RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 019555
(339 letters)
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 529 bits (1365), Expect = 0.0
Identities = 158/328 (48%), Positives = 214/328 (65%), Gaps = 4/328 (1%)
Query: 7 SESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGN 66
+ ++V IV RTP+G FLGSLS + ATKLGSIAI+ A+++A + V+E + GN
Sbjct: 2 ASKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGN 61
Query: 67 VLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGM 126
VL GQAP RQA LGAG+P S CTTINKVC+SGMKA+M+A+QS+ G D++VAGGM
Sbjct: 62 VLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGM 121
Query: 127 ESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
ESMSN P + R + G + D ++KDGL DVYN MG CAE A K I R+EQ
Sbjct: 122 ESMSNVPYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQ 179
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPS 246
D+YAI S+ R AA +G F E+ PV + + +G+P ++V +DE ++ D +K+ KL+
Sbjct: 180 DAYAINSYTRSKAAWEAGKFGNEVIPVTV-TVKGQPDVVVKEDEEYKRVDFSKVPKLKTV 238
Query: 247 F-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS 305
F KE G+VTA NAS ++DGAAALVL++ A L + +A+I FADAA P F AP
Sbjct: 239 FQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPV 298
Query: 306 LAIPKAIANAGLEASQIDYYEINEAFSV 333
A + + GL+ I +E+NEAFS+
Sbjct: 299 YAASMVLKDVGLKKEDIAMWEVNEAFSL 326
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 464 bits (1197), Expect = e-165
Identities = 140/328 (42%), Positives = 193/328 (58%), Gaps = 6/328 (1%)
Query: 9 SIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVL 68
+ + V IV ART +G F G+L++V LGS I+ LKRA V P V EV FG+VL
Sbjct: 2 NAGSDPVVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVL 61
Query: 69 SANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
+A GQ P RQA++GAGIP SV + +C SG+KAV LA QSI +G + IVVAGGME+
Sbjct: 62 AAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMEN 121
Query: 129 MSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDS 188
MS AP +LA R G ++G + D +L DGL D +++ MG+ AE A K ++R++QD
Sbjct: 122 MSKAP-HLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDK 180
Query: 189 YAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLRPSF 247
A+ S R AQ +G F EI PV +S+ +G I V DE + + KL+P F
Sbjct: 181 VAVLSQNRTENAQKAGHFDKEIVPVLVSTRKGL--IEVKTDEFPRHGSNIEAMSKLKPYF 238
Query: 248 KE--GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS 305
G+VT NAS I+DGAAA+VL+ +A + GL +A+I ++ P P
Sbjct: 239 LTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPI 298
Query: 306 LAIPKAIANAGLEASQIDYYEINEAFSV 333
AI +A+ AG +D +EINEAF+
Sbjct: 299 PAIKQAVTKAGWSLEDVDIFEINEAFAA 326
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 451 bits (1163), Expect = e-159
Identities = 154/323 (47%), Positives = 202/323 (62%), Gaps = 4/323 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+DV IV RTP+G F G + SA +LG+IA++ A+ R + + EV GNVL L
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ ARQ A+ AGIPNSV T+NK+C SG+K+V LAAQSI G ND+V+AGG E+MS A
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + AR GS++G+ T+VD ML DGL D +N + MG+ AE A K TR+ QD A+
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLALE 184
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDA--AKLMKLRPSFKEG 250
S + A + F EI PV++ RGK +DKDE K L KL+P+FK+
Sbjct: 185 SQNKAENAIKNNRFKEEIVPVDVLIRRGKI-ETIDKDEYP-KLGMTFEGLSKLKPAFKKD 242
Query: 251 GSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPK 310
G+VTAGNAS I+DGAA L+L+S KA ELG++ +AKI+ +A A PE T P A K
Sbjct: 243 GTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPATRK 302
Query: 311 AIANAGLEASQIDYYEINEAFSV 333
A+ AGL + ID E NEAF+
Sbjct: 303 ALKKAGLSINDIDLIEANEAFAA 325
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 448 bits (1156), Expect = e-159
Identities = 131/322 (40%), Positives = 183/322 (56%), Gaps = 4/322 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A
Sbjct: 3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGE 62
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS A
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+
Sbjct: 123 P-HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLRPSFKEGG 251
S + AAQ G F EI P + +G I VD DE + + KLRP+F + G
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEG 239
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKA 311
+VTAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA
Sbjct: 240 TVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKA 299
Query: 312 IANAGLEASQIDYYEINEAFSV 333
+ AG + +D E NEAF+
Sbjct: 300 LERAGWKIGDLDLVEANEAFAA 321
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 434 bits (1120), Expect = e-153
Identities = 147/323 (45%), Positives = 198/323 (61%), Gaps = 5/323 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
R+V I ART +G F G+ SVSA +LG A + A+KRAN+ P ++ E G VL+A L
Sbjct: 7 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ ARQ ALGAGIP TIN VC SG+++V +A+Q I LG DI++ GG E+MS +
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + AR G+R+G VD M+KDGL D++N++ MG+ AE A + ITR+EQD A+
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALA 186
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDA--AKLMKLRPSFKEG 250
S + AQ G F EI PV + +G +VDKDE + K KL KLRP+FK+
Sbjct: 187 SQNKAEKAQAEGKFDEEIVPVVIKGRKGDT--VVDKDEYI-KPGTTMEKLAKLRPAFKKD 243
Query: 251 GSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPK 310
G+VTAGNAS I+DGAA LV+++ KA ELG++ +A I + A P+ P A K
Sbjct: 244 GTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKK 303
Query: 311 AIANAGLEASQIDYYEINEAFSV 333
A+ A + ID E NEAF+
Sbjct: 304 ALEAANMTIEDIDLVEANEAFAA 326
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 402 bits (1035), Expect = e-140
Identities = 131/325 (40%), Positives = 188/325 (57%), Gaps = 6/325 (1%)
Query: 9 SIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVL 68
S +V I R+P+G F G+L +V+ +L ++ A+KR V+P V EV G+ +
Sbjct: 1 SNAMHNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCI 60
Query: 69 SANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
AR AAL AG P++V TI + CSSGM+A+M AA IQLG++++VVAGG+E+
Sbjct: 61 QRTDEANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEA 120
Query: 129 MSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDS 188
MS++P L + R G RL H I D + + L D + MG AE ++ ITR+EQD
Sbjct: 121 MSSSPYALKQHRWGQRLQHGEIRD-TVWEVLEDPIHHIMMGETAENLVEQYEITREEQDE 179
Query: 189 YAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFD--AAKLMKLRPS 246
A+RS + A SG F +I P+ + R + ++ KDE + D A KL L+P+
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIKERRKE--VVFSKDEHP-RADITAEKLAGLKPA 236
Query: 247 FKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSL 306
F++ GSVTAGNAS ++DG+A LVL+S KA E GLQ +A+I G++ A P+ P+
Sbjct: 237 FRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAP 296
Query: 307 AIPKAIANAGLEASQIDYYEINEAF 331
AI K + D EINEAF
Sbjct: 297 AIRKGLEKVDWSLEDADLLEINEAF 321
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 366 bits (942), Expect = e-126
Identities = 117/327 (35%), Positives = 176/327 (53%), Gaps = 11/327 (3%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+ IV RTP+G G+L+SV L + A+ + R+ V V++V+ G A
Sbjct: 2 PEAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 73 -GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
+ AR A L AG P V T+N++C SG++AV AA++I G + + G+ESMS
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 132 APKYLAEARKGSRLGHDTIVD-----GMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
AP + + +G G+ + D + + +Y MG AE A + I R+EQ
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQ 181
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFD--AAKLMKLR 244
D +A+ S ++ + A G F E+ PV + G+ + I+V++DEG + D KL LR
Sbjct: 182 DRFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKEE--ILVEQDEGP-RRDTSLEKLAALR 238
Query: 245 PSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP 304
P F+EGG+VTAGN+S ++DGAAA++LVS A GL+ +A++R A A P P
Sbjct: 239 PVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGP 298
Query: 305 SLAIPKAIANAGLEASQIDYYEINEAF 331
A KA+ AGL S + E+NEAF
Sbjct: 299 VPATRKALERAGLSFSDLGLIELNEAF 325
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 344 bits (886), Expect = e-118
Identities = 112/327 (34%), Positives = 160/327 (48%), Gaps = 22/327 (6%)
Query: 13 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR----ANVKPLLVQEVFFGNV 67
DV IV R+ +G GF G+ V+ L + + R L++EV GNV
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 68 LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGME 127
L+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A G+E
Sbjct: 70 LNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 129
Query: 128 SMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQD 187
SM+N + + LG I L+ MG+ E A I+R +QD
Sbjct: 130 SMTNNY------KNVNPLGM--ISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQD 181
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFD--AAKLMKLRP 245
+A S+++ A+N GLF EI P+++ G I DEG + + A L +RP
Sbjct: 182 EFAANSYQKAYKAKNEGLFEDEILPIKLPDG-----SICQSDEGP-RPNVTAESLSSIRP 235
Query: 246 SF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP 304
+F K+ G+ TAGNAS +SDG A ++L A +L L V+ + F PE P
Sbjct: 236 AFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGP 295
Query: 305 SLAIPKAIANAGLEASQIDYYEINEAF 331
+ AIPK + GL+ ID +EINEAF
Sbjct: 296 AYAIPKVLEATGLQVQDIDIFEINEAF 322
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 342 bits (879), Expect = e-116
Identities = 113/326 (34%), Positives = 171/326 (52%), Gaps = 20/326 (6%)
Query: 13 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSAN 71
DV +V RT + G + +L S + LK N++P + ++ GNVL
Sbjct: 30 ADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPG 89
Query: 72 LGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
G AR A + IP +V +T+N+ CSSG++AV A I+ G DI +A G+ESMS
Sbjct: 90 AGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSL 149
Query: 132 APKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAI 191
A + + + D ++ MG+ +E A + I+R++QD++A+
Sbjct: 150 ADRGNPGNITSRLMEKEKARDCLI-----------PMGITSENVAERFGISREKQDTFAL 198
Query: 192 RSFKRGIAAQNSGLFAWEIAPVEMSS----GRGKPFIIVDKDEGLEKFD--AAKLMKLRP 245
S ++ AQ+ G F EI PV + G + I V +DEG+ + L KL+P
Sbjct: 199 ASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRS-ITVTQDEGI-RPSTTMEGLAKLKP 256
Query: 246 SFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS 305
+FK+ GS TAGN+S +SDGAAA++L KA ELGL ++ +R +A P+ P+
Sbjct: 257 AFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPA 316
Query: 306 LAIPKAIANAGLEASQIDYYEINEAF 331
AIP A+ AGL S +D +EINEAF
Sbjct: 317 YAIPVALQKAGLTVSDVDIFEINEAF 342
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 330 bits (848), Expect = e-112
Identities = 113/329 (34%), Positives = 168/329 (51%), Gaps = 21/329 (6%)
Query: 9 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGN 66
S+ RDV IV RTPMG G + A + + I L+R + V P V++V +G
Sbjct: 1 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGC 60
Query: 67 VLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
V G AR A+L IP++ T++++C S M A+ AAQ+I G D+ V GG
Sbjct: 61 VNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+E M + + H VD L+ MG+ AE+ H I+R++
Sbjct: 121 VEHMGHVS-----------MMHG--VDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQ 167
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFD--AAKLMKL 243
QD++A+RS + A G F EI P++ G I D DE + + D L L
Sbjct: 168 QDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFL-KIFDYDETI-RPDTTLESLAAL 225
Query: 244 RPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTT 302
+P+F +GG+VTAG +S I+DGA+ ++++S +A +LGL+ +A IR A A P
Sbjct: 226 KPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGY 285
Query: 303 APSLAIPKAIANAGLEASQIDYYEINEAF 331
P A KA+ AGL + ID+ E+NEAF
Sbjct: 286 GPVPATQKALKRAGLNMADIDFIELNEAF 314
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 328 bits (843), Expect = e-111
Identities = 113/333 (33%), Positives = 168/333 (50%), Gaps = 22/333 (6%)
Query: 8 ESIKARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGN 66
S+ DV IV RTP+ G+ L + + +++ N+ P V ++ G
Sbjct: 25 TSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGT 84
Query: 67 VLSANLGQA-PARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
VL+ +A R AA AG P +V T+N+ CSSG++AV A +I+ G DI + G
Sbjct: 85 VLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 144
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+ESM+ P + + + +L MGV +E A + ++R E
Sbjct: 145 LESMTTNPMAWEGSVNPAVKKFAQAQNCLL-----------PMGVTSENVAQRFGVSRQE 193
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMS-----SGRGKPFIIVDKDEGLEKFD--AA 238
QD A+ S ++ AA +G F EI PV+ +G KP I V D+G+ + A
Sbjct: 194 QDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKP-ITVSVDDGI-RPTTTLA 251
Query: 239 KLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPE 298
L KL+P FK+ G+ TAGN+S +SDGA A++L+ A++ GL V+ R FA P
Sbjct: 252 SLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPA 311
Query: 299 WFTTAPSLAIPKAIANAGLEASQIDYYEINEAF 331
P++AIP A+ AGLE ID +EINEAF
Sbjct: 312 IMGIGPAVAIPAAVKAAGLELDDIDLFEINEAF 344
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 316 bits (812), Expect = e-106
Identities = 111/325 (34%), Positives = 159/325 (48%), Gaps = 21/325 (6%)
Query: 13 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA 70
V IV RTPMG G+ +V A L + + L R ++ + ++++G V
Sbjct: 2 EQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 71 -NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
G AR AAL A IP+SV T+N++C S M+A+ AA+ I G + + GG+E M
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHM 121
Query: 130 SNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSY 189
+ P + H L + MG+ AE+ + H I+R+ QD +
Sbjct: 122 GHVP-----------MSHGVDFHPGLSRNVAKAA--GMMGLTAEMLSRLHGISREMQDQF 168
Query: 190 AIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFD--AAKLMKLRPSF 247
A RS R AA SG F EI P G + DE + + + L LRP+F
Sbjct: 169 AARSHARAWAATQSGAFKTEIIPTGGHDADGVL-KQFNYDEVI-RPETTVEALSTLRPAF 226
Query: 248 KE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSL 306
G+VTAG +S +SDGAAA++++S +A ELGL+ A+IR A P P
Sbjct: 227 DPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVP 286
Query: 307 AIPKAIANAGLEASQIDYYEINEAF 331
A A+ AGL AS ID +E+NEAF
Sbjct: 287 ASKLALKKAGLSASDIDVFEMNEAF 311
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 248 bits (637), Expect = 4e-80
Identities = 100/356 (28%), Positives = 152/356 (42%), Gaps = 65/356 (18%)
Query: 13 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVL-- 68
+ I RTP G GSL+ V L ++ +R + L+ ++ G V
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 69 ---SANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
++ AR A L AG+P + +N+ C+SG++AV AAQ ++ G +D+V+AGG
Sbjct: 67 GDQGGDI----ARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGG 122
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLW--------DVYNDFGMGVCAEICAN 177
+ESMS P M DG G+ A++ A
Sbjct: 123 VESMSRVP--------------------MGSDGGAWATDPETNYRIGFVPQGIGADLIAT 162
Query: 178 KHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFD 236
+R++ D+YA+RS ++ AA + G FA + PV +G +I+D DE +
Sbjct: 163 LEGFSREDVDAYALRSQQKAAAAWSGGYFAKSVVPVRDQNGL----VILDHDEHMRPDTT 218
Query: 237 AAKLMKLRPSFKEGGS---------------------VTAGNASIISDGAAALVLVSGVK 275
L KL+ +F G T GN+S I DGAA +++ S
Sbjct: 219 MEGLAKLKTAFDGVGEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKA 278
Query: 276 ALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAF 331
GL A+I A + P T P+ A K + AGL ID +E+NEAF
Sbjct: 279 GKSQGLTPRARIVATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAF 334
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 54.1 bits (130), Expect = 3e-08
Identities = 44/304 (14%), Positives = 79/304 (25%), Gaps = 116/304 (38%)
Query: 5 EPSESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFF 64
+P E K V VG G +G +S+ L + + +L QE F
Sbjct: 1031 DPYEMYKYVHVSEVGNC---SGSGMGGVSA-----LRGMFKDRFKDEPVQNDIL-QESFI 1081
Query: 65 GNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAG 124
+ + + + P C++ +++V + ++I G I + G
Sbjct: 1082 NTMSAWVN------MLLISSSGPIKTPVGA----CATSVESVDIGVETILSGKARICIVG 1131
Query: 125 GMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRD 184
G + D +G E K T
Sbjct: 1132 GYD--------------------DFQEEGS-----------------FEFGNMKATSNTL 1154
Query: 185 EQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLR 244
E+ F P EMS R P R
Sbjct: 1155 EE-------------------FEHGRTPAEMS--R--PA---TTT--------------R 1174
Query: 245 PSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRG---FADAAQAPEWFT 301
F + + GA +++ AL++G+ + + D
Sbjct: 1175 NGF------------MEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIG-----R 1217
Query: 302 TAPS 305
+ P+
Sbjct: 1218 SVPA 1221
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 58/397 (14%), Positives = 119/397 (29%), Gaps = 121/397 (30%)
Query: 2 VP-LEPSESIK--------ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRA 52
V L+P ++ A++V I G + G G + V+ S ++C
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDG-----VLGS-GK-TWVALDVCLSYKVQCK---- 179
Query: 53 NVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQS 112
+ NL + + L + I+ +S + +
Sbjct: 180 ----------MDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDH----SSN 222
Query: 113 IQLGINDIVVAGGMESMSNAPKYLAEARKGSR-LGHDTIVDGMLKDGLWD--VYNDFGMG 169
I+L I+ I + L +++ L +V L + + +N F +
Sbjct: 223 IKLRIHSI---------QAELRRLLKSKPYENCL----LV---L-LNVQNAKAWNAFNLS 265
Query: 170 VCAEICANKHTITRDEQDSYAIRSFKRGI-----------AAQNSGLFA-W-EIA----P 212
C + TR +Q + + + + L + + P
Sbjct: 266 -CKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 213 VEMSSGRGKPFII-----VDKD-----EGLEKFDAAKLMK-------------LRPSFKE 249
E+ + P + +D + + + KL R F
Sbjct: 320 REVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 250 GGSVTAGNASIISDGA----AALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFT-TAP 304
S+ A L L+ + V+ K+ ++ + P+ T + P
Sbjct: 378 --------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 305 SLAI---PKAIANAGLEASQIDYYEINEAFSVRNHVP 338
S+ + K L S +D+Y I + F + +P
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 43.8 bits (102), Expect = 1e-05
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 19/45 (42%)
Query: 274 VKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLE 318
+K L+ L++ A + +AP+LAI A +E
Sbjct: 22 LKKLQASLKLYA-----------DD---SAPALAI-----KATME 47
Score = 29.9 bits (66), Expect = 0.62
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 233 EKFDAAKLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKA-LE 278
EK L KL+ S K + A D A AL +KA +E
Sbjct: 18 EK---QALKKLQASLK----LYA------DDSAPAL----AIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 8e-05
Identities = 50/231 (21%), Positives = 75/231 (32%), Gaps = 64/231 (27%)
Query: 114 QLG--INDIVVAGGMESMSNAPKYLA---EARKGSRLGHDTIVDGMLKDGLWDVYNDFGM 168
G I DIV N P L KG R+ + M+ + + D
Sbjct: 1656 TYGFSILDIV--------INNPVNLTIHFGGEKGKRIRENY--SAMIFETIVDGKLKT-E 1704
Query: 169 GVCAEICANKHTIT-RDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVD 227
+ EI + + T R E+ + F Q L E A E
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQF-----TQ-PALTLMEKAAFE-----------DL 1747
Query: 228 KDEGLEKFDAAKLMKLRPSFKEGGSVTAGNASIISDGA-AALVLVSGVKALELGLQVIAK 286
K +GL DA F AG+ S+ G AAL ++ V ++E ++V+
Sbjct: 1748 KSKGLIPADAT--------F-------AGH-SL---GEYAALASLADVMSIESLVEVV-F 1787
Query: 287 IRGFADAAQAPEWFTTAPS----LAI-PKAIANAGLEASQIDYY--EINEA 330
RG A S +AI P +A A + Y + +
Sbjct: 1788 YRGMT-MQVAVPRDELGRSNYGMIAINPGRVA-ASFSQEALQYVVERVGKR 1836
Score = 42.0 bits (98), Expect = 3e-04
Identities = 73/430 (16%), Positives = 116/430 (26%), Gaps = 153/430 (35%)
Query: 5 EPSESIKARD--VCIVG-VARTPMGGFLGSLSS-VSATKLGSIAIECALKRANVKPLLVQ 60
EP+E A D V + FLG +SS V +K+G V L +
Sbjct: 43 EPTEGFAADDEPTTPAELVGK-----FLGYVSSLVEPSKVGQ--------FDQVLNLCLT 89
Query: 61 EVFFGNVLSAN---------LGQAPARQAALGAGIPN-----SVVCTTINKVCSSGMKAV 106
E F L N L + I N + +K +S A+
Sbjct: 90 E-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---AL 145
Query: 107 MLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDF 166
A + + + GG N Y E R L+ Y+
Sbjct: 146 FRAVGEGNAQL--VAIFGGQ---GNTDDYFEELRD-----------------LYQTYHVL 183
Query: 167 GMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAW-------------EIAPV 213
+ + R D A + F +G+ + W P+
Sbjct: 184 VGDLIKFSAETLSELIRTTLD--AEKVFTQGLN-----ILEWLENPSNTPDKDYLLSIPI 236
Query: 214 EMSSGRGKPFI---------IVDKDEGL-------------------------------E 233
P I + K G E
Sbjct: 237 SC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 234 KFDAAKLMKLRPSF------KEGGSVTAGNASIISD------GAAALVL-VSGVKALELG 280
F + + F E T+ SI+ D G + +L +S + ++
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV- 349
Query: 281 LQVIAKIRGFADAAQ--------APEWFT-TAP--SL-----AIPKAIANAGLEASQIDY 324
+ K A + + + P SL + KA A +GL+ S+I +
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 325 YEINEAFSVR 334
E FS R
Sbjct: 410 SERKLKFSNR 419
Score = 36.6 bits (84), Expect = 0.013
Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 31/124 (25%)
Query: 29 LG---SLSSVSATKLGSIAIECALK----RANVKPLLVQEVFFGNVLSANLGQAPARQAA 81
LG +L+S++ ++IE ++ R + V + +N G
Sbjct: 1764 LGEYAALASLA----DVMSIESLVEVVFYRGM---TMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 82 LGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGIND------IVVAGGM---ESMSNA 132
+ A + + +V V + N V AG + ++++N
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIV--------NYNVENQQYVAAGDLRALDTVTNV 1868
Query: 133 PKYL 136
++
Sbjct: 1869 LNFI 1872
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 39.8 bits (94), Expect = 0.001
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 81 ALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
A+GA P ++V T C+SG+ +V A ++I+ G D++ AG ++
Sbjct: 155 AVGAEGPVTMVSTG----CTSGLDSVGNAVRAIEEGSADVMFAGAADT 198
Score = 35.5 bits (83), Expect = 0.019
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-------LAIPKAI 312
++++GAA VL AL G ++ A+I G+A A + T I A+
Sbjct: 236 VLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNA--YHMTGLKADGREMAETIRVAL 293
Query: 313 ANAGLEASQIDYYEIN 328
+ +A+ IDY IN
Sbjct: 294 DESRTDATDIDY--IN 307
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 38.1 bits (89), Expect = 0.003
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 39 KLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKV 98
KL A++ AL + N+K + G++L+ N+ A A IP +
Sbjct: 57 KLMEDAVQSALSKQNLKKEDIDIFLAGDLLNQNV---TANYVARHLKIP----FLCLFGA 109
Query: 99 CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
CS+ M+++ +++ I G +A + A +
Sbjct: 110 CSTSMESIAISSALIDGGFAKRALAATSSHNATAER 145
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 37.9 bits (89), Expect = 0.004
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 82 LGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
A + C+SG +A+ A Q I LG D + GG+E+
Sbjct: 174 RHAKAGVMTPVSA----CASGAEAIARAWQQIVLGEADAAICGGVET 216
Score = 34.8 bits (81), Expect = 0.035
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
+ +G A L++ + A G ++A+I G +D + AP AI
Sbjct: 255 VFGEGGALLLIETEEHAKARGANILARIMGASITSDG-----FHMVAPDPNGERAGHAIT 309
Query: 310 KAIANAGLEASQIDYYEIN 328
+AI AGL ID+ +N
Sbjct: 310 RAIQLAGLAPGDIDH--VN 326
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 37.5 bits (88), Expect = 0.004
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 82 LGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
LGA + CSSG +A+ A + I +G D+ V GG+E
Sbjct: 158 LGARAGVMTPVSA----CSSGSEAIAHAWRQIVMGDADVAVCGGVEG 200
Score = 34.0 bits (79), Expect = 0.055
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
+ + A +++ + A G + +A++ G +DA + AP+ A+
Sbjct: 238 VFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDA-----FHMVAPAADGVRAGRAMT 292
Query: 310 KAIANAGLEASQIDYYEIN 328
+++ AGL + ID+ +N
Sbjct: 293 RSLELAGLSPADIDH--VN 309
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 37.5 bits (88), Expect = 0.005
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN+ T C++G A+ A + +Q G ++ GG E+
Sbjct: 159 PNNCTVTA----CAAGSNAIGDAFRLVQNGYAKAMICGGTEA 196
Score = 35.6 bits (83), Expect = 0.018
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADA----AQAPEWFTTAPSLAIPKAI 312
++ +G+ L+L AL G ++ ++ G+ DA A P+ + AI A+
Sbjct: 234 VMGEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPD--GRGATRAIAWAL 291
Query: 313 ANAGLEASQIDYYEIN 328
++GL+ + Y IN
Sbjct: 292 KDSGLKPEMVSY--IN 305
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 37.5 bits (88), Expect = 0.005
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN T C++G ++ A + +Q G D ++ GG E+
Sbjct: 180 PNGATVTA----CATGTNSIGEAFKIVQRGDADAMITGGTEA 217
Score = 35.2 bits (82), Expect = 0.026
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADA----AQAPEWFTTAPSLAIPKAI 312
++ +GA LV+ S A G + A+I G+ DA A APE S A+ A+
Sbjct: 254 VMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPE--GEGGSRAMQAAM 311
Query: 313 ANAGLEASQIDYYEIN 328
+AG+E + Y +N
Sbjct: 312 DDAGIEPKDVQY--LN 325
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 37.5 bits (88), Expect = 0.005
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
P+S V T C++G A+ A + IQLG D+V+AGG E+
Sbjct: 153 PSSTVVTA----CATGADALGSALRMIQLGEADLVLAGGTEA 190
Score = 34.8 bits (81), Expect = 0.032
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADA----AQAPEWFTTAPSLAIPKAI 312
++ +GA LVL + A + G ++ A++ GF ADA PE +LA+ +A+
Sbjct: 228 VMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPE--GKGAALAMARAL 285
Query: 313 ANAGLEASQIDYYEIN 328
+AG+ Q+ Y IN
Sbjct: 286 KDAGIAPEQVGY--IN 299
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 37.1 bits (87), Expect = 0.006
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
NS T C++ ++ A + I+ G D ++ GG E+
Sbjct: 156 INSTTVTA----CATATNSIGDAFKVIERGDADAMITGGAEA 193
Score = 34.8 bits (81), Expect = 0.030
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADA----AQAPEWFTTAPSLAIPKAI 312
II +GA ++L A G ++ A+I G+ DA A AP + A+ AI
Sbjct: 230 IIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPN--GEGAARAMKMAI 287
Query: 313 ANAGLEASQIDYYEIN 328
+AGL ++DY IN
Sbjct: 288 DDAGLTPDKVDY--IN 301
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 37.1 bits (87), Expect = 0.006
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN V T C++G A+ AA+ I G D++VAGG ES
Sbjct: 170 PNHSVVTA----CATGTHAIGDAARLIAFGDADVMVAGGTES 207
Score = 35.6 bits (83), Expect = 0.019
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
++ +GA +VL AL G ++ A++ G+ DA + TAP+ +
Sbjct: 246 VMGEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDA-----FHITAPTESGEGAQRCMV 300
Query: 310 KAIANAGLEASQIDYYEIN 328
A+ AG+ +IDY IN
Sbjct: 301 AALKRAGIVPDEIDY--IN 317
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 37.1 bits (87), Expect = 0.007
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
+ T CSS A+ A +SI+ G D+++ GG E+
Sbjct: 175 VCKSINTA----CSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 34.0 bits (79), Expect = 0.055
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
++ +G+ LVL S A + G ++A++ G+ DA + T+P AI
Sbjct: 249 VMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA-----YHMTSPHPEGQGAIKAIK 303
Query: 310 KAIANAGLEASQIDYYEIN 328
A+ A + Q+ Y +N
Sbjct: 304 LALEEAEISPEQVAY--VN 320
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 37.1 bits (87), Expect = 0.007
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN V T C++G AV + + I G D++VAGG +S
Sbjct: 180 PNHAVSTA----CTTGAHAVGDSFRFIAHGDADVMVAGGTDS 217
Score = 36.0 bits (84), Expect = 0.017
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
++ +GAA LVL A++ ++ A++ G+ DA TAP +
Sbjct: 254 VMGEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSGDA-----GHITAPDPEGEGALRCMA 308
Query: 310 KAIANAGLEASQIDYYEIN 328
A+ +AG++ +I Y IN
Sbjct: 309 AALKDAGVQPEEISY--IN 325
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 37.2 bits (87), Expect = 0.007
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
P T C++ ++A+ A + I+ G D+V+AGG E+
Sbjct: 185 PLGCPVTA----CAASVQAIGDAMRMIRTGEADVVLAGGAEA 222
Score = 35.6 bits (83), Expect = 0.021
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
++ +GAA +V+ S AL G + IA+I G+ ADA + TA A+
Sbjct: 261 VMGEGAAMVVVESLDHALARGARPIAEIIGYGTTADA-----YHMTAGPDDGSGAMRAMK 315
Query: 310 KAIANAGLEASQIDYYEIN 328
A+ + Q+DY +N
Sbjct: 316 LALRMGDVAPEQVDY--VN 332
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 36.8 bits (86), Expect = 0.008
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
P+ + T +SG+ + AA+ I G D++VAGG E
Sbjct: 170 PSISIATA----ATSGVHNIGHAARIIAYGDADVMVAGGAEK 207
Score = 35.2 bits (82), Expect = 0.028
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADA----AQAPEWFTTAPSLAIPKAI 312
++ DGA LVL A + G ++ A++ GF +DA + +LA+ A+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN--GAGAALAMANAL 302
Query: 313 ANAGLEASQIDYYEIN 328
+AG+EASQI Y +N
Sbjct: 303 RDAGIEASQIGY--VN 316
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 36.8 bits (86), Expect = 0.008
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-------LAIP 309
+I +G+ +VL A G ++ A++ G+ DA T P LA+
Sbjct: 247 VIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDA-----HHITQPPEDGKGAVLAMT 301
Query: 310 KAIANAGLEASQIDYYEIN 328
+A+ +GL +QIDY +N
Sbjct: 302 RALRQSGLCPNQIDY--VN 318
Score = 36.8 bits (86), Expect = 0.009
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN T C++G ++ A + IQ G D++VAGG ES
Sbjct: 171 PNHAAVTA----CATGAHSIGDATRMIQFGDADVMVAGGTES 208
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 36.7 bits (86), Expect = 0.009
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
+ C+SG +A+ A ++I +G +++AGG E
Sbjct: 160 RIVPTSSA----CASGSQAIGYAYENIAMGKQTLMLAGGAEE 197
Score = 35.5 bits (83), Expect = 0.021
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGF---ADAAQAPEWFTTAPS-----LAIPKA 311
++ +GAA LVL A G + A+I GF +D A T P+ A+ A
Sbjct: 234 VVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH-----MTQPTASTMARAMQLA 288
Query: 312 IANAGLEASQIDYYEIN 328
+ +A L+A+ I Y +N
Sbjct: 289 LEDAKLDANAIAY--VN 303
>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic,
transferase, amino-thiazole, acyltransferase, lipid
synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP:
c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A*
2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A
1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A*
2cf2_A 2byw_A ...
Length = 406
Score = 35.9 bits (84), Expect = 0.014
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
N + + C++ + A + IQLG DIV AGG E
Sbjct: 155 VNYSISSA----CATSAHCIGNAVEQIQLGKQDIVFAGGGEE 192
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 35.9 bits (84), Expect = 0.016
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
P+S + + G+ A+ A ++I+ G +VV+GG++S
Sbjct: 161 PSSALVAE----QAGGLDALGHARRTIRRGT-PLVVSGGVDS 197
Score = 31.3 bits (72), Expect = 0.39
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 260 IISDGAAALVLVSGVKALELGLQVI-AKIRGF---ADA---AQAPEWFTTAPSLAIPKAI 312
+ +G A LVL A G ++ G D + P AI A+
Sbjct: 234 VPGEGGAILVLEDSAAAEARGRHDAYGELAGCASTFDPAPGSGRPA----GLERAIRLAL 289
Query: 313 ANAGLEASQIDYYEIN 328
+AG +D +
Sbjct: 290 NDAGTGPEDVDV--VF 303
>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography,
beta-ketoacyl SYN brucella melitensis, fragments of
LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar
abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*
Length = 428
Score = 35.6 bits (83), Expect = 0.017
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
N + + C++ + A + IQ G D + AGG E
Sbjct: 174 INYSISSA----CATSNHCIGNAYEMIQYGKQDRMFAGGCED 211
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 35.7 bits (82), Expect = 0.026
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS------LAIPKAIA 313
+ S G V+++ ALE+G+ + + + A + P+ +
Sbjct: 1352 MESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDK--IGRSVPAPGQGVLTTAREKSG 1409
Query: 314 NAGLEASQIDY 324
N I Y
Sbjct: 1410 NFPSPLLDIKY 1420
Score = 34.5 bits (79), Expect = 0.060
Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 19/126 (15%)
Query: 5 EPSESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFF 64
+P E K + VG +G +G S++ + V+ ++QE F
Sbjct: 1205 DPYEFYKYVHLSEVGNC---IGSGVGGTSALRGM------YKDRYLDKPVQKDILQESFV 1255
Query: 65 GNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAG 124
+ + L + P C++ ++++ + +I G + + G
Sbjct: 1256 NTMAAWVN------MLLLSSTGPIKTPVGA----CATAVESLDVGYDTIMQGKARVCLVG 1305
Query: 125 GMESMS 130
G +
Sbjct: 1306 GFDDFQ 1311
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 35.0 bits (80), Expect = 0.028
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 2/118 (1%)
Query: 37 ATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTIN 96
LG+ A A++ + + F ++ A + A L G+ +V I
Sbjct: 115 VPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDMPSADFQCAKL-LGLHANVNKYCIY 173
Query: 97 KV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDG 153
+G + A + V+ E + E + +G DG
Sbjct: 174 MQGAYAGGTVMRYAKDLAENNRGARVLVVCAELTIMMLRAPNETHLDNAIGISLFGDG 231
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 35.0 bits (80), Expect = 0.032
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 4/150 (2%)
Query: 37 ATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPAR-QAALGAGIPNSVVCTTI 95
+L A E A++ + + F + + +L A L G+ SV +
Sbjct: 125 VPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFEVAKLL--GLHPSVKRVGV 182
Query: 96 N-KVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGM 154
C +G + +A + V+ E+ + + +E S +G DG
Sbjct: 183 FQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALFGDGA 242
Query: 155 LKDGLWDVYNDFGMGVCAEICANKHTITRD 184
+ C EI T+ +
Sbjct: 243 SALIVGADPIPQVEKACFEIVWTAQTVVPN 272
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 34.2 bits (78), Expect = 0.071
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 82 LGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 130
+ + P C++ +++V + ++I G I + GG +
Sbjct: 1292 ISSSGPIKTPVGA----CATSVESVDIGVETILSGKARICIVGGYDDFQ 1336
Score = 27.6 bits (61), Expect = 7.5
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS 305
+ + GA +++ AL++G+ + + A A + P+
Sbjct: 1377 MEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDK--IGRSVPA 1420
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 33.8 bits (78), Expect = 0.078
Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 20/103 (19%)
Query: 48 ALKRANVKPLLVQE----VFFGNVLS---ANLGQAPARQAALGAGIPNSVV--------- 91
++ A + P ++ VF G + A + G+ +V
Sbjct: 106 LVENAGIDPHSLRGTATGVFLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMG 165
Query: 92 ----CTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 130
+++ CSS + A+ LA +S++ G + + V GG M+
Sbjct: 166 LEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAAVMA 208
Score = 33.4 bits (77), Expect = 0.11
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 262 SDGAAALVLVSGVKALELGLQVIAKIRGFA---DAAQAPEWFTTAPS-----LAIPKAIA 313
S+G ++L +A G +V+A +RG A D A +APS I +A+
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRGSALNQDGASNG---LSAPSGPAQRRVIRQALE 297
Query: 314 NAGLEASQIDYYE 326
+ GLE +D E
Sbjct: 298 SCGLEPGDVDAVE 310
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 33.8 bits (78), Expect = 0.091
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 262 SDGAAALVLVSGVKALELGLQVIAKIRGFA---DAAQAPEWFTTAPS-----LAIPKAIA 313
++GA LVL A G V+A +RG A D A TAPS I +A+
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNG---LTAPSGPAQQRVIRRALE 319
Query: 314 NAGLEASQIDYYE 326
NAG+ A +DY E
Sbjct: 320 NAGVRAGDVDYVE 332
Score = 33.0 bits (76), Expect = 0.13
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 48 ALKRANVKPLLVQE----VFFGNVLS---ANLGQAPARQAA-LGAGIPNSVV-------- 91
AL+RA P+ ++ VF G +AP +G G +SV
Sbjct: 127 ALERAGHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCL 186
Query: 92 -----CTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 130
T++ CSSG+ A+ LA +S++ + +AGG+ MS
Sbjct: 187 GLEGPAMTVDTACSSGLTALHLAMESLRRDECGLALAGGVTVMS 230
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 33.7 bits (77), Expect = 0.10
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 94 TINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG 142
TI+ CSS + A+ A Q+I+ G V GG+ + L + G
Sbjct: 156 TIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLG 204
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 262 SDGAAALVLVSGVKALELGLQVIAKIRGFA---DAAQAPEWFTTAPS-----LAIPKAIA 313
++ A++L L +V A I D ++ T PS I A
Sbjct: 225 AEAVVAVLL----TKKSLARRVYATILNAGTNTDGSKEQG--VTFPSGDVQEQLIRSLYA 278
Query: 314 NAGLEASQIDYYE 326
AG + ++Y E
Sbjct: 279 PAGPDPESLEYIE 291
>3awk_A Chalcone synthase-like polyketide synthase; type III polyketide
synthase, transferase; 2.00A {Huperzia serrata} PDB:
3awj_A
Length = 402
Score = 31.9 bits (72), Expect = 0.33
Identities = 40/244 (16%), Positives = 82/244 (33%), Gaps = 26/244 (10%)
Query: 35 VSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTT 94
+ KL A A+K+ + + F ++ A + A L G+ +V
Sbjct: 113 LEVPKLAKEAAISAIKQWGQPKSKITHLVFATTSGVDMPGADFQLAKL-LGLRPTVKRVM 171
Query: 95 IN-KVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDG 153
+ + +G + +A + V+ E + R +T +DG
Sbjct: 172 LYQQGAYAGATVLRVAKDLAENNKGARVLVACSEVTAVT----------FRAPSETHLDG 221
Query: 154 MLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEI--A 211
++ L FG G A I + + ++E+ + I + + G + A
Sbjct: 222 LVGSAL------FGDGAAALIVGSD-PVPQEEKPLFEIHWAGEAVLPDSDGAINGHLREA 274
Query: 212 PVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPSFKE--GGSVTAGNASIISDGAAALV 269
+ + P +I + ++K A L + +V G +I+ A L
Sbjct: 275 GLIFHLLKDVPGLIS---KNIDKVLAEPLEYVHFPSYNDMFWAVHPGGPAILDQIEAKLG 331
Query: 270 LVSG 273
L +
Sbjct: 332 LSTD 335
>1i88_A CHS2, chalcone synthase 2; polyketide synthase, transferase; 1.45A
{Medicago sativa} SCOP: c.95.1.2 c.95.1.2 PDB: 1i89_A
1i86_A 1i8b_A 1bi5_A 1cml_A* 1d6f_A* 1chw_A* 1cgz_A*
1cgk_A* 1bq6_A* 1jwx_A 1d6i_A 1d6h_A* 1u0v_A 1u0w_A*
1z1e_A* 1z1f_A*
Length = 389
Score = 31.0 bits (70), Expect = 0.47
Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 2/170 (1%)
Query: 35 VSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTT 94
V +LG A A+K + + ++ A + L G+ V
Sbjct: 100 VEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTKL-LGLRPYVKRYM 158
Query: 95 INKV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDG 153
+ + +G + LA + V+ E + + ++ S +G DG
Sbjct: 159 MYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDG 218
Query: 154 MLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNS 203
+ E+ TI D + + + + G+
Sbjct: 219 AAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDVHLREAGLTFHLL 268
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 29.9 bits (67), Expect = 1.1
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 5/119 (4%)
Query: 37 ATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL-GQAPARQAALGAGIPNSVVCTTI 95
G A AL+ A + V + N + L G A L + +
Sbjct: 137 VQAYGERAARGALQIAGLDVADVDCLITSNSTTPALPGLDVALANRL--PLRGDTMLLPA 194
Query: 96 NKV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDG 153
+ C +G +++ LAA + + +V+ E++S A+ S + D
Sbjct: 195 TQWACVAGTRSLALAADLVAADPDRVVLVVISEALSTT-YQPADDTLESLIVRLLFADT 252
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 29.8 bits (67), Expect = 1.3
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 2/120 (1%)
Query: 35 VSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTT 94
+L A E A+K + + F ++ ++ A R A L G+P +V
Sbjct: 100 EEIPRLAKEAAEKAIKEWGRPKSEITHLVFCSISGIDMPGADYRLATL-LGLPLTVNRLM 158
Query: 95 INKV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDG 153
I C G + +A + V+ E + + E + G DG
Sbjct: 159 IYSQACHMGAAMLRIAKDLAENNRGARVLVVACEITVLSFRGPNEGDFEALAGQAGFGDG 218
>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase;
2.00A {Oryza sativa} PDB: 3ale_A
Length = 387
Score = 29.0 bits (65), Expect = 2.2
Identities = 28/175 (16%), Positives = 49/175 (28%), Gaps = 20/175 (11%)
Query: 37 ATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTIN 96
+L + A + A+ + + A++ R L G+ SV T ++
Sbjct: 96 VPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHVPGVDFRLVPL-LGLRPSVRRTMLH 154
Query: 97 KV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGML 155
C +G A+ LA + V+ E E + L
Sbjct: 155 LNGCFAGCAALRLAKDLAENSRGARVLVVAAELTLMYFTGPDEGCFRTLLVQGL------ 208
Query: 156 KDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEI 210
FG G A I E+ + I S + I ++
Sbjct: 209 ----------FGDGAAAVIVGADADDV--ERPLFEIVSAAQTIIPESDHALNMRF 251
>1q8f_A Pyrimidine nucleoside hydrolase; open alpha-beta structure,
NH-fold; 1.70A {Escherichia coli} SCOP: c.70.1.1 PDB:
3b9x_A* 3mkn_A* 3mkm_A*
Length = 313
Score = 28.7 bits (65), Expect = 2.7
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 238 AKLMKLRPSFKE--------GGSVTAGNAS------IISD-GAAALVLVSGVKALELGLQ 282
A M+++P+ GG+ GN + I +D AA +V SGV + +GL
Sbjct: 131 AVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTSGVPLVMMGLD 190
Query: 283 V 283
+
Sbjct: 191 L 191
>2mas_A Inosine-uridine nucleoside N-ribohydrolase; purine nucleoside
hydrolase, IU-NH, purine nucleosidase; HET: PIR; 2.30A
{Crithidia fasciculata} SCOP: c.70.1.1 PDB: 1mas_A*
1ezr_A
Length = 314
Score = 28.7 bits (65), Expect = 2.7
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 15/61 (24%)
Query: 238 AKLMKLRPSFKE--------GGSVTAGNAS------IISD-GAAALVLVSGVKALELGLQ 282
A +L P + GG GNA+ II D AA +V + +GL
Sbjct: 132 AMAARLEPRIVDRVKEVVLMGGGYHEGNATSVAEFNIIIDPEAAHIVFNESWQVTMVGLD 191
Query: 283 V 283
+
Sbjct: 192 L 192
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase,
bacterial nucleosidase, RIB enzyme-product complex,
hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB:
3g5i_A*
Length = 322
Score = 28.7 bits (65), Expect = 2.9
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 238 AKLMKLRPSFKE--------GGSVTAGNAS------IISD-GAAALVLVSGVKALELGLQ 282
A L+ P GG++ GN + I D AA +V SG+ + GL
Sbjct: 142 ALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLD 201
Query: 283 V 283
V
Sbjct: 202 V 202
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 28.7 bits (65), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 99 CSSGMKAVMLAAQSIQLGINDIVVAGG 125
CSS + A+ A Q+I G + GG
Sbjct: 163 CSSSLMALQNAYQAIHSGQCPAAIVGG 189
Score = 27.1 bits (61), Expect = 9.8
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 302 TAPS-LA----IPKAIANAGLEASQIDYYE 326
T PS I +AG+ +Y E
Sbjct: 264 TFPSGDIQEQLIRSLYQSAGVAPESFEYIE 293
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 26.5 bits (59), Expect = 5.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 98 VCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
C +G +A+ A +LG + G +
Sbjct: 62 HCRAGRRALDAAKSMHELGYTPYYLEGNVYDFEKY 96
>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS,
chalcone-S synthase superfamily, type I PKS; HET: P6G;
2.90A {Dictyostelium discoideum}
Length = 374
Score = 27.5 bits (61), Expect = 7.8
Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 22/175 (12%)
Query: 37 ATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTIN 96
L A ALK + + + + L G+ V ++N
Sbjct: 95 VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDL-LGLNKDVERVSLN 153
Query: 97 KV-CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGML 155
+ C +G+ ++ AA + + ++ E S D +V +
Sbjct: 154 LMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH------FSNTDGG--DQMVASSI 205
Query: 156 KDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEI 210
F G A I +E Y + W++
Sbjct: 206 ----------FADGSAAYIIGCNP--RIEETPLYEVMCSINRSFPNTENAMVWDL 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,119,495
Number of extensions: 325724
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 105
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)