RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019555
(339 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 239 bits (612), Expect = 8e-79
Identities = 113/269 (42%), Positives = 156/269 (57%), Gaps = 4/269 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A
Sbjct: 3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGE 62
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS A
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+
Sbjct: 123 P-HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLRPSFKEGG 251
S + AAQ G F EI P + +G I VD DE + + KLRP+F + G
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEG 239
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELG 280
+VTAGNAS ++DGAAA +L+S +A G
Sbjct: 240 TVTAGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 206 bits (526), Expect = 6e-66
Identities = 98/275 (35%), Positives = 148/275 (53%), Gaps = 9/275 (3%)
Query: 14 DVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLG 73
+ IV RTP+G G+L+SV L + A+ + R+ V V++V+ G A
Sbjct: 1 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 60
Query: 74 QA-PARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
AR A L AG P V T+N++C SG++AV AA++I G + + G+ESMS A
Sbjct: 61 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 120
Query: 133 PKYLAEARKGSRLGHDTIVDG-----MLKDGLWDVYNDFGMGVCAEICANKHTITRDEQD 187
P + + +G G+ + D + + +Y MG AE A + I R+EQD
Sbjct: 121 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 180
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKF-DAAKLMKLRPS 246
+A+ S ++ + A G F E+ PV + G+ I+V++DEG + KL LRP
Sbjct: 181 RFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKE--EILVEQDEGPRRDTSLEKLAALRPV 238
Query: 247 FKEGGSVTAGNASIISDGAAALVLVSGVKALELGL 281
F+EGG+VTAGN+S ++DGAAA++LVS A GL
Sbjct: 239 FREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 159 bits (403), Expect = 1e-47
Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 11 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRA----NVKPLLVQEVFFG 65
+ DV IV R+ +G GF G+ V+ L + + R L++EV G
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 67
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
NVL+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A G
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+ESM+N K + I L+ MG+ E A I+R +
Sbjct: 128 VESMTNNYKNVNP--------LGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKD 179
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLR 244
QD +A S+++ A+N GLF EI P+++ G I DEG A L +R
Sbjct: 180 QDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIR 234
Query: 245 PSF-KEGGSVTAGNASIISDGAAALVLVSGVKA 276
P+F K+ G+ TAGNAS +SDG A ++L A
Sbjct: 235 PAFIKDRGTTTAGNASQVSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 155 bits (392), Expect = 4e-46
Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 17/275 (6%)
Query: 9 SIKARDVCIVGVARTPMGGFLGSLSS-VSATKLGSIAIECALKR-ANVKPLLVQEV-FFG 65
S+ RDV IV RTPMG G + A + + I L+R + V P V++V +
Sbjct: 1 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGC 60
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
+ G AR A+L IP++ T++++C S M A+ AAQ+I G D+ V GG
Sbjct: 61 VNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+E M + VD L+ MG+ AE+ H I+R++
Sbjct: 121 VEHMGHVS-------------MMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQ 167
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRP 245
QD++A+RS + A G F EI P++ G I + L L+P
Sbjct: 168 QDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKP 227
Query: 246 SFK-EGGSVTAGNASIISDGAAALVLVSGVKALEL 279
+F +GG+VTAG +S I+DGA+ ++++S +A +L
Sbjct: 228 AFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDL 262
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 52.2 bits (125), Expect = 3e-09
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 279 LGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVRNH 336
L L V+ + F PE P+ AIPK + GL+ ID +EINEAF+ +
Sbjct: 1 LNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQAL 58
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 51.1 bits (122), Expect = 7e-09
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 281 LQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSV 333
+Q + +I +A P+ T P A KA+ AG + +D E NEAF+
Sbjct: 1 IQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAA 53
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 45.0 bits (106), Expect = 9e-07
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 284 IAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVRNH 336
+A++R A A P P A KA+ AGL S + E+NEAF+ +
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQAL 55
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 45.0 bits (106), Expect = 1e-06
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 280 GLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVRN 335
GL+ +A IR A A P P A KA+ AGL + ID+ E+NEAF+ +
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQA 56
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 37.4 bits (85), Expect = 0.001
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 99 CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG 142
+ G+ A+ A ++I+ G +VV+GG++S + ++++ G
Sbjct: 160 QAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASG 202
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 35.0 bits (79), Expect = 0.007
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 88 NSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
T ++ C+SG+ +V A ++I+ G D++ AG ++
Sbjct: 156 AEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPIT 199
>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase
RmlC {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 31.3 bits (70), Expect = 0.099
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 160 WDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGL-FAWEIAPVEMSSG 218
+Y G+ ++ + + I A + L W +
Sbjct: 109 RTIYVSEGLAHGFLAL-QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVD------ 161
Query: 219 RGKPFIIVDKDEGLEKFDAAKLMKLRPSFKE 249
G + D+D F+ + L P +++
Sbjct: 162 -GAAPSLSDRDAAAPSFEDVRASGLLPRWEQ 191
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 28.6 bits (63), Expect = 0.78
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQ-----APEWFTTAPSLAIPKAIAN 314
++++GAA VL AL G ++ A+I G+A + + I A+
Sbjct: 18 VLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDE 77
Query: 315 AGLEASQIDYYEINEAFSVRNH 336
+ +A+ IDY + + + +N
Sbjct: 78 SRTDATDIDYINAHGSGTRQND 99
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 25.7 bits (57), Expect = 1.9
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 190 AIRSFKRGIAAQNSGLFAWEI 210
I +KR QN +FAWEI
Sbjct: 17 KIAEYKR----QNPTMFAWEI 33
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 26.8 bits (58), Expect = 3.0
Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 12/204 (5%)
Query: 96 NKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL-AEARKGSRLGHDTIVDGM 154
NKVC G+ A + G GG+ ++ +P+ + E + G+
Sbjct: 3 NKVC--GLTRGQDAKAAYDAGAI----YGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGV 56
Query: 155 LKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVE 214
++ D + + D+ R A L E P
Sbjct: 57 FRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTL--REALPAHVAIWKALSVGETLPAR 114
Query: 215 MSSGRGKPFIIVDKDEGLEKFDAAKLMKL-RPSFKEGGSVTAGN-ASIISDGAAALVLVS 272
K + + ++FD + L + G + A N G A L S
Sbjct: 115 EFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNS 174
Query: 273 GVKALELGLQVIAKIRGFADAAQA 296
V++ + G++ + +A
Sbjct: 175 AVES-QPGIKDARLLASVFQTLRA 197
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 24.6 bits (54), Expect = 4.9
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 191 IRSFKRGIAAQNSGLFAWEI 210
I +K+ + +FAWEI
Sbjct: 16 IAQYKQ----ECPSIFAWEI 31
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 26.0 bits (56), Expect = 5.8
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 16/121 (13%)
Query: 163 YNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKP 222
N + E + E + +++F I ++ + +E P+
Sbjct: 117 NNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYE--PLWAIGTGKTA 174
Query: 223 FIIVDKDEGLEKFDAAKLMKLRPSFKE-----GGSVTAGNASIIS-----DGAAALVLVS 272
+ E K + GGSV N S + DG LV
Sbjct: 175 TPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGF----LVG 230
Query: 273 G 273
Sbjct: 231 N 231
>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 249
Score = 25.7 bits (56), Expect = 9.5
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPS 246
S I +A G F PV++ G+ F + + D + K + L+ R S
Sbjct: 194 SKQIF-----LAQNQGGKFRN---PVDLIKPTGQRFQVTNVDSDVVKGNIKLLLNSRAS 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,173,525
Number of extensions: 53314
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 25
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)