Your job contains 1 sequence.
>019556
MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVV
LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT
ASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVG
IANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEK
VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWL
PKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 019556
(339 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116164 - symbol:HDR "4-hydroxy-3-methylbut-2-... 1495 2.8e-153 1
TIGR_CMR|VC_0685 - symbol:VC_0685 "hydroxymethylbutenyl p... 143 1.5e-16 3
TIGR_CMR|NSE_0438 - symbol:NSE_0438 "4-hydroxy-3-methylbu... 133 4.0e-16 3
TIGR_CMR|CPS_1211 - symbol:CPS_1211 "4-hydroxy-3-methylbu... 143 9.9e-14 2
UNIPROTKB|P62623 - symbol:ispH "1-hydroxy-2-methyl-2-(E)-... 113 1.2e-13 3
UNIPROTKB|Q81LU9 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 120 5.9e-13 3
TIGR_CMR|BA_4511 - symbol:BA_4511 "penicillin tolerance p... 120 5.9e-13 3
UNIPROTKB|Q8EBI7 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 121 1.2e-12 3
TIGR_CMR|SO_3529 - symbol:SO_3529 "penicillin tolerance p... 121 1.2e-12 3
TIGR_CMR|CJE_0973 - symbol:CJE_0973 "4-hydroxy-3-methylbu... 125 1.6e-12 2
UNIPROTKB|Q749Y8 - symbol:ispH "4-hydroxy-3-methylbut-2-e... 145 1.1e-10 2
TIGR_CMR|GSU_2604 - symbol:GSU_2604 "penicillin tolerance... 145 1.1e-10 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 140 3.0e-10 2
TIGR_CMR|SPO_3207 - symbol:SPO_3207 "4-hydroxy-3-methylbu... 99 7.9e-10 3
TIGR_CMR|ECH_0502 - symbol:ECH_0502 "hydroxymethylbutenyl... 146 3.7e-09 2
GENEDB_PFALCIPARUM|PFA0225w - symbol:lytB "LytB protein" ... 120 6.4e-09 3
UNIPROTKB|Q8I295 - symbol:lytB "LytB protein" species:363... 120 6.4e-09 3
TIGR_CMR|APH_0380 - symbol:APH_0380 "4-hydroxy-3-methylbu... 130 1.5e-07 2
TIGR_CMR|DET_1344 - symbol:DET_1344 "hydroxymethylbutenyl... 115 2.0e-06 2
>TAIR|locus:2116164 [details] [associations]
symbol:HDR "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:3702 "Arabidopsis thaliana" [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA;IGI;IEP;ISS]
[GO:0046677 "response to antibiotic" evidence=ISS] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0051745 "4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
activity" evidence=IGI] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0009570 EMBL:CP002687 GO:GO:0046872
GO:GO:0051538 GO:GO:0016114 EMBL:AL035521 EMBL:AL161585
GO:GO:0019288 GO:GO:0050992 GO:GO:0046429 EMBL:AY883838
EMBL:AY168881 EMBL:AY042877 EMBL:AY081454 EMBL:AK317707
EMBL:AK222055 IPI:IPI00536800 PIR:T04781 RefSeq:NP_567965.1
UniGene:At.2618 ProteinModelPortal:Q94B35 SMR:Q94B35 STRING:Q94B35
PRIDE:Q94B35 EnsemblPlants:AT4G34350.1 GeneID:829585
KEGG:ath:AT4G34350 TAIR:At4g34350 InParanoid:Q94B35 KO:K03527
OMA:QDAMFSL PhylomeDB:Q94B35 ProtClustDB:PLN02821
BioCyc:ARA:AT4G34350-MONOMER-9581
BioCyc:MetaCyc:AT4G34350-MONOMER-9581 Genevestigator:Q94B35
GO:GO:0051745 TIGRFAMs:TIGR00216 Uniprot:Q94B35
Length = 466
Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
Identities = 280/336 (83%), Positives = 312/336 (92%)
Query: 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
IAYEARKQFPEE++WITNEIIHNPTVNKRLE+M V+ IPVE+ KKQFDVV K DVV+LPA
Sbjct: 131 IAYEARKQFPEERLWITNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFDVVEKDDVVILPA 190
Query: 64 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
FGA V+EM LN+K VQIVDTTCPWV+KVW +VEKHKKG+YTS+IHGKY+HEET+ATASF
Sbjct: 191 FGAGVDEMYVLNDKKVQIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASF 250
Query: 124 AGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIAN 183
AGKYIIVKNMKEA YVCDYILGG+ +GSSSTKE F+EKFK A+SKGFDPD DLVKVGIAN
Sbjct: 251 AGKYIIVKNMKEANYVCDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIAN 310
Query: 184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDL 243
QTTMLKGETEEIG+L+E TMMRK+GVENV+ HFISFNTICDATQERQDA+Y++VEEK+DL
Sbjct: 311 QTTMLKGETEEIGRLLETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELVEEKIDL 370
Query: 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKG 303
+LVVGGWNSSNTSHLQEI+E RGIPSYWIDSEKRIGPGNKIAYKL +GELVEKEN+LPKG
Sbjct: 371 MLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEKENFLPKG 430
Query: 304 QITIGITSGASTPDKAVEDVLKKVFEIKREEALQLA 339
ITIG+TSGASTPDK VED L KVF+IKREE LQLA
Sbjct: 431 PITIGVTSGASTPDKVVEDALVKVFDIKREELLQLA 466
>TIGR_CMR|VC_0685 [details] [associations]
symbol:VC_0685 "hydroxymethylbutenyl pyrophosphate
reductase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 OMA:QDAMFSL GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 ProtClustDB:PRK01045 PIR:G82293 RefSeq:NP_230334.2
DNASU:2615474 GeneID:2615474 KEGG:vch:VC0685 PATRIC:20080487
Uniprot:Q9KU44
Length = 316
Score = 143 (55.4 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 222 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280
IC ATQ RQDA+ +++ E+VD+++VVG NSSN++ L+E+AE G P Y ID + I P
Sbjct: 198 ICYATQNRQDAV-RILAEQVDVMVVVGSKNSSNSTRLKELAEKLGTPGYLIDCPQDIDP 255
Score = 93 (37.8 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
I++ +E++HN V + L++ + VEE + V ++V+ A G +
Sbjct: 33 IYVRHEVVHNRFVVEGLKQRGARF--VEE----LNEVPDDNIVIFSAHGVSQAVRQEAKE 86
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT-ASFA----GKYIIVK 131
+++ + D TCP V+KV V + + ++ G H E T +A G Y++ K
Sbjct: 87 RSLTVFDATCPLVTKVHMEVARASRKHMEVVLIGHAGHPEVEGTMGQYASDTGGMYLVEK 146
Score = 67 (28.6 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 299 WLPKGQITIGITSGASTPDKAVEDVLKKVFEI 330
W Q+ IG+T+GAS P++ V +L ++ E+
Sbjct: 257 WFVDAQL-IGVTAGASAPEELVNQILDRIKEL 287
>TIGR_CMR|NSE_0438 [details] [associations]
symbol:NSE_0438 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 OMA:DPRSNNS RefSeq:YP_506323.1 STRING:Q2GDX3
GeneID:3932177 KEGG:nse:NSE_0438 PATRIC:22680929
ProtClustDB:CLSK2528057 BioCyc:NSEN222891:GHFU-459-MONOMER
Uniprot:Q2GDX3
Length = 303
Score = 133 (51.9 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 33/113 (29%), Positives = 61/113 (53%)
Query: 8 ARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA 67
A +++PE+KI++ +EI+HN V + + V I E+ K V V++ A G +
Sbjct: 25 AIRRYPEKKIFVYHEIVHNSRVIQDFKARGVDFI--EDITK----VEPKSVLIFSAHGVS 78
Query: 68 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 120
E + + ++ +VD TCP VSK+ V++ +K + ++ G +H E + T
Sbjct: 79 EEIEKYVKSLDLVLVDATCPLVSKIHREVQRFEKEGFIILVIGNRNHAEIIGT 131
Score = 109 (43.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 209 VENVNEHF---ISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265
+ + E F + + +C ATQ RQ+A+ K + ++VDL+L+VG NSSN+ +L +++
Sbjct: 175 INKIKEKFPNVVGRSDVCYATQNRQEAV-KALAKEVDLMLIVGSTNSSNSRNLMQVSSKI 233
Query: 266 GIPSYWIDSEKRIGP 280
++ ID+ + P
Sbjct: 234 CQKAFLIDNYNEVEP 248
Score = 58 (25.5 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 298 NWLPKGQITIGITSGASTPDKAVEDV---LKKVF 328
+W +G +GI+SGAS P+ V+D+ LKK F
Sbjct: 249 DWF-EGVDRVGISSGASAPEILVQDLVSFLKKRF 281
>TIGR_CMR|CPS_1211 [details] [associations]
symbol:CPS_1211 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0046677 "response to antibiotic" evidence=ISS] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_267954.1
STRING:Q486R1 GeneID:3519583 KEGG:cps:CPS_1211 PATRIC:21465667
OMA:LVTKVHQ BioCyc:CPSY167879:GI48-1292-MONOMER Uniprot:Q486R1
Length = 309
Score = 143 (55.4 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 222 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
IC ATQ RQDA+ + + +KVDL+LVVG NSSN++ L+E+A G+ SY ID+ + I
Sbjct: 196 ICYATQNRQDAV-REIADKVDLMLVVGAKNSSNSNRLKELASKMGVTSYLIDTAENI 251
Score = 99 (39.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 31/118 (26%), Positives = 53/118 (44%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
I++ +E++HN V L++ I V+E D V + V+ A G +
Sbjct: 33 IYVRHEVVHNKFVVDGLKDRGA--IFVDE----LDEVPDDNTVIFSAHGVSKAVRQEAKT 86
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT-----ASFAGKYII 129
+ +++ D TCP V+KV V + + D I+ G H E T + AG Y++
Sbjct: 87 RALKVFDATCPLVTKVHMEVSRVSRKDIECILIGHAGHPEVEGTMGQYSSDSAGIYLV 144
Score = 54 (24.1 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 285 AYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLK 325
+Y + E +E + WL G +G+T+GAS P ++ V++
Sbjct: 242 SYLIDTAENIETD-WLT-GVNKVGVTAGASAPAVLIKQVVE 280
>UNIPROTKB|P62623 [details] [associations]
symbol:ispH "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
reductase" species:83333 "Escherichia coli K-12" [GO:0050992
"dimethylallyl diphosphate biosynthetic process" evidence=IEA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051745
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity"
evidence=IEA] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA]
[GO:0046677 "response to antibiotic" evidence=IDA] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401
UniPathway:UPA00056 UniPathway:UPA00059 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0046677 GO:GO:0006744 GO:GO:0051538 GO:GO:0019288 EMBL:X54945
GO:GO:0050992 KO:K03527 OMA:QDAMFSL GO:GO:0051745
TIGRFAMs:TIGR00216 eggNOG:COG0761 HOGENOM:HOG000220192
ProtClustDB:PRK01045 EMBL:AY062212 PIR:JE0403 RefSeq:NP_414570.1
RefSeq:YP_488335.1 PDB:3F7T PDB:3KE8 PDB:3KE9 PDB:3KEF PDB:3KEL
PDB:3KEM PDB:3SZL PDB:3SZO PDB:3SZU PDB:3T0F PDB:3T0G PDB:3URK
PDB:3UTC PDB:3UTD PDB:3UV3 PDB:3UV6 PDB:3UV7 PDB:3UWM PDB:3ZGL
PDB:3ZGN PDBsum:3F7T PDBsum:3KE8 PDBsum:3KE9 PDBsum:3KEF
PDBsum:3KEL PDBsum:3KEM PDBsum:3SZL PDBsum:3SZO PDBsum:3SZU
PDBsum:3T0F PDBsum:3T0G PDBsum:3URK PDBsum:3UTC PDBsum:3UTD
PDBsum:3UV3 PDBsum:3UV6 PDBsum:3UV7 PDBsum:3UWM PDBsum:3ZGL
PDBsum:3ZGN ProteinModelPortal:P62623 SMR:P62623 DIP:DIP-35808N
IntAct:P62623 PaxDb:P62623 PRIDE:P62623
EnsemblBacteria:EBESCT00000002954 EnsemblBacteria:EBESCT00000002955
EnsemblBacteria:EBESCT00000002956 EnsemblBacteria:EBESCT00000002957
EnsemblBacteria:EBESCT00000017150 GeneID:12933923 GeneID:944777
KEGG:ecj:Y75_p0029 KEGG:eco:b0029 PATRIC:32115149 EchoBASE:EB1073
EcoGene:EG11081 BioCyc:EcoCyc:EG11081-MONOMER
BioCyc:ECOL316407:JW0027-MONOMER BioCyc:MetaCyc:EG11081-MONOMER
BRENDA:1.17.1.2 EvolutionaryTrace:P62623 Genevestigator:P62623
GO:GO:0042380 Uniprot:P62623
Length = 316
Score = 113 (44.8 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 31/101 (30%), Positives = 53/101 (52%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 237
K+ QTT+ +T ++ + K + G + IC AT RQ+A+ + +
Sbjct: 160 KLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRK--------DDICYATTNRQEAV-RAL 210
Query: 238 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
E+ +++LVVG NSSN++ L E+A+ G ++ ID K I
Sbjct: 211 AEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDI 251
Score = 98 (39.6 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 28/104 (26%), Positives = 47/104 (45%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
I++ +E++HN V L E I +E Q V G +++ A G + +
Sbjct: 33 IYVRHEVVHNRYVVDSLRERGA--IFIE----QISEVPDGAILIFSAHGVSQAVRNEAKS 86
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 120
+++ + D TCP V+KV V + + SI+ G H E T
Sbjct: 87 RDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGT 130
Score = 70 (29.7 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 296 KENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREEALQL 338
+E W+ + + +G+T+GAS PD V++V+ ++ ++ EA+ L
Sbjct: 252 QEEWVKEVKC-VGVTAGASAPDILVQNVVARLQQLGGGEAIPL 293
>UNIPROTKB|Q81LU9 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051538
GO:GO:0019288 GO:GO:0050992 KO:K03527 GO:GO:0051745
TIGRFAMs:TIGR00216 RefSeq:NP_846735.1 RefSeq:YP_021156.1
RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 120 (47.3 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 37/134 (27%), Positives = 59/134 (44%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTL 74
I+I I+HN V EE + + +G + D+++K D V+ A G + E
Sbjct: 35 IYILGMIVHNKHVTDAFEEDGIITL---DGPSRLDILDKIDSGTVIFTAHGVSPEVKQRA 91
Query: 75 NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYI-IVK-- 131
K + +D TCP V+K +E K Y I GK +H E A + +++
Sbjct: 92 KEKGLTTIDATCPDVTKTHDLIEAKKAEGYHVIYIGKKNHPEPEGAVGIAPDIVHLIERA 151
Query: 132 -NMKEAEYVCDYIL 144
++K E D IL
Sbjct: 152 DDLKTLEIPTDKIL 165
Score = 95 (38.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 237
K+ + NQTTM + + + + + ++K KF ++ IC ATQ RQ+A+ K
Sbjct: 163 KILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEAVAKQA 212
Query: 238 EEKVDLILVVGGWNSSNTSHLQEIAED-RGIPSY 270
+ DL +VVG S+N++ L +++++ G +Y
Sbjct: 213 DV-ADLTIVVGDPKSNNSNRLAQVSQEIAGTKAY 245
Score = 58 (25.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 281 GNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVL 324
G K AY++ ++ E WL +G + +T+GASTP ++V+
Sbjct: 241 GTK-AYRVADVSEIKLE-WL-QGVENVAVTAGASTPTPITKEVI 281
>TIGR_CMR|BA_4511 [details] [associations]
symbol:BA_4511 "penicillin tolerance protein LytB"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 RefSeq:NP_846735.1
RefSeq:YP_021156.1 RefSeq:YP_030438.1 IntAct:Q81LU9 DNASU:1088236
EnsemblBacteria:EBBACT00000010185 EnsemblBacteria:EBBACT00000016704
EnsemblBacteria:EBBACT00000020757 GeneID:1088236 GeneID:2818527
GeneID:2852179 KEGG:ban:BA_4511 KEGG:bar:GBAA_4511 KEGG:bat:BAS4190
eggNOG:COG0761 HOGENOM:HOG000220192 OMA:DPRSNNS
ProtClustDB:PRK01045 BioCyc:BANT260799:GJAJ-4246-MONOMER
BioCyc:BANT261594:GJ7F-4388-MONOMER Uniprot:Q81LU9
Length = 316
Score = 120 (47.3 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 37/134 (27%), Positives = 59/134 (44%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD--VVVLPAFGAAVEEMVTL 74
I+I I+HN V EE + + +G + D+++K D V+ A G + E
Sbjct: 35 IYILGMIVHNKHVTDAFEEDGIITL---DGPSRLDILDKIDSGTVIFTAHGVSPEVKQRA 91
Query: 75 NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYI-IVK-- 131
K + +D TCP V+K +E K Y I GK +H E A + +++
Sbjct: 92 KEKGLTTIDATCPDVTKTHDLIEAKKAEGYHVIYIGKKNHPEPEGAVGIAPDIVHLIERA 151
Query: 132 -NMKEAEYVCDYIL 144
++K E D IL
Sbjct: 152 DDLKTLEIPTDKIL 165
Score = 95 (38.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 28/94 (29%), Positives = 52/94 (55%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 237
K+ + NQTTM + + + + + ++K KF ++ IC ATQ RQ+A+ K
Sbjct: 163 KILVTNQTTMSQWDVQHLMEDIQK----KFPTAEFHKE------ICLATQVRQEAVAKQA 212
Query: 238 EEKVDLILVVGGWNSSNTSHLQEIAED-RGIPSY 270
+ DL +VVG S+N++ L +++++ G +Y
Sbjct: 213 DV-ADLTIVVGDPKSNNSNRLAQVSQEIAGTKAY 245
Score = 58 (25.5 bits), Expect = 5.9e-13, Sum P(3) = 5.9e-13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 281 GNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVL 324
G K AY++ ++ E WL +G + +T+GASTP ++V+
Sbjct: 241 GTK-AYRVADVSEIKLE-WL-QGVENVAVTAGASTPTPITKEVI 281
>UNIPROTKB|Q8EBI7 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 121 (47.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 173 DVDLVKVGIANQTTMLKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICDATQER 229
DV+ ++V N + T + ++ ++++F +E + + IC ATQ R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 230 QDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274
QDA+ + + VDL++VVG NSSN++ L+E+A G SY +D+
Sbjct: 213 QDAVRNLSAD-VDLLIVVGSKNSSNSNRLRELALKTGTQSYLVDT 256
Score = 102 (41.0 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 27/104 (25%), Positives = 48/104 (46%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
I++ +E++HN V + L++ + VEE D V ++V+ A G +
Sbjct: 42 IYVRHEVVHNRYVVQNLKDRGA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKA 95
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 120
+ +++ D TCP V+KV V + + I+ G H E T
Sbjct: 96 RGLRVFDATCPLVTKVHLQVTRASRKGIECILIGHAGHPEVEGT 139
Score = 47 (21.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 307 IGITSGASTPDKAVEDVLKKVFEI 330
+ +T+GAS P+ V+ V++ + ++
Sbjct: 271 VAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|SO_3529 [details] [associations]
symbol:SO_3529 "penicillin tolerance protein LytB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR003451
Pfam:PF02401 UniPathway:UPA00056 UniPathway:UPA00059 GO:GO:0046872
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051538 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
RefSeq:NP_719076.1 DNASU:1171202 GeneID:1171202 KEGG:son:SO_3529
PATRIC:23526748 OMA:SMDDTAD Uniprot:Q8EBI7
Length = 318
Score = 121 (47.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 33/105 (31%), Positives = 58/105 (55%)
Query: 173 DVDLVKVGIANQTTMLKGETEEIGKLVE--KTMMRKF-GVENVNEHFISFNTICDATQER 229
DV+ ++V N + T + ++ ++++F +E + + IC ATQ R
Sbjct: 158 DVETLEVRDPNNLCFVTQTTLSVDDTLDIISALLKRFPSIEGPRK-----DDICYATQNR 212
Query: 230 QDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274
QDA+ + + VDL++VVG NSSN++ L+E+A G SY +D+
Sbjct: 213 QDAVRNLSAD-VDLLIVVGSKNSSNSNRLRELALKTGTQSYLVDT 256
Score = 102 (41.0 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 27/104 (25%), Positives = 48/104 (46%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
I++ +E++HN V + L++ + VEE D V ++V+ A G +
Sbjct: 42 IYVRHEVVHNRYVVQNLKDRGA--VFVEE----LDQVPDNNIVIFSAHGVSQAVRAEAKA 95
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT 120
+ +++ D TCP V+KV V + + I+ G H E T
Sbjct: 96 RGLRVFDATCPLVTKVHLQVTRASRKGIECILIGHAGHPEVEGT 139
Score = 47 (21.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 307 IGITSGASTPDKAVEDVLKKVFEI 330
+ +T+GAS P+ V+ V++ + ++
Sbjct: 271 VAVTAGASAPEVLVQQVVQAIAKL 294
>TIGR_CMR|CJE_0973 [details] [associations]
symbol:CJE_0973 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:195099 "Campylobacter jejuni RM1221" [GO:0015968
"stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS ProtClustDB:PRK01045 RefSeq:YP_178971.1 STRING:Q5HUR4
GeneID:3231484 KEGG:cjr:CJE0973 PATRIC:20043729
HOGENOM:HOG000220193 BioCyc:CJEJ195099:GJC0-993-MONOMER
Uniprot:Q5HUR4
Length = 277
Score = 125 (49.1 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 219 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
FNTICDAT + QDA+ K + K D+++VVGG NS+NT L IA+ SY I++E+ +
Sbjct: 182 FNTICDATFKNQDAI-KELSLKSDVMVVVGGKNSANTKQLFLIAKTNCEDSYLIETEEEL 240
Score = 106 (42.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 29/118 (24%), Positives = 54/118 (45%)
Query: 23 IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 82
+IHN RL++ N V+ + ++ ++ G +++ L K+++I
Sbjct: 34 LIHNNEEISRLQK----NFNVKT-LENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIF 88
Query: 83 DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYV 139
D TCP+V+K E+ K Y +I G +H E S+ K +V + KE + +
Sbjct: 89 DATCPFVTKPQQICEQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNI 146
Score = 66 (28.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 285 AYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEIK 331
+Y + E ++KE +L K GI++GASTPD ++ V+ K+ K
Sbjct: 231 SYLIETEEELKKEWFLDKKHC--GISAGASTPDWIIQKVIAKIENFK 275
>UNIPROTKB|Q749Y8 [details] [associations]
symbol:ispH "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00191
InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 145 (56.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 54/227 (23%), Positives = 105/227 (46%)
Query: 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
+A+EA ++ E + + IIH+P V +RLE M V+ + EG + G V++ +
Sbjct: 21 MAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSDLEG------IGNGTVIIR-S 71
Query: 64 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
G E+ + +++VD TCP+V K V++ YT ++ G H E S+
Sbjct: 72 HGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDGYTVVVVGDADHPEVQGIVSY 131
Query: 124 A-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIA 182
A G +V + +EA + + G + ++ + E K+ + KG ++ + I
Sbjct: 132 AEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVVKECLLKG--GEIRVFNT-IC 188
Query: 183 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQER 229
+ T + + E + + + V+ M+ G + N ++ +C Q R
Sbjct: 189 DATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EVCSELQPR 232
Score = 137 (53.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 175 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY 234
++ KVG+ QTT ++ E K V K + K G V FNTICDAT RQD
Sbjct: 150 NMKKVGVVAQTT----QSFETLKNVVKECLLKGGEIRV------FNTICDATAVRQDEA- 198
Query: 235 KMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
K + +VD ++V+GG+NS+NT L E+ + +Y I++ + +
Sbjct: 199 KALAREVDCMIVIGGFNSANTKRLAEVCSELQPRTYHIETAQEL 242
Score = 65 (27.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 298 NWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 334
+W +G +G+T+GASTP +++V++++ E ++
Sbjct: 245 SWF-QGVERVGVTAGASTPKWLIDEVIERIQEFDNKK 280
>TIGR_CMR|GSU_2604 [details] [associations]
symbol:GSU_2604 "penicillin tolerance protein LytB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0015968 "stringent response"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0051538 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
OMA:DPRSNNS HOGENOM:HOG000220193 RefSeq:NP_953649.1 DNASU:2686313
GeneID:2686313 KEGG:gsu:GSU2604 PATRIC:22028061
ProtClustDB:CLSK790176 BioCyc:GSUL243231:GH27-2583-MONOMER
Uniprot:Q749Y8
Length = 282
Score = 145 (56.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 54/227 (23%), Positives = 105/227 (46%)
Query: 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPA 63
+A+EA ++ E + + IIH+P V +RLE M V+ + EG + G V++ +
Sbjct: 21 MAFEAAEK--EGETFTLGPIIHSPQVVQRLEGMGVKVLSDLEG------IGNGTVIIR-S 71
Query: 64 FGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASF 123
G E+ + +++VD TCP+V K V++ YT ++ G H E S+
Sbjct: 72 HGVTSAELEDAVRRQLEVVDATCPFVKKAQEHVKRLSHDGYTVVVVGDADHPEVQGIVSY 131
Query: 124 A-GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIA 182
A G +V + +EA + + G + ++ + E K+ + KG ++ + I
Sbjct: 132 AEGPVHVVGSGEEAARLPNMKKVGVVAQTTQSFETLKNVVKECLLKG--GEIRVFNT-IC 188
Query: 183 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQER 229
+ T + + E + + + V+ M+ G + N ++ +C Q R
Sbjct: 189 DATAVRQDEAKALAREVD-CMIVIGGFNSANTKRLA--EVCSELQPR 232
Score = 137 (53.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 175 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY 234
++ KVG+ QTT ++ E K V K + K G V FNTICDAT RQD
Sbjct: 150 NMKKVGVVAQTT----QSFETLKNVVKECLLKGGEIRV------FNTICDATAVRQDEA- 198
Query: 235 KMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
K + +VD ++V+GG+NS+NT L E+ + +Y I++ + +
Sbjct: 199 KALAREVDCMIVIGGFNSANTKRLAEVCSELQPRTYHIETAQEL 242
Score = 65 (27.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 298 NWLPKGQITIGITSGASTPDKAVEDVLKKVFEIKREE 334
+W +G +G+T+GASTP +++V++++ E ++
Sbjct: 245 SWF-QGVERVGVTAGASTPKWLIDEVIERIQEFDNKK 280
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 140 (54.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 46/131 (35%), Positives = 68/131 (51%)
Query: 150 GSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGV 209
G S K +E ++A F P K+ + QTT ++E ++VE +++K G
Sbjct: 130 GWSGYKALVVENPEEAARLPFYP-----KIAVIAQTTQ---KSENFWQVVE--VIKKKGG 179
Query: 210 ENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 269
E V FNTIC AT+ RQ+ K+ E V+++LVVGG NS+NT L +I P+
Sbjct: 180 E-VRP----FNTICHATRTRQEESRKLATE-VEVMLVVGGKNSANTKKLAQICAATNTPT 233
Query: 270 YWIDSEKRIGP 280
Y I+ I P
Sbjct: 234 YLIEEASEIKP 244
Score = 129 (50.5 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 48/211 (22%), Positives = 94/211 (44%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
++ +IHNP +RL++ + IP+EE ++ G +++ + G E++ + +
Sbjct: 32 VYSLGPLIHNPQEVERLKKAGI--IPIEEIEE-----GNGKTIIIRSHGTTPEKLQEIVD 84
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 135
+ + D TCP+V K +K Y ++ G H E ++G K ++V+N +E
Sbjct: 85 RGYVVEDATCPFVKKAQILAQKLTDEGYQVVVVGDKKHPEVQGIVGWSGYKALVVENPEE 144
Query: 136 AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEI 195
A + Y + ++ E F + + KG +V I + T + E+ ++
Sbjct: 145 AARLPFYPKIAVIAQTTQKSENFWQVVEVIKKKG--GEVRPFNT-ICHATRTRQEESRKL 201
Query: 196 GKLVEKTMMRKFGVENVNEHFISFNTICDAT 226
VE M+ G + N ++ IC AT
Sbjct: 202 ATEVE-VMLVVGGKNSANTKKLA--QICAAT 229
Score = 80 (33.2 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 296 KENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI-KREEAL 336
K W G+ +GIT+GASTP +E+V KKV ++ E+AL
Sbjct: 243 KPEWFA-GKAKVGITAGASTPAWIIEEVRKKVEQMASMEQAL 283
>TIGR_CMR|SPO_3207 [details] [associations]
symbol:SPO_3207 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0009240
"isopentenyl diphosphate biosynthetic process" evidence=ISS]
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0051538 GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 OMA:DPRSNNS ProtClustDB:PRK01045
RefSeq:YP_168410.1 GeneID:3195859 KEGG:sil:SPO3207 PATRIC:23379861
Uniprot:Q5LNJ7
Length = 316
Score = 99 (39.9 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 32/121 (26%), Positives = 51/121 (42%)
Query: 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN 76
+++ +EI+HN V L + VEE D V+ A G
Sbjct: 38 VYVRHEIVHNKFVVDGLRAKGA--VFVEE----LDECPDDRPVIFSAHGVPKAIPAEAER 91
Query: 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--GKYIIVKNMK 134
+ + VD TCP VSKV E+H + I+ G H ET+ T G+ ++V+ +
Sbjct: 92 RQMVYVDATCPLVSKVHIEAERHAEHGLQIIMIGHRGHPETIGTMGQLPEGEVLLVETVA 151
Query: 135 E 135
+
Sbjct: 152 D 152
Score = 98 (39.6 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 34/96 (35%), Positives = 47/96 (48%)
Query: 175 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY 234
D ++ QTT+ +T +I + +F + V H IC AT RQ+A+
Sbjct: 160 DPARLAFVTQTTLSVDDTRDI----VAALQARFP-QIVGPHK---EDICYATTNRQEAV- 210
Query: 235 KMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270
K V K D +LVVG NSSN+ L E+A G SY
Sbjct: 211 KAVAPKSDALLVVGAPNSSNSRRLVEVAAKAGC-SY 245
Score = 49 (22.3 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 290 HGELVEKEN---WLP-KGQITIGITSGASTPDKAVEDVL 324
+ +LV++ + W G TI +++GAS P+ V +V+
Sbjct: 245 YAQLVQRADDIDWRALDGIATIAVSAGASAPELLVNEVI 283
>TIGR_CMR|ECH_0502 [details] [associations]
symbol:ECH_0502 "hydroxymethylbutenyl pyrophosphate
reductase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0051538 GO:GO:0016114 GO:GO:0019288
GO:GO:0050992 KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216
eggNOG:COG0761 HOGENOM:HOG000220192 ProtClustDB:PRK01045
OMA:LVTKVHQ RefSeq:YP_507317.1 STRING:Q2GGW6 GeneID:3927316
KEGG:ech:ECH_0502 PATRIC:20576476
BioCyc:ECHA205920:GJNR-504-MONOMER Uniprot:Q2GGW6
Length = 319
Score = 146 (56.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 49/187 (26%), Positives = 85/187 (45%)
Query: 16 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN 75
K+++ +EI+HN + L+EM V I D G +++ A G + +E+ L
Sbjct: 42 KVYVLHEIVHNKYIINSLKEMGVIFIDT------LDQAEDGSILIYSAHGIS-KEIEHLG 94
Query: 76 NK-NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNM 133
N++I+D TCP V+KV V+ + K Y I+ G H E T ++V+N+
Sbjct: 95 QSCNLEIIDATCPLVNKVHKEVQAYDKKGYQIILIGHKGHREVEGTMGQITNPVLLVQNL 154
Query: 134 KEAEYV----CD---YILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTT 186
+ + + D Y+ L+ TKE + K K+ PD+ + N+ T
Sbjct: 155 SDIDNIEVTNSDKLAYVTQTTLS-VDDTKE-IINKLKQKFPNIKGPDLKDICYATQNRQT 212
Query: 187 MLKGETE 193
+K +E
Sbjct: 213 AVKQLSE 219
Score = 133 (51.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 39/101 (38%), Positives = 59/101 (58%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 237
K+ QTT+ +T+EI + K + +KF N+ IC ATQ RQ A+ K +
Sbjct: 167 KLAYVTQTTLSVDDTKEI---INK-LKQKF--PNIKGP--DLKDICYATQNRQTAV-KQL 217
Query: 238 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI 278
E VD+I V+G NSSN++ L+E+AE + P++ IDS + I
Sbjct: 218 SELVDIIFVLGSKNSSNSNRLKELAELK-TPAFLIDSYQEI 257
Score = 52 (23.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 307 IGITSGASTPD---KAVEDVLKKVFEIK 331
IGIT+GAS P+ V D+LK+ IK
Sbjct: 268 IGITAGASAPEILITEVIDLLKQHMNIK 295
>GENEDB_PFALCIPARUM|PFA0225w [details] [associations]
symbol:lytB "LytB protein" species:5833
"Plasmodium falciparum" [GO:0020011 "apicoplast" evidence=IDA]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 GO:GO:0055114
EMBL:AL844501 GO:GO:0019288 GO:GO:0020011 KO:K03527
TIGRFAMs:TIGR00216 HOGENOM:HOG000220192 GenomeReviews:AL844501_GR
RefSeq:XP_001350977.1 ProteinModelPortal:Q8I295 PRIDE:Q8I295
EnsemblProtists:PFA0225w:mRNA GeneID:813182 KEGG:pfa:PFA_0225w
ProtClustDB:CLSZ2431638 Uniprot:Q8I295
Length = 535
Score = 120 (47.3 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 37/132 (28%), Positives = 66/132 (50%)
Query: 7 EARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA 66
E K F + I++ ++I+HN V K+LE+ I +E+ + V G +++ A G
Sbjct: 243 ECLKLF-KPPIYVKHKIVHNDIVCKKLEKEGA--IFIED----LNDVPDGHILIYSAHGI 295
Query: 67 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGK 126
+ + K + +D TCP V+KV V+ K +Y I+ G +H E + T + A
Sbjct: 296 SPQIREIAKKKKLIEIDATCPLVNKVHVYVQMKAKENYDIILIGYKNHVEVIGTYNEAPH 355
Query: 127 YI-IVKNMKEAE 137
IV+N+ + +
Sbjct: 356 CTHIVENVNDVD 367
Score = 85 (35.0 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKM 236
K+ QTT+ ++ +V+K + KF +E + +IC AT RQ A+ K+
Sbjct: 376 KLFYVTQTTL---SMDDCALIVQK-LKNKFPHIETIPS-----GSICYATTNRQTALNKI 426
Query: 237 VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274
K DL +VVG +SSN L ++ R +P+ +++
Sbjct: 427 CT-KCDLTIVVGSSSSSNAKKLVYSSQIRNVPAVLLNT 463
Score = 39 (18.8 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 307 IGITSGASTPDKAVE 321
I +TS ASTP++ +
Sbjct: 478 IALTSAASTPEQETQ 492
>UNIPROTKB|Q8I295 [details] [associations]
symbol:lytB "LytB protein" species:36329 "Plasmodium
falciparum 3D7" [GO:0020011 "apicoplast" evidence=IDA]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 GO:GO:0055114
EMBL:AL844501 GO:GO:0019288 GO:GO:0020011 KO:K03527
TIGRFAMs:TIGR00216 HOGENOM:HOG000220192 GenomeReviews:AL844501_GR
RefSeq:XP_001350977.1 ProteinModelPortal:Q8I295 PRIDE:Q8I295
EnsemblProtists:PFA0225w:mRNA GeneID:813182 KEGG:pfa:PFA_0225w
ProtClustDB:CLSZ2431638 Uniprot:Q8I295
Length = 535
Score = 120 (47.3 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 37/132 (28%), Positives = 66/132 (50%)
Query: 7 EARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA 66
E K F + I++ ++I+HN V K+LE+ I +E+ + V G +++ A G
Sbjct: 243 ECLKLF-KPPIYVKHKIVHNDIVCKKLEKEGA--IFIED----LNDVPDGHILIYSAHGI 295
Query: 67 AVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGK 126
+ + K + +D TCP V+KV V+ K +Y I+ G +H E + T + A
Sbjct: 296 SPQIREIAKKKKLIEIDATCPLVNKVHVYVQMKAKENYDIILIGYKNHVEVIGTYNEAPH 355
Query: 127 YI-IVKNMKEAE 137
IV+N+ + +
Sbjct: 356 CTHIVENVNDVD 367
Score = 85 (35.0 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKM 236
K+ QTT+ ++ +V+K + KF +E + +IC AT RQ A+ K+
Sbjct: 376 KLFYVTQTTL---SMDDCALIVQK-LKNKFPHIETIPS-----GSICYATTNRQTALNKI 426
Query: 237 VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274
K DL +VVG +SSN L ++ R +P+ +++
Sbjct: 427 CT-KCDLTIVVGSSSSSNAKKLVYSSQIRNVPAVLLNT 463
Score = 39 (18.8 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 307 IGITSGASTPDKAVE 321
I +TS ASTP++ +
Sbjct: 478 IALTSAASTPEQETQ 492
>TIGR_CMR|APH_0380 [details] [associations]
symbol:APH_0380 "4-hydroxy-3-methylbut-2-enyl diphosphate
reductase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0009240 "isopentenyl diphosphate biosynthetic process"
evidence=ISS] [GO:0015968 "stringent response" evidence=ISS]
[GO:0042380 "hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288 GO:GO:0050992
KO:K03527 GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220192 ProtClustDB:PRK01045 RefSeq:YP_504986.1
STRING:Q2GKW5 GeneID:3931091 KEGG:aph:APH_0380 PATRIC:20949366
OMA:EENIEFR BioCyc:APHA212042:GHPM-408-MONOMER Uniprot:Q2GKW5
Length = 324
Score = 130 (50.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 54/238 (22%), Positives = 99/238 (41%)
Query: 15 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 74
+++++ +EI+HN V +E +N+ D V G V+V A G A +
Sbjct: 40 KEVYVLHEIVHNAYV---VESFRKRNVKFVAS---LDEVPTGAVLVFSAHGVAKQVRAAA 93
Query: 75 NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVAT-ASFAGKYIIVKNM 133
+ + ++D TCP V+KV + ++ K Y I+ G H E + + ++V+N+
Sbjct: 94 QERGLVVIDATCPLVTKVHLEIHRYNKNGYKIILIGHKGHREVEGSMGQIQSEVLLVQNV 153
Query: 134 KE-------AEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTT 186
+ AE Y+ L S +E K PD+ + N+ T
Sbjct: 154 DDVYNLPVDAETKLAYVTQTTL--SVDDTRVIVEALKTRFPDIVGPDLKDICYATQNRQT 211
Query: 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE-EKVDL 243
+K E+ +V+ +M G +N + + N + D + R + + E VDL
Sbjct: 212 AVK----ELASMVD--VMLIMGGKNSS----NTNRLLDLAKVRNPRSFLIGSYEDVDL 259
Score = 106 (42.4 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 222 ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274
IC ATQ RQ A+ K + VD++L++GG NSSNT+ L ++A+ R S+ I S
Sbjct: 202 ICYATQNRQTAV-KELASMVDVMLIMGGKNSSNTNRLLDLAKVRNPRSFLIGS 253
Score = 55 (24.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 307 IGITSGASTPDKAVEDVLK 325
IG+T+GAS P VE++LK
Sbjct: 268 IGVTAGASAPAILVEELLK 286
>TIGR_CMR|DET_1344 [details] [associations]
symbol:DET_1344 "hydroxymethylbutenyl pyrophosphate
reductase" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0015968 "stringent response" evidence=ISS] [GO:0042380
"hydroxymethylbutenyl pyrophosphate reductase activity"
evidence=ISS] [GO:0046677 "response to antibiotic" evidence=ISS]
HAMAP:MF_00191 InterPro:IPR003451 Pfam:PF02401 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 GO:GO:0051538 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019288 GO:GO:0050992 KO:K03527
GO:GO:0051745 TIGRFAMs:TIGR00216 eggNOG:COG0761
HOGENOM:HOG000220193 OMA:LVTKVHQ RefSeq:YP_182055.1 STRING:Q3Z6U4
GeneID:3229386 KEGG:det:DET1344 PATRIC:21609717
ProtClustDB:CLSK836989 BioCyc:DETH243164:GJNF-1345-MONOMER
Uniprot:Q3Z6U4
Length = 284
Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 32/111 (28%), Positives = 62/111 (55%)
Query: 172 PDVDLVKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ 230
PDV +G+ +QTT + G T + ++++ +++ + I+ +T+C +ERQ
Sbjct: 149 PDVSRY-IGVLSQTTQIPTGFTSFVKNVIDQALVKDAEIR------IA-DTLCHDIRERQ 200
Query: 231 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPG 281
A ++ +VDL+LV+GG NS+NT HL ++ + +Y I++ + G
Sbjct: 201 TAALELAG-RVDLMLVIGGHNSANTRHLLDLCKTVS-NTYLIETASELQTG 249
Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/159 (23%), Positives = 72/159 (45%)
Query: 23 IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 82
++HN V RL M V+ + K + ++ G V + + G + L +K +++V
Sbjct: 38 LVHNQQVLNRLSGMGVRVV------KNIEDIS-GRTVAISSHGVGPLVLDELKSKGLEVV 90
Query: 83 DTTCPWVSKVWTSVEK-HKKGDYTSIIHGKYSHEETVATASFAG----KYIIVKNMKEAE 137
DTTCP+V + + ++ H G +T +I+G +H E +AG + + + +
Sbjct: 91 DTTCPFVKRAQVAAKRFHDAGFFT-VIYGDVNHPEVKGIMGWAGGDGLATLNPQGLVDVP 149
Query: 138 YVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDL 176
V YI G L+ ++ F K + + D ++
Sbjct: 150 DVSRYI--GVLSQTTQIPTGFTSFVKNVIDQALVKDAEI 186
Score = 59 (25.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 299 WLPKGQITIGITSGASTPDKAVEDV 323
WL +G IGITSGAST + + +V
Sbjct: 250 WL-RGVNRIGITSGASTDETTISEV 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 339 339 0.00094 116 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 607 (65 KB)
Total size of DFA: 227 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.77u 0.10s 30.87t Elapsed: 00:00:01
Total cpu time: 30.77u 0.10s 30.87t Elapsed: 00:00:01
Start: Thu May 9 16:36:55 2013 End: Thu May 9 16:36:56 2013