Query 019554
Match_columns 339
No_of_seqs 201 out of 665
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 03:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozb_B U4/U6 small nuclear rib 100.0 1.5E-88 5.2E-93 638.3 21.4 253 51-303 6-260 (260)
2 3icx_A PRE mRNA splicing prote 100.0 4.7E-84 1.6E-88 604.4 19.4 244 61-307 3-247 (255)
3 3pla_A NOP5, PRE mRNA splicing 100.0 3.4E-80 1.2E-84 606.0 18.3 269 30-307 111-380 (388)
4 2nnw_A NOP5/NOP56 related prot 100.0 2.4E-79 8.2E-84 600.1 20.1 264 29-302 111-376 (376)
5 1nt2_B Conserved hypothetical 100.0 3E-62 1E-66 456.8 7.0 207 28-303 46-257 (258)
6 3gqu_A NOP5P protein; RNA bind 100.0 3.8E-51 1.3E-55 358.6 3.3 132 170-304 18-149 (169)
7 3id6_A NOP5, PRE mRNA splicing 100.0 2.7E-34 9.1E-39 270.7 14.8 132 56-187 131-263 (268)
8 4fbj_A CIF, hypothetical prote 84.6 0.34 1.2E-05 44.0 1.7 56 202-258 99-165 (261)
9 3efy_A CIF (cell cycle inhibit 79.9 0.43 1.5E-05 41.5 0.5 50 209-258 44-98 (195)
10 4f8c_A Cycle inhibiting factor 74.6 0.73 2.5E-05 42.0 0.5 50 209-258 138-192 (275)
11 2cly_C ATP synthase coupling f 70.5 8.1 0.00028 29.4 5.3 50 33-98 10-63 (77)
12 3eir_A Putative ATP/GTP bindin 70.4 1.1 3.7E-05 40.8 0.5 50 209-258 142-196 (281)
13 1kea_A Possible G-T mismatches 31.8 2.1E+02 0.0073 24.9 8.9 17 193-209 123-139 (221)
14 2a1j_A DNA repair endonuclease 30.0 21 0.00073 25.4 1.6 34 193-226 12-46 (63)
15 3d85_C IL-23 subunit, interleu 23.4 33 0.0011 29.1 1.7 22 257-278 142-163 (178)
16 2a1j_B DNA excision repair pro 21.0 39 0.0013 25.4 1.6 28 193-220 40-67 (91)
17 1z00_A DNA excision repair pro 20.4 32 0.0011 25.8 1.0 34 193-226 27-63 (89)
No 1
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=100.00 E-value=1.5e-88 Score=638.31 Aligned_cols=253 Identities=54% Similarity=0.862 Sum_probs=233.4
Q ss_pred CCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCC--ccccccc
Q 019554 51 NHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLT--LVDLEGL 128 (339)
Q Consensus 51 ~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~--~~~L~~i 128 (339)
...++++++|||++|+++|+++++||+||+.+|+||||||+||||||++||+||.+|+++|+.|||+.+++ ..+|.++
T Consensus 6 ~~~~~~e~~~eY~~Ivqa~~lld~idkein~~~~rlre~Y~~~FPEL~~lv~~~~~Y~~~V~~ig~~~~~~~~~~~L~~i 85 (260)
T 2ozb_B 6 EVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQI 85 (260)
T ss_dssp ------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTCGGGCTTCTTGGGT
T ss_pred cccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccHHHHhcCHHHHHHHHHHhCCchhhccchHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999998876 4469999
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCc
Q 019554 129 LPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGL 208 (339)
Q Consensus 129 L~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL 208 (339)
|+++++|+|+++|++|+|.++|++|+..|..+|+++++|+++|++|.+||++||..+|||||+|||+.+|||||++||||
T Consensus 86 L~~~~~~~i~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG~~vaArLI~~AGsL 165 (260)
T 2ozb_B 86 LTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGL 165 (260)
T ss_dssp SCHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSH
T ss_pred cCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhCcHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchH
Q 019554 209 SALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGR 288 (339)
Q Consensus 209 ~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~ 288 (339)
++||||||||||+|||+|++|+||++++.+|||||||||++||++||++||||+|+||+||+||||||+|+++++|++|.
T Consensus 166 ~~Lak~PastiqiLGaeKalf~~l~t~~~~pk~G~Iy~~~~V~~~p~~~rgk~~R~lA~K~alAaRiD~~~~~~~~~~G~ 245 (260)
T 2ozb_B 166 TNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGY 245 (260)
T ss_dssp HHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHHHH
T ss_pred HHHhhCCcHHHHHhcccHHHHHhhccCCCCCCeeeEeCCHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 019554 289 SFREEIHKKIEKWQE 303 (339)
Q Consensus 289 ~~re~i~~ki~k~~e 303 (339)
+||++|++||++|+|
T Consensus 246 ~lr~~ie~rl~~~~e 260 (260)
T 2ozb_B 246 ELKDEIERKFDKWQE 260 (260)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999997
No 2
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.7e-84 Score=604.41 Aligned_cols=244 Identities=30% Similarity=0.441 Sum_probs=217.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCccccccc-CCHHHHHHHHH
Q 019554 61 EYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGL-LPSAIIMVVSV 139 (339)
Q Consensus 61 eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~i-L~~~~im~v~~ 139 (339)
.+.+|+|||+++++||+|||.+|+||||||+||||||++||+||.+|+++|+.+||+.+++..+|+++ ++.+++++|++
T Consensus 3 ~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~~~~~~~~l~~l~l~~~~~~~i~~ 82 (255)
T 3icx_A 3 RDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILD 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSGGGCCHHHHHTTTCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCCCCCChhhHHHccCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCCCchhH
Q 019554 140 TASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNV 219 (339)
Q Consensus 140 ~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~LakmPa~nI 219 (339)
+|++|+|.+||++|+..|..+|+++++|+++|++|.+||++||..+|||||+|||+.+|||||++||||++|||||||||
T Consensus 83 aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~vaArLIs~AGgL~~LAk~PAstI 162 (255)
T 3icx_A 83 AAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTI 162 (255)
T ss_dssp HHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHHHHHHHHHHHSSHHHHTTSCHHHH
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccHHHHHHHHHcCCHHHHhhCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHHHHHHH
Q 019554 220 QLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 299 (339)
Q Consensus 220 q~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i~~ki~ 299 (339)
|+|||+|++|+||++++.+|||||||||++||++||++|||++|+||+||+||||||+|++ ..+|.+||++|++||+
T Consensus 163 qiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~g---~~~G~~lre~ie~ri~ 239 (255)
T 3icx_A 163 QVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSG---RFIGDQLNEQLKKRID 239 (255)
T ss_dssp TTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999973 3469999999999999
Q ss_pred HhcCCCCC
Q 019554 300 KWQEPPPA 307 (339)
Q Consensus 300 k~~epp~~ 307 (339)
+|+||...
T Consensus 240 kl~e~~~~ 247 (255)
T 3icx_A 240 EIKEKFAQ 247 (255)
T ss_dssp HHHTTC--
T ss_pred HHhCcccc
Confidence 99999764
No 3
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=100.00 E-value=3.4e-80 Score=605.95 Aligned_cols=269 Identities=27% Similarity=0.415 Sum_probs=247.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHH
Q 019554 30 QRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYAR 109 (339)
Q Consensus 30 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~ 109 (339)
..|...+..+.+...+.. .....+..+.+|+|||+++++||+|||.+|+|+||||+||||||++||+||.+|++
T Consensus 111 ~d~~~~~~~l~~~~sr~k------vk~~~~k~D~~Ivqai~lld~iDkein~~~~rvrewY~~hFPEL~~iV~d~~~Yak 184 (388)
T 3pla_A 111 EDYYNFLHELSLEYTRRK------LRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYAT 184 (388)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhcCCHHHHHH
Confidence 345555555555443311 12334457899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCccccccc-CCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 019554 110 VVKKIGNEMDLTLVDLEGL-LPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAPN 188 (339)
Q Consensus 110 ~V~~i~n~~d~~~~~L~~i-L~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAPN 188 (339)
+|+.+||+.+++..+|+++ ++.+++++|+++|++|+|.+++++|+..|..+|+++++|+++|++|.+||++||..+|||
T Consensus 185 ~V~~ignr~~~~~~~l~~l~l~~~~~~~I~~aA~~SmG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPN 264 (388)
T 3pla_A 185 IVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPN 264 (388)
T ss_dssp HHHHTCSGGGCCHHHHHTTTCCHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHhcCcccCChhhHhhcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999998899998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhhh
Q 019554 189 LSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAK 268 (339)
Q Consensus 189 LsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~K 268 (339)
||+|||+.+|||||++||||++||||||||||+|||+|++|+||+|++.+|||||||||++||++||++||||+|+||+|
T Consensus 265 LsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalfr~Lkt~~~tPk~G~Iy~s~~V~~ap~~~rgKiaR~LAaK 344 (388)
T 3pla_A 265 VTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAK 344 (388)
T ss_dssp HHHHHHHHHHHHHHHHHSSHHHHHTSCHHHHTTSSCHHHHHHHHHHTCCCCSCSGGGGSHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhhCCHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCCCcchHHHHHHHHHHHHHhcCCCCC
Q 019554 269 STLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEPPPA 307 (339)
Q Consensus 269 ~aLAARvD~~~~~~~g~~G~~~re~i~~ki~k~~epp~~ 307 (339)
|+||||||+|++ ..+|.+||++|++||++|+||...
T Consensus 345 ~aLAARiD~~~g---~~~G~~lreeie~ri~kl~e~~~~ 380 (388)
T 3pla_A 345 LAIAARVDAFSG---RFIGDQLNEQLKKRIDEIKEKFAQ 380 (388)
T ss_dssp HHHHHHHHHTCC---CCCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHhhcccCC---cccCHHHHHHHHHHHHHHhCcccc
Confidence 999999999973 357999999999999999999764
No 4
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=100.00 E-value=2.4e-79 Score=600.05 Aligned_cols=264 Identities=26% Similarity=0.380 Sum_probs=236.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHH
Q 019554 29 SQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYA 108 (339)
Q Consensus 29 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~ 108 (339)
...+...+..+.+...+.. .....++.|++|+|+|+++++||+|||.+|+||||||+||||||++||+||.+|+
T Consensus 111 ~~d~~~~~~~l~h~~sr~K------vk~~~~k~D~~Iiqai~llddlDkeIn~~~~rlrewY~~~FPEL~~lV~d~~~Y~ 184 (376)
T 2nnw_A 111 GENWFEEYYKVGVALTRMR------IQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYV 184 (376)
T ss_dssp CSSHHHHHHHHHHHHHHHH------SCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhh------hccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHhhcCCHHHHH
Confidence 3456777777776655321 3356778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccccccc-CCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 019554 109 RVVKKIGNEMDLTLVDLEGL-LPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAP 187 (339)
Q Consensus 109 ~~V~~i~n~~d~~~~~L~~i-L~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAP 187 (339)
++|+.+||+.+++..+|.++ ++++++|+|+++|++|+|.++|++|++.|..+|+++++|+++|++|.+||++||..+||
T Consensus 185 k~V~~ig~~~~l~~~~L~~i~l~~~~~~~I~~aA~~S~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAP 264 (376)
T 2nnw_A 185 AFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAP 264 (376)
T ss_dssp HHHHHTCSGGGCCSHHHHHTTCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHhCCccccCHhhHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988889999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCccccCCCchhhhhHHHHhhh
Q 019554 188 NLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAA 267 (339)
Q Consensus 188 NLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~lVq~~p~~~r~ka~R~la~ 267 (339)
|||+|||+.+|||||++||||++||||||||||+|||+|++|+||+|++.+|||||||||++||++||++||||+|+||+
T Consensus 265 NLsaLvG~~vaArLIs~AGgL~~LAK~PAstIQiLGAeKalf~~lkt~~~tPk~G~Iy~s~~V~~ap~~~kgKiaR~LAa 344 (376)
T 2nnw_A 265 NLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAG 344 (376)
T ss_dssp HHHHHHCHHHHHHHHHHHTSHHHHHHSCHHHHHTTTCC-------------CCCCGGGGSHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHhChHHHHHHHHHhCCHHHHhhCChHHHHHhccchhhHHHhccCCCCCCceEEeCCHhhccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcccCCCCCCCCcc-hHHHHHHHHHHHHHhc
Q 019554 268 KSTLAARVDSTRGDPSGTA-GRSFREEIHKKIEKWQ 302 (339)
Q Consensus 268 K~aLAARvD~~~~~~~g~~-G~~~re~i~~ki~k~~ 302 (339)
||+||||||+|+ |++ |.++|++|++||++|.
T Consensus 345 K~aLAARiD~~~----g~~~G~~lre~ie~rl~~ik 376 (376)
T 2nnw_A 345 KLAIAARVDYFS----GEYIAEELKKELEARIREIK 376 (376)
T ss_dssp HHHHHHHHHHHT----CCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcC----CcccCHHHHHHHHHHHHHhC
Confidence 999999999994 566 9999999999999984
No 5
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1
Probab=100.00 E-value=3e-62 Score=456.78 Aligned_cols=207 Identities=25% Similarity=0.378 Sum_probs=173.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHH
Q 019554 28 KSQRFTDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDY 107 (339)
Q Consensus 28 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y 107 (339)
+...|.+.|..+.+...+.. ...+.+++|++|+++|+++++||+|||.+|+||||||+|
T Consensus 46 ~~~~y~~~l~~~~~~~sr~k------vk~~~~~~D~~Iiqai~lld~idkein~~~~rvrewY~~--------------- 104 (258)
T 1nt2_B 46 LGKDYYRILRKTALAVSEKM------VEKELRREDRYVVALVKALEEIDESINMLNEKLEDIRAV--------------- 104 (258)
T ss_dssp SCSTHHHHHHHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHTT---------------
T ss_pred CHHHHHHHHHHHHHHHHHHH------HhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 44678888888877554311 224556799999999999999999999999999999986
Q ss_pred HHHHHHhcCCCCCCcccccccCCHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 019554 108 ARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAP 187 (339)
Q Consensus 108 ~~~V~~i~n~~d~~~~~L~~iL~~~~im~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAP 187 (339)
.+| ++++ .+|+++++|+++|++|.+||++||..|||
T Consensus 105 ----------------------------------~~S---~ise-------~~~~~v~~L~~~r~~l~~yl~srM~~iAP 140 (258)
T 1nt2_B 105 ----------------------------------KES---EITE-------KFEKKIRELRELRRDVEREIEEVMEKIAP 140 (258)
T ss_dssp ----------------------------------CCC---TTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred ----------------------------------CCC---cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 012 4443 89999999999999999999999999999
Q ss_pred ChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhccccccc---ccC--CCCCCcceeeeCccccCCCchhhhhHH
Q 019554 188 NLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGF---STA--TSQFRVGYLEQTEIFQSTPPPLRMRAC 262 (339)
Q Consensus 188 NLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~---s~~--~~~p~~G~iy~s~lVq~~p~~~r~ka~ 262 (339)
|||+|||+.+|||||++||||++||||||||||+|||+|++|+|| +++ +.+|||||||||++||++||++|||++
T Consensus 141 NLsaLvG~~vaArLI~~AGgL~~LAk~PAstIqiLGAeKalf~~l~~~~t~~~~~~pk~G~Iy~s~~V~~ap~~~rgK~a 220 (258)
T 1nt2_B 141 NMTELVGAKVAAKLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLPKAKRGKMA 220 (258)
T ss_dssp HHHHHHCHHHHHHHHHHHCSHHHHHTCCHHHHTTSSCC--------------------CCGGGGSHHHHTSCSSSSHHHH
T ss_pred cHHHHhCcHHHHHHHHHhCCHHHHhhCCHHHHHHhccchHHHhhhhccccccCCCCCCcceEecCHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 888 899999999999999999999999999
Q ss_pred HHhhhhHHhhhcccCCCCCCCCcchHHHHHHHHHHHHHhcC
Q 019554 263 RLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 303 (339)
Q Consensus 263 R~la~K~aLAARvD~~~~~~~g~~G~~~re~i~~ki~k~~e 303 (339)
|+||+||+||||||+|+ |++|.+||++|++||++|+|
T Consensus 221 R~LAaK~aLAARiD~~~----g~~G~~lre~ie~rl~k~~e 257 (258)
T 1nt2_B 221 RFLAAKLAIAAKIDYFR----GEIDESLYESIRRRYEELRR 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHT----CSCCTHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhhC----CcccHHHHHHHHHHHHHHhh
Confidence 99999999999999995 78999999999999999998
No 6
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B
Probab=100.00 E-value=3.8e-51 Score=358.55 Aligned_cols=132 Identities=31% Similarity=0.477 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhccCCChhHHhchHHHHHHHHHhCCcccccCCCchhHhhhhhhcccccccccCCCCCCcceeeeCcc
Q 019554 170 AKKKVLDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEI 249 (339)
Q Consensus 170 ~k~~i~~yv~srm~~iAPNLsaLvG~~~aArLi~~aGgL~~LakmPa~nIq~LGa~K~~~~~~s~~~~~p~~G~iy~s~l 249 (339)
.|..|.+||++||..||||||+|||+.+||+||++||||.+||||||||||+|||+|++|+||++++.+|||||||||++
T Consensus 18 ~~~~L~~Yl~srM~~iAPNLsaLvG~~vaArLI~~AGgL~~LAK~PAsnIqvLGAeKalf~~l~t~~~~pk~G~Iy~s~l 97 (169)
T 3gqu_A 18 GAGGLEDYIDKAMDDVAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPA 97 (169)
T ss_dssp --CCHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHTSHHHHHTCCSHHHHTSCC----------------CCGGGGSHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHhChHHHHHHHHHhCCHHHHhhCCHHHHHHHhhhhHHHHHHhcCCCCCCCCEEEeCHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhhhhHHHHhhhhHHhhhcccCCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 019554 250 FQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEP 304 (339)
Q Consensus 250 Vq~~p~~~r~ka~R~la~K~aLAARvD~~~~~~~g~~G~~~re~i~~ki~k~~ep 304 (339)
|+++|+++|+|++|+||+||+||||||+|++ ..+|.+|+++|++||++|+|.
T Consensus 98 V~~~p~~~rgK~aR~LAaK~aLAARiD~~~g---~~~G~~lreeie~riekl~e~ 149 (169)
T 3gqu_A 98 INRSPWWQRGKIARALAGKLAIAARVDYFSG---EYIAEELKKELEARIKEIKEK 149 (169)
T ss_dssp HHTSCTTTHHHHHHHHHHHHHHHHHHHHHTC---CCCCTTHHHHHHHHHHHCCCS
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHhhcccCC---cccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999974 357999999999999998864
No 7
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-34 Score=270.74 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=124.3
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccCccccccccChHHHHHHHHHhcCCCCCCccccccc-CCHHHH
Q 019554 56 LEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGL-LPSAII 134 (339)
Q Consensus 56 ~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~~FPELesLv~~~~~Y~~~V~~i~n~~d~~~~~L~~i-L~~~~i 134 (339)
...+..+++|+|||+++++||+|||.+|+||||||+||||||++||+||.+|+++|+.+||+.+++..+|++| ++++++
T Consensus 131 ~~~~k~D~mIIQai~llDdlDkeiN~~~mRvREWY~~hFPEL~kiV~d~~~Yak~V~~ig~r~~l~~~~l~~i~l~~~~~ 210 (268)
T 3id6_A 131 SAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRI 210 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCCHHHHHHHHHHHCSTTSCCHHHHGGGTCCHHHH
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHhccCHHHHHHHHHHhCCcccCCcccHhhcCCCHHHH
Confidence 3455689999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 019554 135 MVVSVTASTTSGKPLPEDVLQKTIDACDRALALDAAKKKVLDFVESRMSYIAP 187 (339)
Q Consensus 135 m~v~~~As~S~G~~Ls~~~l~~i~~~c~~i~~L~~~k~~i~~yv~srm~~iAP 187 (339)
+.|+++|++|+|.++|+.|+..|..+|+++++|.++|++|.+||++||..+|-
T Consensus 211 ~~I~~aA~~SmG~~ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~~~ 263 (268)
T 3id6_A 211 NRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAH 263 (268)
T ss_dssp HHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999874
No 8
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=84.61 E-value=0.34 Score=43.97 Aligned_cols=56 Identities=20% Similarity=0.414 Sum_probs=39.6
Q ss_pred HHHhCCc------ccccCCCchhHhhhhhhccccc-----ccccCCCCCCcceeeeCccccCCCchhh
Q 019554 202 MGTAGGL------SALAKMPACNVQLLGAKKKNLA-----GFSTATSQFRVGYLEQTEIFQSTPPPLR 258 (339)
Q Consensus 202 i~~aGgL------~~LakmPa~nIq~LGa~K~~~~-----~~s~~~~~p~~G~iy~s~lVq~~p~~~r 258 (339)
++.+|.| ++|+.||||+=-|+=-+-.-+- .+-+.++ +..|||||||+=+++-|.+|
T Consensus 99 ~~Qt~~l~~~~faE~l~~L~s~kNyV~~VNDgrLGH~flIDiPa~~~-~r~ayiyQSDLG~Galp~lr 165 (261)
T 4fbj_A 99 MAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQ-ETVGYIYQSDLGQGALPPLK 165 (261)
T ss_dssp HHHHSCBCHHHHHHHGGGSCTTCEEEEEEEETTTTEEEEEEECCCSS-CCEEEEECCBCSCSSSCCBC
T ss_pred hhhhcccchHHHHHHHhhhhcccCEEEEEcCCCcceeEEEecCCCCC-CcceEEEecccCCCCCccee
Confidence 4667888 6789999998666544332222 2444445 99999999999999877654
No 9
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=79.89 E-value=0.43 Score=41.50 Aligned_cols=50 Identities=22% Similarity=0.384 Sum_probs=35.9
Q ss_pred ccccCCCchhHhhhhhhcccc-----cccccCCCCCCcceeeeCccccCCCchhh
Q 019554 209 SALAKMPACNVQLLGAKKKNL-----AGFSTATSQFRVGYLEQTEIFQSTPPPLR 258 (339)
Q Consensus 209 ~~LakmPa~nIq~LGa~K~~~-----~~~s~~~~~p~~G~iy~s~lVq~~p~~~r 258 (339)
++|+.||||+=-|+=-+-.-+ -.+-+.++.+..|||||||+=+++-|.+|
T Consensus 44 E~l~~l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~lr 98 (195)
T 3efy_A 44 ERLSCMPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRKLR 98 (195)
T ss_dssp HHHHTCCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCcccccee
Confidence 467889999766654433222 23556678899999999999998877554
No 10
>4f8c_A Cycle inhibiting factor; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.95A {Yersinia pseudotuberculosis}
Probab=74.58 E-value=0.73 Score=42.01 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=36.0
Q ss_pred ccccCCCchhHhhhhhhcccc-----cccccCCCCCCcceeeeCccccCCCchhh
Q 019554 209 SALAKMPACNVQLLGAKKKNL-----AGFSTATSQFRVGYLEQTEIFQSTPPPLR 258 (339)
Q Consensus 209 ~~LakmPa~nIq~LGa~K~~~-----~~~s~~~~~p~~G~iy~s~lVq~~p~~~r 258 (339)
++|+.||||+=-|+=-+-.-+ -.+-+.++.+..|||||||+=+++-|.+|
T Consensus 138 E~l~~L~s~KnyV~~VNDgrLGH~flIDiPa~~n~~r~ayiyQSDLG~Galp~lr 192 (275)
T 4f8c_A 138 ERLASLPAHKNFILRVNDGGLGHAYVIDFPATTNPSRDAFLYQSDLGEGVTREVR 192 (275)
T ss_dssp HHHHTCCTTSEEEEEEEETTTTEEEEEEECCCSSSSCEEEEECCBCCCSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCCCCccee
Confidence 467889999766554333222 23556678899999999999999877665
No 11
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=70.53 E-value=8.1 Score=29.43 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc----cCcccc
Q 019554 33 TDIMQKVEAALQNGSDISNHGMVLEDDPEYQLIVDCNVLSVDIENEIVIIHNFIRDKYRL----KFPELE 98 (339)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~eY~lIv~~n~l~~eId~eI~~~h~~lrd~Y~~----~FPELe 98 (339)
+=.+.||++|..+.. ..++.++.+|||+ .++++|++ +|...|+- .||+..
T Consensus 10 qLFldKIREYk~Ks~---~~G~lVD~~Pe~~---------kel~~el~----kL~~~YGggDm~kFP~Fk 63 (77)
T 2cly_C 10 KLFVDKIREYRTKRQ---TSGGPVDAGPEYQ---------QDLDRELF----KLKQMYGKADMNTFPNFT 63 (77)
T ss_dssp HHHHHHHHHHHHHHT---CCSSSSSCCTHHH---------HHHHHHHH----HHHHHHCSSCTTSCCCCC
T ss_pred HHHHHHHHHHHHhcc---cCCCCCCCCHHHH---------HHHHHHHH----HHHHHHCcchHhhCCCCC
Confidence 345889999976632 2367899999986 35667776 68888874 677653
No 12
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=70.36 E-value=1.1 Score=40.83 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=32.6
Q ss_pred ccccCCCchhHhhhhhhcccc-----cccccCCCCCCcceeeeCccccCCCchhh
Q 019554 209 SALAKMPACNVQLLGAKKKNL-----AGFSTATSQFRVGYLEQTEIFQSTPPPLR 258 (339)
Q Consensus 209 ~~LakmPa~nIq~LGa~K~~~-----~~~s~~~~~p~~G~iy~s~lVq~~p~~~r 258 (339)
++|+.||||+=-|+=-+-.-+ -.+-+.++.+..|||||||+=+++-|.+|
T Consensus 142 E~l~~L~s~KNyV~~VNDgrLGH~flIDiPa~~~~~r~ayiYQSDLG~Galp~lr 196 (281)
T 3eir_A 142 EHVNTLDSHKNYVVIVNDGRLGHKFLIDLPALTQGPRTAYIIQSDLGGGALPAVR 196 (281)
T ss_dssp HHHTTSCTTSEEEEEEEETTTTEEEEEEECCC----CCBEEECCBCCSSSSCCBC
T ss_pred HHHhhhhcccCEEEEEcCCCcceeEEEeccCCCCCCcceEEEecccCCCcCccee
Confidence 467889999766554333222 23556667789999999999999877665
No 13
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=31.84 E-value=2.1e+02 Score=24.91 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=15.5
Q ss_pred hchHHHHHHHHHhCCcc
Q 019554 193 VGSAVAAKLMGTAGGLS 209 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~ 209 (339)
||+-||.-++..++|..
T Consensus 123 IG~~TA~~il~~~~~~~ 139 (221)
T 1kea_A 123 VGKYTCAAVMCLAFGKK 139 (221)
T ss_dssp CCHHHHHHHHHHTTCCC
T ss_pred CcHHHHHHHHHHhcCCC
Confidence 99999999999998875
No 14
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=30.04 E-value=21 Score=25.44 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=29.3
Q ss_pred hchHHHHHHHHHhCCcccccCCCchhH-hhhhhhc
Q 019554 193 VGSAVAAKLMGTAGGLSALAKMPACNV-QLLGAKK 226 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~~LakmPa~nI-q~LGa~K 226 (339)
||+...-+|+.+.|++.++..++--.+ .++|.+.
T Consensus 12 IG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig~~~ 46 (63)
T 2a1j_A 12 VNAKNCRSLMHHVKNIAELAALSQDELTSILGNAA 46 (63)
T ss_dssp CCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcCchH
Confidence 899999999999999999999998777 4566544
No 15
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=23.39 E-value=33 Score=29.05 Aligned_cols=22 Identities=41% Similarity=0.407 Sum_probs=19.6
Q ss_pred hhhhHHHHhhhhHHhhhcccCC
Q 019554 257 LRMRACRLLAAKSTLAARVDST 278 (339)
Q Consensus 257 ~r~ka~R~la~K~aLAARvD~~ 278 (339)
+|-|+.|-+-|-+++||||=+.
T Consensus 142 lr~kilrslqafvavaarvfah 163 (178)
T 3d85_C 142 LRFKILRSLQAFVAVAARVFAH 163 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999998544
No 16
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=21.04 E-value=39 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=23.2
Q ss_pred hchHHHHHHHHHhCCcccccCCCchhHh
Q 019554 193 VGSAVAAKLMGTAGGLSALAKMPACNVQ 220 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~~LakmPa~nIq 220 (339)
||+.+|.+|+...|++.+|...+...++
T Consensus 40 IG~~~A~~Ll~~fgs~~~l~~as~~eL~ 67 (91)
T 2a1j_B 40 VNKTDSQTLLTTFGSLEQLIAASREDLA 67 (91)
T ss_dssp CCHHHHHHHHHHHSSHHHHHSCCHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHH
Confidence 7999999999999999888777665553
No 17
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=20.37 E-value=32 Score=25.76 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=26.6
Q ss_pred hchHHHHHHHHHhCCcccccCCCchhHhh---hhhhc
Q 019554 193 VGSAVAAKLMGTAGGLSALAKMPACNVQL---LGAKK 226 (339)
Q Consensus 193 vG~~~aArLi~~aGgL~~LakmPa~nIq~---LGa~K 226 (339)
||+.+|-+|+...|++..+...+...+.- +|..+
T Consensus 27 IG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~ 63 (89)
T 1z00_A 27 VNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQK 63 (89)
T ss_dssp CCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHH
Confidence 89999999999999998888777665543 45544
Done!