Query 019554
Match_columns 339
No_of_seqs 201 out of 665
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2574 mRNA splicing factor P 100.0 3E-112 8E-117 824.5 16.8 333 6-338 38-372 (492)
2 COG1498 SIK1 Protein implicate 100.0 1.5E-78 3.2E-83 592.8 22.4 278 54-338 107-387 (395)
3 PRK14552 C/D box methylation g 100.0 5.3E-77 1.2E-81 592.7 22.9 260 56-318 132-396 (414)
4 KOG2573 Ribosome biogenesis pr 100.0 4.6E-65 9.9E-70 492.7 18.5 250 54-303 158-412 (498)
5 KOG2572 Ribosome biogenesis pr 100.0 3.9E-64 8.5E-69 486.2 19.4 255 53-307 148-402 (498)
6 PF01798 Nop: Putative snoRNA 100.0 7.8E-56 1.7E-60 386.9 7.0 149 156-304 1-150 (150)
7 PF08060 NOSIC: NOSIC (NUC001) 99.8 1.9E-21 4.1E-26 142.1 6.3 53 64-116 1-53 (53)
8 KOG2014 SMT3/SUMO-activating c 60.5 17 0.00037 35.9 5.3 75 132-207 227-305 (331)
9 PF05511 ATP-synt_F6: Mitochon 57.7 20 0.00044 29.6 4.5 51 32-97 38-95 (99)
10 KOG4634 Mitochondrial F1F0-ATP 51.6 47 0.001 27.5 5.6 62 20-98 22-90 (105)
11 PF12347 HJURP_C: Holliday jun 40.0 9.5 0.00021 28.9 0.0 26 311-337 7-32 (64)
12 PF02371 Transposase_20: Trans 39.5 21 0.00045 28.1 1.9 20 193-212 10-29 (87)
13 PF05918 API5: Apoptosis inhib 33.0 1.2E+02 0.0025 32.5 6.7 149 57-210 20-207 (556)
14 TIGR03738 PRTRC_C PRTRC system 28.2 33 0.00072 26.3 1.2 18 84-101 26-43 (66)
15 PF12247 MKT1_N: Temperature d 28.0 1.3E+02 0.0029 24.2 4.8 36 57-93 47-82 (90)
16 PRK10548 flagellar biosynthesi 24.6 4.4E+02 0.0095 22.4 8.9 59 140-205 47-105 (121)
17 PRK15058 cytochrome b562; Prov 24.5 3.3E+02 0.0072 23.6 6.8 76 19-94 35-127 (128)
18 cd00080 HhH2_motif Helix-hairp 24.0 44 0.00095 25.7 1.3 21 193-213 30-50 (75)
19 PF06100 Strep_67kDa_ant: Stre 21.7 45 0.00097 35.1 1.2 52 192-246 7-58 (500)
20 TIGR01589 A_thal_3526 uncharac 21.4 1.4E+02 0.003 22.3 3.4 38 156-194 3-40 (57)
21 PF14454 Prok_Ub: Prokaryotic 21.4 42 0.00091 25.7 0.7 16 85-100 28-43 (65)
No 1
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification]
Probab=100.00 E-value=3.5e-112 Score=824.51 Aligned_cols=333 Identities=61% Similarity=0.937 Sum_probs=323.7
Q ss_pred ccchHhhhhcCCcchhhhHhhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 019554 6 DGDIEDIEALNYDDLDNVSKLQKSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNF 85 (339)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~a~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~ 85 (339)
+.++..+..+.++||+.|+||++|.+|.++|+++++|+.++....+..+++|++|||++||+||++..+|||||+++|+|
T Consensus 38 ~a~~~~~~~l~~dsv~~v~kL~~S~r~~~im~q~E~~l~k~~d~~~i~~~~E~dpeykLIVd~n~iavdI~nEI~ivH~F 117 (492)
T KOG2574|consen 38 DAEMENLLTLTYDSVESVSKLAKSSRYRDIMQQTEEYLGKQVDAKEILGPVEADPEYKLIVDCNQIAVDIENEIVIVHNF 117 (492)
T ss_pred cccccCchhhhhhhHHHHHHHHhccHHHHHHHHHHHHhcccchHHHhcCccccCcceeeeechhhhhhhhhhhHHHHHHH
Confidence 34445566778999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HHHHhcccCccccccccChHHHHHHHHHhcCCCCCCcccccc--cCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHH
Q 019554 86 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEG--LLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDR 163 (339)
Q Consensus 86 lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~--iL~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~ 163 (339)
|||||+.|||||+|||+||++|+++|+.|||+.|...++++. ||++++||+|+|||+||.|..|+++++++|.++|++
T Consensus 118 ikdkY~~RFpELeSLVp~~ldY~~~Vk~LgNelD~~~~~l~~~~~L~~atIMVvsvTasTT~G~~Lp~d~~~~v~eAc~~ 197 (492)
T KOG2574|consen 118 IKDKYSKRFPELESLVPNPLDYAKVVKELGNELDLKKVDLELQAILPSATIMVVSVTASTTQGNKLPEDELEQVLEACEM 197 (492)
T ss_pred HHHHHHhhhhhhHhhccCHHHHHHHHHHHhhhHHHHHhhhhhhccCccceEEEEEEEeeeccCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987777664 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcce
Q 019554 164 ALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGY 243 (339)
Q Consensus 164 i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~ 243 (339)
+++|+..|++|.+||+|||++||||||++||+.+||+||++||||+.||+|||||||+||++|++++||++.+..||+||
T Consensus 198 a~~L~~~k~ki~eyVeSrms~IAPNLs~ivGs~taA~Lig~AGGls~Lsk~PaCNv~vlGk~kk~l~gfst~~~~~~~Gy 277 (492)
T KOG2574|consen 198 AEQLNKLKEKIYEYVESRMSFIAPNLSAIVGSTTAAKLIGIAGGLSELSKMPACNVQVLGKQKKTLIGFSTTSSLPHTGY 277 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHhhhcHHHHHHHHHhhcCchhhccCCcchhhhhhccchhccccccccccCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 019554 244 LEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKK 323 (339)
Q Consensus 244 iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i~~ki~k~~epp~~k~~k~LP~P~~~~kkk 323 (339)
||+|++||++||++|+||+|+|||||+||||||++|++++|.+|.+||++|++||+||+||||.+.+||||+|+|+||||
T Consensus 278 ly~s~ivQk~Ppdl~~ka~Rl~aAKvtLAARVDa~he~~~g~~g~~~k~evekK~eKl~EpPpvk~~KaLP~P~d~pkKk 357 (492)
T KOG2574|consen 278 LYASDIVQKTPPDLRKKAARLVAAKVTLAARVDAGHESPNGELGHEFKAEVEKKIEKLQEPPPVKQTKALPIPLDGPKKK 357 (492)
T ss_pred eeHHhHhhhcCccHHHHHHHHHHHHHHHHHHhhccccCCccHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCCCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhcC
Q 019554 324 RGGRRLRKMKERKFL 338 (339)
Q Consensus 324 RgGrr~Rk~Ke~~~~ 338 (339)
|||||+|||||||+|
T Consensus 358 RgGRR~RKmKEr~~l 372 (492)
T KOG2574|consen 358 RGGRRFRKMKERYAL 372 (492)
T ss_pred ccchHHHHHHHHhhh
Confidence 999999999999997
No 2
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-78 Score=592.77 Aligned_cols=278 Identities=37% Similarity=0.567 Sum_probs=264.4
Q ss_pred CCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCcccccc---cCC
Q 019554 54 MVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEG---LLP 130 (339)
Q Consensus 54 ~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~---iL~ 130 (339)
...+.+.+|++|+|+|+++++||++||.+|+||||||+||||||.+||+++.+|+++|..+||+.++++..+.. +++
T Consensus 107 v~~~~~~~D~~iiqai~~lddiDk~iN~~~~RlrEWY~~hFPEL~~lv~~~~~Y~~~V~~~g~~~~~~~~~~~~l~~~~~ 186 (395)
T COG1498 107 VREEVDKEDKLIIQAIEALDDIDKEINLLAMRLREWYGWHFPELSSLVPDNEQYAKLVSALGNRENINKESLKDLGFALP 186 (395)
T ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhcccHHHHHHHHHHHcchhccchhhHHHHhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999999999988875443 445
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCccc
Q 019554 131 SAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSA 210 (339)
Q Consensus 131 ~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~ 210 (339)
. .++.|..+|.+|+|.++++.|+.+|..+|+.+.+|.+.|+++.+||+++|+.||||||+|||+.+|||||++||||++
T Consensus 187 ~-~~~~i~~aA~~SmG~~~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~vAPNlt~LVG~~lgARLIs~AGgL~~ 265 (395)
T COG1498 187 D-IAIKIAEAAKDSMGADLSEEDIDNIRELAEIILELYELREQLEEYIESKMSEIAPNLTALVGPVLGARLISHAGGLTR 265 (395)
T ss_pred h-HHHHHHHHhhcccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHhHHHHHHHHHHhcCHHH
Confidence 5 788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHH
Q 019554 211 LAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSF 290 (339)
Q Consensus 211 LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~ 290 (339)
||||||||||+|||||++|+++.+++++||||+||+||+|+.+|+|.|||+||+||||||||||||+|++.+++ ..|
T Consensus 266 LAk~PASTIQvLGAEKALFraL~~~~~~PK~GvIy~~p~I~~sp~~~rGkiAR~LAaK~AIAARiD~~s~~~~~---~~l 342 (395)
T COG1498 266 LAKMPASTIQVLGAEKALFRALKTGAKTPKYGVIYQSPLIQKSPPWQRGKIARALAAKLAIAARIDAFSGEPDG---ISL 342 (395)
T ss_pred HHhCccchhhhhhhhHHHHHHHhCCCCCCCceeEeeChhhccCCHHHhhHHHHHHHHHHHHHHHHHhccCCCCh---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccccchhhhhhhhhhcC
Q 019554 291 REEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERKFL 338 (339)
Q Consensus 291 re~i~~ki~k~~epp~~k~~k~LP~P~~~~kkkRgGrr~Rk~Ke~~~~ 338 (339)
|++|++||+++.++|+.+.+|++|.| + +++|+||+.|++|+++..
T Consensus 343 r~ele~Ri~~i~~~~~~pp~k~~~~~-~--~~~~~~r~~~~~~~~~~~ 387 (395)
T COG1498 343 REELEKRIEKLKEKPPKPPTKAKPER-D--KKERPGRYRRKKKEKKAK 387 (395)
T ss_pred HHHHHHHHHHHhccCCCCCCcccccc-c--cccCccccccccccccch
Confidence 99999999999999999999999999 5 888889999999998753
No 3
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=100.00 E-value=5.3e-77 Score=592.74 Aligned_cols=260 Identities=32% Similarity=0.474 Sum_probs=248.8
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCccccccc-CCHHHH
Q 019554 56 LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGL-LPSAII 134 (339)
Q Consensus 56 ~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~i-L~~~~i 134 (339)
...+..+++|+|||+++++||+|||.+|+|||+||+||||||+++|+++.+|+++|+.++|+++++..++.++ ++.+++
T Consensus 132 ~~~~~~D~~iiqai~~ld~ldk~in~~~~RLrewY~~~FPEL~~iv~d~~~Y~~iV~~i~~~~~i~~~~l~~i~l~~eka 211 (414)
T PRK14552 132 SAAQKRDKLAIQAIRAIDDIDKTINLFSERLREWYSLHFPELDELVKKHEEYVKLVSELGDRENYTREKLKKLGLPENKA 211 (414)
T ss_pred hccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCHHhhcCChHHHHHHHHHcCChhhhhhhHHHhccCCHHHH
Confidence 4556678999999999999999999999999999999999999999999999999999999999988888888 899999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCC
Q 019554 135 MVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKM 214 (339)
Q Consensus 135 m~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~Lakm 214 (339)
+.|+++|++|+|.++++.++..|..+|+++++|+++|++|.+||+++|..+||||++|||+.+|||||++||||.+||+|
T Consensus 212 ~~I~~aA~~S~G~~lse~dl~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAPNLtaLVG~~lAArLIa~AGsL~~Lak~ 291 (414)
T PRK14552 212 RKIAEAAKKSMGADLSEFDLEAIKKLANEILDLYKLREELEDYLETVMKEVAPNLTALVGPSLGARLISLAGGLEELAKM 291 (414)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHhhHHHHHHHHHhCCHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHH
Q 019554 215 PACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEI 294 (339)
Q Consensus 215 Pa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i 294 (339)
||||||+|||+|++|+||++++.+|||||||||++||++|+++||||+|+||||||||||||+|++ +.+|.+||++|
T Consensus 292 PastIqiLGAeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgkiaR~lA~K~alAARiD~~~~---~~~G~~l~~~l 368 (414)
T PRK14552 292 PASTIQVLGAEKALFRHLRTGAKPPKHGVIFQYPAIHGSPWWQRGKIARALAAKLAIAARVDYFSG---RYIGDELKEEL 368 (414)
T ss_pred CchHHHHhchhhHHHHHhccCCCCCCceEEEcCHHHhhCCHHHHHHHHHHHHHHHHHHHHhhhcCC---ccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999974 47999999999
Q ss_pred HHHHH----HhcCCCCCCCCCCCCCCCC
Q 019554 295 HKKIE----KWQEPPPAKQPKPLPVPDS 318 (339)
Q Consensus 295 ~~ki~----k~~epp~~k~~k~LP~P~~ 318 (339)
++||+ ||+||||.+..++-|.+..
T Consensus 369 ~~ri~~i~~k~~~Pp~~k~~~~~~~~~~ 396 (414)
T PRK14552 369 NKRIEEIKEKYPKPPKKKREEKKPQKRK 396 (414)
T ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCcc
Confidence 99999 6799999999887554443
No 4
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-65 Score=492.73 Aligned_cols=250 Identities=27% Similarity=0.426 Sum_probs=238.6
Q ss_pred CCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCccccc---ccC-
Q 019554 54 MVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLE---GLL- 129 (339)
Q Consensus 54 ~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~---~iL- 129 (339)
..+.-+..+++|+|++.|++++|++||.+.||||+||+||||||..+|+++..|+++|+.|+++..++...+. ..|
T Consensus 158 VkfnV~R~DnmvIqaI~lLDqlDKDINtfaMRirEwYswhFPEL~kiv~DNy~ya~~~~~i~dk~~l~ed~~~~~~e~l~ 237 (498)
T KOG2573|consen 158 VKFNVNRVDNMVIQAIALLDQLDKDINTFAMRIREWYSWHFPELVKIVPDNYKYAKVVKFIVDKEKLNEDGLHELLEDLG 237 (498)
T ss_pred eeecccccchHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccHHHHHhccchHHHHHHHHHHhchhhccccchhHHHHHhc
Confidence 4566788899999999999999999999999999999999999999999999999999999999887665422 222
Q ss_pred -CHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCc
Q 019554 130 -PSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGL 208 (339)
Q Consensus 130 -~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL 208 (339)
+.+.+..|+.++.+|||+++|+.|+.+|..+++++.+|.++|+++.+|+..+|+.+||||++|||..++||||+|||||
T Consensus 238 ~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~rV~~l~eyRk~L~~YL~~KMs~vAPnLa~LIGe~vgARLIShAGsL 317 (498)
T KOG2573|consen 238 VDSEKAQEIIEAAKNSMGQDISPADLENIRKFAERVSDLAEYRKQLSDYLKDKMSSVAPNLAALIGEVVGARLISHAGSL 317 (498)
T ss_pred CcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHhcccc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchH
Q 019554 209 SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGR 288 (339)
Q Consensus 209 ~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~ 288 (339)
++|||.||||+|+|||||++|++++|+.+||+||+||||.+|..+....+|+++|.||+||+||+|||||++.|+..||+
T Consensus 318 tNLaK~PASTvQIlGAEKALFRALKtrgnTPKYGLIyhSsfigrA~akNKGRISRyLAnKCSIAsrIDcFse~pts~fGe 397 (498)
T KOG2573|consen 318 TNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIYHSSFIGRAGAKNKGRISRYLANKCSIASRIDCFSEDPTSVFGE 397 (498)
T ss_pred chhhhCcchHHHHhhhHHHHHHHHHhcCCCCCceeEeecchhhhhhccccchHHHHHHhhccHHHhhhhcccCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 019554 289 SFREEIHKKIEKWQE 303 (339)
Q Consensus 289 ~~re~i~~ki~k~~e 303 (339)
.||+++++||+.+..
T Consensus 398 ~Lr~qVEeRL~fy~t 412 (498)
T KOG2573|consen 398 KLREQVEERLEFYET 412 (498)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998863
No 5
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-64 Score=486.24 Aligned_cols=255 Identities=27% Similarity=0.463 Sum_probs=247.7
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCcccccccCCHH
Q 019554 53 GMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSA 132 (339)
Q Consensus 53 ~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~iL~~~ 132 (339)
...+..+.-+.+|+|++.|++++|+|+|.+.||+|+||+||||||.+++.++..|+++|+.+|++.+....+|++||+..
T Consensus 148 Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEwYGwHFPEL~kii~dn~~Yak~vk~mG~r~~~a~~d~sEil~ee 227 (498)
T KOG2572|consen 148 KLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEWYGWHFPELAKIIQDNYAYAKLVKAMGVRCNAASLDFSEILPEE 227 (498)
T ss_pred hcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHhHhhhhhcccHHhhchHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCccccc
Q 019554 133 IIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALA 212 (339)
Q Consensus 133 ~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~La 212 (339)
.--.+..+|-.|||.++++.|+..|...|++++++.++|.++.+|+.+||..|||||++|||..++||||+|+|+|-+||
T Consensus 228 iE~~~k~aAeiSMgteis~~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGElVGaRlIshaGSL~nLa 307 (498)
T KOG2572|consen 228 IEAELKEAAEISMGTEISDSDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGELVGARLISHAGSLFNLA 307 (498)
T ss_pred HHHHHHhhhhhhhcccccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHH
Q 019554 213 KMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFRE 292 (339)
Q Consensus 213 kmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re 292 (339)
|+|+|+||+|||+|++|++++|...||+||+|||+++|.++||.++||++|.||+|++||+|+|+++++.+|.+|...|.
T Consensus 308 K~p~StIQilGAEKALFrALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~ 387 (498)
T KOG2572|consen 308 KAPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRA 387 (498)
T ss_pred hCChhHHHHHhhHHHHHHHHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 019554 293 EIHKKIEKWQEPPPA 307 (339)
Q Consensus 293 ~i~~ki~k~~epp~~ 307 (339)
.++++|..+.+.-..
T Consensus 388 klE~rlr~lE~r~l~ 402 (498)
T KOG2572|consen 388 KLEKRLRSLEGRDLQ 402 (498)
T ss_pred HHHHHHhhhhccCcc
Confidence 999999999865443
No 6
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins. The function of the domain is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Proteins have been implicated in an expanding variety of functions during pre-mRNA splicing. Molecular cloning has identified genes encoding spliceosomal proteins that potentially act as novel RNA helicases, GTPases, or protein isomerases. Novel protein-protein and protein-RNA interactions that are required for functional spliceosome formation have also been described. Finally, growing evidence suggests that proteins may contribute directly to the spliceosome's active sites [].; PDB: 3GQX_B 3GQU_A 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E 3SIU_B 3SIV_H ....
Probab=100.00 E-value=7.8e-56 Score=386.86 Aligned_cols=149 Identities=51% Similarity=0.813 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccC
Q 019554 156 KTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTA 235 (339)
Q Consensus 156 ~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~ 235 (339)
+|.++|+++++|+++|+.|.+||++||..+|||||+|||+.+||+||++||||.+||+|||||||+||++|++|+||++.
T Consensus 1 ~I~~~~~~~~~L~~~r~~l~~yi~~rm~~iAPNLsaLvG~~vaA~Li~~aGgL~~Lak~Pasniq~lGaeK~~~~~l~~~ 80 (150)
T PF01798_consen 1 NILSACDEVISLSEYRKELLEYIESRMSEIAPNLSALVGSSVAARLISHAGGLENLAKMPASNIQVLGAEKALFRGLKTK 80 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSHHHHHTS-HHHHTTSTCHHHHHHHHCCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCchHHHHHCcHHHHHHHHHcccHHHHHhCCHhhHHHHHhHHHHhHHhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCc-chHHHHHHHHHHHHHhcCC
Q 019554 236 TSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGT-AGRSFREEIHKKIEKWQEP 304 (339)
Q Consensus 236 ~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~-~G~~~re~i~~ki~k~~ep 304 (339)
+.+||+|||||||+||++||++|+||+|+||+||+||||||+|+++++|+ +|.+||++|++||+||+|.
T Consensus 81 ~~~pk~G~i~~~~~V~~~p~~~r~k~~R~lA~K~aLAARiD~~~~~~~~~~~G~~~re~i~~ki~k~~e~ 150 (150)
T PF01798_consen 81 AKTPKYGYIYQSDLVQKAPPKLRGKAARMLAAKCALAARIDAFSESPDGSAFGKKLREEIEKKIEKLQEK 150 (150)
T ss_dssp -SSTSSSGGGGSHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCeeEEecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999995 9999999999999999984
No 7
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=99.84 E-value=1.9e-21 Score=142.13 Aligned_cols=53 Identities=57% Similarity=0.870 Sum_probs=51.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcC
Q 019554 64 LIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGN 116 (339)
Q Consensus 64 lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n 116 (339)
+|++||+++++||+||+.+|+|+|+||++|||||+++++||.+|+++|+.+||
T Consensus 1 ~Ii~~~~l~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~~~~Y~~vV~~i~n 53 (53)
T PF08060_consen 1 LIIQANELLDDIDKEINLLHMRLREWYSWHFPELESLVPNPIDYAKVVKIIGN 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-SHHHHHHHHHHTTS
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHcCCHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999997
No 8
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.51 E-value=17 Score=35.90 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccCCC---CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCC
Q 019554 132 AIIMVVSVTASTTSGK---PLPEDVLQKTIDACDRALA-LDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGG 207 (339)
Q Consensus 132 ~~im~v~~~As~S~G~---~Ls~~~l~~i~~~c~~i~~-L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGg 207 (339)
..++.+++.-.+|-|. +.+++|++++...=+.+++ ..-......+|+..--..+|| .+|+||-.+|...|-..++
T Consensus 227 ~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~~f~~~~~~ef~P-v~AvVGGivaQevIk~isk 305 (331)
T KOG2014|consen 227 YFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELLEFLSLIFTEFAP-VCAVVGGILAQEVIKAISK 305 (331)
T ss_pred eehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHHHHHHhcccccCc-hhhhhhhHhHHHHHHHhhc
Confidence 3455566655566544 4558999888777666666 555566777888888888999 7999999999988876543
No 9
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=57.73 E-value=20 Score=29.61 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc-------Cccc
Q 019554 32 FTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLK-------FPEL 97 (339)
Q Consensus 32 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~-------FPEL 97 (339)
-+--+.||++|..+.. +..+..++.+|||+ .++++|++ +|..+|+-- ||+.
T Consensus 38 QklFldKIREY~~Ksk--s~gGklVD~~Pe~~---------kel~eel~----kL~r~YG~g~~~Dm~kFP~F 95 (99)
T PF05511_consen 38 QKLFLDKIREYNQKSK--SSGGKLVDAGPEYE---------KELNEELE----KLARQYGGGSGVDMTKFPTF 95 (99)
T ss_dssp THHHHHHHHHHHHHHT--TTSS-STT--THHH---------HHHHHHHH----HHHHHHHSS---TTTS-SS-
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCCCCCHHHH---------HHHHHHHH----HHHHHhCCcccccHHhCCCC
Confidence 4456889999954322 12234789999986 35666766 688888765 8875
No 10
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=51.56 E-value=47 Score=27.50 Aligned_cols=62 Identities=18% Similarity=0.399 Sum_probs=41.1
Q ss_pred hhhhHhhhccc-hHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc------c
Q 019554 20 LDNVSKLQKSQ-RFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYR------L 92 (339)
Q Consensus 20 v~~~a~l~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~------~ 92 (339)
|.++|-...+. -.+-.+.||++|..+. ..+..++.+|||+. ++..|++ ++...|+ .
T Consensus 22 v~a~a~nk~~DpIqqlFldKvREy~~ks----~~Gklvds~pe~e~---------eLk~el~----rla~qfg~~~~Dm~ 84 (105)
T KOG4634|consen 22 VTATAFNKELDPIQQLFLDKVREYKKKS----PAGKLVDSDPEYEQ---------ELKEELF----RLAQQFGLANADML 84 (105)
T ss_pred hhhhHHHhhhChHHHHHHHHHHHHHhcC----CCCCCCCCCHHHHH---------HHHHHHH----HHHHHhCccCchhh
Confidence 45555555443 3445678999997763 34577899999863 4566666 5666777 6
Q ss_pred cCcccc
Q 019554 93 KFPELE 98 (339)
Q Consensus 93 ~FPELe 98 (339)
.||+..
T Consensus 85 ~fp~fk 90 (105)
T KOG4634|consen 85 TFPPFK 90 (105)
T ss_pred hCCCCC
Confidence 777754
No 11
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=39.97 E-value=9.5 Score=28.92 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=0.0
Q ss_pred CCCCCCCCCccccccchhhhhhhhhhc
Q 019554 311 KPLPVPDSEPKKKRGGRRLRKMKERKF 337 (339)
Q Consensus 311 k~LP~P~~~~kkkRgGrr~Rk~Ke~~~ 337 (339)
+..|.|+..+. =|++-|||+++|+|.
T Consensus 7 ~~sp~p~~~~~-p~~e~kY~eI~eeFD 32 (64)
T PF12347_consen 7 CDSPEPDIEPS-PRTENKYREINEEFD 32 (64)
T ss_dssp ---------------------------
T ss_pred CCCCCCCcCCC-CchhhHHHHHHHHHH
Confidence 56788887666 788999999999995
No 12
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. It is often found with the transposase IS111A/IS1328/IS1533 family (see IPR002525 from INTERPRO) [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=39.48 E-value=21 Score=28.08 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.3
Q ss_pred hchHHHHHHHHHhCCccccc
Q 019554 193 VGSAVAAKLMGTAGGLSALA 212 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~~La 212 (339)
||+.+|+.|+++.|++.++.
T Consensus 10 ig~~~a~~llaeigd~~rF~ 29 (87)
T PF02371_consen 10 IGPITAATLLAEIGDISRFK 29 (87)
T ss_pred ccHHHHHHHHHHHcCchhcc
Confidence 89999999999999998874
No 13
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=32.97 E-value=1.2e+02 Score=32.52 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=75.0
Q ss_pred CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccCh-HH---------HHHHHHHhcC-----CCCCC
Q 019554 57 EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHP-ID---------YARVVKKIGN-----EMDLT 121 (339)
Q Consensus 57 ~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~-~~---------Y~~~V~~i~n-----~~d~~ 121 (339)
+...+|..|..+..= +.+.-.+.-.+--.|-.+||+|.+---|. +| =...|+.|+. ++.+.
T Consensus 20 ~~~~~y~~il~~~kg----~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG----SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp GGHHHHHHHHHGGGS-----HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred cCHHHHHHHHHHccC----CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 455699999999884 35566777788899999999998643322 11 1223333332 01111
Q ss_pred cc-c-ccccCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhccCCChhH----
Q 019554 122 LV-D-LEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRAL----ALDAAKKKVLDFVESRMSYIAPNLSA---- 191 (339)
Q Consensus 122 ~~-~-L~~iL~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~----~L~~~k~~i~~yv~srm~~iAPNLsa---- 191 (339)
++ | |.++|..+....+.+. +.+.-.-+..+-...+..+++++. .=+..|++++.||..+|..+.+++-.
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v-~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E 174 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAV-KNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE 174 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred HHHHHHHHHHhcccHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence 11 1 3333422211111100 001001111122233445666665 33457999999999999998887755
Q ss_pred -----------HhchHHHHH---HHHHhCCccc
Q 019554 192 -----------IVGSAVAAK---LMGTAGGLSA 210 (339)
Q Consensus 192 -----------LvG~~~aAr---Li~~aGgL~~ 210 (339)
++...++.. +|...+++.-
T Consensus 175 ~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 175 MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 245555554 4555556555
No 14
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=28.15 E-value=33 Score=26.34 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=14.9
Q ss_pred HHHHHHhcccCccccccc
Q 019554 84 NFIRDKYRLKFPELESLV 101 (339)
Q Consensus 84 ~~lrd~Y~~~FPELesLv 101 (339)
..+||.|+..+|||-+-.
T Consensus 26 e~V~dfYs~~YPeLttA~ 43 (66)
T TIGR03738 26 EQVRDFYSAQYPELLNAE 43 (66)
T ss_pred HHHHHHHhccCchheeee
Confidence 368999999999997643
No 15
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=28.03 E-value=1.3e+02 Score=24.23 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccc
Q 019554 57 EDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLK 93 (339)
Q Consensus 57 ~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~ 93 (339)
.++.||+-++. ..+..--+..++.+...++.+|+.+
T Consensus 47 ~~S~eYr~lv~-~~l~~~r~~~l~Ll~~~L~r~y~~K 82 (90)
T PF12247_consen 47 GDSDEYRKLVT-ESLLPLRCQALNLLTQRLHRYYQIK 82 (90)
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34899999986 6666667899999999999999865
No 16
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=24.58 E-value=4.4e+02 Score=22.38 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.7
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHh
Q 019554 140 TASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTA 205 (339)
Q Consensus 140 ~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~a 205 (339)
.+..+.+.++++.+-+........|++-+ ..|.+.++.||.. |+.++|...--+-+..|
T Consensus 47 l~~~~~~~~l~~~~q~~~~~lL~~IL~nd---a~Ir~Llq~rl~e----L~~li~~~~rq~~l~~a 105 (121)
T PRK10548 47 IAHLTIPPDISTVMQEQLRPMLRQILDNE---AELKQLLQQRMDE----LSSLIGQSTRQKSVNSA 105 (121)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHhHHHHHHHHH
Confidence 33445677899998888887777777744 4677788899999 89999999888776655
No 17
>PRK15058 cytochrome b562; Provisional
Probab=24.51 E-value=3.3e+02 Score=23.56 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=46.5
Q ss_pred chhhhHhhhccchHHHHHHHHHHHHhcC--CCCCCCCCCCCCChhHHHHH-HHHHhHHHHHHHHHHHH------------
Q 019554 19 DLDNVSKLQKSQRFTDIMQKVEAALQNG--SDISNHGMVLEDDPEYQLIV-DCNVLSVDIENEIVIIH------------ 83 (339)
Q Consensus 19 ~v~~~a~l~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~eY~lIv-~~n~l~~eId~eI~~~h------------ 83 (339)
..+.+++=.+.+.++.-+...+....+. ..+....+..+++||.+.-. -.+.|+++||.-...+.
T Consensus 35 ~~k~~~~A~~a~~~k~al~~mr~aa~~Ak~~~P~kl~~k~~ds~e~K~Y~~G~d~Li~qID~a~~la~~GkL~eAK~~a~ 114 (128)
T PRK15058 35 NLKVVEKTDNAAEVKDALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGKVKEAQAAAE 114 (128)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhccCCchhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455555556666777777777765431 22334445567888874433 35778888886554432
Q ss_pred --HHHHHHhcccC
Q 019554 84 --NFIRDKYRLKF 94 (339)
Q Consensus 84 --~~lrd~Y~~~F 94 (339)
.-+|+-|+.+|
T Consensus 115 ~l~~lR~eYHkky 127 (128)
T PRK15058 115 QLKTTRNAYHKKY 127 (128)
T ss_pred HHHHHHHHHHHhc
Confidence 35678887776
No 18
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=23.99 E-value=44 Score=25.70 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.8
Q ss_pred hchHHHHHHHHHhCCcccccC
Q 019554 193 VGSAVAAKLMGTAGGLSALAK 213 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~~Lak 213 (339)
||+.+|.+||...|++.++-.
T Consensus 30 iG~k~A~~ll~~~~~~~~~~~ 50 (75)
T cd00080 30 IGPKTALKLLKEYGSLENLLE 50 (75)
T ss_pred ccHHHHHHHHHHhCCHHHHHH
Confidence 899999999999999987744
No 19
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=21.69 E-value=45 Score=35.11 Aligned_cols=52 Identities=29% Similarity=0.350 Sum_probs=37.8
Q ss_pred HhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcceeee
Q 019554 192 IVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQ 246 (339)
Q Consensus 192 LvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~ 246 (339)
|||+-+|+ |+.|--|-+=|+||..||.+|-+....--++- +.+.|..||+..
T Consensus 7 ivGsGiAs--LAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld-g~g~~~~GYv~R 58 (500)
T PF06100_consen 7 IVGSGIAS--LAAAVFLIRDAKMPGENIHILEELDVPGGSLD-GAGDPENGYVIR 58 (500)
T ss_pred EECCCHHH--HHhhhhhhccCCCCccceEEEeCCCCCCCccc-CCCCCCCCeeec
Confidence 68888886 56677888999999999999965543322222 345689999873
No 20
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=21.44 E-value=1.4e+02 Score=22.32 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhc
Q 019554 156 KTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVG 194 (339)
Q Consensus 156 ~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG 194 (339)
.|+.+.+..+.++-.|+++.+++...- .|-|.++.+|=
T Consensus 3 ~Vq~lIE~Cl~~yMsk~E~v~~L~~~a-~I~P~~T~~VW 40 (57)
T TIGR01589 3 LVQNRIETCIQGYMSKEETVSFLFENA-GISPKFTRFVW 40 (57)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHc-CCCchhHHHHH
Confidence 467778888999999999999988877 78999888753
No 21
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=21.35 E-value=42 Score=25.66 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=14.1
Q ss_pred HHHHHhcccCcccccc
Q 019554 85 FIRDKYRLKFPELESL 100 (339)
Q Consensus 85 ~lrd~Y~~~FPELesL 100 (339)
.+++.|+..||||-+-
T Consensus 28 ~V~~~ya~~YPeL~tA 43 (65)
T PF14454_consen 28 EVRDFYAAQYPELTTA 43 (65)
T ss_pred HHHHHHhhhChhhhee
Confidence 5899999999999764
Done!