~~~~~~~~~~~~THP~~~~Ri~~L~~~~~s~ 321 (339)
..++-|+++-+..+...-+..... .+.. .---.||=...+|++-.++=.+++
T Consensus 231 ~l~~~di~~al~aa~aiGDD~iq~~~~g~v----~pds~tHGSs~qR~~Wf~~G~~~G 284 (292)
T PF04228_consen 231 SLTPGDIEEALNAASAIGDDRIQKRAGGRV----VPDSFTHGSSEQRVRWFQRGYQTG 284 (292)
T ss_pred CcCHHHHHHHHHHHHHhcChHhhhhcCCCC----CCCCcCcCCHHHHHHHHHHHhhcC
Confidence 122234444444443321100000 0000 001237999999998887765554
No 20
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=97.17 E-value=0.00094 Score=60.35 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019552 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (339)
Q Consensus 178 dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~~ 246 (339)
--+.+++.||++|+..+|.... .+ .++++.|.+||..|....
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~~------------~~---------------~~~~~eE~~AD~~A~~~i 140 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGDS------------SP---------------SQSIQEEKEADSYATEMI 140 (206)
T ss_pred HHHHHHHHHHHHHHHHcCcccc------------cc---------------chhHHHHHhhhHHHHHHH
Confidence 5678999999999999998754 11 245789999999998874
No 21
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=96.77 E-value=0.004 Score=55.73 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
.+.+.+...++.+|++.+.+.|.+...- .|-...++.|.++..|+. ++++-+.+|+.|||+|+++.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~i~ir~~ksr----WGsc~~~~~I~ln~~L~~-~P~~~idYVvvHEL~Hl~~~nH 180 (205)
T PF01863_consen 113 YLPERLKKYAKKLGLPPPKIKIRDMKSR----WGSCSSKGNITLNWRLVM-APPEVIDYVVVHELCHLRHPNH 180 (205)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeehhhc----cccCCCCCcEEeeccccc-CCccHHHHHHHHHHHHhccCCC
Confidence 5667788888999999889998765442 232234668999999886 7999999999999999986554
No 22
>PRK09672 phage exclusion protein Lit; Provisional
Probab=96.68 E-value=0.0043 Score=58.64 Aligned_cols=42 Identities=21% Similarity=0.085 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019552 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (339)
Q Consensus 178 dEL~aVLaHElgHi~~~H~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~~ 246 (339)
.-+++|+.||++|+..+|.... . ..++++.|.+||.+|....
T Consensus 163 ~A~a~i~~HEiaHv~~~h~~~~------------~---------------~e~s~~eE~eaDs~At~~i 204 (305)
T PRK09672 163 CALAWILLHEIAHVEFQHSSLE------------S---------------NEDSIQEEKEADSYATNWL 204 (305)
T ss_pred HHHHHHHHHHHHHHHhcccccc------------C---------------chHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998741 0 1366889999999998875
No 23
>PRK04351 hypothetical protein; Provisional
Probab=96.30 E-value=0.02 Score=49.28 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHH-cCCCCC-cEEEEeCC--CCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 122 LPELHQLMTEAAEI-LNLEAP-DLYVRQSP--VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 122 ~p~L~~~l~~l~~~-lgi~~p-~v~v~~~~--~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
+.+|.+++++++.. .+.+-| ++.+-..- ...++-+ ....|.++..+++..+++++..||+|||+|+.
T Consensus 3 ~~~l~~l~~~~s~~~F~~~f~~~v~~n~RlrttgG~~~l----~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 3 NQELQRLVEEISLEYFGKPFRHQAYFNKRLRTTGGRYLL----KDHHIEFNPKMLEEYGLEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeccchhhhheeec----CCCeEEeCHHHHhhccHHHHHhhHHHHHHHHH
Confidence 45889999998875 465533 44442221 1223322 34579999999999999999999999999974
No 24
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=95.91 E-value=0.037 Score=50.80 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhH
Q 019552 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 198 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~ 198 (339)
.+...++..++.+|.+...+.+-+....-+.+. ....|.++.-|.. ++++.+.+|++|||+|++..+.-.
T Consensus 124 ~l~~~~~~~~~~l~~~~~~~~ik~~k~~WGScs----~~~~i~~~~~l~~-~p~~~i~YVvvHELaHLke~nHs~ 193 (223)
T COG1451 124 ILEIRLKEYAKKLGVPPRAIKLKNMKRRWGSCS----KAGEIRFNWRLVM-APEEVIDYVVVHELAHLKEKNHSK 193 (223)
T ss_pred HHHHHHHHHHHHhCCCccceeeeeccceeeeec----CCCcEEeehhhhc-CCHHHHHHHHHHHHHHHhhhhccH
Confidence 344455556667777766666653322222222 2236777777654 799999999999999999776543
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=95.36 E-value=0.041 Score=47.03 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=43.8
Q ss_pred HHHHHHHHHH-HHcCCC--CCcEEEEeCCCCcEEEeec-cCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 124 ELHQLMTEAA-EILNLE--APDLYVRQSPVPNAYTLAI-SGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 124 ~L~~~l~~l~-~~lgi~--~p~v~v~~~~~~NAfa~G~-~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
+|.+.++++- +.++-+ .|.+.+-... ..+ .|. ......|.++..|++..+++++..||.|||+|+..
T Consensus 2 ~L~~~~~~~n~~~F~~~l~~~~i~w~~r~-~~~--~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 2 ELTQRLEDASLRVFGRKLPHPKVVWNKRL-RKT--GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAAL 72 (146)
T ss_pred hHHHHHHHHHHHHHCCCCCCCEEEEehhh-hhh--hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 4566666655 344433 4445443321 111 111 11256899999999988999999999999999996
No 26
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.33 E-value=0.1 Score=44.66 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=28.5
Q ss_pred EEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 164 FVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 164 ~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
.|.|+..+++..+++++..+|.|||+|+..
T Consensus 44 ~I~ls~~~~~~~~~~~~~~tL~HEm~H~~~ 73 (157)
T PF10263_consen 44 EIRLSPKLLDRNPEEELIDTLLHEMAHAAA 73 (157)
T ss_pred EEEECHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 799999999988899999999999999986
No 27
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=95.23 E-value=0.044 Score=52.05 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhH
Q 019552 148 SPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 198 (339)
Q Consensus 148 ~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~ 198 (339)
++....+++ +| ..|+++...+..++.+|+.+|++||+-|+..+|+.+
T Consensus 32 ~~~~~t~~t--Dg--~~l~~nP~~~~~l~~~~~~~~l~HevlH~~~~H~~r 78 (292)
T PF13203_consen 32 DDGIPTAAT--DG--RRLYYNPEFLESLSPEERVGLLLHEVLHCLLRHPWR 78 (292)
T ss_pred CCCCceeeE--cC--cEEEECcHHHhcCCHHHHHHHHHHHHHHHHccchhh
Confidence 444444444 34 389999999999999999999999999999999864
No 28
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=94.31 E-value=0.16 Score=45.50 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeCCCCcEEE------eeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 019552 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYT------LAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 195 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa------~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H 195 (339)
.+.+.+.++.+.+..+.-+|+|......|.+. .|..+....|.+.- +-...+.++|.+++|||+-|..+..
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~~~~~l~~~iaHE~hH~~r~~ 80 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDYSLEELPALIAHEYHHNCRYE 80 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcccHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777665456654432222111 11122334677765 4455688999999999999997544
No 29
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=93.95 E-value=0.33 Score=44.01 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=42.0
Q ss_pred EEeCCCCcEEEeeccCCccEEEECHHHHhhcC-----HHHHHHHHHHHHHHHHhcch
Q 019552 145 VRQSPVPNAYTLAISGKKPFVVVHTSLVELLT-----RKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 145 v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~-----~dEL~aVLaHElgHi~~~H~ 196 (339)
++++-.--|++.| ......|.++...++... .+|+.+||-||+.|+-+.++
T Consensus 57 ~~~~~~gVA~t~g-d~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 57 ILDDMDGVAYTSG-DDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred EEECCCeeEEEec-CCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 4666677788888 455679999999999875 35999999999999998765
No 30
>PRK04860 hypothetical protein; Provisional
Probab=93.19 E-value=0.31 Score=42.50 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 125 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 125 L~~~l~~l~~~lgi~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
+.+-++...+.++.+ .|.+..-.... .|-.+.. ...-|-++..+++.-++++|..||.||++|+..
T Consensus 9 ~~~~~~~a~~~f~~~f~~p~~~f~~R~r-taG~~~l--~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 9 LRECLAQANLYFKRTFPEPKVSYTQRGT-SAGTAWL--QSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEeecch-hhcchhH--hcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 344444444555655 45665533222 1333322 334699999999988999999999999999973
No 31
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=92.89 E-value=0.24 Score=37.97 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHcCCCCCcEEEEeC---------CCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019552 130 TEAAEILNLEAPDLYVRQS---------PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 130 ~~l~~~lgi~~p~v~v~~~---------~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~ 194 (339)
.++...+|.+...|.|-.+ ....||+.| ..|++..|-.+ .+..+=..+|+||++|+.+.
T Consensus 8 ~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G-----~~I~f~~g~~~-~~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 8 SRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVG-----NDIYFAPGKYN-PDSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC-----CEEEEcCCCcC-CCCCCcchhHhHHHHHHHhh
Confidence 3444567777666666433 346777775 25888766433 23345578999999999864
No 32
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=92.88 E-value=0.09 Score=47.91 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.0
Q ss_pred CCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019552 160 GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 160 g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~ 194 (339)
..+|.|+|+.. .+++.-++++||||||+..+
T Consensus 56 ~~~~~I~iN~n----~~~~r~rFtlAHELGH~llH 86 (213)
T COG2856 56 EEKPVIYINAN----NSLERKRFTLAHELGHALLH 86 (213)
T ss_pred ccCceEEEeCC----CCHHHHHHHHHHHHhHHHhc
Confidence 35689999876 38899999999999999863
No 33
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=92.08 E-value=0.4 Score=41.14 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHcCCC--CCcEEEEeCC--CCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 122 LPELHQLMTEAAEILNLE--APDLYVRQSP--VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 122 ~p~L~~~l~~l~~~lgi~--~p~v~v~~~~--~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
..+|.+.++++.....-+ .|+++.-.-. .-.||-. +.-|-++.-+++...++.+..|+.|||+|+.
T Consensus 4 ~~~L~~~~~~as~~~~r~~~~p~~~~n~Rg~taG~ayL~-----~~~I~lNP~ll~en~~~f~~~vV~HELaHl~ 73 (156)
T COG3091 4 NRKLQQCVEQASLKFFRKFFRPKASYNQRGRTAGGAYLL-----KSEIRLNPKLLEENGEDFIEQVVPHELAHLH 73 (156)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcceehhhhhhhcchhhcc-----ccccccCHHHHHHccHHHHHHHHHHHHHHHH
Confidence 357888888887776643 5666653321 2223321 2269999999999999999999999999986
No 34
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=89.40 E-value=7.9 Score=35.51 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 126 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 126 ~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
.+..+.+.++.|+...+|..++..--+=| ++.++.|-++.+-.+.-+ =--.+|-|||+||-.+...
T Consensus 40 ae~Ar~iL~~~gl~~V~Ve~~~G~LtDHY----dP~~k~vrLS~~vy~~~S-iaAvaVAAHEvGHAiQ~a~ 105 (222)
T PF04298_consen 40 AEVARHILDRNGLSDVRVERVPGELTDHY----DPRNKVVRLSEDVYNGRS-IAAVAVAAHEVGHAIQHAE 105 (222)
T ss_pred HHHHHHHHHHCCCCCeeEEEeCCCCCCCc----CCCCCEEEeCCccCCCCC-HHHHHHHHHHHhHHHhccc
Confidence 34556666778887555555543111112 345667888887655433 2345799999999998664
No 35
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=88.18 E-value=0.46 Score=43.14 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=25.9
Q ss_pred cEEEECHHHHhhcCHHHHHHHHHHHHHHHH-hcchhHH
Q 019552 163 PFVVVHTSLVELLTRKELQAVLAHELGHLK-CDHGVWL 199 (339)
Q Consensus 163 ~~IvI~~gLl~~L~~dEL~aVLaHElgHi~-~~H~~~~ 199 (339)
+.|.| .+ ++..+.+..+.||+|||||.. -||.-|.
T Consensus 118 ~~I~I-~~-~~~~~~~~~~hvi~HEiGH~IGfRHTD~~ 153 (211)
T PF12388_consen 118 KFIQI-YG-LSNYSVNVIEHVITHEIGHCIGFRHTDYF 153 (211)
T ss_pred ceEEE-Ee-cCCCchhHHHHHHHHHhhhhccccccCcC
Confidence 36777 33 355678889999999999987 5676543
No 36
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=0.17 Score=51.81 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=33.5
Q ss_pred EeCCCCcEEEeeccCCccEEEECHHHHhh--cC--------HHHHHHHHHHHHHHHHh
Q 019552 146 RQSPVPNAYTLAISGKKPFVVVHTSLVEL--LT--------RKELQAVLAHELGHLKC 193 (339)
Q Consensus 146 ~~~~~~NAfa~G~~g~~~~IvI~~gLl~~--L~--------~dEL~aVLaHElgHi~~ 193 (339)
+.-...|||.- +.+..||++.++|+. .+ -.-|-+|||||+||---
T Consensus 446 M~pq~VNAYYn---p~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFD 500 (654)
T COG3590 446 MPPQTVNAYYN---PQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFD 500 (654)
T ss_pred CCHHHhhhhcC---CCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhccccc
Confidence 34446799874 356789999999984 23 23599999999999863
No 37
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=84.89 E-value=3.1 Score=34.79 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=23.2
Q ss_pred CcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 151 PNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 151 ~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
.-|.+.|. ++.+|.+...--+..+. ++ |.+||+||+.
T Consensus 53 sya~~~g~--G~G~I~l~~~~~qgy~~--~R-IaaHE~GHiL 89 (132)
T PF02031_consen 53 SYASTDGL--GSGYIFLDYQQNQGYNS--TR-IAAHELGHIL 89 (132)
T ss_dssp -EEEE-SS--S-EEEEEEHHHHHHS-H--HH-HHHHHHHHHH
T ss_pred cccccCCC--CcEEEEechHHhhCCcc--ce-eeeehhcccc
Confidence 34555553 56799998765444443 33 9999999998
No 38
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=83.31 E-value=4.1 Score=38.39 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCC--CCcEEEEeC----------CCCcEEEeeccCCccEEEECHHHHhhcC-------HHHHHHHHHHH
Q 019552 127 QLMTEAAEILNLE--APDLYVRQS----------PVPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLAHE 187 (339)
Q Consensus 127 ~~l~~l~~~lgi~--~p~v~v~~~----------~~~NAfa~G~~g~~~~IvI~~gLl~~L~-------~dEL~aVLaHE 187 (339)
+....+.++.+.. .|++.+... +....|.++ ....+++...+.+.|+ +=.-++|+|||
T Consensus 98 d~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP---~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHE 174 (295)
T COG2321 98 DTWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCP---ADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHE 174 (295)
T ss_pred HHHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecC---CCceEEEehhHHHHHHHHhcCCccHHHHHHHHhh
Confidence 3444444444433 677776532 233345553 2457999999998774 33578999999
Q ss_pred HHHHHh
Q 019552 188 LGHLKC 193 (339)
Q Consensus 188 lgHi~~ 193 (339)
.||..+
T Consensus 175 VGHHVQ 180 (295)
T COG2321 175 VGHHVQ 180 (295)
T ss_pred hhHHHH
Confidence 999874
No 39
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=82.06 E-value=4.8 Score=35.89 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.1
Q ss_pred cCHHHHHHHHHHHHHHHHhcch
Q 019552 175 LTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 175 L~~dEL~aVLaHElgHi~~~H~ 196 (339)
++-+++..|+.|||+|+.++..
T Consensus 77 l~~~~i~~t~lHELaH~~~~~H 98 (186)
T PF08325_consen 77 LPYETILGTMLHELAHNVHGPH 98 (186)
T ss_pred eeHHHHHHHHHHHHHhcccCCc
Confidence 5789999999999999996644
No 40
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=80.15 E-value=5.8 Score=36.37 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=51.3
Q ss_pred HHcCCCCCc-EEEEeCCCCcEEEeeccCCccEEEECHHHHhhc---------CH--------HHHHHHHHHHHHHHHhcc
Q 019552 134 EILNLEAPD-LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL---------TR--------KELQAVLAHELGHLKCDH 195 (339)
Q Consensus 134 ~~lgi~~p~-v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L---------~~--------dEL~aVLaHElgHi~~~H 195 (339)
..+.+|.|- |...+....|||-- +..+.|.|.-.+++.. ++ +-+.+++-||+||..-
T Consensus 31 ~~f~LP~~l~i~~~~CGe~nA~yd---Pe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAlI-- 105 (220)
T PF14247_consen 31 DYFPLPRDLTIRFAECGEDNAFYD---PENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHALI-- 105 (220)
T ss_pred hcCCCCCCeEEEEeecCCCCCccC---CCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHHH--
Confidence 334455442 22334678999974 4667899998887632 11 3477899999999751
Q ss_pred hhHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019552 196 GVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (339)
Q Consensus 196 ~~~~~~~~~l~~~~~~~p~~~~~i~~~l~~~l~~~sR~~E~~AD~~A~~~~ 246 (339)
-..-+|.+|. .|=.||.+|+.++
T Consensus 106 ------------~~~~lPv~Gr----------------EEDaaD~lAa~~l 128 (220)
T PF14247_consen 106 ------------DDLDLPVLGR----------------EEDAADQLAALLL 128 (220)
T ss_pred ------------HHhcCCcccc----------------hhhHHHHHHHHHH
Confidence 1123465552 5888998887765
No 41
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=79.60 E-value=6.6 Score=32.09 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCC---CCcEEEEeCCC--CcEEE--eecc-------CCcc--EEEECHHHHhhcCHHHHHHHHHH
Q 019552 123 PELHQLMTEAAEILNLE---APDLYVRQSPV--PNAYT--LAIS-------GKKP--FVVVHTSLVELLTRKELQAVLAH 186 (339)
Q Consensus 123 p~L~~~l~~l~~~lgi~---~p~v~v~~~~~--~NAfa--~G~~-------g~~~--~IvI~~gLl~~L~~dEL~aVLaH 186 (339)
+...+.++.+.-++|+. ..+++++-++. .-|++ +|++ |-+| .|-+-+.=++.|+-+|---|+.|
T Consensus 7 ~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rLs~~ekvKviiH 86 (133)
T COG4900 7 ADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRLSCAEKVKVIIH 86 (133)
T ss_pred ccHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCCChHHHHHHHHH
Confidence 45567777777788876 45777766543 22322 2221 1223 34445555677888898899999
Q ss_pred HHHHHHh
Q 019552 187 ELGHLKC 193 (339)
Q Consensus 187 ElgHi~~ 193 (339)
|+.||-.
T Consensus 87 EllHIP~ 93 (133)
T COG4900 87 ELLHIPA 93 (133)
T ss_pred HHhcCcc
Confidence 9999973
No 42
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=79.28 E-value=2.1 Score=44.69 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=30.8
Q ss_pred EeCCCCcEEEeeccCCccEEEEC-HHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019552 146 RQSPVPNAYTLAISGKKPFVVVH-TSLVELLTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 146 ~~~~~~NAfa~G~~g~~~~IvI~-~gLl~~L~~dEL~aVLaHElgHi~~~ 194 (339)
.+.....||+.|..+..|+|.++ +| +.++ -..|+||+||-.|.
T Consensus 349 r~gK~~Ga~~~~~~~~~p~il~N~~~-----~~~d-v~TLaHElGHa~H~ 392 (591)
T TIGR00181 349 NKGKRSGAYSIGGYKVKPYILMNWDG-----TLNS-VFTLAHELGHSMHS 392 (591)
T ss_pred CCCCCCCcccCCCCCCCCeEEEecCC-----Ccch-HHHHHHHhhhHHHH
Confidence 34556789999987778888775 22 2233 35799999999843
No 43
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=77.96 E-value=1.9 Score=44.79 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCC------------CcEEEEeCCCCcEEEeeccC-CccEEEEC-HHHHhhcCHHHHHHHHHHHHH
Q 019552 124 ELHQLMTEAAEILNLEA------------PDLYVRQSPVPNAYTLAISG-KKPFVVVH-TSLVELLTRKELQAVLAHELG 189 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~~------------p~v~v~~~~~~NAfa~G~~g-~~~~IvI~-~gLl~~L~~dEL~aVLaHElg 189 (339)
++.+.+.++...++... -+++-.+...+.||+.++++ ..|+|.++ +| +.+++ .+|+||+|
T Consensus 273 ~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~~-----t~~dv-~TL~HElG 346 (549)
T TIGR02289 273 FLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFNG-----TSGDI-DVLTHEAG 346 (549)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCCC-----ChhHH-HHHHHHhh
Confidence 56666666666555321 12222345568899998654 56888765 23 34444 46899999
Q ss_pred HHHhc
Q 019552 190 HLKCD 194 (339)
Q Consensus 190 Hi~~~ 194 (339)
|..|.
T Consensus 347 Ha~H~ 351 (549)
T TIGR02289 347 HAFHV 351 (549)
T ss_pred HHHHH
Confidence 99854
No 44
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=77.82 E-value=2.7 Score=33.48 Aligned_cols=31 Identities=32% Similarity=0.204 Sum_probs=22.0
Q ss_pred cEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 163 ~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
+.|++.. ..-+++.+..||+||++|....+.
T Consensus 11 ~~i~~~~---~~~~~~~~~~~l~HE~~H~~~~~~ 41 (128)
T PF13485_consen 11 NRIVVYF---QGSDEDWLDRVLAHELAHQWFGNY 41 (128)
T ss_pred CEEEEec---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555433 335778889999999999985444
No 45
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=77.15 E-value=19 Score=32.40 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchhH
Q 019552 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 198 (339)
Q Consensus 127 ~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~~ 198 (339)
+..+.+....|+...++-.++..-.. -.++.++.+-++..-...-+- .-.+|-|||.||-.+.+.-+
T Consensus 44 evAr~iLd~nGl~dV~Ve~v~G~LTD----HYDP~~kvvrLSe~~y~g~Si-a~~aVAAHEVGHAiQd~~~Y 110 (226)
T COG2738 44 EVARMILDENGLYDVPVEEVPGTLTD----HYDPRRKVVRLSEANYYGPSI-AAIAVAAHEVGHAIQDQEDY 110 (226)
T ss_pred HHHHHHHhhcCCccceeeeecCCccc----ccChhhheeeccccccCCccH-HHHHHHHHHhhHHHhhhccc
Confidence 44455556678764334443321111 114456677777765554332 34689999999998776544
No 46
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=75.56 E-value=3.6 Score=43.29 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=33.8
Q ss_pred CcEEEEeCCCCcEEEeeccC-CccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019552 141 PDLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 141 p~v~v~~~~~~NAfa~G~~g-~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~ 194 (339)
.+++--+...+.||+.|... ..|+|.++=. . +.+. -.+|+||+||-.|.
T Consensus 345 iD~~~~~gKrsGaYs~~~~~~~~p~IlmN~~--g--t~~d-V~TLaHElGHs~Hs 394 (598)
T COG1164 345 IDVYPRKGKRSGAYSIGFYKGDHPFILMNYD--G--TLRD-VFTLAHELGHSVHS 394 (598)
T ss_pred eeccCCCCCCCCcccCCCCCCCCCeEEEeCC--C--chhH-HHHHHHHccHHHHH
Confidence 34555556789999998766 7888877521 1 2333 46899999999853
No 47
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=75.42 E-value=2 Score=38.31 Aligned_cols=42 Identities=31% Similarity=0.360 Sum_probs=27.8
Q ss_pred cEEEeeccCCccEEEECHHHHhh----------cCHHHHHHHHHHHHHHHHhcch
Q 019552 152 NAYTLAISGKKPFVVVHTSLVEL----------LTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 152 NAfa~G~~g~~~~IvI~~gLl~~----------L~~dEL~aVLaHElgHi~~~H~ 196 (339)
|||-.. ....|+|+.++++. ++-.-|-+||||||.|.--.+.
T Consensus 1 na~Y~~---~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 1 NAYYSP---RFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp --EEET---TTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred CCCCCc---ccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555542 34578888888763 1234688999999999885544
No 48
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=74.08 E-value=2.1 Score=36.53 Aligned_cols=16 Identities=50% Similarity=0.713 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019552 177 RKELQAVLAHELGHLK 192 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~ 192 (339)
..++..|+.||+||..
T Consensus 101 ~~~~~~~~~HEiGHaL 116 (156)
T cd04279 101 AENLQAIALHELGHAL 116 (156)
T ss_pred chHHHHHHHHHhhhhh
Confidence 5689999999999998
No 49
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=73.69 E-value=2.2 Score=35.84 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHH-hcch
Q 019552 176 TRKELQAVLAHELGHLK-CDHG 196 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~-~~H~ 196 (339)
+..++..|+.||+||.. .+|.
T Consensus 101 ~~~~~~~v~~HEiGHaLGL~H~ 122 (154)
T PF00413_consen 101 SGNDLQSVAIHEIGHALGLDHS 122 (154)
T ss_dssp SSEEHHHHHHHHHHHHTTBESS
T ss_pred hhhhhhhhhhhccccccCcCcC
Confidence 44579999999999996 3443
No 50
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=71.89 E-value=2.6 Score=39.07 Aligned_cols=18 Identities=50% Similarity=0.495 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 019552 176 TRKELQAVLAHELGHLKC 193 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~~ 193 (339)
.+...+.++||||||--.
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 345688999999999873
No 51
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=71.38 E-value=3.3 Score=43.29 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=29.6
Q ss_pred EEEEeCCCCcEEEeeccC-CccEEEEC-HHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 143 LYVRQSPVPNAYTLAISG-KKPFVVVH-TSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 143 v~v~~~~~~NAfa~G~~g-~~~~IvI~-~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
++-.+.....||+.|+++ ..|+|+++ ++ +-+++ ..|+||+||..|
T Consensus 342 ~~~r~gK~~Ga~~~~~~~~~~p~i~~N~~~-----~~~~v-~TL~HE~GHa~H 388 (587)
T TIGR02290 342 AEPRPGKRGGAFCTGFPPSKEPRVLMNYDG-----SRRDV-STLAHELGHAYH 388 (587)
T ss_pred cCCCCCCCCCcccCCCCCCCCCEEEEecCC-----CchhH-HHHHHHhhHHHH
Confidence 333445578899988655 34877775 22 23333 468999999995
No 52
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=71.24 E-value=2.6 Score=35.95 Aligned_cols=31 Identities=19% Similarity=0.256 Sum_probs=20.7
Q ss_pred ccEEEECHHHHhh----cCHHHHHHHHHHHHHHHH
Q 019552 162 KPFVVVHTSLVEL----LTRKELQAVLAHELGHLK 192 (339)
Q Consensus 162 ~~~IvI~~gLl~~----L~~dEL~aVLaHElgHi~ 192 (339)
+..|.+....+.. .+.+++.+|+.|||||..
T Consensus 72 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaL 106 (165)
T cd04268 72 TGEILLARVYLYSSFVEYSGARLRNTAEHELGHAL 106 (165)
T ss_pred CccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555443321 244689999999999987
No 53
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=70.70 E-value=6.3 Score=34.78 Aligned_cols=66 Identities=20% Similarity=0.232 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHcCCC-CCc--EEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 122 LPELHQLMTEAAEILNLE-APD--LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 122 ~p~L~~~l~~l~~~lgi~-~p~--v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
.|.+.-+++.+ +++|-+ .++ +....-+. + .+-|+.+..+-|+|=..-+ -+.+++.-+|+|||-|..
T Consensus 15 sp~v~fl~~~~-~~~gc~~~~~~~i~c~~C~~-~-~~Ggf~p~~~~I~lC~N~~--~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 15 SPTVRFLMEAL-KKLGCPPVPPRHIKCEPCDS-S-VSGGFDPSKKGIVLCQNRI--RSQGHLEDTLTHELIHAY 83 (173)
T ss_pred CcHHHHHHHHH-HHcCCCCCCCCCeEEEECcC-C-CcCCccCCCCCEEEeeCCC--CCHHHHHHHHHHHHHHHH
Confidence 45555555554 456755 433 22222111 1 2334433234466544432 389999999999999998
No 54
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.55 E-value=7.9 Score=37.32 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=31.9
Q ss_pred cEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcchh
Q 019552 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (339)
Q Consensus 163 ~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~~ 197 (339)
-.++.+...+-.++.+++.|.|-||+-|+...|..
T Consensus 52 ~~~y~NPei~~~~p~~~~~aLl~HEV~Hi~l~Hi~ 86 (396)
T COG3864 52 FTMYFNPEIFLNCPISEMKALLKHEVYHIMLNHIK 86 (396)
T ss_pred eEEEeCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999974
No 55
>PF14891 Peptidase_M91: Effector protein
Probab=67.36 E-value=17 Score=31.72 Aligned_cols=22 Identities=32% Similarity=0.093 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHH
Q 019552 177 RKELQAVLAHELGHLKCDHGVWLT 200 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~~~H~~~~~ 200 (339)
+..=..+|+|||+|.. |.+..+
T Consensus 100 ~~~p~v~L~HEL~HA~--~~~~Gt 121 (174)
T PF14891_consen 100 PRPPFVVLYHELIHAY--DYMNGT 121 (174)
T ss_pred hHHHHHHHHHHHHHHH--HHHCCC
Confidence 4456789999999998 555433
No 56
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=65.87 E-value=3.2 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHH
Q 019552 176 TRKELQAVLAHELGHLK 192 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~ 192 (339)
+...-.-|+|||+||..
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 46778899999999987
No 57
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=64.88 E-value=8 Score=42.52 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHh-------hcCHHHHHHHHHHHHHHHHhcc
Q 019552 125 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKCDH 195 (339)
Q Consensus 125 L~~~l~~l~~~lgi~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~-------~L~~dEL~aVLaHElgHi~~~H 195 (339)
+.+.++-..+..|.+ .+++-++-.+..|.-+ + .+.+.+++.+..+- .-+...+..|+|||++|-=.|+
T Consensus 222 ~~~~L~~~E~~fG~pYPl~k~diVavpdf~~Ga--M-EN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 222 LKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGA--M-ENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHhCCCCChhhccEEecCCCCCcc--c-cccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444445567865 3444454444433322 2 23334444444331 1123357899999999988776
Q ss_pred h
Q 019552 196 G 196 (339)
Q Consensus 196 ~ 196 (339)
-
T Consensus 299 l 299 (863)
T TIGR02414 299 R 299 (863)
T ss_pred e
Confidence 4
No 58
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=63.95 E-value=3.7 Score=35.30 Aligned_cols=42 Identities=21% Similarity=0.103 Sum_probs=21.5
Q ss_pred eCCCCcEEEeeccCCccEEEECHHHHhhcCHH-HHHHHHHHHHHHHHh
Q 019552 147 QSPVPNAYTLAISGKKPFVVVHTSLVELLTRK-ELQAVLAHELGHLKC 193 (339)
Q Consensus 147 ~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~d-EL~aVLaHElgHi~~ 193 (339)
.....|||.-| . .++...|--..+.+= .=.=|+||||+|-.-
T Consensus 106 g~~~~NAfW~g---~--~m~yGdG~~~~f~~~~~~lDVvaHEltHGVt 148 (150)
T PF01447_consen 106 GKNYNNAFWNG---S--QMVYGDGDGQIFKPFASSLDVVAHELTHGVT 148 (150)
T ss_dssp SSSTT-EEE-S---S--SEEEE---SSSBS-GGG-HHHHHHHHHHHHH
T ss_pred CCCccCccccC---C--EEEEECCCCcccccCccccceeeeccccccc
Confidence 45678999753 2 477776643222211 112399999999653
No 59
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=63.80 E-value=5 Score=35.42 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019552 177 RKELQAVLAHELGHLK 192 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~ 192 (339)
....+.++|||+||..
T Consensus 128 ~~~~a~~~AHElGH~l 143 (194)
T cd04269 128 LLLFAVTMAHELGHNL 143 (194)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 4678999999999988
No 60
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=63.61 E-value=3.9 Score=33.14 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 019552 181 QAVLAHELGHLK 192 (339)
Q Consensus 181 ~aVLaHElgHi~ 192 (339)
..+++||+||..
T Consensus 108 ~~~~~HEiGH~l 119 (124)
T PF13582_consen 108 VDTFAHEIGHNL 119 (124)
T ss_dssp TTHHHHHHHHHT
T ss_pred ceEeeehhhHhc
Confidence 389999999975
No 61
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=62.92 E-value=6.5 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.4
Q ss_pred ECHHHHhhc---CHHHHHHHHHHHHHHHH---hcchhHHH
Q 019552 167 VHTSLVELL---TRKELQAVLAHELGHLK---CDHGVWLT 200 (339)
Q Consensus 167 I~~gLl~~L---~~dEL~aVLaHElgHi~---~~H~~~~~ 200 (339)
+.++||+.+ ++.+|+..|=|||+|-+ ++|...+-
T Consensus 181 FdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNE 220 (376)
T COG4324 181 FDDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNE 220 (376)
T ss_pred cccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhH
Confidence 446677654 78999999999999987 66776653
No 62
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=60.37 E-value=16 Score=39.92 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCC--CcEEEEeCCCCcEEEeeccCCccEEEECHHHHhh--cC---HHHHHHHHHHHHHHHHhcch
Q 019552 127 QLMTEAAEILNLEA--PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LT---RKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 127 ~~l~~l~~~lgi~~--p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~--L~---~dEL~aVLaHElgHi~~~H~ 196 (339)
+.++-+-+..|++- |++-++-.|..++.++ .+-+.|.+...++.. .+ .+.+..|++||++|-=-|+.
T Consensus 230 ~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaM---En~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnl 303 (831)
T TIGR02412 230 QGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAM---ENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDL 303 (831)
T ss_pred HHHHHHHHHhCCCCCcccCCEEEcCCCCCCcc---cccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence 34444455678663 4444433344332222 123467777665521 12 24577899999999887754
No 63
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=59.92 E-value=4.8 Score=35.21 Aligned_cols=14 Identities=43% Similarity=0.437 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHh
Q 019552 180 LQAVLAHELGHLKC 193 (339)
Q Consensus 180 L~aVLaHElgHi~~ 193 (339)
-.-++|||+||.--
T Consensus 111 ~~~~~aHElGH~lG 124 (173)
T PF13574_consen 111 GIDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred eeeeehhhhHhhcC
Confidence 34569999999883
No 64
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=59.15 E-value=19 Score=34.95 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCC--CcEEEeeccCCccEEEECHHHH-hh--c----CHHHHHHHHHHHHHHHHh
Q 019552 125 LHQLMTEAAEILNLE--APDLYVRQSPV--PNAYTLAISGKKPFVVVHTSLV-EL--L----TRKELQAVLAHELGHLKC 193 (339)
Q Consensus 125 L~~~l~~l~~~lgi~--~p~v~v~~~~~--~NAfa~G~~g~~~~IvI~~gLl-~~--L----~~dEL~aVLaHElgHi~~ 193 (339)
..+.+.-+.+..|++ .+++-++--|. .+++. ..+.|.+....+ .. . ...++..+||||++|.--
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me-----~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWf 308 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGME-----NWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWF 308 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE-------TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTB
T ss_pred hHHHHHHHHhhccccceecceeEEEEecccccccc-----ccccccccccccccCcccccchhhhhhHHHHHHHHHHHHh
Confidence 444555555667865 34444443333 33333 223566665543 11 1 245799999999999887
Q ss_pred cch
Q 019552 194 DHG 196 (339)
Q Consensus 194 ~H~ 196 (339)
|+.
T Consensus 309 Gn~ 311 (390)
T PF01433_consen 309 GNL 311 (390)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 65
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=59.02 E-value=7.9 Score=34.31 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.3
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 019552 175 LTRKELQAVLAHELGHLK 192 (339)
Q Consensus 175 L~~dEL~aVLaHElgHi~ 192 (339)
-+....+.++|||+||..
T Consensus 126 ~~~~~~a~~~AHelGH~l 143 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNL 143 (199)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 356788999999999986
No 66
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=58.89 E-value=7.7 Score=39.08 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=26.0
Q ss_pred CCCcEEEeeccCC-------ccEEEECHHHHh-------hcCHHHHHHHHHHHHHHHHh
Q 019552 149 PVPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 149 ~~~NAfa~G~~g~-------~~~IvI~~gLl~-------~L~~dEL~aVLaHElgHi~~ 193 (339)
....||+.++.+. -|..+|...+-. .|+-+++ ..|+||+||..|
T Consensus 198 K~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v-~tLfHE~GHa~H 255 (458)
T PF01432_consen 198 KRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLLSHDDV-ETLFHEFGHAMH 255 (458)
T ss_dssp S-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B-SHHHH-HHHHHHHHHHHH
T ss_pred CCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCccChhhH-HHHHHHHhHHHH
Confidence 4567888877542 144444443333 3477788 678999999984
No 67
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=58.28 E-value=5.4 Score=41.15 Aligned_cols=47 Identities=28% Similarity=0.411 Sum_probs=30.2
Q ss_pred CcEEEEeCCCCcEEEeeccCCccEEE-ECHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 019552 141 PDLYVRQSPVPNAYTLAISGKKPFVV-VHTSLVELLTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 141 p~v~v~~~~~~NAfa~G~~g~~~~Iv-I~~gLl~~L~~dEL~aVLaHElgHi~~~ 194 (339)
-++.|+....| ..|+ .+|.+. ++..|+. .+.-+.-|||||++|--.|
T Consensus 255 yDllvlPpSFP---~gGM--ENPcltF~TpTlla--GDrsl~~vIaHEIAHSWtG 302 (613)
T KOG1047|consen 255 YDLLVLPPSFP---FGGM--ENPCLTFVTPTLLA--GDRSLVDVIAHEIAHSWTG 302 (613)
T ss_pred ceEEEecCCCC---cccc--cCcceeeecchhhc--CCcchhhHHHHHhhhhhcc
Confidence 46667653321 1233 456554 6666665 5677899999999997655
No 68
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=58.00 E-value=5.7 Score=38.66 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred CHHHHhhc---CHHHHHHHHHHHHHHHH---hcchhHH
Q 019552 168 HTSLVELL---TRKELQAVLAHELGHLK---CDHGVWL 199 (339)
Q Consensus 168 ~~gLl~~L---~~dEL~aVLaHElgHi~---~~H~~~~ 199 (339)
.+++++.+ ++.||+.+|=|||+|-. .+|...|
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FN 187 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFN 187 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhh
Confidence 45666655 78999999999999966 5677655
No 69
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=57.92 E-value=8.5 Score=38.05 Aligned_cols=42 Identities=33% Similarity=0.551 Sum_probs=26.8
Q ss_pred eCCCCcEEEeecc-CCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 147 QSPVPNAYTLAIS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 147 ~~~~~NAfa~G~~-g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
+.....||+.++. +..|+|+.+-. . +.++ ...|+||+||..+
T Consensus 193 ~gK~~gaf~~~~~~~~~p~i~~n~~--~--~~~~-v~tl~HE~GHa~h 235 (427)
T cd06459 193 KGKRSGAYCTGLPPGKHPFILMNFN--G--TLDD-VFTLAHELGHAFH 235 (427)
T ss_pred CCCCCCeecCCCCCCCCCeEEecCC--C--Chhh-HHHHHHHhhHHHH
Confidence 3445678998875 34566755421 1 3444 4568999999774
No 70
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=57.72 E-value=5.1 Score=34.17 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHH-hcch
Q 019552 177 RKELQAVLAHELGHLK-CDHG 196 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~-~~H~ 196 (339)
...+..|+.|||||.. .+|.
T Consensus 104 ~~~~~~~~~HEiGHaLGL~H~ 124 (157)
T cd04278 104 GTDLFSVAAHEIGHALGLGHS 124 (157)
T ss_pred cchHHHHHHHHhccccccCCC
Confidence 3569999999999987 3444
No 71
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=55.78 E-value=4.8 Score=35.42 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 019552 177 RKELQAVLAHELGHLK 192 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~ 192 (339)
.-+...++|||+||..
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 4567889999999998
No 72
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=55.52 E-value=52 Score=25.03 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=31.8
Q ss_pred ChHHHHHHH----HHHHHHcCCCCC---cEEEEeCCCCcE-EEeeccCCccEEEECHHHHhhcCHHHHHHHHH
Q 019552 121 QLPELHQLM----TEAAEILNLEAP---DLYVRQSPVPNA-YTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (339)
Q Consensus 121 ~~p~L~~~l----~~l~~~lgi~~p---~v~v~~~~~~NA-fa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLa 185 (339)
.+|+..+.+ +..++++|+..| ++.|+++..-+- +.++ .+| .+ .++++||.+|-|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~~~~~lVlP---~~P-----~~---~lse~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESPTVLYLVLP---VNP-----DI---ELTDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCCCeEEEEec---CCC-----CC---CCCHHHHHHhhC
Confidence 355555555 667777898754 566666543222 2222 222 23 799999999864
No 73
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=53.84 E-value=9.5 Score=38.83 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=25.1
Q ss_pred CCcEEEeeccCCc---------cEEEECHHHHh-------hcCHHHHHHHHHHHHHHHHh
Q 019552 150 VPNAYTLAISGKK---------PFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 150 ~~NAfa~G~~g~~---------~~IvI~~gLl~-------~L~~dEL~aVLaHElgHi~~ 193 (339)
...|++.++.+.+ |.++|-..+-. .|+-+++ ..|+||+||..|
T Consensus 218 ~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll~~~~V-~TLfHEfGHalH 276 (472)
T cd06455 218 YGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLLRHDEV-ETFFHEFGHVIH 276 (472)
T ss_pred CCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCCCHHHH-HHHHHHHHHHHH
Confidence 5678887665433 43344222211 2345666 468999999994
No 74
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=52.95 E-value=6.3 Score=33.50 Aligned_cols=16 Identities=50% Similarity=0.623 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019552 177 RKELQAVLAHELGHLK 192 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~ 192 (339)
......+++||+||..
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999988
No 75
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=52.95 E-value=12 Score=36.43 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCCCcEEEeeccC----CccEEEECHHHHhh-------cCHHHHHHHHHHHHHHHHhc
Q 019552 148 SPVPNAYTLAISG----KKPFVVVHTSLVEL-------LTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 148 ~~~~NAfa~G~~g----~~~~IvI~~gLl~~-------L~~dEL~aVLaHElgHi~~~ 194 (339)
.....||+.++.+ ..|.+.|....-.. ++-+++. .+.||+||..+.
T Consensus 112 gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~-tl~HE~GHa~h~ 168 (365)
T cd06258 112 GKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLLGHDDIN-TLFHEFGHAVHF 168 (365)
T ss_pred CCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcCCHHHHH-HHHHHHhHHHHH
Confidence 3456888887642 14666666655442 4667775 478999999953
No 76
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=52.91 E-value=4.7 Score=37.04 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH
Q 019552 182 AVLAHELGHLK 192 (339)
Q Consensus 182 aVLaHElgHi~ 192 (339)
.++||||||..
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 69999999988
No 77
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=52.25 E-value=8.3 Score=34.90 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 019552 179 ELQAVLAHELGHLK 192 (339)
Q Consensus 179 EL~aVLaHElgHi~ 192 (339)
....++|||+||..
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 45899999999988
No 78
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=51.97 E-value=8.3 Score=33.23 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=17.4
Q ss_pred EEEECHHHHh-hcCHHHHHHHHHHHHHHHH
Q 019552 164 FVVVHTSLVE-LLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 164 ~IvI~~gLl~-~L~~dEL~aVLaHElgHi~ 192 (339)
.|++....+. ..+.....-+|.||+||+.
T Consensus 52 ~vv~~~~~l~~~~~~~~~g~TltHEvGH~L 81 (154)
T PF05572_consen 52 GVVINYRYLGGNNSQYNFGKTLTHEVGHWL 81 (154)
T ss_dssp EEGGGSSSSTT--TTS-SSHHHHHHHHHHT
T ss_pred EEEEcCcccCCCCCccccccchhhhhhhhh
Confidence 3445433332 2234556789999999998
No 79
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=51.30 E-value=14 Score=33.29 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=23.5
Q ss_pred ccEEEECHHHHhhcC-------HHHHHHHHHHHHHHHH
Q 019552 162 KPFVVVHTSLVELLT-------RKELQAVLAHELGHLK 192 (339)
Q Consensus 162 ~~~IvI~~gLl~~L~-------~dEL~aVLaHElgHi~ 192 (339)
+..|.+..+.+.... .+-+..+++||+||..
T Consensus 91 ~a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~l 128 (197)
T cd04276 91 KADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTL 128 (197)
T ss_pred EEEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788888876532 2558999999999987
No 80
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=51.18 E-value=11 Score=40.28 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=32.4
Q ss_pred CCCcEEEeeccCCccEEEECHHHHhh----------cCHHHHHHHHHHHHHHHHhcc
Q 019552 149 PVPNAYTLAISGKKPFVVVHTSLVEL----------LTRKELQAVLAHELGHLKCDH 195 (339)
Q Consensus 149 ~~~NAfa~G~~g~~~~IvI~~gLl~~----------L~~dEL~aVLaHElgHi~~~H 195 (339)
...|||-.. .+..|+++.|+++. ++-.-+-+|||||++|---.+
T Consensus 480 ~~~na~Y~~---~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~ 533 (687)
T KOG3624|consen 480 AQVNAFYSP---EKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQ 533 (687)
T ss_pred ceeeccccC---CCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhccccc
Confidence 357777653 34578999999884 455678999999999976443
No 81
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=50.37 E-value=8.2 Score=34.79 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=11.7
Q ss_pred HHHHHHHHHHH-hcchh
Q 019552 182 AVLAHELGHLK-CDHGV 197 (339)
Q Consensus 182 aVLaHElgHi~-~~H~~ 197 (339)
.+++||+||.. .+|..
T Consensus 139 ~~~aHEiGH~lGl~H~~ 155 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDF 155 (206)
T ss_pred hHHHHHHHHHhcCCCCc
Confidence 55999999988 34443
No 82
>PRK14015 pepN aminopeptidase N; Provisional
Probab=50.32 E-value=19 Score=39.66 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcchh
Q 019552 179 ELQAVLAHELGHLKCDHGV 197 (339)
Q Consensus 179 EL~aVLaHElgHi~~~H~~ 197 (339)
.+..|++||++|-=-|+..
T Consensus 295 ~i~~vIaHElaHqWFGNlV 313 (875)
T PRK14015 295 RIESVIAHEYFHNWTGNRV 313 (875)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 4889999999998877653
No 83
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=50.15 E-value=32 Score=38.03 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred HHcCCC--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhc-------CHHHHHHHHHHHHHHHHhcch
Q 019552 134 EILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-------TRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 134 ~~lgi~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L-------~~dEL~aVLaHElgHi~~~H~ 196 (339)
+-.+++ .|++=++--|+..+-+.= +.+.|+.....+-.= +...++-|+|||+||-=-|..
T Consensus 272 ~~f~i~yPLpK~D~iavPdf~~GAME---NwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNL 340 (882)
T KOG1046|consen 272 DYFGIPYPLPKLDLVAVPDFSAGAME---NWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNL 340 (882)
T ss_pred HHhCCCCCCccccEEecCCccccchh---cCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345665 454444333443333321 233566555443211 256799999999999887654
No 84
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=49.25 E-value=15 Score=36.88 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=27.0
Q ss_pred CCcEEEeeccCC-------ccEEEECHHHHh-------hcCHHHHHHHHHHHHHHHHh
Q 019552 150 VPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 150 ~~NAfa~G~~g~-------~~~IvI~~gLl~-------~L~~dEL~aVLaHElgHi~~ 193 (339)
..+|++.++.+. .|++++.-.+-. .|+-+|+. +|.||+||..|
T Consensus 165 ~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~-tLfHEfGHalH 221 (422)
T cd06456 165 RGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALLTHDEVT-TLFHEFGHALH 221 (422)
T ss_pred CCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCccCHHHHH-HHHHHHHHHHH
Confidence 356777665432 376666444322 34667776 47899999994
No 85
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=45.88 E-value=11 Score=31.38 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 019552 181 QAVLAHELGHLK 192 (339)
Q Consensus 181 ~aVLaHElgHi~ 192 (339)
.+|+.||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 359999999997
No 86
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=42.03 E-value=2e+02 Score=28.84 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 126 HQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 126 ~~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
.+..+++.+.+|....+-.+-. .+++|+.|+.+..++| ++..-+. +.-.=-.-++||+||-.+...
T Consensus 110 ~~~~~~~~~~~g~df~~griD~--s~hpF~~~~~~~dvRI--tt~y~~~-d~~~~l~t~iHE~GHalye~~ 175 (396)
T cd06460 110 EALGRELLEALGFDFDRGRLDV--SAHPFTGGLGPGDVRI--TTRYDEN-DFRSALFSTIHETGHALYEQG 175 (396)
T ss_pred HHHHHHHHHHhCCcccCCeeec--CCCCCCCCCCCCCceE--EeeeCCc-chHHHHHHHHHHhhHHHHHhc
Confidence 4445678888887754444422 2456998875544444 4332111 111222457899999997663
No 87
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=42.03 E-value=67 Score=28.19 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.0
Q ss_pred CccEEEECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 161 KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 161 ~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
+++ |++-..-| -+.+++.-|+.|||-|.--.+-
T Consensus 75 ~~g-IvlCqN~l--~~q~h~n~vv~HElIH~fDd~r 107 (194)
T KOG3314|consen 75 GRG-IVLCQNRL--TIQDHVNQVVIHELIHAFDDCR 107 (194)
T ss_pred CCc-eEEecccc--chHHHHHHHHHHHHHHHHHhhh
Confidence 344 55544422 2689999999999999985443
No 88
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=40.75 E-value=18 Score=31.72 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCC--------CCcEEEEeCCC----CcEEEeeccC------CccEEEECHHHHhhc--CH
Q 019552 118 SKNQLPELHQLMTEAAEILNLE--------APDLYVRQSPV----PNAYTLAISG------KKPFVVVHTSLVELL--TR 177 (339)
Q Consensus 118 ~~~~~p~L~~~l~~l~~~lgi~--------~p~v~v~~~~~----~NAfa~G~~g------~~~~IvI~~gLl~~L--~~ 177 (339)
++.+...+.+.+++..+..++. ..+|.+..... .-+++. +++ ..+.|.+........ ..
T Consensus 32 ~~~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~~~~~g~a~-~p~~~~~~~~~g~i~~~~~~~~~~~~~g 110 (186)
T cd04277 32 SAAQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPDGNTAGYAY-YPGSGSGTAYGGDIWFNSSYDTNSDSPG 110 (186)
T ss_pred CHHHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCCCCccEEEE-CCCCCccccccceeEEecCcccccCCCC
Confidence 3444455666666666655543 13455544332 223332 221 224566665543321 23
Q ss_pred HHHHHHHHHHHHHHH-hcchh
Q 019552 178 KELQAVLAHELGHLK-CDHGV 197 (339)
Q Consensus 178 dEL~aVLaHElgHi~-~~H~~ 197 (339)
.....++.||+||.. .+|+.
T Consensus 111 ~~~~~t~~HEiGHaLGL~H~~ 131 (186)
T cd04277 111 SYGYQTIIHEIGHALGLEHPG 131 (186)
T ss_pred hhhHHHHHHHHHHHhcCCCCC
Confidence 567899999999998 34543
No 89
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=40.24 E-value=1.1e+02 Score=28.82 Aligned_cols=31 Identities=26% Similarity=0.223 Sum_probs=18.6
Q ss_pred EEECHHHHh-hcCHHHH---HHHHHHHHHHHHhcc
Q 019552 165 VVVHTSLVE-LLTRKEL---QAVLAHELGHLKCDH 195 (339)
Q Consensus 165 IvI~~gLl~-~L~~dEL---~aVLaHElgHi~~~H 195 (339)
|..+.+..+ .++.+.+ .--+.||+||..+.-
T Consensus 200 i~~~~~~~~~~l~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 200 IGFPPNWMNELLNPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp EEEETT--HHHH-HHHHHHH-HHHHHHHHHHH-BG
T ss_pred EEeeCcHHhcccCHhHcCCCCeeehhhhhhhcCcc
Confidence 555544444 3577777 668999999999755
No 90
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=39.37 E-value=17 Score=38.37 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=19.6
Q ss_pred EECHHHHhhcCHHHHHHHHHHHHHHHHhcch
Q 019552 166 VVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (339)
Q Consensus 166 vI~~gLl~~L~~dEL~aVLaHElgHi~~~H~ 196 (339)
+.+..++. .+.+...|+|||++|-=-|+.
T Consensus 267 f~~~~ll~--~d~s~~~viaHElAHqWfGNl 295 (601)
T TIGR02411 267 FATPTLIA--GDRSNVDVIAHELAHSWSGNL 295 (601)
T ss_pred eecccccc--CChhhhhhHHHHHHhhccCce
Confidence 44444442 344567899999999887754
No 91
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=38.70 E-value=47 Score=29.45 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHcCCC------CCcEEE-EeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 124 ELHQLMTEAAEILNLE------APDLYV-RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~------~p~v~v-~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
.+.+.+++..+...++ ....+| +.+..-.--.+|..++...|.|..+.. -.+++.||++|..
T Consensus 23 ~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~~~gC~S~vG~~~g~q~i~l~~~c~-------~~~~i~HEl~HaL 91 (191)
T PF01400_consen 23 RIRKAMDEWEKNTCIRFVERTENEDDYISFSNGSGCWSYVGRQGGEQTINLGDGCF-------SVGTILHELGHAL 91 (191)
T ss_dssp HHHHHHHHHHHHSSEEEEE-SSSSSSEEEEESSSSEEEESS--SSEEEEEE-TTC--------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCceEEEeecCccccchhhhcCcceeEEecceeC-------CccchHHHHHHHH
Confidence 4566666666555543 111233 233322223345554455666653321 2569999999988
No 92
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=38.59 E-value=21 Score=31.72 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019552 178 KELQAVLAHELGHLK 192 (339)
Q Consensus 178 dEL~aVLaHElgHi~ 192 (339)
.+..+++.||+||..
T Consensus 90 ~~~~~~i~HElgHaL 104 (198)
T cd04327 90 PEFSRVVLHEFGHAL 104 (198)
T ss_pred hhHHHHHHHHHHHHh
Confidence 456789999999998
No 93
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=38.56 E-value=21 Score=31.22 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHh
Q 019552 180 LQAVLAHELGHLKC 193 (339)
Q Consensus 180 L~aVLaHElgHi~~ 193 (339)
+-+++.||+||...
T Consensus 7 ~i~i~~HE~gH~~~ 20 (192)
T PF02163_consen 7 LISIVLHELGHALA 20 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 35789999999873
No 94
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=35.49 E-value=7.1 Score=34.98 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHH
Q 019552 180 LQAVLAHELGHLK 192 (339)
Q Consensus 180 L~aVLaHElgHi~ 192 (339)
.+.++||||||..
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 5789999999987
No 95
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=34.09 E-value=24 Score=31.27 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 019552 181 QAVLAHELGHLK 192 (339)
Q Consensus 181 ~aVLaHElgHi~ 192 (339)
-.|+-||+||..
T Consensus 10 ~~v~iHElGH~~ 21 (182)
T cd06163 10 ILIFVHELGHFL 21 (182)
T ss_pred HHHHHHHHHHHH
Confidence 358899999987
No 96
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=33.53 E-value=29 Score=31.56 Aligned_cols=20 Identities=40% Similarity=0.277 Sum_probs=17.1
Q ss_pred hhcCHHHHHHHHHHHHHHHH
Q 019552 173 ELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 173 ~~L~~dEL~aVLaHElgHi~ 192 (339)
..|.+.-.-+|||||+.|.-
T Consensus 86 ~GLPrll~gsiLAHE~mHa~ 105 (212)
T PF12315_consen 86 YGLPRLLTGSILAHELMHAW 105 (212)
T ss_pred CCCCHHHHhhHHHHHHHHHH
Confidence 45688888999999999976
No 97
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=33.49 E-value=28 Score=31.37 Aligned_cols=14 Identities=50% Similarity=0.662 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 019552 179 ELQAVLAHELGHLK 192 (339)
Q Consensus 179 EL~aVLaHElgHi~ 192 (339)
=+-.|+.||+||..
T Consensus 37 l~~~v~iHElgH~~ 50 (208)
T cd06161 37 LFLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 35689999999987
No 98
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=33.35 E-value=73 Score=31.53 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcCCC-CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHH
Q 019552 122 LPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 189 (339)
Q Consensus 122 ~p~L~~~l~~l~~~lgi~-~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElg 189 (339)
..+..+.+++.++..+.. ...|.+.++-..+|.+.| + .|.|+.+- .+++.++.+++-||+|
T Consensus 136 A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~---~--~l~i~~~a--~fs~~~l~~L~~HEig 197 (366)
T TIGR02421 136 ATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSG---D--KLKLNSDA--MFSERDLEALIHHEIG 197 (366)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccC---C--eEEECCCC--CcCHHHHHHHHHHhHH
Confidence 447777888888877765 233333333345666543 2 58888863 4699999999999998
No 99
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=33.23 E-value=41 Score=29.54 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=19.0
Q ss_pred eeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHHHH
Q 019552 156 LAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (339)
Q Consensus 156 ~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgHi~ 192 (339)
+|..++...|-|..+. +..+++.||++|..
T Consensus 57 vG~~~~~q~i~l~~~c-------~~~g~v~HE~~Hal 86 (180)
T cd04280 57 VGRVGGRQVVSLGSGC-------FSLGTIVHELMHAL 86 (180)
T ss_pred cCccCCceeEEeCCCc-------CcCchhHHHHHHHh
Confidence 3443444455565532 22689999999987
No 100
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=32.77 E-value=29 Score=30.07 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 019552 181 QAVLAHELGHLK 192 (339)
Q Consensus 181 ~aVLaHElgHi~ 192 (339)
-+|+.||+||..
T Consensus 9 i~i~iHE~gH~~ 20 (180)
T cd05709 9 ISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHH
Confidence 468999999987
No 101
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=32.40 E-value=41 Score=26.74 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=21.4
Q ss_pred cEEEECHHHHhh-c-CH----HHHHHHHHHHHHHHHhcc
Q 019552 163 PFVVVHTSLVEL-L-TR----KELQAVLAHELGHLKCDH 195 (339)
Q Consensus 163 ~~IvI~~gLl~~-L-~~----dEL~aVLaHElgHi~~~H 195 (339)
..|+|...=+.. . ++ ++++-|+-||+||+-.-+
T Consensus 50 ~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 50 DRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 467777765554 3 44 467788899999987543
No 102
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=32.30 E-value=40 Score=28.03 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=19.8
Q ss_pred EEEECHH-HHhhcCH------HHHHHHHHHHHHHHH
Q 019552 164 FVVVHTS-LVELLTR------KELQAVLAHELGHLK 192 (339)
Q Consensus 164 ~IvI~~g-Ll~~L~~------dEL~aVLaHElgHi~ 192 (339)
.|.+... +++..++ |++.-|+-||+||.-
T Consensus 86 rItlYRrailDywae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 86 RITLYRRALLDYWAENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred eeeeeHHHHHHHHhhhhhhHhhHhhhhhhhhhhhhc
Confidence 4666654 5555543 467889999999964
No 103
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=31.94 E-value=27 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q 019552 176 TRKELQAVLAHELGHLK 192 (339)
Q Consensus 176 ~~dEL~aVLaHElgHi~ 192 (339)
.+-.+-++++||+||.+
T Consensus 192 p~~~~P~T~~HElAHq~ 208 (318)
T PF12725_consen 192 PPYSLPFTICHELAHQL 208 (318)
T ss_pred CcccccHHHHHHHHHHh
Confidence 45678999999999998
No 104
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=31.28 E-value=32 Score=31.58 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 019552 180 LQAVLAHELGHLK 192 (339)
Q Consensus 180 L~aVLaHElgHi~ 192 (339)
+-.|+.||+||..
T Consensus 53 ~~~v~iHElgH~~ 65 (227)
T cd06164 53 FASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 5689999999987
No 105
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=30.78 E-value=40 Score=33.34 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=23.1
Q ss_pred cEEEECHHHHhhc---CHHHHHHHHHHHHHHHHh
Q 019552 163 PFVVVHTSLVELL---TRKELQAVLAHELGHLKC 193 (339)
Q Consensus 163 ~~IvI~~gLl~~L---~~dEL~aVLaHElgHi~~ 193 (339)
-+++|....+..- +.+...+.||||+-|..+
T Consensus 119 e~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmIn 152 (366)
T PF10460_consen 119 EYFYIDSETLYLGGNSGPDTVYSTLAHEFQHMIN 152 (366)
T ss_pred eEEEEecHHhhccCCccHHHHHHHHHHHHHHHHH
Confidence 3666766665432 368899999999999984
No 106
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=29.89 E-value=54 Score=36.13 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCC--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHH-hh------cCHHHHHHHHHHHHHHHHhc
Q 019552 124 ELHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLV-EL------LTRKELQAVLAHELGHLKCD 194 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl-~~------L~~dEL~aVLaHElgHi~~~ 194 (339)
.+.+.++-.-+..|++ .|. .++.-+..|+-+. .+.+.+.++...+ .. -+-+..+.|++||++|-=-|
T Consensus 246 ~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaM---EN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaHqWfG 321 (859)
T COG0308 246 ETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAM---ENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAHQWFG 321 (859)
T ss_pred HHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccc---cccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhhhccc
Confidence 4444455555566776 343 2333344444333 1223444444421 11 12256777999999998877
Q ss_pred chh
Q 019552 195 HGV 197 (339)
Q Consensus 195 H~~ 197 (339)
+-.
T Consensus 322 nlV 324 (859)
T COG0308 322 NLV 324 (859)
T ss_pred cee
Confidence 653
No 107
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=29.02 E-value=44 Score=29.41 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.0
Q ss_pred hcCHHHHHHHHHHHHHHHHhcchh
Q 019552 174 LLTRKELQAVLAHELGHLKCDHGV 197 (339)
Q Consensus 174 ~L~~dEL~aVLaHElgHi~~~H~~ 197 (339)
..|+.|-.++++|++||+..+|-.
T Consensus 126 l~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 126 LLNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999988864
No 108
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=26.97 E-value=42 Score=29.72 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q 019552 179 ELQAVLAHELGHLK 192 (339)
Q Consensus 179 EL~aVLaHElgHi~ 192 (339)
=+-.+..||+||..
T Consensus 40 l~~~l~iHElgH~~ 53 (183)
T cd06160 40 LLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 45678899999987
No 109
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=26.48 E-value=16 Score=34.73 Aligned_cols=12 Identities=58% Similarity=0.769 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 019552 181 QAVLAHELGHLK 192 (339)
Q Consensus 181 ~aVLaHElgHi~ 192 (339)
-.|++||+||..
T Consensus 166 igv~~HE~gH~l 177 (286)
T TIGR03296 166 VGVIAHELGHDL 177 (286)
T ss_pred eeeeehhhhccc
Confidence 599999999965
No 110
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=26.26 E-value=1.2e+02 Score=22.38 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHH
Q 019552 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (339)
Q Consensus 127 ~~l~~l~~~lgi~~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLa 185 (339)
+.++.+.+.++.. .+.+. .++.+|.-+..|.+.|+..+...++++.+..++.
T Consensus 19 ~l~~~l~~~L~~~--~v~l~-----~~~ClG~C~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 19 ELLAALEAGLGPE--GVRVV-----RAPCVGRCERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred HHHHHHHHHhCCC--eEEEE-----ecCcCCccCCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 3444555556644 33333 3346676667899999999999999998887653
No 111
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=26.02 E-value=40 Score=31.75 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019552 178 KELQAVLAHELGHLK 192 (339)
Q Consensus 178 dEL~aVLaHElgHi~ 192 (339)
+....|+.||+||--
T Consensus 214 ~~~~~v~vHE~GHsf 228 (264)
T PF09471_consen 214 PSFKQVVVHEFGHSF 228 (264)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccccceeeeeccccc
Confidence 368999999999944
No 112
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=24.79 E-value=66 Score=33.28 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=18.4
Q ss_pred EEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 164 FVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 164 ~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
.|-|....+.....++.-.|+.||++|..-
T Consensus 194 ~in~~p~~i~~~~~~~~~~~~~HEi~HaLG 223 (521)
T PF01457_consen 194 VININPSYIPSFYFQEFFRTVIHEIAHALG 223 (521)
T ss_dssp EEE--GGG---S--HHHHHHHHHHHHHHTT
T ss_pred EEEEchhHccchhhhcccceeeeeeeeeee
Confidence 455666655554567888999999999984
No 113
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=24.51 E-value=50 Score=29.57 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019552 177 RKELQAVLAHELGHLKC 193 (339)
Q Consensus 177 ~dEL~aVLaHElgHi~~ 193 (339)
+=.+-.++.||+||..-
T Consensus 19 ~~~~l~t~~HE~gHal~ 35 (200)
T PF13398_consen 19 PFRLLVTFVHELGHALA 35 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566799999999873
No 114
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=23.92 E-value=48 Score=31.18 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 019552 180 LQAVLAHELGHLK 192 (339)
Q Consensus 180 L~aVLaHElgHi~ 192 (339)
.-+|+.||+||..
T Consensus 118 ~isv~iHElgHa~ 130 (263)
T cd06159 118 VVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5679999999987
No 115
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=1.5e+02 Score=29.33 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHHHH
Q 019552 141 PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 190 (339)
Q Consensus 141 p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHElgH 190 (339)
-.+|+.+.+..-|-+.--...-|.+.|....+ ++++++++++.||+|=
T Consensus 209 i~~~~~~~~g~~Ara~v~~d~pp~lli~~~t~--~~~~~V~~Ll~HEigV 256 (434)
T COG3930 209 IRVYESDTAGFVARAEVRDDLPPTLLIRRDTL--MEERRVRALLSHEIGV 256 (434)
T ss_pred eeeeecCccchhhhHhhcCCCCcceeehhhhh--cCHHHHHHHHHhhhhe
Confidence 34555554444443321011234677777654 6999999999999984
No 116
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=22.64 E-value=20 Score=37.90 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=25.1
Q ss_pred cEEEECHHHHhhc------CHHHHHHHHHHHHHHHH
Q 019552 163 PFVVVHTSLVELL------TRKELQAVLAHELGHLK 192 (339)
Q Consensus 163 ~~IvI~~gLl~~L------~~dEL~aVLaHElgHi~ 192 (339)
....+++||.... .+.|..-|+|||+||--
T Consensus 369 ~~~sLNtGi~T~~NYg~~Vp~kvs~lt~AHEiGHNf 404 (764)
T KOG3658|consen 369 KKRSLNTGISTSVNYGKRVPTKVSDLTLAHEIGHNF 404 (764)
T ss_pred ceEEeecceeeeeecCCccCcchhheeehhhhcccc
Confidence 5788999998755 36899999999999965
No 117
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=22.59 E-value=1.5e+02 Score=25.22 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=21.5
Q ss_pred cEEEECHHHHhh--cCHHHHHHHHHHHHHHH
Q 019552 163 PFVVVHTSLVEL--LTRKELQAVLAHELGHL 191 (339)
Q Consensus 163 ~~IvI~~gLl~~--L~~dEL~aVLaHElgHi 191 (339)
..|.|-..+.+. -..+--+.+|.||+.|+
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 479999998874 23466789999999994
No 118
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=21.77 E-value=1.9e+02 Score=28.46 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHcCC-C--CCcEEEEeCCCCcEEEeeccCCccEEEECHHHHhhcCHHHHHHHHHHHH-HHHHhc
Q 019552 122 LPELHQLMTEAAEILNL-E--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHEL-GHLKCD 194 (339)
Q Consensus 122 ~p~L~~~l~~l~~~lgi-~--~p~v~v~~~~~~NAfa~G~~g~~~~IvI~~gLl~~L~~dEL~aVLaHEl-gHi~~~ 194 (339)
..++...+++.++...- . ...|.+.++-..+|.+.+ . .|.|+.+. .+++.++.+.+-||+ .|+...
T Consensus 111 a~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~---~--~l~I~~~~--~fs~~~l~~L~~HEigvH~lt~ 180 (349)
T PF08014_consen 111 AEEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSG---D--RLKINKNA--MFSERDLEALLHHEIGVHLLTT 180 (349)
T ss_pred HHHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccC---C--eeEEcCCC--CcCHHHHHHHHHHhhhhhhccc
Confidence 44666777776666521 1 223444444456776543 2 38888753 369999999999999 577644
No 119
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=21.62 E-value=57 Score=30.71 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHH
Q 019552 177 RKELQAVLAHELGH 190 (339)
Q Consensus 177 ~dEL~aVLaHElgH 190 (339)
+-+++.||||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 46899999999999
No 120
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=21.31 E-value=59 Score=30.92 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 019552 180 LQAVLAHELGHLK 192 (339)
Q Consensus 180 L~aVLaHElgHi~ 192 (339)
+-+|+.||+||..
T Consensus 135 ~isvvvHElgHal 147 (277)
T cd06162 135 LISGVVHEMGHGV 147 (277)
T ss_pred HHHHHHHHHHHHH
Confidence 6789999999987
No 121
>PRK11767 SpoVR family protein; Provisional
Probab=20.69 E-value=1.3e+02 Score=30.99 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCC-CC-cEEEEeCC-CCcEEEe-ec------------------------cCCccEEEECH-HH---
Q 019552 124 ELHQLMTEAAEILNLE-AP-DLYVRQSP-VPNAYTL-AI------------------------SGKKPFVVVHT-SL--- 171 (339)
Q Consensus 124 ~L~~~l~~l~~~lgi~-~p-~v~v~~~~-~~NAfa~-G~------------------------~g~~~~IvI~~-gL--- 171 (339)
+..+.+.++|+.+|+. -| .+-|++.. ...+++. |+ .|.---|||++ +.
T Consensus 19 ~~~~~I~~iA~~~GLD~yp~~~EIi~~eqml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPciAy 98 (498)
T PRK11767 19 RYLDEIERVAKEYGLDTYPNQIEVITAEQMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPCIAY 98 (498)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEECHHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchHHHH
Confidence 4567778888888987 45 34455543 3444431 22 22112367765 33
Q ss_pred -HhhcCHHHHHHHHHH-HHHHHH
Q 019552 172 -VELLTRKELQAVLAH-ELGHLK 192 (339)
Q Consensus 172 -l~~L~~dEL~aVLaH-ElgHi~ 192 (339)
++.-+.-.-+-|||| ++||.-
T Consensus 99 Lme~Ntl~~q~LViAHv~yGHnd 121 (498)
T PRK11767 99 LMEENTMTMQALVIAHACYGHNS 121 (498)
T ss_pred HhccCcHHHHHHHHHHHHHhhhh
Confidence 333356678899999 699974
No 122
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=20.12 E-value=57 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=16.8
Q ss_pred cEEEECHHHHhhcCHHHHHHHHHHHHHHHHh
Q 019552 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (339)
Q Consensus 163 ~~IvI~~gLl~~L~~dEL~aVLaHElgHi~~ 193 (339)
++|.|...--+ .--+--|+||++|+-+
T Consensus 66 ~~i~IDP~~~~----KGC~~TL~HEL~H~WQ 92 (141)
T PHA02456 66 GWIEIDPDYAN----KGCRDTLAHELNHAWQ 92 (141)
T ss_pred eEEEECCcccc----cchHHHHHHHHHHHHh
Confidence 45666554333 2334568999999874
Done!