Query 019556
Match_columns 339
No_of_seqs 116 out of 1068
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02821 1-hydroxy-2-methyl-2- 100.0 5E-104 1E-108 787.9 34.3 338 1-338 123-460 (460)
2 PRK13371 4-hydroxy-3-methylbut 100.0 3.8E-97 8E-102 729.2 34.1 326 1-332 55-380 (387)
3 TIGR00216 ispH_lytB (E)-4-hydr 100.0 1.4E-91 3E-96 668.2 29.2 262 1-330 17-280 (280)
4 PRK12360 4-hydroxy-3-methylbut 100.0 1.8E-91 3.9E-96 667.6 29.6 263 1-330 18-281 (281)
5 PF02401 LYTB: LytB protein; 100.0 5.6E-92 1.2E-96 671.5 20.8 264 1-330 16-281 (281)
6 PRK01045 ispH 4-hydroxy-3-meth 100.0 1.8E-90 3.9E-95 665.4 30.4 264 1-332 18-284 (298)
7 COG0761 lytB 4-Hydroxy-3-methy 100.0 6.4E-90 1.4E-94 651.9 28.8 265 1-331 19-285 (294)
8 PRK00087 4-hydroxy-3-methylbut 100.0 5.2E-83 1.1E-87 668.3 29.8 261 1-331 18-279 (647)
9 PF02401 LYTB: LytB protein; 95.8 0.08 1.7E-06 51.6 10.6 155 14-201 111-280 (281)
10 TIGR00216 ispH_lytB (E)-4-hydr 92.1 1.5 3.3E-05 42.8 10.6 168 85-331 10-180 (280)
11 PRK01045 ispH 4-hydroxy-3-meth 92.0 1.4 3E-05 43.4 10.4 153 15-201 114-281 (298)
12 PRK12360 4-hydroxy-3-methylbut 90.3 2.3 5.1E-05 41.5 9.9 167 85-330 11-182 (281)
13 cd01537 PBP1_Repressors_Sugar_ 89.3 3.1 6.7E-05 36.7 9.3 90 178-277 1-90 (264)
14 PRK00087 4-hydroxy-3-methylbut 86.0 5.2 0.00011 43.1 10.2 166 85-330 11-179 (647)
15 PF02571 CbiJ: Precorrin-6x re 84.3 4.4 9.5E-05 38.7 7.8 117 17-139 3-124 (249)
16 COG1023 Gnd Predicted 6-phosph 83.4 11 0.00024 36.8 9.9 104 3-113 14-122 (300)
17 PRK08057 cobalt-precorrin-6x r 80.8 7.6 0.00017 37.1 8.0 116 17-139 5-123 (248)
18 PF13407 Peripla_BP_4: Peripla 80.1 12 0.00026 33.8 8.8 88 179-275 1-89 (257)
19 PF03446 NAD_binding_2: NAD bi 79.3 6.2 0.00013 34.5 6.4 93 4-107 16-116 (163)
20 COG3340 PepE Peptidase E [Amin 79.1 1.7 3.6E-05 41.2 2.8 97 177-314 33-129 (224)
21 PRK05282 (alpha)-aspartyl dipe 78.4 4.9 0.00011 38.1 5.8 94 177-315 32-125 (233)
22 cd01391 Periplasmic_Binding_Pr 78.3 15 0.00032 31.8 8.5 93 179-278 2-94 (269)
23 cd08191 HHD 6-hydroxyhexanoate 78.1 14 0.00029 37.1 9.2 79 177-265 23-104 (386)
24 PF00532 Peripla_BP_1: Peripla 78.1 56 0.0012 30.9 13.0 138 178-330 3-145 (279)
25 COG1587 HemD Uroporphyrinogen- 77.1 20 0.00044 33.5 9.6 86 14-105 79-177 (248)
26 cd06281 PBP1_LacI_like_5 Ligan 74.7 60 0.0013 29.4 11.8 122 179-314 2-126 (269)
27 PRK13371 4-hydroxy-3-methylbut 74.7 15 0.00033 37.6 8.5 111 78-202 263-378 (387)
28 cd06320 PBP1_allose_binding Pe 73.7 21 0.00046 32.4 8.6 89 179-275 2-91 (275)
29 cd04509 PBP1_ABC_transporter_G 73.3 26 0.00056 31.4 8.9 60 214-276 41-101 (299)
30 cd06273 PBP1_GntR_like_1 This 72.6 72 0.0016 28.6 13.0 85 179-275 2-87 (268)
31 PRK04175 rpl7ae 50S ribosomal 72.3 13 0.00029 31.7 6.4 74 239-331 45-121 (122)
32 cd06310 PBP1_ABC_sugar_binding 72.2 26 0.00057 31.7 8.8 90 178-275 1-91 (273)
33 PF14542 Acetyltransf_CG: GCN5 71.2 4.2 9E-05 31.9 2.8 34 61-95 34-71 (78)
34 TIGR03677 rpl7ae 50S ribosomal 70.9 15 0.00034 31.0 6.5 73 239-330 41-116 (117)
35 cd06331 PBP1_AmiC_like Type I 70.9 17 0.00037 34.5 7.6 56 214-271 41-96 (333)
36 cd06319 PBP1_ABC_sugar_binding 70.9 37 0.0008 30.7 9.5 88 179-275 2-89 (277)
37 cd06286 PBP1_CcpB_like Ligand- 70.8 79 0.0017 28.3 11.6 114 187-313 9-123 (260)
38 PRK10014 DNA-binding transcrip 70.6 85 0.0018 29.7 12.2 126 177-315 65-193 (342)
39 cd06308 PBP1_sensor_kinase_lik 70.3 34 0.00074 31.0 9.1 89 179-275 2-90 (270)
40 cd01536 PBP1_ABC_sugar_binding 70.1 43 0.00094 29.7 9.6 89 179-276 2-90 (267)
41 cd06342 PBP1_ABC_LIVBP_like Ty 70.0 6.8 0.00015 36.8 4.5 58 214-274 41-98 (334)
42 COG2099 CobK Precorrin-6x redu 69.5 21 0.00046 34.6 7.7 116 16-139 4-123 (257)
43 PRK13600 putative ribosomal pr 68.3 6.9 0.00015 31.7 3.6 42 239-280 28-69 (84)
44 cd06349 PBP1_ABC_ligand_bindin 68.2 7.9 0.00017 36.9 4.6 56 214-271 41-96 (340)
45 TIGR02069 cyanophycinase cyano 67.8 10 0.00022 36.2 5.2 52 232-314 76-127 (250)
46 PF10087 DUF2325: Uncharacteri 66.8 12 0.00027 30.0 4.8 51 223-274 30-83 (97)
47 PF06414 Zeta_toxin: Zeta toxi 66.1 12 0.00025 33.7 5.1 42 69-110 84-126 (199)
48 cd06268 PBP1_ABC_transporter_L 64.9 41 0.00089 30.0 8.4 60 215-277 42-101 (298)
49 PRK14072 6-phosphofructokinase 63.8 9.4 0.0002 39.2 4.4 47 226-272 89-138 (416)
50 cd06312 PBP1_ABC_sugar_binding 63.7 45 0.00097 30.3 8.5 91 178-275 1-91 (271)
51 cd03146 GAT1_Peptidase_E Type 62.1 14 0.00031 33.9 4.9 71 177-266 32-102 (212)
52 cd06301 PBP1_rhizopine_binding 62.0 51 0.0011 29.8 8.6 88 179-275 2-90 (272)
53 cd06344 PBP1_ABC_ligand_bindin 61.8 12 0.00025 35.8 4.4 56 214-271 40-95 (332)
54 TIGR00715 precor6x_red precorr 61.5 26 0.00056 33.6 6.7 105 26-139 12-121 (256)
55 cd06318 PBP1_ABC_sugar_binding 60.2 72 0.0016 29.0 9.2 87 179-275 2-89 (282)
56 cd08551 Fe-ADH iron-containing 59.9 51 0.0011 32.6 8.7 77 177-263 24-103 (370)
57 cd06367 PBP1_iGluR_NMDA N-term 59.8 27 0.00058 33.8 6.6 58 212-271 35-95 (362)
58 cd06335 PBP1_ABC_ligand_bindin 58.7 14 0.00031 35.5 4.5 56 214-271 41-96 (347)
59 cd06356 PBP1_Amide_Urea_BP_lik 58.2 11 0.00023 36.3 3.5 56 214-271 41-96 (334)
60 cd02958 UAS UAS family; UAS is 58.2 76 0.0017 25.7 8.2 70 231-328 43-112 (114)
61 TIGR02764 spore_ybaN_pdaB poly 56.8 1.2E+02 0.0025 26.9 9.8 27 16-42 99-125 (191)
62 cd01413 SIR2_Af2 SIR2_Af2: Arc 56.5 23 0.00051 32.9 5.4 42 232-274 164-206 (222)
63 COG1358 RPL8A Ribosomal protei 56.5 31 0.00068 29.5 5.7 43 238-280 41-84 (116)
64 cd06267 PBP1_LacI_sugar_bindin 55.7 78 0.0017 27.8 8.5 120 179-315 2-127 (264)
65 cd06296 PBP1_CatR_like Ligand- 55.6 1.5E+02 0.0034 26.5 11.1 121 179-315 2-128 (270)
66 cd00861 ProRS_anticodon_short 55.2 17 0.00036 28.2 3.6 42 69-113 22-65 (94)
67 COG1570 XseA Exonuclease VII, 55.0 55 0.0012 34.2 8.2 76 175-260 134-219 (440)
68 PRK09453 phosphodiesterase; Pr 54.3 75 0.0016 28.0 8.0 30 14-43 28-71 (182)
69 cd06343 PBP1_ABC_ligand_bindin 54.1 58 0.0013 31.2 7.9 57 214-272 48-104 (362)
70 cd06338 PBP1_ABC_ligand_bindin 53.7 22 0.00048 33.7 4.9 60 214-275 45-104 (345)
71 PRK06555 pyrophosphate--fructo 53.7 20 0.00043 36.9 4.7 46 227-272 99-147 (403)
72 PF01726 LexA_DNA_bind: LexA D 53.7 15 0.00032 28.1 2.9 39 61-106 19-57 (65)
73 cd08188 Fe-ADH4 Iron-containin 53.6 65 0.0014 32.2 8.3 79 177-265 29-110 (377)
74 cd06328 PBP1_SBP_like_2 Peripl 53.4 19 0.00041 34.5 4.3 115 214-330 42-163 (333)
75 PRK09860 putative alcohol dehy 52.8 86 0.0019 31.5 9.1 80 177-266 32-114 (383)
76 COG0041 PurE Phosphoribosylcar 52.7 40 0.00087 30.5 5.9 35 58-114 34-68 (162)
77 PF03575 Peptidase_S51: Peptid 52.7 10 0.00022 33.0 2.1 65 220-315 17-81 (154)
78 cd06323 PBP1_ribose_binding Pe 52.7 99 0.0021 27.6 8.7 81 187-276 9-90 (268)
79 cd06345 PBP1_ABC_ligand_bindin 52.5 21 0.00045 34.1 4.5 57 214-272 41-97 (344)
80 smart00852 MoCF_biosynth Proba 52.2 14 0.0003 31.2 2.9 63 251-328 16-83 (135)
81 cd06311 PBP1_ABC_sugar_binding 51.7 99 0.0021 28.1 8.7 92 179-275 2-94 (274)
82 PRK10653 D-ribose transporter 51.6 1.5E+02 0.0032 27.6 10.0 90 176-275 26-116 (295)
83 cd06346 PBP1_ABC_ligand_bindin 51.5 12 0.00027 35.3 2.7 56 214-271 41-97 (312)
84 COG1609 PurR Transcriptional r 51.5 2.4E+02 0.0053 27.5 12.8 137 177-327 59-198 (333)
85 cd06282 PBP1_GntR_like_2 Ligan 51.0 1E+02 0.0023 27.4 8.6 78 189-275 11-88 (266)
86 TIGR02634 xylF D-xylose ABC tr 51.0 76 0.0017 29.9 8.0 85 183-276 4-89 (302)
87 PF02254 TrkA_N: TrkA-N domain 50.9 29 0.00063 27.8 4.5 73 59-139 2-77 (116)
88 cd06382 PBP1_iGluR_Kainate N-t 50.5 16 0.00034 34.7 3.3 52 217-271 40-92 (327)
89 PF00389 2-Hacid_dh: D-isomer 50.5 27 0.00058 29.2 4.4 84 17-107 1-87 (133)
90 PLN02251 pyrophosphate-depende 50.5 24 0.00051 37.9 4.8 44 226-269 176-220 (568)
91 PRK05562 precorrin-2 dehydroge 50.4 59 0.0013 30.8 7.0 71 241-331 86-160 (223)
92 cd06299 PBP1_LacI_like_13 Liga 50.0 1.9E+02 0.0041 25.8 11.4 125 179-317 2-129 (265)
93 cd03145 GAT1_cyanophycinase Ty 49.6 35 0.00075 31.6 5.3 99 177-315 30-129 (217)
94 cd06276 PBP1_FucR_like Ligand- 49.6 1.1E+02 0.0023 28.0 8.5 82 229-314 41-127 (247)
95 PLN02821 1-hydroxy-2-methyl-2- 48.8 1.1E+02 0.0023 32.3 9.1 111 77-201 336-451 (460)
96 cd06339 PBP1_YraM_LppC_lipopro 48.6 53 0.0012 31.6 6.7 97 214-314 35-134 (336)
97 cd06315 PBP1_ABC_sugar_binding 48.6 1.1E+02 0.0025 28.1 8.6 88 178-275 2-90 (280)
98 PF04392 ABC_sub_bind: ABC tra 48.5 33 0.00072 32.6 5.2 47 224-271 169-216 (294)
99 cd06355 PBP1_FmdD_like Peripla 48.3 20 0.00044 34.6 3.7 53 214-268 41-93 (348)
100 PF00994 MoCF_biosynth: Probab 48.2 9.1 0.0002 32.7 1.2 69 250-329 14-83 (144)
101 cd07766 DHQ_Fe-ADH Dehydroquin 48.1 81 0.0018 30.5 7.9 87 177-275 24-113 (332)
102 cd06329 PBP1_SBP_like_3 Peripl 47.8 15 0.00032 35.2 2.7 113 214-329 41-169 (342)
103 PRK00414 gmhA phosphoheptose i 47.4 99 0.0021 28.0 7.8 55 220-277 93-149 (192)
104 cd06306 PBP1_TorT-like TorT-li 47.4 1E+02 0.0023 28.1 8.1 87 179-274 2-89 (268)
105 cd07394 MPP_Vps29 Homo sapiens 47.4 1.3E+02 0.0029 26.7 8.6 83 15-118 31-121 (178)
106 PF04273 DUF442: Putative phos 47.3 1.7E+02 0.0037 24.5 8.7 85 16-113 8-96 (110)
107 TIGR02638 lactal_redase lactal 47.0 93 0.002 31.1 8.3 79 177-265 30-111 (379)
108 PRK10444 UMP phosphatase; Prov 46.9 1.2E+02 0.0025 28.7 8.5 30 9-42 77-106 (248)
109 cd06357 PBP1_AmiC Periplasmic 46.8 79 0.0017 30.7 7.6 55 214-270 41-95 (360)
110 cd01575 PBP1_GntR Ligand-bindi 46.7 2.1E+02 0.0046 25.4 11.7 85 179-275 2-87 (268)
111 cd06298 PBP1_CcpA_like Ligand- 46.4 2.2E+02 0.0047 25.4 12.0 85 179-275 2-87 (268)
112 cd01410 SIRT7 SIRT7: Eukaryoti 46.4 40 0.00087 31.1 5.2 58 215-275 133-191 (206)
113 PRK10877 protein disulfide iso 46.3 21 0.00045 33.6 3.3 31 80-110 113-143 (232)
114 TIGR02477 PFKA_PPi diphosphate 46.2 29 0.00063 37.0 4.7 42 226-267 147-189 (539)
115 cd08176 LPO Lactadehyde:propan 46.2 79 0.0017 31.5 7.6 79 177-265 29-110 (377)
116 PF02602 HEM4: Uroporphyrinoge 45.8 80 0.0017 28.4 7.0 100 15-140 74-184 (231)
117 PF15498 Dendrin: Nephrin and 45.7 4.5 9.7E-05 42.1 -1.3 33 58-90 378-410 (657)
118 PRK06718 precorrin-2 dehydroge 45.7 60 0.0013 29.8 6.2 74 240-334 70-147 (202)
119 PLN02884 6-phosphofructokinase 45.7 27 0.00058 36.0 4.2 45 228-272 131-178 (411)
120 PRK05752 uroporphyrinogen-III 44.7 2E+02 0.0044 26.7 9.8 64 15-83 84-158 (255)
121 cd06340 PBP1_ABC_ligand_bindin 44.7 35 0.00076 32.8 4.7 58 214-273 44-101 (347)
122 cd06309 PBP1_YtfQ_like Peripla 44.6 1.1E+02 0.0023 27.8 7.7 80 187-275 9-89 (273)
123 cd06292 PBP1_LacI_like_10 Liga 44.6 2.4E+02 0.0051 25.4 11.7 81 187-275 9-92 (273)
124 cd01409 SIRT4 SIRT4: Eukaryoti 44.4 37 0.0008 32.5 4.8 45 229-275 195-240 (260)
125 cd02518 GT2_SpsF SpsF is a gly 43.9 61 0.0013 29.5 5.9 43 77-119 89-134 (233)
126 cd01574 PBP1_LacI Ligand-bindi 43.9 2.4E+02 0.0051 25.2 12.5 88 179-277 2-90 (264)
127 TIGR03669 urea_ABC_arch urea A 43.7 25 0.00054 34.9 3.6 55 214-270 42-96 (374)
128 cd06337 PBP1_ABC_ligand_bindin 43.7 35 0.00075 33.1 4.5 56 214-271 43-98 (357)
129 PF14359 DUF4406: Domain of un 43.4 31 0.00068 28.0 3.5 32 239-270 58-90 (92)
130 cd06327 PBP1_SBP_like_1 Peripl 43.1 27 0.00059 33.2 3.6 57 214-272 40-96 (334)
131 PLN03028 pyrophosphate--fructo 43.1 36 0.00078 36.9 4.9 46 227-272 160-208 (610)
132 PF01904 DUF72: Protein of unk 43.1 74 0.0016 29.7 6.5 78 20-110 125-211 (230)
133 TIGR01768 GGGP-family geranylg 43.0 1.6E+02 0.0035 27.9 8.7 77 232-330 19-100 (223)
134 PRK13936 phosphoheptose isomer 43.0 84 0.0018 28.5 6.7 38 239-276 110-148 (197)
135 cd06348 PBP1_ABC_ligand_bindin 42.9 35 0.00077 32.4 4.4 56 214-271 41-96 (344)
136 cd06270 PBP1_GalS_like Ligand 42.8 2.5E+02 0.0055 25.2 11.5 76 189-275 11-87 (268)
137 TIGR02417 fruct_sucro_rep D-fr 42.7 2.9E+02 0.0063 25.9 13.2 125 177-315 61-189 (327)
138 COG0761 lytB 4-Hydroxy-3-methy 42.5 1.1E+02 0.0024 30.3 7.7 102 68-201 174-283 (294)
139 PRK10355 xylF D-xylose transpo 42.4 1.8E+02 0.004 28.0 9.4 89 177-275 26-115 (330)
140 cd06363 PBP1_Taste_receptor Li 42.4 28 0.0006 34.6 3.7 31 241-271 106-136 (410)
141 PTZ00409 Sir2 (Silent Informat 42.4 58 0.0012 31.6 5.8 58 215-275 177-235 (271)
142 PF13986 DUF4224: Domain of un 42.1 22 0.00049 25.5 2.2 26 29-64 20-45 (47)
143 TIGR03127 RuMP_HxlB 6-phospho 42.0 1.6E+02 0.0035 25.7 8.2 77 2-82 20-103 (179)
144 PRK09190 hypothetical protein; 41.9 78 0.0017 30.0 6.4 85 186-280 82-173 (220)
145 cd06330 PBP1_Arsenic_SBP_like 41.7 43 0.00092 31.8 4.8 58 215-275 42-100 (346)
146 cd01539 PBP1_GGBP Periplasmic 41.6 1.7E+02 0.0036 27.5 8.7 89 179-275 2-91 (303)
147 cd06304 PBP1_BmpA_like Peripla 41.6 2E+02 0.0043 26.1 9.0 86 178-275 1-89 (260)
148 cd06353 PBP1_BmpA_Med_like Per 41.4 1.5E+02 0.0033 27.7 8.4 87 225-317 42-133 (258)
149 cd01538 PBP1_ABC_xylose_bindin 41.2 2.6E+02 0.0056 25.8 9.8 87 179-275 2-89 (288)
150 cd06341 PBP1_ABC_ligand_bindin 41.0 1.6E+02 0.0034 27.9 8.5 112 214-329 41-159 (341)
151 TIGR03190 benz_CoA_bzdN benzoy 40.9 1.2E+02 0.0026 30.4 8.1 89 15-113 230-324 (377)
152 cd06302 PBP1_LsrB_Quorum_Sensi 40.9 2E+02 0.0043 26.8 9.1 87 179-275 2-90 (298)
153 TIGR01081 mpl UDP-N-acetylmura 40.8 2.1E+02 0.0046 29.0 9.9 71 4-82 15-88 (448)
154 cd08189 Fe-ADH5 Iron-containin 40.4 1.9E+02 0.0041 28.8 9.2 78 177-265 27-108 (374)
155 cd01412 SIRT5_Af1_CobB SIRT5_A 40.2 55 0.0012 30.2 5.1 43 231-275 157-200 (224)
156 COG1648 CysG Siroheme synthase 40.1 90 0.002 29.1 6.5 73 243-330 73-146 (210)
157 PTZ00287 6-phosphofructokinase 39.8 41 0.00088 39.8 4.9 44 226-269 914-958 (1419)
158 cd00419 Ferrochelatase_C Ferro 39.6 37 0.0008 29.3 3.6 37 55-102 17-53 (135)
159 TIGR01481 ccpA catabolite cont 39.6 3.2E+02 0.007 25.5 12.5 124 177-314 60-186 (329)
160 cd00738 HGTP_anticodon HGTP an 39.6 57 0.0012 24.8 4.4 41 70-113 23-65 (94)
161 cd01540 PBP1_arabinose_binding 39.5 1.8E+02 0.0039 26.5 8.4 47 228-275 41-88 (289)
162 PRK14138 NAD-dependent deacety 39.5 48 0.001 31.4 4.7 58 214-274 155-213 (244)
163 cd06366 PBP1_GABAb_receptor Li 39.4 35 0.00076 32.6 3.8 56 214-271 40-95 (350)
164 cd00765 Pyrophosphate_PFK Phos 39.3 44 0.00096 35.8 4.8 41 227-267 153-194 (550)
165 cd06294 PBP1_ycjW_transcriptio 39.3 2.8E+02 0.0061 24.7 12.2 46 228-276 47-93 (270)
166 PF15608 PELOTA_1: PELOTA RNA 38.9 55 0.0012 27.5 4.3 38 231-269 46-83 (100)
167 COG2861 Uncharacterized protei 38.8 66 0.0014 31.2 5.4 69 29-117 143-219 (250)
168 PRK06683 hypothetical protein; 38.7 40 0.00086 26.9 3.4 42 239-280 26-67 (82)
169 cd08187 BDH Butanol dehydrogen 38.2 1.5E+02 0.0033 29.6 8.2 77 177-263 29-109 (382)
170 TIGR00732 dprA DNA protecting 38.1 74 0.0016 29.7 5.6 35 241-275 156-190 (220)
171 cd06354 PBP1_BmpA_PnrA_like Pe 38.1 2.3E+02 0.005 26.0 8.9 117 187-315 12-132 (265)
172 cd06314 PBP1_tmGBP Periplasmic 38.0 2.1E+02 0.0046 25.8 8.6 86 179-275 2-88 (271)
173 TIGR03407 urea_ABC_UrtA urea A 38.0 36 0.00079 33.0 3.7 53 214-268 42-94 (359)
174 PRK05569 flavodoxin; Provision 37.9 1.1E+02 0.0023 25.6 6.1 21 243-264 4-24 (141)
175 cd06303 PBP1_LuxPQ_Quorum_Sens 37.8 1.8E+02 0.0039 26.7 8.2 44 227-272 46-90 (280)
176 PF13380 CoA_binding_2: CoA bi 37.7 62 0.0014 27.0 4.6 31 59-89 83-113 (116)
177 PRK02287 hypothetical protein; 37.7 76 0.0017 29.0 5.4 57 30-99 19-78 (171)
178 cd06336 PBP1_ABC_ligand_bindin 37.7 44 0.00094 32.1 4.2 59 215-276 46-104 (347)
179 PRK15404 leucine ABC transport 37.7 47 0.001 32.6 4.5 55 214-271 67-121 (369)
180 cd06280 PBP1_LacI_like_4 Ligan 37.6 3E+02 0.0066 24.6 10.2 122 179-315 2-126 (263)
181 PF13458 Peripla_BP_6: Peripla 37.5 33 0.00072 32.2 3.3 115 214-330 43-162 (343)
182 cd06347 PBP1_ABC_ligand_bindin 37.5 54 0.0012 30.6 4.7 59 214-274 41-99 (334)
183 COG2008 GLY1 Threonine aldolas 37.5 2.8E+02 0.0061 28.1 9.8 65 177-251 132-201 (342)
184 PRK07085 diphosphate--fructose 37.5 49 0.0011 35.4 4.8 46 227-272 151-199 (555)
185 PRK09701 D-allose transporter 37.4 2.2E+02 0.0048 26.9 8.9 91 177-275 25-116 (311)
186 cd01465 vWA_subgroup VWA subgr 37.3 38 0.00081 28.7 3.3 46 233-280 122-168 (170)
187 cd01542 PBP1_TreR_like Ligand- 37.1 2.3E+02 0.0051 25.1 8.6 84 180-275 3-87 (259)
188 PRK13602 putative ribosomal pr 36.9 47 0.001 26.3 3.5 45 235-280 22-67 (82)
189 PRK09526 lacI lac repressor; R 36.8 3.7E+02 0.0079 25.3 12.5 126 177-314 64-191 (342)
190 cd06372 PBP1_GC_G_like Ligand- 36.5 43 0.00093 32.8 4.0 63 215-279 43-106 (391)
191 PRK10624 L-1,2-propanediol oxi 36.4 1.8E+02 0.0038 29.1 8.4 79 177-265 31-112 (382)
192 COG1038 PycA Pyruvate carboxyl 36.4 49 0.0011 37.4 4.6 102 17-140 84-187 (1149)
193 cd06321 PBP1_ABC_sugar_binding 36.4 2.3E+02 0.005 25.5 8.5 89 179-275 2-91 (271)
194 cd06272 PBP1_hexuronate_repres 36.4 3.1E+02 0.0068 24.4 10.8 83 179-276 2-84 (261)
195 PRK10886 DnaA initiator-associ 36.3 69 0.0015 29.5 5.0 47 228-277 100-147 (196)
196 TIGR01470 cysG_Nterm siroheme 36.2 1E+02 0.0022 28.3 6.2 73 240-333 69-146 (205)
197 cd03130 GATase1_CobB Type 1 gl 36.2 2.2E+02 0.0048 25.7 8.4 68 27-109 14-81 (198)
198 COG1832 Predicted CoA-binding 36.0 86 0.0019 27.9 5.3 67 15-82 17-101 (140)
199 cd00758 MoCF_BD MoCF_BD: molyb 35.8 34 0.00074 29.0 2.8 68 250-328 16-84 (133)
200 PF05159 Capsule_synth: Capsul 35.6 43 0.00093 31.4 3.7 67 242-319 1-67 (269)
201 cd06322 PBP1_ABC_sugar_binding 35.4 2.5E+02 0.0054 25.1 8.6 81 186-275 8-89 (267)
202 cd00858 GlyRS_anticodon GlyRS 35.4 62 0.0013 26.8 4.2 55 55-113 26-88 (121)
203 cd06300 PBP1_ABC_sugar_binding 35.3 2.9E+02 0.0062 24.9 9.0 91 178-275 1-94 (272)
204 cd06324 PBP1_ABC_sugar_binding 35.2 2E+02 0.0043 27.0 8.1 77 189-275 12-91 (305)
205 PF00465 Fe-ADH: Iron-containi 35.0 1.2E+02 0.0026 29.9 6.8 78 178-266 23-104 (366)
206 PTZ00408 NAD-dependent deacety 34.9 69 0.0015 30.5 4.9 44 232-276 165-209 (242)
207 cd06305 PBP1_methylthioribose_ 34.9 3E+02 0.0064 24.7 9.0 87 179-275 2-89 (273)
208 cd05006 SIS_GmhA Phosphoheptos 34.9 2.5E+02 0.0054 24.6 8.2 38 239-276 100-138 (177)
209 cd08186 Fe-ADH8 Iron-containin 34.9 2.2E+02 0.0047 28.5 8.8 79 177-265 27-109 (383)
210 PRK14071 6-phosphofructokinase 34.7 51 0.0011 33.2 4.2 44 228-273 95-138 (360)
211 cd01543 PBP1_XylR Ligand-bindi 34.3 3.5E+02 0.0075 24.4 10.3 79 179-275 2-80 (265)
212 cd02201 FtsZ_type1 FtsZ is a G 34.3 91 0.002 30.3 5.8 44 230-274 75-122 (304)
213 COG1494 GlpX Fructose-1,6-bisp 34.3 24 0.00052 35.0 1.7 42 26-71 248-289 (332)
214 PRK12418 cysteinyl-tRNA synthe 34.2 50 0.0011 33.7 4.1 84 16-108 11-124 (384)
215 PRK00002 aroB 3-dehydroquinate 33.7 1.5E+02 0.0032 29.5 7.2 92 177-275 32-127 (358)
216 cd06359 PBP1_Nba_like Type I p 33.7 57 0.0012 31.0 4.2 57 214-272 39-95 (333)
217 cd08185 Fe-ADH1 Iron-containin 33.6 2.1E+02 0.0046 28.5 8.4 79 177-265 26-108 (380)
218 cd06350 PBP1_GPCR_family_C_lik 33.5 63 0.0014 30.6 4.5 55 215-271 53-120 (348)
219 PRK15461 NADH-dependent gamma- 33.5 2.4E+02 0.0052 27.0 8.5 92 4-106 16-116 (296)
220 PRK10423 transcriptional repre 33.4 4E+02 0.0087 24.8 11.8 125 177-314 57-184 (327)
221 PF10096 DUF2334: Uncharacteri 33.3 73 0.0016 30.1 4.8 61 60-121 3-85 (243)
222 cd00363 PFK Phosphofructokinas 33.2 52 0.0011 32.8 3.9 47 226-272 78-127 (338)
223 TIGR00441 gmhA phosphoheptose 33.1 2.7E+02 0.0059 24.0 8.1 39 239-277 78-117 (154)
224 PRK15408 autoinducer 2-binding 32.9 4.7E+02 0.01 25.5 13.0 129 176-316 23-160 (336)
225 TIGR00109 hemH ferrochelatase. 32.9 1E+02 0.0023 30.3 6.0 34 58-102 190-223 (322)
226 PRK13601 putative L7Ae-like ri 32.8 55 0.0012 26.2 3.3 42 239-280 23-64 (82)
227 PF00448 SRP54: SRP54-type pro 32.6 3.1E+02 0.0068 24.9 8.7 76 177-262 30-106 (196)
228 cd01080 NAD_bind_m-THF_DH_Cycl 32.5 61 0.0013 29.1 3.9 77 12-91 42-122 (168)
229 cd06289 PBP1_MalI_like Ligand- 32.1 3.6E+02 0.0079 23.9 11.5 86 179-275 2-88 (268)
230 PF03698 UPF0180: Uncharacteri 32.0 1.4E+02 0.003 24.0 5.5 48 28-76 12-77 (80)
231 cd01917 ACS_2 Acetyl-CoA synth 32.0 72 0.0016 31.5 4.6 38 73-110 114-161 (287)
232 cd06358 PBP1_NHase Type I peri 32.0 43 0.00094 31.8 3.1 54 214-270 41-94 (333)
233 PF13580 SIS_2: SIS domain; PD 31.9 55 0.0012 27.9 3.4 31 52-82 100-134 (138)
234 PF12146 Hydrolase_4: Putative 31.9 25 0.00054 27.5 1.2 49 58-125 17-65 (79)
235 cd08193 HVD 5-hydroxyvalerate 31.8 2.6E+02 0.0056 27.8 8.7 77 177-263 27-106 (376)
236 TIGR01668 YqeG_hyp_ppase HAD s 31.7 1.1E+02 0.0023 27.0 5.3 72 240-330 80-156 (170)
237 PRK11657 dsbG disulfide isomer 31.7 47 0.001 31.6 3.2 29 81-109 124-153 (251)
238 cd06352 PBP1_NPR_GC_like Ligan 31.6 55 0.0012 31.7 3.8 55 214-270 42-96 (389)
239 TIGR00064 ftsY signal recognit 31.5 2.9E+02 0.0062 26.5 8.6 77 177-263 101-178 (272)
240 PRK12435 ferrochelatase; Provi 31.4 1.1E+02 0.0024 30.1 5.9 71 16-102 139-209 (311)
241 PF01380 SIS: SIS domain SIS d 31.4 66 0.0014 26.0 3.7 46 51-96 49-98 (131)
242 cd00296 SIR2 SIR2 superfamily 31.3 1.1E+02 0.0025 27.6 5.6 46 229-276 160-206 (222)
243 cd02191 FtsZ FtsZ is a GTPase 31.1 1.1E+02 0.0024 30.0 5.7 44 230-274 75-122 (303)
244 cd06371 PBP1_sensory_GC_DEF_li 31.0 57 0.0012 32.2 3.8 52 215-270 43-94 (382)
245 cd01541 PBP1_AraR Ligand-bindi 31.0 3.5E+02 0.0075 24.4 8.8 85 179-275 2-92 (273)
246 cd06313 PBP1_ABC_sugar_binding 30.9 3E+02 0.0065 25.1 8.4 87 179-275 2-89 (272)
247 TIGR03863 PQQ_ABC_bind ABC tra 30.9 52 0.0011 32.5 3.6 108 216-329 37-154 (347)
248 cd06334 PBP1_ABC_ligand_bindin 30.8 51 0.0011 32.1 3.5 57 214-273 41-97 (351)
249 PRK09189 uroporphyrinogen-III 30.8 1.5E+02 0.0033 27.2 6.4 70 14-88 75-156 (240)
250 cd08173 Gro1PDH Sn-glycerol-1- 30.7 1.8E+02 0.004 28.4 7.3 87 177-276 26-112 (339)
251 TIGR02884 spore_pdaA delta-lac 30.6 3.9E+02 0.0086 24.6 9.2 85 17-110 132-221 (224)
252 cd06277 PBP1_LacI_like_1 Ligan 30.5 4E+02 0.0087 23.9 11.5 85 179-275 2-89 (268)
253 PF00455 DeoRC: DeoR C termina 30.5 50 0.0011 29.1 3.0 63 53-122 17-81 (161)
254 KOG2947 Carbohydrate kinase [C 30.5 89 0.0019 30.7 4.8 64 175-247 129-192 (308)
255 TIGR03151 enACPred_II putative 30.5 87 0.0019 30.7 5.0 49 56-109 87-135 (307)
256 PRK00481 NAD-dependent deacety 30.4 1.1E+02 0.0023 28.8 5.4 44 230-275 169-213 (242)
257 PF02310 B12-binding: B12 bind 30.2 82 0.0018 25.4 4.1 19 242-260 81-100 (121)
258 TIGR01752 flav_long flavodoxin 30.2 1.8E+02 0.0039 25.4 6.5 21 243-264 2-22 (167)
259 cd06332 PBP1_aromatic_compound 30.1 78 0.0017 29.5 4.4 58 215-275 40-98 (333)
260 cd06279 PBP1_LacI_like_3 Ligan 30.0 3.3E+02 0.0072 24.9 8.6 76 233-314 49-126 (283)
261 COG0378 HypB Ni2+-binding GTPa 29.7 96 0.0021 29.2 4.8 69 243-332 15-95 (202)
262 PRK15395 methyl-galactoside AB 29.7 3E+02 0.0064 26.4 8.5 90 177-275 25-115 (330)
263 cd06269 PBP1_glutamate_recepto 29.7 93 0.002 27.8 4.7 59 215-274 42-103 (298)
264 TIGR02483 PFK_mixed phosphofru 29.6 77 0.0017 31.5 4.5 44 227-273 81-124 (324)
265 PF00919 UPF0004: Uncharacteri 29.5 3.1E+02 0.0068 22.3 7.7 39 27-74 17-55 (98)
266 cd05013 SIS_RpiR RpiR-like pro 29.4 1.9E+02 0.0042 23.1 6.2 70 231-317 5-75 (139)
267 cd02513 CMP-NeuAc_Synthase CMP 29.4 3E+02 0.0064 24.3 7.9 38 77-114 99-138 (223)
268 TIGR01511 ATPase-IB1_Cu copper 29.4 1.9E+02 0.004 30.7 7.5 44 68-113 433-476 (562)
269 cd06271 PBP1_AglR_RafR_like Li 29.4 4E+02 0.0088 23.6 9.5 42 231-275 49-91 (268)
270 cd06836 PLPDE_III_ODC_DapDC_li 29.3 1.3E+02 0.0027 30.1 6.0 72 25-98 38-113 (379)
271 TIGR00290 MJ0570_dom MJ0570-re 29.2 1.4E+02 0.0031 28.1 6.0 53 61-113 40-95 (223)
272 COG4770 Acetyl/propionyl-CoA c 29.2 72 0.0016 34.6 4.3 98 20-139 82-180 (645)
273 PF08485 Polysacc_syn_2C: Poly 29.2 18 0.00039 26.5 -0.0 12 247-258 21-32 (48)
274 COG4822 CbiK Cobalamin biosynt 28.9 2E+02 0.0043 27.8 6.8 44 59-110 37-80 (265)
275 cd06333 PBP1_ABC-type_HAAT_lik 28.8 1.2E+02 0.0026 28.2 5.5 60 214-276 40-100 (312)
276 cd08182 HEPD Hydroxyethylphosp 28.6 3E+02 0.0064 27.3 8.4 76 177-264 24-101 (367)
277 PF01513 NAD_kinase: ATP-NAD k 28.6 52 0.0011 31.6 3.0 24 178-201 1-26 (285)
278 TIGR02482 PFKA_ATP 6-phosphofr 28.4 87 0.0019 30.8 4.6 44 227-272 78-121 (301)
279 TIGR00640 acid_CoA_mut_C methy 28.3 1.9E+02 0.0041 24.9 6.1 36 64-99 90-127 (132)
280 PTZ00365 60S ribosomal protein 28.1 1E+02 0.0022 30.2 4.8 70 243-329 150-221 (266)
281 PTZ00286 6-phospho-1-fructokin 28.0 81 0.0018 33.0 4.5 41 227-267 163-204 (459)
282 cd06381 PBP1_iGluR_delta_like 27.9 64 0.0014 32.0 3.6 54 216-272 39-92 (363)
283 PF10087 DUF2325: Uncharacteri 27.5 2.5E+02 0.0054 22.3 6.4 72 27-98 13-95 (97)
284 cd06360 PBP1_alkylbenzenes_lik 27.2 1.1E+02 0.0024 28.6 5.0 59 215-276 40-99 (336)
285 PRK10703 DNA-binding transcrip 27.2 5.3E+02 0.012 24.3 12.4 124 177-314 60-188 (341)
286 TIGR03590 PseG pseudaminic aci 27.0 60 0.0013 30.9 3.1 57 240-318 199-255 (279)
287 cd00763 Bacterial_PFK Phosphof 27.0 85 0.0019 31.1 4.3 43 226-272 78-121 (317)
288 PTZ00468 phosphofructokinase f 26.9 87 0.0019 37.0 4.8 41 227-267 183-224 (1328)
289 cd01407 SIR2-fam SIR2 family o 26.8 1.1E+02 0.0023 28.2 4.7 56 215-274 146-202 (218)
290 PF00701 DHDPS: Dihydrodipicol 26.8 2.7E+02 0.0058 26.5 7.6 60 186-253 50-109 (289)
291 TIGR00762 DegV EDD domain prot 26.6 2.6E+02 0.0056 26.6 7.4 72 31-111 14-86 (275)
292 cd06374 PBP1_mGluR_groupI Liga 26.5 80 0.0017 32.1 4.1 29 242-270 117-145 (472)
293 TIGR01357 aroB 3-dehydroquinat 26.4 2.3E+02 0.005 27.7 7.2 91 177-274 21-115 (344)
294 PRK00865 glutamate racemase; P 26.4 4.7E+02 0.01 24.8 9.1 90 4-110 20-117 (261)
295 PRK03803 murD UDP-N-acetylmura 26.4 5.5E+02 0.012 25.9 10.1 96 16-116 31-147 (448)
296 cd01544 PBP1_GalR Ligand-bindi 26.1 4.9E+02 0.011 23.5 10.8 35 236-275 49-83 (270)
297 cd05014 SIS_Kpsf KpsF-like pro 26.1 1E+02 0.0022 25.0 4.0 39 239-277 46-85 (128)
298 PRK00035 hemH ferrochelatase; 26.1 2.1E+02 0.0045 28.0 6.8 80 5-101 143-223 (333)
299 COG1307 DegV Uncharacterized p 26.0 2.3E+02 0.0049 27.6 6.9 70 32-110 17-88 (282)
300 cd06307 PBP1_uncharacterized_s 26.0 3E+02 0.0064 24.9 7.4 87 179-274 2-91 (275)
301 PRK13938 phosphoheptose isomer 26.0 1.3E+02 0.0028 27.7 5.0 56 220-277 95-151 (196)
302 PF05706 CDKN3: Cyclin-depende 25.8 65 0.0014 29.4 2.9 72 30-113 64-143 (168)
303 cd00544 CobU Adenosylcobinamid 25.7 75 0.0016 28.4 3.3 37 244-280 2-38 (169)
304 cd06274 PBP1_FruR Ligand bindi 25.6 4.7E+02 0.01 23.3 8.6 43 231-276 46-88 (264)
305 PLN02564 6-phosphofructokinase 25.5 1.5E+02 0.0032 31.5 5.8 53 228-280 164-217 (484)
306 cd01994 Alpha_ANH_like_IV This 25.3 1.8E+02 0.004 26.5 5.8 51 63-113 42-98 (194)
307 cd06297 PBP1_LacI_like_12 Liga 25.3 4.9E+02 0.011 23.6 8.7 45 228-275 42-87 (269)
308 TIGR01489 DKMTPPase-SF 2,3-dik 25.3 3.2E+02 0.007 23.2 7.2 19 95-113 153-172 (188)
309 COG2087 CobU Adenosyl cobinami 25.2 89 0.0019 28.8 3.7 38 243-280 2-39 (175)
310 TIGR00283 arch_pth2 peptidyl-t 25.0 1.3E+02 0.0028 25.6 4.4 60 245-328 52-113 (115)
311 PTZ00222 60S ribosomal protein 24.9 1.7E+02 0.0037 28.6 5.7 70 242-329 149-221 (263)
312 PRK06830 diphosphate--fructose 24.9 99 0.0022 32.2 4.4 45 228-272 160-207 (443)
313 TIGR03882 cyclo_dehyd_2 bacter 24.7 2.1E+02 0.0045 26.1 6.1 79 28-124 63-159 (193)
314 TIGR02637 RhaS rhamnose ABC tr 24.6 5E+02 0.011 24.0 8.9 48 227-275 42-90 (302)
315 KOG0238 3-Methylcrotonyl-CoA c 24.6 1E+02 0.0022 33.2 4.4 99 19-139 77-176 (670)
316 cd06373 PBP1_NPR_like Ligand b 24.5 96 0.0021 30.3 4.1 54 215-270 44-101 (396)
317 PRK13937 phosphoheptose isomer 24.5 1.6E+02 0.0034 26.5 5.2 38 239-276 105-143 (188)
318 PF01380 SIS: SIS domain SIS d 24.4 94 0.002 25.0 3.4 56 220-277 34-91 (131)
319 COG0205 PfkA 6-phosphofructoki 24.3 83 0.0018 31.8 3.6 43 228-272 82-124 (347)
320 PRK11557 putative DNA-binding 24.3 4.6E+02 0.01 24.5 8.6 46 230-277 167-213 (278)
321 TIGR00147 lipid kinase, YegS/R 24.2 1.9E+02 0.0042 27.3 6.0 17 239-255 56-72 (293)
322 cd06295 PBP1_CelR Ligand bindi 24.1 5.3E+02 0.012 23.2 8.8 39 234-275 58-96 (275)
323 cd06325 PBP1_ABC_uncharacteriz 23.9 3.6E+02 0.0077 24.3 7.5 89 179-275 2-90 (281)
324 PF03358 FMN_red: NADPH-depend 23.9 88 0.0019 26.3 3.3 23 243-265 3-26 (152)
325 cd02985 TRX_CDSP32 TRX family, 23.9 3.7E+02 0.008 21.3 6.8 80 216-325 20-101 (103)
326 PRK09417 mogA molybdenum cofac 23.8 96 0.0021 28.6 3.7 77 243-329 7-93 (193)
327 cd08190 HOT Hydroxyacid-oxoaci 23.7 2.6E+02 0.0057 28.4 7.2 79 177-265 24-105 (414)
328 PRK11303 DNA-binding transcrip 23.5 6.1E+02 0.013 23.6 12.9 89 177-276 62-151 (328)
329 cd08180 PDD 1,3-propanediol de 23.4 3.3E+02 0.0071 26.6 7.6 88 177-275 23-118 (332)
330 PF13483 Lactamase_B_3: Beta-l 23.4 1.4E+02 0.003 25.6 4.4 37 230-268 120-157 (163)
331 cd05710 SIS_1 A subgroup of th 23.4 1.2E+02 0.0026 25.0 4.0 39 239-277 46-85 (120)
332 cd06362 PBP1_mGluR Ligand bind 23.3 90 0.002 31.2 3.7 30 241-270 102-131 (452)
333 COG2515 Acd 1-aminocyclopropan 23.3 1.7E+02 0.0037 29.4 5.5 41 235-276 59-100 (323)
334 PRK05333 NAD-dependent deacety 23.2 1.6E+02 0.0034 28.5 5.2 45 228-274 204-249 (285)
335 COG2217 ZntA Cation transport 23.2 2.2E+02 0.0049 31.5 6.9 67 26-112 542-608 (713)
336 cd07948 DRE_TIM_HCS Saccharomy 22.8 6.7E+02 0.015 23.9 10.8 82 20-110 67-161 (262)
337 cd08175 G1PDH Glycerol-1-phosp 22.7 2.5E+02 0.0055 27.5 6.7 35 239-275 79-113 (348)
338 cd03129 GAT1_Peptidase_E_like 22.7 47 0.001 30.2 1.4 30 230-265 72-101 (210)
339 PF00702 Hydrolase: haloacid d 22.7 2E+02 0.0043 24.9 5.4 67 27-112 133-204 (215)
340 PF02882 THF_DHG_CYH_C: Tetrah 22.6 47 0.001 29.8 1.4 96 12-120 34-130 (160)
341 cd06335 PBP1_ABC_ligand_bindin 22.6 3.4E+02 0.0074 25.9 7.5 85 177-272 139-223 (347)
342 cd06368 PBP1_iGluR_non_NMDA_li 22.4 1.4E+02 0.003 28.0 4.6 48 223-273 46-93 (324)
343 cd06283 PBP1_RegR_EndR_KdgR_li 22.4 5.5E+02 0.012 22.7 8.4 42 231-275 46-87 (267)
344 cd06316 PBP1_ABC_sugar_binding 22.0 6.2E+02 0.013 23.2 9.0 88 178-275 1-90 (294)
345 PRK11337 DNA-binding transcrip 21.9 1.7E+02 0.0036 27.8 5.1 56 221-277 169-225 (292)
346 PRK03202 6-phosphofructokinase 21.9 1.1E+02 0.0025 30.3 4.0 43 226-272 79-122 (320)
347 cd00027 BRCT Breast Cancer Sup 21.8 2.7E+02 0.0058 18.9 6.7 58 16-83 3-63 (72)
348 cd08192 Fe-ADH7 Iron-containin 21.7 3.2E+02 0.0069 27.1 7.2 77 177-264 25-105 (370)
349 TIGR02144 LysX_arch Lysine bio 21.7 2.3E+02 0.005 26.3 5.9 59 25-83 11-77 (280)
350 PF14258 DUF4350: Domain of un 21.5 3.4E+02 0.0074 20.0 5.9 42 30-74 11-56 (70)
351 PRK11543 gutQ D-arabinose 5-ph 21.5 2.9E+02 0.0064 26.4 6.8 54 219-276 24-78 (321)
352 PRK06719 precorrin-2 dehydroge 21.5 4.4E+02 0.0095 23.1 7.3 73 240-333 70-146 (157)
353 PRK02649 ppnK inorganic polyph 21.3 1.2E+02 0.0026 29.9 4.1 26 234-265 63-88 (305)
354 PF00365 PFK: Phosphofructokin 21.3 56 0.0012 31.7 1.8 43 228-272 80-122 (282)
355 cd04795 SIS SIS domain. SIS (S 21.3 1.5E+02 0.0032 22.1 3.8 34 239-272 46-80 (87)
356 PRK10669 putative cation:proto 21.3 1.4E+02 0.0029 31.5 4.7 69 55-131 417-488 (558)
357 PF00762 Ferrochelatase: Ferro 21.2 75 0.0016 31.3 2.6 81 3-102 136-219 (316)
358 PF00994 MoCF_biosynth: Probab 21.1 1.6E+02 0.0034 25.0 4.3 46 221-267 37-83 (144)
359 PRK03170 dihydrodipicolinate s 20.9 3.2E+02 0.0069 26.1 6.8 102 153-269 19-130 (292)
360 PF02608 Bmp: Basic membrane p 20.9 1.9E+02 0.0041 27.9 5.3 129 178-318 3-143 (306)
361 PRK05800 cobU adenosylcobinami 20.8 1.5E+02 0.0032 26.4 4.2 37 243-279 3-39 (170)
362 TIGR01125 MiaB-like tRNA modif 20.7 1.3E+02 0.0029 30.5 4.3 28 84-111 43-74 (430)
363 PRK06186 hypothetical protein; 20.7 4.1E+02 0.0089 25.3 7.3 81 178-270 3-86 (229)
364 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.6 1.5E+02 0.0033 23.9 4.0 38 239-276 45-83 (126)
365 TIGR01508 rib_reduct_arch 2,5- 20.5 2.4E+02 0.0051 25.8 5.6 51 57-109 91-142 (210)
366 TIGR01692 HIBADH 3-hydroxyisob 20.5 6.4E+02 0.014 23.8 8.8 90 4-105 11-110 (288)
367 TIGR01753 flav_short flavodoxi 20.4 1.8E+02 0.0039 23.7 4.5 20 244-264 2-21 (140)
368 cd04908 ACT_Bt0572_1 N-termina 20.4 1.3E+02 0.0028 21.9 3.2 47 28-81 17-64 (66)
369 TIGR02667 moaB_proteo molybden 20.4 1.1E+02 0.0025 27.0 3.4 73 244-327 9-88 (163)
370 PRK06242 flavodoxin; Provision 20.4 2.9E+02 0.0062 23.1 5.8 31 243-273 3-34 (150)
371 cd01408 SIRT1 SIRT1: Eukaryoti 20.2 2.1E+02 0.0046 26.8 5.3 56 214-273 152-208 (235)
372 PRK05928 hemD uroporphyrinogen 20.2 2.6E+02 0.0056 25.0 5.8 64 14-82 81-152 (249)
373 COG2388 Predicted acetyltransf 20.2 86 0.0019 26.1 2.4 31 57-88 38-81 (99)
374 cd03020 DsbA_DsbC_DsbG DsbA fa 20.2 1.1E+02 0.0024 27.3 3.3 30 79-109 82-111 (197)
375 COG0124 HisS Histidyl-tRNA syn 20.2 4.8E+02 0.01 27.2 8.3 102 11-134 301-408 (429)
376 cd06380 PBP1_iGluR_AMPA N-term 20.2 1.1E+02 0.0025 29.6 3.6 45 223-270 46-90 (382)
377 cd06293 PBP1_LacI_like_11 Liga 20.1 6.3E+02 0.014 22.6 12.5 81 228-314 42-126 (269)
378 cd08172 GlyDH-like1 Glycerol d 20.0 2.9E+02 0.0063 27.1 6.5 85 177-275 24-109 (347)
No 1
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=100.00 E-value=4.8e-104 Score=787.86 Aligned_cols=338 Identities=85% Similarity=1.296 Sum_probs=324.3
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++||++++++|+++||+||||||||+|+++|+++||+++++.++.++++++++|++|||||||+||++++.|+++|+.
T Consensus 123 AV~~A~ea~~~~p~~~Iy~lgeIIHNp~Vv~~L~~~GV~~I~~~~~~~~~~~v~~gdvVIirAHGvs~~~~~~l~~kg~~ 202 (460)
T PLN02821 123 AVQIAYEARKQFPDEKLWITNEIIHNPTVNKRLEEMNVQFIEVEEGGKDFSVVGEGDVVILPAFGASVEEMQTLNDKNVQ 202 (460)
T ss_pred HHHHHHHHHhhCCCCCeEEecCCccCHHHHHHHHHCCCEEecccccccccccCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 47899999888877899999999999999999999999999876666779999889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE 160 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (339)
|||||||||+|+|+.|+++.++||++||+|+++||||+|+.||+++++||.+++|++++|+||.+|.+|||+++++.|++
T Consensus 203 IVDaTCP~V~KV~~~v~k~~k~gy~iII~Gk~~HpEv~gt~s~a~~~~VV~~~~ea~~v~~yi~~~~~~~~~~~~~~f~~ 282 (460)
T PLN02821 203 IVDTTCPWVSKVWNTVEKHKKKDYTSVIHGKYAHEETVATASFAGKYIIVKNMKEATYVCDYILGGQLDGSSGTKEEFLE 282 (460)
T ss_pred EEecCCcchHHHHHHHHHHHhCCCEEEEECCCCCcceeecccccCCeEEECCHHHHHHHhhhcccccccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhC
Q 019556 161 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEK 240 (339)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~ 240 (339)
+|+++++++|||+.+++++++++||||+.++|++|++.|+++|++++++.+.+.||.+|||||+||++||+|+++|+.++
T Consensus 283 ~f~~a~s~~fdpd~~l~kvgvvnQTTm~~~et~~I~~~l~~~~~~k~gp~~~~~~~~vfnTIC~ATqeRQdA~~~L~~~~ 362 (460)
T PLN02821 283 KFKNAVSKGFDPDTDLVKVGIANQTTMLKGETEEIGKLLEKTMMQKYGVENVNDHFMSFNTICDATQERQDAMYKLVEEK 362 (460)
T ss_pred hhcccccccCCcccccccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCcccCccccccCCcchhHHHHHHHHHHHhhcC
Confidence 99999999999877789999999999999999999999999999999998788999999999999999999999996468
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
+|+||||||+|||||+||+|||++.|+|+||||+++||++.+.++|++.|+|..++.+||+.+..+||||||||||+|+|
T Consensus 363 vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~~~i~h~~~~~e~~~~~~wl~~~~~~VGITAGASTPd~lI 442 (460)
T PLN02821 363 LDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPGNTIAHKLNHGELVEKENWLPEGPVTIGVTSGASTPDKVV 442 (460)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcccccccccccchhhhhHHHhccCCCEEEEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976789999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhc
Q 019556 321 EDVLKKVFEIKREEALQL 338 (339)
Q Consensus 321 ~eVi~~l~~~~~~~~~~~ 338 (339)
++|+++|.++...+++|+
T Consensus 443 eeVi~~l~~~~~~~~~~~ 460 (460)
T PLN02821 443 EDVLDKVFDIKREEALQL 460 (460)
T ss_pred HHHHHHHHHhhccccccC
Confidence 999999999988888875
No 2
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=3.8e-97 Score=729.15 Aligned_cols=326 Identities=68% Similarity=1.102 Sum_probs=301.8
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|+++++++++++||+||||||||+|+++|+++||+++++.++.++++++++|++|||||||+||+++++|+++|++
T Consensus 55 AI~~a~~~~~~~~~~~vytlG~IIHNp~Vv~~L~~~Gv~~v~~~~~~~~~~~v~~~~~VIIrAHGv~~~v~~~~~~rgl~ 134 (387)
T PRK13371 55 AVAMAYETRRHFPDERIWITNEIIHNPSVNQHLREMGVRFIPVEKGVKDFSVVTPGDVVILPAFGATVQEMQLLNEKGCH 134 (387)
T ss_pred HHHHHHHHHhhcCCCCeEEecCCcCCHHHHHHHHhCCCEEEcCcCcccchhcCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 47888888776667799999999999999999999999999865445568899889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLE 160 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (339)
|||||||+|+|+|++|++|+++||+|||+|+++||||+|+.||+++++||++++|++++++++.++ +++..|++
T Consensus 135 iiDATCP~V~kvh~~v~~~~~~Gy~iIIiG~~~HpEV~Gi~g~a~~~~VV~~~~e~~~l~~~~~~~------~~~~~~~~ 208 (387)
T PRK13371 135 IVDTTCPWVSKVWNTVEKHKKKDFTSIIHGKYKHEETRATSSFAGTYLVVLDLEEAQYVADYILGG------GDREEFLE 208 (387)
T ss_pred EEecCCccchHHHHHHHHHHhCCCEEEEEcCCCCcceeeeccccCceEEECCHHHHHHHhhhhccc------cchhhhhh
Confidence 999999999999999999999999999999999999999999997789999999999998887776 57788999
Q ss_pred HHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhC
Q 019556 161 KFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEK 240 (339)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~ 240 (339)
+|..+.++++++.++.+++++|+||||+.++|.+|++.|+++|++++++.+.+.+++++||||+||++||+|+++||.++
T Consensus 209 ~f~~~~s~~~~~~~~~~kv~vvsQTT~~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~ 288 (387)
T PRK13371 209 RFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEP 288 (387)
T ss_pred hhhhcccccCCccCCCccEEEEECCCCcHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcC
Confidence 99999999998866678999999999999999999999999999999876667789999999999999999999997447
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
+|+||||||+|||||+||++||++.|++|||||+++||++++.|.|+....+..+.++||+.+..+||||||||||+|+|
T Consensus 289 vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI 368 (387)
T PRK13371 289 LDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVV 368 (387)
T ss_pred CCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHH
Confidence 99999999999999999999999999999999999999998889999777888999999955688999999999999999
Q ss_pred HHHHHHHHhhhh
Q 019556 321 EDVLKKVFEIKR 332 (339)
Q Consensus 321 ~eVi~~l~~~~~ 332 (339)
++|+++|+++++
T Consensus 369 ~eVi~~l~~l~~ 380 (387)
T PRK13371 369 EDVIEKIFALKE 380 (387)
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 3
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=100.00 E-value=1.4e-91 Score=668.15 Aligned_cols=262 Identities=39% Similarity=0.602 Sum_probs=240.7
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCC-EEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCC
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAV-QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV 79 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv-~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~ 79 (339)
+|++|++++++. +++||+||||||||+|+++|+++|| .+++ +++++++|++|||||||+||+++++|+++|+
T Consensus 17 Ai~~a~~~~~~~-~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~------~~~~v~~~~~ViirAHGv~~~~~~~~~~~gl 89 (280)
T TIGR00216 17 AIQMAEEALKES-GKPVYTLGPIVHNPQVVERLRERGVFFFLE------DLDEVAAGDTVIIRAHGVPPEVREELEKKGL 89 (280)
T ss_pred HHHHHHHHHhhc-CCCeEEecCCccCHHHHHHHHHCCCEEeec------CcccCCCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence 467888877543 5789999999999999999999997 7776 4788888999999999999999999999999
Q ss_pred cEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHHHHHhhhhhcCCCCCCCCChHHHH
Q 019556 80 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 158 (339)
Q Consensus 80 ~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 158 (339)
.|||||||||+|+|++|++|+++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 90 ~viDaTCP~V~kv~~~v~~~~~~Gy~iiiiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~------------------ 151 (280)
T TIGR00216 90 EVIDATCPLVTKVHNAVKKYAKEGYHVILIGKKNHPEVIGTRGYAPDKAIVVETLEDLENFK------------------ 151 (280)
T ss_pred eEEeCCCcccHHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEECCHHHHHhCC------------------
Confidence 9999999999999999999999999999999999999999999996 578999999987651
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhh
Q 019556 159 LEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE 238 (339)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~ 238 (339)
..+++++++||||+.++|++|++.|+++||.. +++++||||+||++||+|+++||
T Consensus 152 ----------------~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~--------~~~~~nTIC~AT~~RQ~a~~~la- 206 (280)
T TIGR00216 152 ----------------VEDLLGVVSQTTLSQEDTKEIVAELKARVPQK--------EVPVFNTICYATQNRQDAVKELA- 206 (280)
T ss_pred ----------------CCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCc--------CCCCCCCcccccHHHHHHHHHHH-
Confidence 12589999999999999999999999865433 35689999999999999999998
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHH
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
+++|+||||||+|||||+||++||++.|+++||||+++||++ +|| +++++||||||||||+|
T Consensus 207 ~~vD~miVVGg~nSsNT~rL~ei~~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGiTAGASTP~~ 268 (280)
T TIGR00216 207 PEVDLMIVIGGKNSSNTTRLYEIAEEHGPPSYLIETAEELPE-----------------EWL-KGVKVVGITAGASTPDW 268 (280)
T ss_pred hhCCEEEEECCCCCchHHHHHHHHHHhCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEecCCCCHH
Confidence 799999999999999999999999999999999999999999 999 78999999999999999
Q ss_pred HHHHHHHHHHhh
Q 019556 319 AVEDVLKKVFEI 330 (339)
Q Consensus 319 lI~eVi~~l~~~ 330 (339)
+|++|+++|+++
T Consensus 269 li~eVi~~l~~~ 280 (280)
T TIGR00216 269 IIEEVIRKIKEL 280 (280)
T ss_pred HHHHHHHHHHhC
Confidence 999999999753
No 4
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.8e-91 Score=667.61 Aligned_cols=263 Identities=32% Similarity=0.511 Sum_probs=242.5
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|++++..+++++||+||||||||+|+++|+++||++++. ++++++++|++|||||||+||+++++|+++|++
T Consensus 18 Ai~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~----~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~ 93 (281)
T PRK12360 18 AIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLEEKGVKTIEE----SEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLE 93 (281)
T ss_pred HHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHHHCcCEEECc----CchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 4678888766565679999999999999999999999999932 147888889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 159 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 159 (339)
|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 94 viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~------------------- 154 (281)
T PRK12360 94 IIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP------------------- 154 (281)
T ss_pred EEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc-------------------
Confidence 999999999999999999999999999999999999999999996 578999999997751
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhh
Q 019556 160 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE 239 (339)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~ 239 (339)
..+++++++||||+.++|++|++.|+++| .+++++||||+||++||+|+++|| +
T Consensus 155 ---------------~~~kv~~vsQTT~~~~~~~~iv~~l~~~~----------~~~~v~~TIC~aT~~RQ~a~~~La-~ 208 (281)
T PRK12360 155 ---------------FLDKACVVAQTTIIPELWEDILNVIKLKS----------KELVFFNTICSATKKRQESAKELS-K 208 (281)
T ss_pred ---------------cccCEEEEECCCCcHHHHHHHHHHHHHhC----------cccccCCCcchhhhhHHHHHHHHH-H
Confidence 12689999999999999999999998743 356789999999999999999998 7
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHH
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 319 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 319 (339)
++|+||||||+|||||+||+++|++.|+++||||+++||++ +|| .++.+||||||||||+|+
T Consensus 209 ~vD~miVVGg~~SsNT~rL~eia~~~~~~t~~Ie~~~el~~-----------------~~~-~~~~~VGitaGASTP~~l 270 (281)
T PRK12360 209 EVDVMIVIGGKHSSNTQKLVKICEKNCPNTFHIETADELDL-----------------EML-KDYKIIGITAGASTPDWI 270 (281)
T ss_pred hCCEEEEecCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEccCCCCHHH
Confidence 99999999999999999999999999999999999999999 999 789999999999999999
Q ss_pred HHHHHHHHHhh
Q 019556 320 VEDVLKKVFEI 330 (339)
Q Consensus 320 I~eVi~~l~~~ 330 (339)
|++|+++|+++
T Consensus 271 i~eV~~~l~~~ 281 (281)
T PRK12360 271 IEEVIKKIKNL 281 (281)
T ss_pred HHHHHHHHHhC
Confidence 99999999763
No 5
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=100.00 E-value=5.6e-92 Score=671.53 Aligned_cols=264 Identities=38% Similarity=0.580 Sum_probs=218.0
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|++++++++ ++||+||||||||+|+++|+++||.++++ ++++++|++|||||||+||+++++|+++|++
T Consensus 16 Ai~~a~~~~~~~~-~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~------~~~~~~g~~ViirAHGv~~~~~~~l~~~g~~ 88 (281)
T PF02401_consen 16 AIEIAEEALEEYP-GPVYTLGPIIHNPQVVERLEKRGVKVVDD------IDEVPEGDTVIIRAHGVPPEVYEELKERGLE 88 (281)
T ss_dssp HHHHHHHHCCCHS-S-EEECS-SSS-HHHHHHHHHCTEEEESS------GCGS-TTEEEEE-TT---HHHHHHHHHTTEE
T ss_pred HHHHHHHHHHhcC-CCEEEecCcccCHHHHHHHHHCCCEEecC------ccccCCCCEEEEeCCCCCHHHHHHHHHcCCE
Confidence 4788888887654 48999999999999999999999999985 5888899999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC--cEEEEcChHHHHHhhhhhcCCCCCCCCChHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG--KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 158 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~--~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 158 (339)
|||||||||+|+|+.|++++++||+|||+|+++||||+|++||++ ++++|++.+|++.+.
T Consensus 89 viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~~vv~~~~~~~~l~------------------ 150 (281)
T PF02401_consen 89 VIDATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGILGYAPEEKAIVVESPEDVEKLP------------------ 150 (281)
T ss_dssp EEE---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHHCCHHTS-EEEESSHHHHHHGG------------------
T ss_pred EEECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEecccccCCceEEeCChhhhcccC------------------
Confidence 999999999999999999999999999999999999999999997 679999999987762
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhh
Q 019556 159 LEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE 238 (339)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~ 238 (339)
..+++++++||||||+.++|++|+++|+++|+... +.++||||+||++||+|+++||
T Consensus 151 --------------~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~--------~~~~nTIC~aT~~RQ~a~~~La- 207 (281)
T PF02401_consen 151 --------------ISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELE--------GPVFNTICYATQNRQEAARELA- 207 (281)
T ss_dssp --------------GSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE---------SCC-S--CHHHHHHHHHHHHH-
T ss_pred --------------CCCCCeEEEEEeecccHHHHHHHHHHHHHhCcccc--------CCCCCCCCHhHHHHHHHHHHHH-
Confidence 11346999999999999999999999998655432 2389999999999999999998
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHH
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
++||+||||||+|||||+||||+|++.|+++||||+++||++ +|| +++++||||||||||+|
T Consensus 208 ~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGItaGASTP~~ 269 (281)
T PF02401_consen 208 KEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDP-----------------EWL-KGVKKVGITAGASTPDW 269 (281)
T ss_dssp CCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--H-----------------HHH-TT-SEEEEEE-TTS-HH
T ss_pred hhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCH-----------------hHh-CCCCEEEEEccCCCCHH
Confidence 899999999999999999999999999999999999999999 999 78999999999999999
Q ss_pred HHHHHHHHHHhh
Q 019556 319 AVEDVLKKVFEI 330 (339)
Q Consensus 319 lI~eVi~~l~~~ 330 (339)
+|++|+++|+++
T Consensus 270 ii~eVi~~l~~~ 281 (281)
T PF02401_consen 270 IIEEVIDRLEEI 281 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 6
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=100.00 E-value=1.8e-90 Score=665.39 Aligned_cols=264 Identities=31% Similarity=0.501 Sum_probs=242.8
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|++++.++ +++|||||||||||+|+++|+++||+++++ ++++++|++|||||||+||+++++|+++|+.
T Consensus 18 Ai~~a~~~~~~~-~~~iytlG~iIHN~~vv~~L~~~GV~~v~~------~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~ 90 (298)
T PRK01045 18 AIEIVERALEKY-GAPIYVRHEIVHNRYVVERLEKKGAIFVEE------LDEVPDGAIVIFSAHGVSPAVREEAKERGLT 90 (298)
T ss_pred HHHHHHHHHHhc-CCCeEEEecCccCHHHHHHHHHCCCEEecC------cccCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 467888876544 468999999999999999999999999984 6788889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 159 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 159 (339)
|||||||||+|+|+.|++++++||+|||+|+++||||+|+.||++ .++||++++|++.|.
T Consensus 91 viDaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~g~~~~~~~vv~~~~e~~~l~------------------- 151 (298)
T PRK01045 91 VIDATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTMGQAPGGVYLVESPEDVAKLE------------------- 151 (298)
T ss_pred EEeCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccCcCCCEEEEcCHHHHhhcc-------------------
Confidence 999999999999999999999999999999999999999999996 578999999987761
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccc--cccccHHHHHHHHHHHHhh
Q 019556 160 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS--FNTICDATQERQDAMYKMV 237 (339)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~nTIC~AT~~RQ~a~~~la 237 (339)
.++.++++++|||||+.++|++|+++|+++|+ ++++ +||||+||++||+|+++||
T Consensus 152 -------------~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~----------~~~v~~~nTIC~aT~~RQ~a~~~La 208 (298)
T PRK01045 152 -------------VKDPDKLALVTQTTLSVDDTAEIIAALKERFP----------EIQGPPKDDICYATQNRQEAVKELA 208 (298)
T ss_pred -------------cCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCc----------CcccCCCCCcchhhHHHHHHHHHHH
Confidence 01246899999999999999999999988543 3445 9999999999999999998
Q ss_pred hhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcH
Q 019556 238 EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPD 317 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~ 317 (339)
+++|+||||||+|||||+||+++|++.|+++||||+++||++ +|| +++++||||||||||+
T Consensus 209 -~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~-----------------~~l-~~~~~VGitaGASTP~ 269 (298)
T PRK01045 209 -PQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDP-----------------EWF-KGVKTVGVTAGASAPE 269 (298)
T ss_pred -hhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcH-----------------HHh-cCCCEEEEEecCCCCH
Confidence 799999999999999999999999999999999999999999 999 7899999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 019556 318 KAVEDVLKKVFEIKR 332 (339)
Q Consensus 318 ~lI~eVi~~l~~~~~ 332 (339)
|+|++|+++|+++.+
T Consensus 270 ~li~eV~~~l~~~~~ 284 (298)
T PRK01045 270 WLVQEVIARLKELGA 284 (298)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999998843
No 7
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=100.00 E-value=6.4e-90 Score=651.89 Aligned_cols=265 Identities=34% Similarity=0.534 Sum_probs=246.6
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|+++++++ ++|||++||||||++|+++|+++|+.|+++ ++++|+|++||||||||||++++.|++||++
T Consensus 19 AI~ive~al~~~-g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~------l~e~p~~~~VIfsAHGVs~~v~~~a~~r~l~ 91 (294)
T COG0761 19 AIQIVERALEEY-GAPIYVRHEIVHNRYVVDRLREKGAIFVEE------LDEVPDGATVIFSAHGVSPAVREEAKERGLK 91 (294)
T ss_pred HHHHHHHHHHHc-CCCeEEEeccccCHHHHHHHHHcCCEeccc------cccCCCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 478899999988 568999999999999999999999999984 6889999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecc-ccCc-EEEEcChHHHHHhhhhhcCCCCCCCCChHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATAS-FAGK-YIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 158 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g-~~~~-~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 158 (339)
++|||||||+|+|+.|++|+++||++|+||+++||||+|++| |+++ .+++++++|+..+.
T Consensus 92 v~DATCPlVtKvh~~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~------------------ 153 (294)
T COG0761 92 VIDATCPLVTKVHKEVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLK------------------ 153 (294)
T ss_pred EEecCCCcchHHHHHHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcc------------------
Confidence 999999999999999999999999999999999999999999 5543 79999999998762
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhh
Q 019556 159 LEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVE 238 (339)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~ 238 (339)
. ...+++++++|||+|.++|.+|+++|+.+||+.. +.++|||||||++||+|+++||
T Consensus 154 -----------~---~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p~~~--------~~~~~~ICyAT~nRQ~Avk~la- 210 (294)
T COG0761 154 -----------V---QLPDKLAFVTQTTLSVDDTAEIVAALKERFPKIE--------VPPFNDICYATQNRQDAVKELA- 210 (294)
T ss_pred -----------c---CCcccEEEEeeeecCHHHHHHHHHHHHHhCcccc--------CCcccccchhhhhHHHHHHHHh-
Confidence 0 0124899999999999999999999999887654 4579999999999999999998
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHH
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
.+||+||||||+|||||+||+|||++.|.++|+|++++||++ +|| .+.++||||||||||+|
T Consensus 211 ~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~-----------------~w~-~~~~~VGvTAGAStPd~ 272 (294)
T COG0761 211 PEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP-----------------EWL-KGVKTVGVTAGASTPDW 272 (294)
T ss_pred hcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-----------------HHh-cCccEEEEecCCCCCHH
Confidence 799999999999999999999999999999999999999999 999 68999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 019556 319 AVEDVLKKVFEIK 331 (339)
Q Consensus 319 lI~eVi~~l~~~~ 331 (339)
||++|+.+|+++.
T Consensus 273 lV~~Vi~~l~~~~ 285 (294)
T COG0761 273 LVQEVIAKLRELG 285 (294)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999986
No 8
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=5.2e-83 Score=668.30 Aligned_cols=261 Identities=33% Similarity=0.513 Sum_probs=242.4
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|++++.++ +++|||||||||||+|+++|+++||+++++ ++++++|++|||||||+||+++++|+++|+.
T Consensus 18 Ai~~~~~~~~~~-~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~------~~~~~~~~~vii~aHG~~~~~~~~~~~~~~~ 90 (647)
T PRK00087 18 AVDTAIKTAEEL-KGKIYTLGPLIHNNQVVEKLKKKGIKPIED------IDELNEGDTIIIRSHGVPPEVLEELKDKGLK 90 (647)
T ss_pred HHHHHHHHHHhc-CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC------HhhCCCCCEEEEeCCCCCHHHHHHHHHCCCe
Confidence 467888876655 478999999999999999999999999974 6888889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 159 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 159 (339)
|||||||+|+|+|+.|++|+++||+|||+|+++||||+|+.||++ .++||++++|++.+.
T Consensus 91 viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~g~~~~~~~vv~~~~~~~~~~------------------- 151 (647)
T PRK00087 91 VIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGINGWCNNSAIIVEDGEEAEKLP------------------- 151 (647)
T ss_pred EEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeeccccCCCEEEECCHHHHhhCC-------------------
Confidence 999999999999999999999999999999999999999999996 578999999987651
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhh
Q 019556 160 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE 239 (339)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~ 239 (339)
..+++++++||||+.++|.+|++.|+++| .+++++||||+||++||+|+++|| +
T Consensus 152 ---------------~~~~~~~~~QTT~~~~~~~~~~~~l~~~~----------~~~~~~~tiC~at~~Rq~a~~~la-~ 205 (647)
T PRK00087 152 ---------------FDKKICVVSQTTEKQENFEKVLKELKKKG----------KEVKVFNTICNATEVRQEAAEKLA-K 205 (647)
T ss_pred ---------------CCCCEEEEEcCCCcHHHHHHHHHHHHHhC----------CCcccCCCcchhhhhHHHHHHHHH-h
Confidence 12589999999999999999999998743 357789999999999999999998 7
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHH
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 319 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 319 (339)
++|+||||||+|||||+||+++|++.|++|||||+++||++ +|| .++.+||||||||||+|+
T Consensus 206 ~~d~~~vvGg~~SsNt~~L~~i~~~~~~~~~~ie~~~el~~-----------------~~~-~~~~~vgitagaStP~~~ 267 (647)
T PRK00087 206 KVDVMIVVGGKNSSNTTKLYEICKSNCTNTIHIENAGELPE-----------------EWF-KGVKIIGVTAGASTPDWI 267 (647)
T ss_pred hCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCCH-----------------HHh-CCCCEEEEEeccCCCHHH
Confidence 99999999999999999999999999999999999999999 999 789999999999999999
Q ss_pred HHHHHHHHHhhh
Q 019556 320 VEDVLKKVFEIK 331 (339)
Q Consensus 320 I~eVi~~l~~~~ 331 (339)
|++|+++|+++.
T Consensus 268 i~~v~~~l~~~~ 279 (647)
T PRK00087 268 IEEVIKKMSELD 279 (647)
T ss_pred HHHHHHHHHHhc
Confidence 999999999873
No 9
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=95.85 E-value=0.08 Score=51.55 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=101.1
Q ss_pred CCceEEecccccCHHHHHHHH--H-cCCEEecCCccccccccccCCCEEEECCCCCCH----HHHHHHHhcCCcEE----
Q 019556 14 EEKIWITNEIIHNPTVNKRLE--E-MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV----EEMVTLNNKNVQIV---- 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~--~-~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~----~~~~~l~~~g~~ii---- 82 (339)
+-.|.+.|+-=| |.|..-+- . ....++++.++.+.+..-......++.=--.+. ++.+.|+++.-.+.
T Consensus 111 Gy~iviiG~~~H-pEv~gi~g~~~~~~~~vv~~~~~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~ 189 (281)
T PF02401_consen 111 GYQIVIIGDKNH-PEVIGILGYAPEEKAIVVESPEDVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVF 189 (281)
T ss_dssp T-EEEEES-TT--HHHHHHHCCHHTS-EEEESSHHHHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC
T ss_pred CCEEEEECCCCC-ceEEEecccccCCceEEeCChhhhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCC
Confidence 447999999666 55554443 1 245666654332222211123466777667776 46677888887776
Q ss_pred eCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHH
Q 019556 83 DTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAF 158 (339)
Q Consensus 83 DaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 158 (339)
|+-|+--..=|..+++++++-.-+|++|.++-.-+.-+...| .+++.|++++|+..-
T Consensus 190 nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT~kL~eia~~~~~~t~~Ie~~~el~~~------------------- 250 (281)
T PF02401_consen 190 NTICYATQNRQEAARELAKEVDAMIVIGGKNSSNTRKLAEIAKEHGKPTYHIETADELDPE------------------- 250 (281)
T ss_dssp -S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHHHHHHHHHHHCTTCEEEESSGGG--HH-------------------
T ss_pred CCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccHHHHHHHHHHhCCCEEEeCCccccCHh-------------------
Confidence 999999999999999999999999999999988888777554 368999999988531
Q ss_pred HHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 159 LEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
.|+ ..++||+.+=+.-+....++++++|++
T Consensus 251 --~l~-----------~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 251 --WLK-----------GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp --HHT-----------T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred --HhC-----------CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 111 235999999999999999999998874
No 10
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=92.10 E-value=1.5 Score=42.77 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=115.2
Q ss_pred CCcchHHHHHHHHHHhc-CCCeEEEEecCCC-ceeeeeccccCc-EEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHHH
Q 019556 85 TCPWVSKVWTSVEKHKK-GDYTSIIHGKYSH-EETVATASFAGK-YIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 161 (339)
Q Consensus 85 TCP~V~kv~~~~~~~~~-~Gy~iIIiG~~~H-pEv~gi~g~~~~-~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (339)
-|.=|++.-+.+.+..+ .|-.|..+|.==| |.|..-+.- .. ..++++.+++
T Consensus 10 FC~GV~rAi~~a~~~~~~~~~~iy~lG~iIHN~~Vv~~L~~-~Gv~~~v~~~~~v------------------------- 63 (280)
T TIGR00216 10 FCFGVKRAIQMAEEALKESGKPVYTLGPIVHNPQVVERLRE-RGVFFFLEDLDEV------------------------- 63 (280)
T ss_pred CCccHHHHHHHHHHHHhhcCCCeEEecCCccCHHHHHHHHH-CCCEEeecCcccC-------------------------
Confidence 48889999999988654 4778888887544 222211100 01 1223333222
Q ss_pred HHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCC
Q 019556 162 FKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKV 241 (339)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~v 241 (339)
+ + ....++.==-.+.+.++ .+++ ..+.+.|+-|.--..=|..+++++ ++-
T Consensus 64 ----------~--~-~~~ViirAHGv~~~~~~----~~~~------------~gl~viDaTCP~V~kv~~~v~~~~-~~G 113 (280)
T TIGR00216 64 ----------A--A-GDTVIIRAHGVPPEVRE----ELEK------------KGLEVIDATCPLVTKVHNAVKKYA-KEG 113 (280)
T ss_pred ----------C--C-CCEEEEeCCCCCHHHHH----HHHH------------CCCeEEeCCCcccHHHHHHHHHHH-hCC
Confidence 1 0 23445554445544433 3443 125678999999999999999997 788
Q ss_pred cEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHHH
Q 019556 242 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 242 D~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~ 321 (339)
.-+|++|.++=.-+.-+.-.|. -.++.|++.+|++. | ...+++++.+=+.-+.+-.+
T Consensus 114 y~iiiiG~~~HpEv~gi~g~~~---~~~~vv~~~~d~~~-------------------l-~~~~~v~vvsQTT~~~~~~~ 170 (280)
T TIGR00216 114 YHVILIGKKNHPEVIGTRGYAP---DKAIVVETLEDLEN-------------------F-KVEDLLGVVSQTTLSQEDTK 170 (280)
T ss_pred CEEEEEeCCCCCeeeeeccCcC---CCEEEECCHHHHHh-------------------C-CCCCcEEEEEcCCCcHHHHH
Confidence 9999999999888887766552 34789999999876 2 23467999999999999999
Q ss_pred HHHHHHHhhh
Q 019556 322 DVLKKVFEIK 331 (339)
Q Consensus 322 eVi~~l~~~~ 331 (339)
+++++|.+.+
T Consensus 171 ~i~~~l~~~~ 180 (280)
T TIGR00216 171 EIVAELKARV 180 (280)
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 11
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=92.04 E-value=1.4 Score=43.37 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=103.1
Q ss_pred CceEEecccccCHHHHHHHHHc--CCEEecCCccccccccccC-CCEEEECCCCCCHH----HHHHHHhcC--CcE--Ee
Q 019556 15 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE----EMVTLNNKN--VQI--VD 83 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~--Gv~~v~~~~~~~~~~~~~~-g~~VIIrAHGv~~~----~~~~l~~~g--~~i--iD 83 (339)
-.|.++|+==| |.|..-+--- ...++.+.++.+.+.. +. ....++.=--.+.+ +.+.|+++. +.+ .|
T Consensus 114 y~vvi~G~~~H-pEv~gi~g~~~~~~~vv~~~~e~~~l~~-~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~n 191 (298)
T PRK01045 114 YEIILIGHKGH-PEVEGTMGQAPGGVYLVESPEDVAKLEV-KDPDKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKD 191 (298)
T ss_pred CEEEEEeCCCC-CeeeeeccCcCCCEEEEcCHHHHhhccc-CCCCcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCC
Confidence 35777777555 3333222211 1334443322222210 11 23445555555555 455565554 777 99
Q ss_pred CCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHH
Q 019556 84 TTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFL 159 (339)
Q Consensus 84 aTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 159 (339)
+-|.-...=|+.+++++++=..+|++|.++-.-+.=+...| .+++.|++.+|++.- .
T Consensus 192 TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~~~t~~Ie~~~el~~~------------------~- 252 (298)
T PRK01045 192 DICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAGAPAYLIDDASEIDPE------------------W- 252 (298)
T ss_pred CcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHCCCEEEECChHHCcHH------------------H-
Confidence 99999999999999999999999999999988888776544 368899999988521 1
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 160 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
| ...++||+.+=+.-+....++++..|+.
T Consensus 253 --l-----------~~~~~VGitaGASTP~~li~eV~~~l~~ 281 (298)
T PRK01045 253 --F-----------KGVKTVGVTAGASAPEWLVQEVIARLKE 281 (298)
T ss_pred --h-----------cCCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 1 1236899999999999999999999876
No 12
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=90.28 E-value=2.3 Score=41.51 Aligned_cols=167 Identities=12% Similarity=0.106 Sum_probs=113.9
Q ss_pred CCcchHHHHHHHHHHhc--CCCeEEEEecCCC-ceeeeeccccCcEEEE--cChHHHHHhhhhhcCCCCCCCCChHHHHH
Q 019556 85 TCPWVSKVWTSVEKHKK--GDYTSIIHGKYSH-EETVATASFAGKYIIV--KNMKEAEYVCDYILGGELNGSSSTKEAFL 159 (339)
Q Consensus 85 TCP~V~kv~~~~~~~~~--~Gy~iIIiG~~~H-pEv~gi~g~~~~~~vv--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 159 (339)
-|.=|++.-+.+.+..+ .|-.|..+|.==| |.|..-+- .....++ ++.+++
T Consensus 11 FC~GV~rAi~~a~~~~~~~~~~~vy~lG~iVHN~~Vv~~L~-~~Gv~~v~~~~~~~v----------------------- 66 (281)
T PRK12360 11 FCFGVKRAIDTAYDEIEKNDGKKIYTLGPLIHNNQVVSDLE-EKGVKTIEESEIDSL----------------------- 66 (281)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCeEEecCCcCCHHHHHHHH-HCcCEEECcCchhhC-----------------------
Confidence 48888988888887543 2778899987554 33322110 0112334 322221
Q ss_pred HHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhh
Q 019556 160 EKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE 239 (339)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~ 239 (339)
+ + ....++.==-.+.+.++ .+++ ..+.+.|+-|.--..=|..+++++ +
T Consensus 67 ------------~--~-~~~ViirAHGv~~~~~~----~~~~------------~g~~viDaTCP~V~k~~~~v~~~~-~ 114 (281)
T PRK12360 67 ------------K--E-GDVVIIRSHGVSKKVYK----DLKD------------KGLEIIDATCPFVKKIQNIVEEYY-N 114 (281)
T ss_pred ------------C--C-CCEEEEeCCCCCHHHHH----HHHH------------CCCeEEeCCCccchHHHHHHHHHH-h
Confidence 1 0 13445554445544433 3333 125678999999999999999997 7
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHH
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 319 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 319 (339)
+-.-+|++|.++=.-+.-+.-.| .-+++.|++.+|++. | ...+++++++=+.-+...
T Consensus 115 ~Gy~iviiG~~~HpEv~gi~g~~---~~~~~vv~~~~d~~~-------------------l-~~~~kv~~vsQTT~~~~~ 171 (281)
T PRK12360 115 KGYSIIIVGDKNHPEVIGINGWC---DNSAYIVNSIEEVEN-------------------I-PFLDKACVVAQTTIIPEL 171 (281)
T ss_pred CCCEEEEEcCCCCceeeEeccCc---CCCeEEECCHHHHhh-------------------C-ccccCEEEEECCCCcHHH
Confidence 88899999999988888776655 234789999999876 2 123789999999999999
Q ss_pred HHHHHHHHHhh
Q 019556 320 VEDVLKKVFEI 330 (339)
Q Consensus 320 I~eVi~~l~~~ 330 (339)
.++++++|+.-
T Consensus 172 ~~~iv~~l~~~ 182 (281)
T PRK12360 172 WEDILNVIKLK 182 (281)
T ss_pred HHHHHHHHHHh
Confidence 99999999863
No 13
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=89.32 E-value=3.1 Score=36.73 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=57.7
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
+++++.+.+ ...-+..+..-+++...+ .+ .++.+.++-... ...++.++++.+..+|++|+.+...++- .
T Consensus 1 ~ig~v~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~-~- 70 (264)
T cd01537 1 TIGVLVPDL-DNPFFAQVLKGIEEAAKA-AG-----YQVLLANSQNDA-EKQLSALENLIARGVDGIIIAPSDLTAP-T- 70 (264)
T ss_pred CeEEEEcCC-CChHHHHHHHHHHHHHHH-cC-----CeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEecCCCcch-h-
Confidence 367888766 445567777777664333 22 345556555543 3344556666656899998877655543 3
Q ss_pred HHHHHHHhCCCceeeCCCCc
Q 019556 258 LQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~e 277 (339)
+++.+.+.+.|...+.+..+
T Consensus 71 ~~~~l~~~~ip~v~~~~~~~ 90 (264)
T cd01537 71 IVKLARKAGIPVVLVDRDIP 90 (264)
T ss_pred HHHHhhhcCCCEEEeccCCC
Confidence 67888888899988866643
No 14
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=85.97 E-value=5.2 Score=43.12 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=115.2
Q ss_pred CCcchHHHHHHHHHHhcC-CCeEEEEecCCC-ceeee-eccccCcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHHH
Q 019556 85 TCPWVSKVWTSVEKHKKG-DYTSIIHGKYSH-EETVA-TASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEK 161 (339)
Q Consensus 85 TCP~V~kv~~~~~~~~~~-Gy~iIIiG~~~H-pEv~g-i~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (339)
-|.=|++.=+.|.+..++ |-.|.+.|.==| |.|.. +.. ....++++.+++
T Consensus 11 fC~GV~rAi~~~~~~~~~~~~~i~~lg~ivHN~~vv~~l~~--~Gv~~v~~~~~~------------------------- 63 (647)
T PRK00087 11 FCFGVKRAVDTAIKTAEELKGKIYTLGPLIHNNQVVEKLKK--KGIKPIEDIDEL------------------------- 63 (647)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEeCCCcCCHHHHHHHHH--CCCEEeCCHhhC-------------------------
Confidence 488899988899885544 778888887554 22221 111 112344443322
Q ss_pred HHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCC
Q 019556 162 FKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKV 241 (339)
Q Consensus 162 ~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~v 241 (339)
+ + ....+++==-.+.+. .+.+++ ..+.+.|+-|+--..=|..+++++ ++-
T Consensus 64 ----------~--~-~~~vii~aHG~~~~~----~~~~~~------------~~~~viDaTCP~V~k~~~~~~~~~-~~g 113 (647)
T PRK00087 64 ----------N--E-GDTIIIRSHGVPPEV----LEELKD------------KGLKVIDATCPFVKNIQKLAKKYY-EEG 113 (647)
T ss_pred ----------C--C-CCEEEEeCCCCCHHH----HHHHHH------------CCCeEEECCCcCchHHHHHHHHHH-hCC
Confidence 1 0 134455544444443 333443 136678999999999999999997 788
Q ss_pred cEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHHH
Q 019556 242 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 242 D~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~ 321 (339)
.-+|++|.++=.-+.-+.-.| .-+++.|++.+|++. | ...+++++++=+.-+.+..+
T Consensus 114 ~~ivi~G~~~HpEv~g~~g~~---~~~~~vv~~~~~~~~-------------------~-~~~~~~~~~~QTT~~~~~~~ 170 (647)
T PRK00087 114 YQIVIVGDKNHPEVIGINGWC---NNSAIIVEDGEEAEK-------------------L-PFDKKICVVSQTTEKQENFE 170 (647)
T ss_pred CEEEEEeCCCCCeeeeecccc---CCCEEEECCHHHHhh-------------------C-CCCCCEEEEEcCCCcHHHHH
Confidence 999999999988888777665 235899999999876 2 12478999999999999999
Q ss_pred HHHHHHHhh
Q 019556 322 DVLKKVFEI 330 (339)
Q Consensus 322 eVi~~l~~~ 330 (339)
+++++|...
T Consensus 171 ~~~~~l~~~ 179 (647)
T PRK00087 171 KVLKELKKK 179 (647)
T ss_pred HHHHHHHHh
Confidence 999999863
No 15
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=84.32 E-value=4.4 Score=38.71 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred eEEecccccCHHHHHHHHHcCC---EEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcE-EeCCCcchHHH
Q 019556 17 IWITNEIIHNPTVNKRLEEMAV---QNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKV 92 (339)
Q Consensus 17 Vy~lG~lIHN~~Vv~~L~~~Gv---~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv 92 (339)
|+++|==---+.+.+.|.++|. .++.+- +......-..+..|.+-..|=..+..+.++++|+.. ||||=||-..+
T Consensus 3 ILvlgGTtE~r~la~~L~~~g~v~~sv~t~~-g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~i 81 (249)
T PF02571_consen 3 ILVLGGTTEGRKLAERLAEAGYVIVSVATSY-GGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEI 81 (249)
T ss_pred EEEEechHHHHHHHHHHHhcCCEEEEEEhhh-hHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHH
Confidence 3333333344678899999995 444321 111111111234578888877788889999999986 99999999999
Q ss_pred HHHHHHHhcC-CCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHh
Q 019556 93 WTSVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 139 (339)
Q Consensus 93 ~~~~~~~~~~-Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 139 (339)
++.+.+.+++ |...+=+-.+. ..-. -..+.+.|.|.+++...
T Consensus 82 s~na~~a~~~~~ipylR~eRp~---~~~~--~~~~~~~v~~~~eA~~~ 124 (249)
T PF02571_consen 82 SQNAIEACRELGIPYLRFERPS---WQPE--PDDNWHYVDSYEEAAEL 124 (249)
T ss_pred HHHHHHHHhhcCcceEEEEcCC---cccC--CCCeEEEeCCHHHHHHH
Confidence 9999998875 66666555443 1100 01236778888888654
No 16
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=83.35 E-value=11 Score=36.80 Aligned_cols=104 Identities=8% Similarity=0.005 Sum_probs=80.6
Q ss_pred hHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEE-EECCCC-CCHHHHHHHH---hc
Q 019556 3 FIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFG-AAVEEMVTLN---NK 77 (339)
Q Consensus 3 ~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~V-IIrAHG-v~~~~~~~l~---~~ 77 (339)
.++++.++. +..|+.|- +|+.-+++|+..|....++.++ .+..+++..+| +.-.|| +.+++.+.|. ++
T Consensus 14 n~v~rl~~~--ghdvV~yD---~n~~av~~~~~~ga~~a~sl~e--l~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~ 86 (300)
T COG1023 14 NLVRRLLDG--GHDVVGYD---VNQTAVEELKDEGATGAASLDE--LVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA 86 (300)
T ss_pred HHHHHHHhC--CCeEEEEc---CCHHHHHHHHhcCCccccCHHH--HHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC
Confidence 456677653 34677774 8999999999999877765332 23455544444 455566 9999988876 47
Q ss_pred CCcEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 78 NVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 78 g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
|=.|||.--.+-+-.+++.+++.++|...+=+|-++
T Consensus 87 GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG 122 (300)
T COG1023 87 GDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG 122 (300)
T ss_pred CCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence 999999999999999999999999999999999776
No 17
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=80.82 E-value=7.6 Score=37.09 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=74.7
Q ss_pred eEEecccccCHHHHHHHHHcCCEEecCC-ccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcE-EeCCCcchHHHHH
Q 019556 17 IWITNEIIHNPTVNKRLEEMAVQNIPVE-EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWT 94 (339)
Q Consensus 17 Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~-~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~ 94 (339)
|+++|==---+.+.+.|.++|+.++-+. .+...... .+..|..-..|=..+..+.+++.++.+ ||||=||-..+.+
T Consensus 5 IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~~--~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~ 82 (248)
T PRK08057 5 ILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPAD--LPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISA 82 (248)
T ss_pred EEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCccc--CCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHH
Confidence 5555544455778899999999766432 11111111 133455666665677888888888876 9999999999999
Q ss_pred HHHHHhcC-CCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHh
Q 019556 95 SVEKHKKG-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 139 (339)
Q Consensus 95 ~~~~~~~~-Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 139 (339)
.+.+.+++ |...+=+=.+ +.. ..-.+..+.+.+.+++..+
T Consensus 83 ~a~~ac~~~~ipyiR~eR~---~~~--~~~~~~~~~v~s~~~a~~~ 123 (248)
T PRK08057 83 NAAAACRALGIPYLRLERP---SWL--PQPGDRWIEVDDIEEAAEA 123 (248)
T ss_pred HHHHHHHHhCCcEEEEeCC---CcC--CCCCCCEEEECCHHHHHHH
Confidence 99998775 6666666543 210 0001245778888887654
No 18
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=80.10 E-value=12 Score=33.77 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=57.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+|+.-.+-+. -|..+.+-+++...+ .+- .+.+. .-+..+.++| +.++.+.+..+|++| +....++.+..
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~-~g~-----~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Ii-v~~~~~~~~~~ 71 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKE-LGY-----EVEIV-FDAQNDPEEQIEQIEQAISQGVDGII-VSPVDPDSLAP 71 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHH-HTC-----EEEEE-EESTTTHHHHHHHHHHHHHTTESEEE-EESSSTTTTHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHH-cCC-----EEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEE-ecCCCHHHHHH
Confidence 35555555555 677777777764333 221 23332 2345555666 555566567899988 45555566778
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++-|++.|.|.+.+.+.
T Consensus 72 ~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 72 FLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTSEEEEESST
T ss_pred HHHHHhhcCceEEEEecc
Confidence 888899999999999888
No 19
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.25 E-value=6.2 Score=34.49 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=63.8
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHh-------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN------- 76 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~------- 76 (339)
||.+.++. +-+|+.+. .++...++|.+.|++..++. .++-++.-+||.+---++++.+.+..
T Consensus 16 ~a~~L~~~--g~~v~~~d---~~~~~~~~~~~~g~~~~~s~------~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l 84 (163)
T PF03446_consen 16 MARNLAKA--GYEVTVYD---RSPEKAEALAEAGAEVADSP------AEAAEQADVVILCVPDDDAVEAVLFGENILAGL 84 (163)
T ss_dssp HHHHHHHT--TTEEEEEE---SSHHHHHHHHHTTEEEESSH------HHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS
T ss_pred HHHHHHhc--CCeEEeec---cchhhhhhhHHhhhhhhhhh------hhHhhcccceEeecccchhhhhhhhhhHHhhcc
Confidence 56666654 34788775 67899999999999988753 33333323666665555555555443
Q ss_pred -cCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 77 -KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 77 -~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
+|-.+||.|=-.....++.++++.++|...|
T Consensus 85 ~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 85 RPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp -TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred ccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 6889999999999999999999999995444
No 20
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=79.06 E-value=1.7 Score=41.21 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=56.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
++|++++--+-+.+ +...++..++.|... +- ....+=..+.....=...| .++|.+.|=|| ||.
T Consensus 33 ~~i~FIPtAs~~~~-~~~Yv~k~~~~l~~l-g~--------~v~~L~l~~~~~~~Ie~~l--~~~d~IyVgGG----NTF 96 (224)
T COG3340 33 KTIAFIPTASVDSE-DDFYVEKVRNALAKL-GL--------EVSELHLSKPPLAAIENKL--MKADIIYVGGG----NTF 96 (224)
T ss_pred ceEEEEecCccccc-hHHHHHHHHHHHHHc-CC--------eeeeeeccCCCHHHHHHhh--hhccEEEECCc----hHH
Confidence 48888875544433 233444444433322 21 1122223333333333344 36898887775 999
Q ss_pred HHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 314 (339)
.|.+..++.|.... |+ ..|= +|.--||.+|||=
T Consensus 97 ~LL~~lke~gld~i-------------Ir-----------~~vk-~G~~YiG~SAGA~ 129 (224)
T COG3340 97 NLLQELKETGLDDI-------------IR-----------ERVK-AGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHHHHhCcHHH-------------HH-----------HHHH-cCCceEEeccCce
Confidence 99999999984222 11 1454 7889999999983
No 21
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=78.38 E-value=4.9 Score=38.11 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=53.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
++|++++=.+.. ++++..++..++.|.+ .+- ++...++. .+....|. .+|+++|=|| ||.
T Consensus 32 ~~v~fIPtAs~~-~~~~~y~~~~~~af~~-lG~-----~v~~l~~~-------~d~~~~l~--~ad~I~v~GG----nt~ 91 (233)
T PRK05282 32 RKAVFIPYAGVT-QSWDDYTAKVAEALAP-LGI-----EVTGIHRV-------ADPVAAIE--NAEAIFVGGG----NTF 91 (233)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHHH-CCC-----EEEEeccc-------hhhHHHHh--cCCEEEECCc----cHH
Confidence 589998866643 4444544555555444 221 12222211 22344563 6997777665 788
Q ss_pred HHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAST 315 (339)
+|.++-++.+.... |. +.+.+|.-.+|.+|||..
T Consensus 92 ~l~~~l~~~gl~~~-------------l~------------~~~~~G~~~~G~SAGAii 125 (233)
T PRK05282 92 QLLKQLYERGLLAP-------------IR------------EAVKNGTPYIGWSAGANV 125 (233)
T ss_pred HHHHHHHHCCcHHH-------------HH------------HHHHCCCEEEEECHHHHh
Confidence 99988888763211 11 223257778999999853
No 22
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=78.29 E-value=15 Score=31.82 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=55.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
|+++.-.......+..+.+.++..+.+. + ..-++.++++-|.... -.+.+++++...+|++|..+.. .+...+
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~ii~~~~~--~~~~~~ 74 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEI-G---RGLEVILADSQSDPER-ALEALRDLIQQGVDGIIGPPSS--SSALAV 74 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHh-C---CceEEEEecCCCCHHH-HHHHHHHHHHcCCCEEEecCCC--HHHHHH
Confidence 4444433213445666666666543332 1 2345778888887733 3344555655678888776554 344448
Q ss_pred HHHHHHhCCCceeeCCCCcc
Q 019556 259 QEIAEDRGIPSYWIDSEKRI 278 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~~el 278 (339)
.+.+.+.+.|...+....+.
T Consensus 75 ~~~~~~~~ip~v~~~~~~~~ 94 (269)
T cd01391 75 VELAAAAGIPVVSLDATAPD 94 (269)
T ss_pred HHHHHHcCCcEEEecCCCCc
Confidence 88888999999888776543
No 23
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=78.11 E-value=14 Score=37.14 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=50.8
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|+...+.. ..++.+.+.|++ ...++..|+.+| +.+..-- +.++.+.+..+|++|-|||=.+-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~----------~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 92 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA----------AGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCI 92 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH----------cCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5788888655543 566677766654 123456678888 2222211 22333334579999999999999
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|...+.-.+
T Consensus 93 D~aK~ia~~~~~ 104 (386)
T cd08191 93 DLAKIAGLLLAH 104 (386)
T ss_pred HHHHHHHHHHhC
Confidence 999988776544
No 24
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=78.06 E-value=56 Score=30.90 Aligned_cols=138 Identities=20% Similarity=0.209 Sum_probs=79.7
Q ss_pred eEEEEE-ccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIAN-QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvs-QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
.||+|. +. +-.-|.+++..+.+... +.+ ..+...+|--+...+ +.++.|.+.+||.+|+.+..++ ..
T Consensus 3 ~IGvivp~~--~npff~~ii~gIe~~a~-~~G-----y~l~l~~t~~~~~~e--~~i~~l~~~~vDGiI~~s~~~~--~~ 70 (279)
T PF00532_consen 3 TIGVIVPDI--SNPFFAEIIRGIEQEAR-EHG-----YQLLLCNTGDDEEKE--EYIELLLQRRVDGIILASSEND--DE 70 (279)
T ss_dssp EEEEEESSS--TSHHHHHHHHHHHHHHH-HTT-----CEEEEEEETTTHHHH--HHHHHHHHTTSSEEEEESSSCT--CH
T ss_pred EEEEEECCC--CCcHHHHHHHHHHHHHH-HcC-----CEEEEecCCCchHHH--HHHHHHHhcCCCEEEEecccCC--hH
Confidence 455443 33 33447778777766322 222 234444544444333 7777787899999999954444 56
Q ss_pred HHHHHHHHhCCCceeeCCCCccC-CCC-cchhhhccc-hhhhhhccccCCCcE-EEEeecCCCcHHHHHHHHHHHHhh
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRIG-PGN-KIAYKLMHG-ELVEKENWLPKGQIT-IGITSGASTPDKAVEDVLKKVFEI 330 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el~-~~~-~~~~~~~~~-~~~~~~~wl~~~~~~-VGITAGASTP~~lI~eVi~~l~~~ 330 (339)
+|..+.+. +.|..++....+-+ .-. .......++ ++++- .+..|.++ |++.+|...-.+..+..--+.+.+
T Consensus 71 ~l~~~~~~-~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~--Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al 145 (279)
T PF00532_consen 71 ELRRLIKS-GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEY--LIKKGHRRPIAFIGGPEDSSTSRERLQGYRDAL 145 (279)
T ss_dssp HHHHHHHT-TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHH--HHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHH--HHhcccCCeEEEEecCcchHHHHHHHHHHHHHH
Confidence 78888876 78999999885444 211 111111112 22222 22358899 999999877666666665555443
No 25
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=77.10 E-value=20 Score=33.51 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCcc---cccccccc---C-C-CEEEECCCCCCHHHHHHHHhcCCcEEe--
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG---KKQFDVVN---K-G-DVVVLPAFGAAVEEMVTLNNKNVQIVD-- 83 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~---~~~~~~~~---~-g-~~VIIrAHGv~~~~~~~l~~~g~~iiD-- 83 (339)
+.++|..|+ ..-+.|++.|++..--.++ ...++.++ + | .++++|++|..+...+.|.++|+.+..
T Consensus 79 ~~~i~aVG~-----~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~ 153 (248)
T COG1587 79 NKKIAAVGE-----KTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVE 153 (248)
T ss_pred cCeEEEEcH-----HHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEe
Confidence 368999995 6789999999876543221 01122222 2 2 456889999999999999999999844
Q ss_pred ---CCCcchHHHHHHHHHHhcCCCe
Q 019556 84 ---TTCPWVSKVWTSVEKHKKGDYT 105 (339)
Q Consensus 84 ---aTCP~V~kv~~~~~~~~~~Gy~ 105 (339)
+.+|... .+.....+...++.
T Consensus 154 ~Y~~~~~~~~-~~~~~~~~~~~~~d 177 (248)
T COG1587 154 VYRTEPPPLD-EATLIELLKLGEVD 177 (248)
T ss_pred eeeecCCCcc-HHHHHHHHHhCCCC
Confidence 3344444 44445555555544
No 26
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.72 E-value=60 Score=29.40 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=62.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++...+. -.-|.++.+-+.+...+ ++ ..+.+.++ +...++|.. ++.|.+..+|.+|+.++.. ++..
T Consensus 2 Igvv~~~~~-~~~~~~~~~~i~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgii~~~~~~--~~~~ 70 (269)
T cd06281 2 IGCLVSDIT-NPLLAQLFSGAEDRLRA-AG-----YSLLIANS--LNDPERELEILRSFEQRRMDGIIIAPGDE--RDPE 70 (269)
T ss_pred EEEEecCCc-cccHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEecCCC--CcHH
Confidence 455554433 24456666555543222 22 12333322 112345544 4455556899999998643 3355
Q ss_pred HHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCC
Q 019556 258 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGAS 314 (339)
+.+.+++.+.|...+++..+ ....-+.... ..+. +.+ .++..|.++|++-+|..
T Consensus 71 ~~~~~~~~~ipvV~i~~~~~-~~~~~V~~d~~~~g~~a~~--~l~~~G~~~i~~l~~~~ 126 (269)
T cd06281 71 LVDALASLDLPIVLLDRDMG-GGADAVLFDHAAGMRQAVE--YLISLGHRRIALVGGGS 126 (269)
T ss_pred HHHHHHhCCCCEEEEecccC-CCCCEEEECcHHHHHHHHH--HHHHCCCcEEEEecCcc
Confidence 66677778899999987644 2110011111 1111 111 22335788999888754
No 27
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=74.69 E-value=15 Score=37.56 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=75.4
Q ss_pred CCcEEeCCCcchHHHHHHHHHHhc-CCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHhhhhhcCCCCCCCC
Q 019556 78 NVQIVDTTCPWVSKVWTSVEKHKK-GDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSS 152 (339)
Q Consensus 78 g~~iiDaTCP~V~kv~~~~~~~~~-~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~ 152 (339)
.+.+.|+-|.-...=|+.+++++. +=.-+|+||.++-.-+.=+.-.| .+++.|++.+|+..- +-| .|.+
T Consensus 263 ~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~g~~ty~Ie~~~eL~~~-~~i-----~h~~ 336 (387)
T PRK13371 263 HFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIERGIPSYHIDSPERILSG-NSI-----EHKP 336 (387)
T ss_pred cccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhcCCCEEEECCHHHcCCc-ccc-----cccc
Confidence 678899999999999999999976 68899999999977776655333 357899999987421 000 0000
Q ss_pred ChHHHHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHH
Q 019556 153 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKT 202 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~ 202 (339)
- ..+..+. +.-|+ ...++||+.+=+.-+....++++.+|+..
T Consensus 337 ~-~~~~~~t-----~~wl~--~~~~~VGITAGASTP~~lI~eVi~~l~~l 378 (387)
T PRK13371 337 L-GKELVVT-----ENWLP--EGPVTVGITSGASTPDKVVEDVIEKIFAL 378 (387)
T ss_pred c-cchhhhh-----hhhhc--cCCCEEEEecCCCCCHHHHHHHHHHHHHh
Confidence 0 0000000 00011 01358999999999999999999998763
No 28
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=73.67 E-value=21 Score=32.43 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=50.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
++++. ..++-.-|..+.+-+.+...+ .+ .++.+..+-.......| +.++.|....+|.+|+.+ ..+++...
T Consensus 2 igvi~-~~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~-~~~~~~~~ 73 (275)
T cd06320 2 YGVVL-KTLSNEFWRSLKEGYENEAKK-LG-----VSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSP-ISDVNLVP 73 (275)
T ss_pred eeEEE-ecCCCHHHHHHHHHHHHHHHH-hC-----CeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECC-CChHHhHH
Confidence 44444 234556677777777653222 22 12333322223344444 556666656899998764 34444445
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~~iPvV~~~~~ 91 (275)
T cd06320 74 AVERAKKKGIPVVNVNDK 91 (275)
T ss_pred HHHHHHHCCCeEEEECCC
Confidence 566777888998888764
No 29
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=73.27 E-value=26 Score=31.39 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
-++.+.|+-|+....+ +.+++|... .||+ |||+..|+++..+.+++...+.|.+.+.+..
T Consensus 41 ~~~~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~~~~~~~~~~~~~~~~iP~i~~~~~~ 101 (299)
T cd04509 41 LELVIYDDQSDPARAL-AAARRLCQQEGVDA--LVGPVSSGVALAVAPVAEALKIPLISPGATA 101 (299)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHhcccCceE--EEcCCCcHHHHHHHHHHhhCCceEEeccCCC
Confidence 3566778888666655 445666534 4664 5788888888899999999999988776554
No 30
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=72.64 E-value=72 Score=28.63 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=47.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++.-. .+-.-|..+..-+.+...+ ++ .++.++++=.+ .++| +.++.|.+..+|.+|++|...+ ..
T Consensus 2 i~vv~p~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~~---~~ 69 (268)
T cd06273 2 IGAIVPT-LDNAIFARVIQAFQETLAA-HG-----YTLLVASSGYD--LDREYAQARKLLERGVDGLALIGLDHS---PA 69 (268)
T ss_pred eEEEeCC-CCCchHHHHHHHHHHHHHH-CC-----CEEEEecCCCC--HHHHHHHHHHHHhcCCCEEEEeCCCCC---HH
Confidence 3455433 3334566666666553322 22 23334333222 3444 3445565567999999976544 34
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++.+++.+.|...+.+.
T Consensus 70 ~~~~l~~~~iPvv~~~~~ 87 (268)
T cd06273 70 LLDLLARRGVPYVATWNY 87 (268)
T ss_pred HHHHHHhCCCCEEEEcCC
Confidence 455677888999888764
No 31
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=72.32 E-value=13 Score=31.74 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=51.8
Q ss_pred hCCcEEEEEcCCCCcch-HHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCCC
Q 019556 239 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAST 315 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT-~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAST 315 (339)
+++-++|+-++-...++ .++-.+|++.+.|-.++.+-+||-. |+-. ....||||-.+ -
T Consensus 45 gkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~------------------a~Gk~~~~svvaI~d~g-~ 105 (122)
T PRK04175 45 GIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGK------------------AAGLEVGAAAAAIVDAG-K 105 (122)
T ss_pred CCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEechh-h
Confidence 34555554444444343 7999999999999999999998864 5511 35689999633 4
Q ss_pred cHHHHHHHHHHHHhhh
Q 019556 316 PDKAVEDVLKKVFEIK 331 (339)
Q Consensus 316 P~~lI~eVi~~l~~~~ 331 (339)
-+.+++++.+.+++++
T Consensus 106 a~~~~~~~~~~i~~~~ 121 (122)
T PRK04175 106 AKELVEDIVEKVNELK 121 (122)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 5777888888887763
No 32
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.16 E-value=26 Score=31.69 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=52.3
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
||+++.. +++-.-|..+...+.+...+ .+ .++.+.++-......+| +.++.|....+|.+|+.+.. ..-+.
T Consensus 1 ~Igvi~~-~~~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~-~~~~~ 72 (273)
T cd06310 1 KIALVPK-GTTSDFWQAVKAGAEAAAKE-LG-----VKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTD-AKALV 72 (273)
T ss_pred CeEEEec-CCCcHHHHHHHHHHHHHHHH-cC-----CEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCC-hhhhH
Confidence 5777765 46666677787777664332 22 22333322112344555 44555556789999997643 22223
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~ 275 (339)
..++.+++.+.|...+++.
T Consensus 73 ~~l~~~~~~~ipvV~~~~~ 91 (273)
T cd06310 73 PPLKEAKDAGIPVVLIDSG 91 (273)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4445556788899888764
No 33
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=71.16 E-value=4.2 Score=31.88 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=26.2
Q ss_pred ECCCCCCHH----HHHHHHhcCCcEEeCCCcchHHHHHH
Q 019556 61 LPAFGAAVE----EMVTLNNKNVQIVDTTCPWVSKVWTS 95 (339)
Q Consensus 61 IrAHGv~~~----~~~~l~~~g~~iiDaTCP~V~kv~~~ 95 (339)
+|-+|+... ..+.+++.|.+|+ .+||||.+-.+.
T Consensus 34 ~rGqGia~~L~~~~l~~a~~~~~kv~-p~C~y~~~~~~~ 71 (78)
T PF14542_consen 34 LRGQGIAKKLVEAALDYARENGLKVV-PTCSYVAKYFRR 71 (78)
T ss_dssp SSTTTHHHHHHHHHHHHHHHTT-EEE-ETSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHCCCEEE-EECHHHHHHHHh
Confidence 566788765 5778899999998 999999976643
No 34
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=70.90 E-value=15 Score=31.03 Aligned_cols=73 Identities=16% Similarity=0.417 Sum_probs=50.3
Q ss_pred hCCcEEEEEcCCCCcch-HHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCCC
Q 019556 239 EKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAST 315 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT-~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAST 315 (339)
+++-++|+-++-...++ .++-.+|+..+.|-+++.+-+||-. |+-. ....||||- ..-
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~------------------a~Gk~~~~svvaI~d-~g~ 101 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGA------------------AAGLEVGAASAAIVD-EGK 101 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHH------------------HhCCCCCeEEEEEEc-hhh
Confidence 45666666555554455 8999999999999999999998864 4411 356889984 334
Q ss_pred cHHHHHHHHHHHHhh
Q 019556 316 PDKAVEDVLKKVFEI 330 (339)
Q Consensus 316 P~~lI~eVi~~l~~~ 330 (339)
-+.+++++...++++
T Consensus 102 a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 102 AEELLKEIIEKVEAL 116 (117)
T ss_pred hHHHHHHHHHHHHhc
Confidence 456666666666654
No 35
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=70.88 E-value=17 Score=34.50 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=44.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.||=|++..-.+ ++++|. .+-.+..|+|+.+|+.+..+..++++.+.+.+.
T Consensus 41 i~l~~~D~~~~p~~a~~-~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 41 LELVVEDPASDPAFAAK-AARRLI-RDDKVDAVFGCYTSASRKAVLPVVERGRGLLFY 96 (333)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHH-hccCCcEEEecccHHHHHHHHHHHHhcCceEEe
Confidence 46778899998766664 668886 444678889999999999999999998876554
No 36
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.86 E-value=37 Score=30.71 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=50.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
++++.-. ++-.-|..+.+-+.....+ .+ .++.++++--+...++ +.+..+.+..+|.+|+.+ ..|.....+
T Consensus 2 i~vi~~~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~~~~~-~~i~~~~~~~~dgiii~~-~~~~~~~~~ 72 (277)
T cd06319 2 IAYIVSD-LRIPFWQIMGRGVKSKAKA-LG-----YDAVELSAENSAKKEL-ENLRTAIDKGVSGIIISP-TNSSAAVTL 72 (277)
T ss_pred eEEEeCC-CCchHHHHHHHHHHHHHHh-cC-----CeEEEecCCCCHHHHH-HHHHHHHhcCCCEEEEcC-CchhhhHHH
Confidence 4444322 3345567777666653332 22 2345555554433332 445555457899998754 444435567
Q ss_pred HHHHHHhCCCceeeCCC
Q 019556 259 QEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~ 275 (339)
++.+++.+.|...+...
T Consensus 73 l~~~~~~~ipvV~~~~~ 89 (277)
T cd06319 73 LKLAAQAKIPVVIADIG 89 (277)
T ss_pred HHHHHHCCCCEEEEecC
Confidence 78888889998888753
No 37
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=70.80 E-value=79 Score=28.31 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 187 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
++-.-|..+.+-+.+...+ .+ .++.++++ .-..++|.+ ...+.+..+|.+|+.+...+ .. .++.+++.
T Consensus 9 ~~~~~~~~i~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~-~~~~~~~~ 77 (260)
T cd06286 9 INHPYFSQLVDGIEKAALK-HG-----YKVVLLQT--NYDKEKELEYLELLKTKQVDGLILCSREND--WE-VIEPYTKY 77 (260)
T ss_pred CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHHcCCCEEEEeCCCCC--HH-HHHHHhcC
Confidence 3444566666666654332 22 23333332 334456644 44454567999999876433 23 33444455
Q ss_pred CCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecC
Q 019556 266 GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGA 313 (339)
Q Consensus 266 ~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGA 313 (339)
+ |...+.+..+ ....-+........-.-....+..|.++||+.+|.
T Consensus 78 ~-pvv~~~~~~~-~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~ 123 (260)
T cd06286 78 G-PIVLCEEYDS-KNISSVYIDHYEAFYEALKYLIQKGYRKIAYCIGR 123 (260)
T ss_pred C-CEEEEecccC-CCCCEEEECChHHHHHHHHHHHHCCCceEEEEcCC
Confidence 5 8888887644 21111211111111111112233478899998875
No 38
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=70.59 E-value=85 Score=29.67 Aligned_cols=126 Identities=16% Similarity=0.252 Sum_probs=66.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.++++... ++-.-|.++..-+.+...+ .+ ..+.+. .|....++|.. ++.|....+|.+|+.+... ..
T Consensus 65 ~~Igvv~~~-~~~~~~~~i~~gi~~~a~~-~g-----~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~ 133 (342)
T PRK10014 65 GVIGLIVRD-LSAPFYAELTAGLTEALEA-QG-----RMVFLL--QGGKDGEQLAQRFSTLLNQGVDGVVIAGAAG--SS 133 (342)
T ss_pred CEEEEEeCC-CccchHHHHHHHHHHHHHH-cC-----CEEEEE--eCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC--Cc
Confidence 468888754 4445677777666553222 22 112222 22333455543 4455556899999998643 23
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGAST 315 (339)
..+++.+++.+.|..+++...+.+.-.-+.-.. .++. +.+-. +..|.++||+.+|..+
T Consensus 134 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L--~~~G~~~I~~i~g~~~ 193 (342)
T PRK10014 134 DDLREMAEEKGIPVVFASRASYLDDVDTVRPDNMQAAQLLTEHL--IRNGHQRIAWLGGQSS 193 (342)
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCCCEEEeCCHHHHHHHHHHH--HHCCCCEEEEEcCCcc
Confidence 456677778889999887643322100011001 1111 12211 2247889999887543
No 39
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=70.25 E-value=34 Score=31.04 Aligned_cols=89 Identities=13% Similarity=0.233 Sum_probs=49.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
|+++.- +++-.-|..+..-+.+...+..+ ..+.++++ ++....-.+.++.+.+..+|.+|+.+...+. ...+
T Consensus 2 ig~~~~-~~~~~~~~~~~~~i~~~~~~~~g-----~~~~~~~~-~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~ 73 (270)
T cd06308 2 IGFSQC-NLADPWRAAMNDEIQREASNYPD-----VELIIADA-ADDNSKQVADIENFIRQGVDLLIISPNEAAP-LTPV 73 (270)
T ss_pred EEEEee-CCCCHHHHHHHHHHHHHHHhcCC-----cEEEEEcC-CCCHHHHHHHHHHHHHhCCCEEEEecCchhh-chHH
Confidence 555553 34445567777777553332111 22333332 2222222345555545789999887654332 2345
Q ss_pred HHHHHHhCCCceeeCCC
Q 019556 259 QEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~ 275 (339)
++.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 74 VEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHCCCCEEEeCCC
Confidence 55667788999988863
No 40
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=70.10 E-value=43 Score=29.67 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=52.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
|++|...+ +..-|.++.+.+.+...+ . ..++.++++--+. ..-++.+++|...++|.+|+.+. ++......
T Consensus 2 ig~i~p~~-~~~~~~~~~~~~~~~a~~-~-----g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgvi~~~~-~~~~~~~~ 72 (267)
T cd01536 2 IGLVVPSL-NNPFWQAMNKGAEAAAKE-L-----GVELIVLDAQNDV-SKQIQQIEDLIAQGVDGIIISPV-DSAALTPA 72 (267)
T ss_pred EEEEeccc-cCHHHHHHHHHHHHHHHh-c-----CceEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCC-CchhHHHH
Confidence 56666544 456677777777654332 1 2344455444322 22235666666568999988764 33433445
Q ss_pred HHHHHHhCCCceeeCCCC
Q 019556 259 QEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~~ 276 (339)
.+..++.+.|...+....
T Consensus 73 ~~~l~~~~ip~V~~~~~~ 90 (267)
T cd01536 73 LKKANAAGIPVVTVDSDI 90 (267)
T ss_pred HHHHHHCCCcEEEecCCC
Confidence 566667788888887754
No 41
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=69.95 E-value=6.8 Score=36.81 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=45.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
-++.+.|+-|+...-+ +++++|. .+ ++..|+|+..|+.+..+..++++.+.|.+..-.
T Consensus 41 i~~~~~D~~~~~~~~~-~~~~~li-~~-~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~~ 98 (334)
T cd06342 41 LELVVEDDQADPKQAV-AVAQKLV-DD-GVVGVVGHLNSGVTIPASPIYADAGIVMISPAA 98 (334)
T ss_pred EEEEEecCCCChHHHH-HHHHHHH-hC-CceEEECCCccHhHHHhHHHHHhCCCeEEecCC
Confidence 4677889999887664 5667776 45 778899999999999999999999888765443
No 42
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=69.54 E-value=21 Score=34.63 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=82.0
Q ss_pred ceEEecccccCHHHHHHHHHcC-CEEecCCccc-cccccccCCCEEEECCCCCCHHHHHHHHhcCCcE-EeCCCcchHHH
Q 019556 16 KIWITNEIIHNPTVNKRLEEMA-VQNIPVEEGK-KQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKV 92 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~G-v~~v~~~~~~-~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv 92 (339)
.|+++|=----....++|...+ ..++.+..+. ..+.+. .+ .+++.-.|-.....+.+++.++.+ ||||=||-.++
T Consensus 4 ~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~-~~-~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~i 81 (257)
T COG2099 4 RILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQ-IG-PVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARI 81 (257)
T ss_pred eEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhc-cC-CeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHH
Confidence 5788888888888899999888 4445443321 122221 12 378888999999999999999987 99999999999
Q ss_pred HHHHHHHhc-CCCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHh
Q 019556 93 WTSVEKHKK-GDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 139 (339)
Q Consensus 93 ~~~~~~~~~-~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 139 (339)
-+-+-+.++ .|-..+-+=.+.-... ..+.+-|.|.+|+..+
T Consensus 82 S~Na~~aake~gipy~r~eRP~~~~~------gd~~~~V~d~~ea~~~ 123 (257)
T COG2099 82 SQNAARAAKETGIPYLRLERPPWAPN------GDNWIEVADIEEAAEA 123 (257)
T ss_pred HHHHHHHHHHhCCcEEEEECCccccC------CCceEEecCHHHHHHH
Confidence 877777666 4766666655442211 1346788888888665
No 43
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=68.32 E-value=6.9 Score=31.67 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=38.6
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++++-++-..-.+.+|-++|++.+.|..+|++-.||-.
T Consensus 28 g~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGk 69 (84)
T PRK13600 28 DQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGK 69 (84)
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 568899999999999999999999999999999999999865
No 44
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=68.18 E-value=7.9 Score=36.86 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=43.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.||-|+.+.-++ ++++|. .+=.+.+++|+..|+.+.-+..++++.+.+.+-
T Consensus 41 i~l~~~D~~~~~~~a~~-~a~~li-~~~~V~~i~G~~~s~~~~a~~~~~~~~~vp~i~ 96 (340)
T cd06349 41 LNIVFEDSKSDPRQAVT-IAQKFV-ADPRIVAVLGDFSSGVSMAASPIYQRAGLVQLS 96 (340)
T ss_pred EEEEEeCCCCChHHHHH-HHHHHh-ccCCeEEEECCCccHhHHHhHHHHHhCCCeEEe
Confidence 45678899998888774 455665 333566788999999999999999999887553
No 45
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=67.80 E-value=10 Score=36.19 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=34.7
Q ss_pred HHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEee
Q 019556 232 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITS 311 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITA 311 (339)
.+..| ..+|++++-|| ||.+|.+.-++.+.. +.|. +++.+|.-.+|.+|
T Consensus 76 ~~~~l--~~ad~I~~~GG----nq~~l~~~l~~t~l~-------------~~l~------------~~~~~G~vi~G~SA 124 (250)
T TIGR02069 76 AIALL--SNATGIFFTGG----DQLRITSLLGDTPLL-------------DRLR------------KRVHEGIILGGTSA 124 (250)
T ss_pred HHHHH--hhCCEEEEeCC----CHHHHHHHHcCCcHH-------------HHHH------------HHHHcCCeEEEccH
Confidence 34455 37999999997 778888777554310 0111 33436788899999
Q ss_pred cCC
Q 019556 312 GAS 314 (339)
Q Consensus 312 GAS 314 (339)
||+
T Consensus 125 GA~ 127 (250)
T TIGR02069 125 GAA 127 (250)
T ss_pred HHH
Confidence 996
No 46
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.82 E-value=12 Score=30.04 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=38.4
Q ss_pred cHHHHHHHHH--HHHhhhhCCcEEEEEcCCCCcch-HHHHHHHHHhCCCceeeCC
Q 019556 223 CDATQERQDA--MYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 223 C~AT~~RQ~a--~~~la~~~vD~miVVGG~nSSNT-~rL~eia~~~~~~ty~Ie~ 274 (339)
+.....++.+ +.... +++|++||+=+..|=|+ ++.-+.|++.+.|.++..+
T Consensus 30 g~~~~~~~~~~~l~~~i-~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 30 GRDGGDEKKASRLPSKI-KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred ecCCCCccchhHHHHhc-CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 3344444444 77665 67899999999999995 4677899999998887763
No 47
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=66.11 E-value=12 Score=33.70 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhcCCCeEEEEe
Q 019556 69 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 69 ~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~iIIiG 110 (339)
..++.+.++|..| +|+|+..-....+.++.+.+.||+|.|+-
T Consensus 84 ~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~ 126 (199)
T PF06414_consen 84 KLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYY 126 (199)
T ss_dssp HHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEE
T ss_pred HHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEE
Confidence 4566666766665 89999999999999999999999988875
No 48
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=64.90 E-value=41 Score=30.03 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=42.6
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++.+.|+=|++.... +.+++|....+|++ ||+..|.++..+.+++++.+.|.+......+
T Consensus 42 ~~~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~ 101 (298)
T cd06268 42 ELVVEDTQGDPEAAA-AAARELVDDGVDAV--IGPLSSGVALAAAPVAEEAGVPLISPGATSP 101 (298)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhCCceEE--EcCCcchhHHhhHHHHHhCCCcEEccCCCCc
Confidence 466778888665433 45566654457754 6887788888899999999999887765543
No 49
>PRK14072 6-phosphofructokinase; Provisional
Probab=63.79 E-value=9.4 Score=39.20 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhC--CCceee
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I 272 (339)
...+++++..|..-.+|++|||||-.|-.+- +|.|.+++.| .+...|
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgI 138 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGI 138 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 4567777777766789999999999998665 8899888777 555554
No 50
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=63.69 E-value=45 Score=30.35 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=51.9
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
||+++...+.+-.-|..+.+-+.+...+ .+ .++.++++--+......+.++.|....+|.+|+.+..... ...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g-----~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~ 73 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LG-----VDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDA-LDP 73 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hC-----CEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH-hHH
Confidence 3566665432445677777777664332 22 2344444433122223355556655789999998753222 234
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.|.|...+.+.
T Consensus 74 ~l~~~~~~~ipvV~~~~~ 91 (271)
T cd06312 74 AIKRAVAAGIPVISFNAG 91 (271)
T ss_pred HHHHHHHCCCeEEEeCCC
Confidence 456667888899888764
No 51
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=62.15 E-value=14 Score=33.92 Aligned_cols=71 Identities=21% Similarity=0.226 Sum_probs=39.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
.++++++--+-..++ ......+.|.+..+. ++...+++ . -++....|. ++|++++=|| ||.
T Consensus 32 ~~i~~IptAs~~~~~---~~~~~~~a~~~l~G~-----~~~~~~~~--~---~~~~~~~l~--~ad~I~l~GG----~~~ 92 (212)
T cd03146 32 PKVLFVPTASGDRDE---YTARFYAAFESLRGV-----EVSHLHLF--D---TEDPLDALL--EADVIYVGGG----NTF 92 (212)
T ss_pred CeEEEECCCCCCHHH---HHHHHHHHHhhccCc-----EEEEEecc--C---cccHHHHHh--cCCEEEECCc----hHH
Confidence 589999877765443 333333333322021 12222221 1 223345553 6899998886 999
Q ss_pred HHHHHHHHhC
Q 019556 257 HLQEIAEDRG 266 (339)
Q Consensus 257 rL~eia~~~~ 266 (339)
+|.+.-++.+
T Consensus 93 ~~~~~l~~~~ 102 (212)
T cd03146 93 NLLAQWREHG 102 (212)
T ss_pred HHHHHHHHcC
Confidence 9998887765
No 52
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=61.95 E-value=51 Score=29.75 Aligned_cols=88 Identities=15% Similarity=0.211 Sum_probs=51.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++... .+-.-|..+.+-+.....+..+ ..+.+.++ +....+| +.++.+.+..+|.+|+.+. .++.+..
T Consensus 2 igvi~~~-~~~~~~~~~~~gi~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~~~ 72 (272)
T cd06301 2 IGVSMAN-FDDNFLTLLRNAMKEHAKVLGG-----VELQFEDA--KNDVATQLSQVENFIAQGVDAIIVVPV-DTAATAP 72 (272)
T ss_pred eeEeecc-cCCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhhHH
Confidence 5565543 3445677777766654332121 23444433 2233344 4455655568999998664 4555566
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++.+++.+.|...+.+.
T Consensus 73 ~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 73 IVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHCCCeEEEecCC
Confidence 777778888999888764
No 53
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.82 E-value=12 Score=35.75 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=43.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
.++.+.||-|+...-+ .++++|. .+=.+..|+|+..|+++.....++.+.+.+.+.
T Consensus 40 ielv~~D~~~~p~~a~-~~a~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~ 95 (332)
T cd06344 40 LKVVIANDGNDPEIAK-KVADELV-KDPEILGVVGHYSSDATLAALDIYQKAKLVLIS 95 (332)
T ss_pred EEEEEECCCCChHHHH-HHHHHHh-cccCceEEEcCCCcHHHHHHHHHHhhcCceEEc
Confidence 4677889999876666 4667886 444577888999999999999999988877544
No 54
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.53 E-value=26 Score=33.62 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=64.3
Q ss_pred CHHHHHHHHHcCCEEecCC---ccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhc
Q 019556 26 NPTVNKRLEEMAVQNIPVE---EGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKK 101 (339)
Q Consensus 26 N~~Vv~~L~~~Gv~~v~~~---~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~ 101 (339)
=..+.+.|.++|..++-.. .+.+.+... .+..|+.-..+- .+..+.+++.++.+ ||||=||-..+.+.+.+.++
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~-g~~~v~~g~l~~-~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~ 89 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH-QALTVHTGALDP-QELREFLKRHSIDILVDATHPFAAQITTNATAVCK 89 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCcccccccc-CCceEEECCCCH-HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHH
Confidence 4567889999998766431 111112111 122344443332 23447777777765 99999999999998888776
Q ss_pred C-CCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHh
Q 019556 102 G-DYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYV 139 (339)
Q Consensus 102 ~-Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~ 139 (339)
+ |-..+=+-.+ +.. -.+..+.+.|.+++..+
T Consensus 90 ~~~ipylR~eR~---~~~----~~~~~~~v~~~~ea~~~ 121 (256)
T TIGR00715 90 ELGIPYVRFERP---PLA----LGKNIIEVPDIEEATRV 121 (256)
T ss_pred HhCCcEEEEECC---CCC----CCCCeEEeCCHHHHHHH
Confidence 4 7777766543 210 01245677888876543
No 55
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.22 E-value=72 Score=28.97 Aligned_cols=87 Identities=14% Similarity=0.197 Sum_probs=49.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++. .+++-.-|..+..-+.+...+ ++ .++.+.+ |......| +.++.+.+..+|.+|+.+.. ++....
T Consensus 2 igv~~-~~~~~~~~~~~~~~i~~~~~~-~g-----~~v~~~~--~~~~~~~~~~~i~~~~~~~~Dgiii~~~~-~~~~~~ 71 (282)
T cd06318 2 IGFSQ-YTLNSPFFAALTEAAKAHAKA-LG-----YELISTD--AQGDLTKQIADVEDLLTRGVNVLIINPVD-PEGLVP 71 (282)
T ss_pred eeEEe-ccccCHHHHHHHHHHHHHHHH-cC-----CEEEEEc--CCCCHHHHHHHHHHHHHcCCCEEEEecCC-ccchHH
Confidence 45544 234556677777766654332 22 2233332 22222333 45566666789999986543 333346
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++.+++.|.|...+++.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (282)
T cd06318 72 AVAAAKAAGVPVVVVDSS 89 (282)
T ss_pred HHHHHHHCCCCEEEecCC
Confidence 667777889998888763
No 56
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=59.94 E-value=51 Score=32.61 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=46.6
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccH-HH-HHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-AT-QERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT-~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|...+... ..++.+.+.|++. ...+.+++.+.. .| ..=++.++.+....+|++|-|||-..-
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 93 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEA----------GIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVL 93 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 5888888766544 5556676666541 122344444321 11 122233334433579999999999999
Q ss_pred chHHHHHHHH
Q 019556 254 NTSHLQEIAE 263 (339)
Q Consensus 254 NT~rL~eia~ 263 (339)
.+-|.+.+.-
T Consensus 94 D~AK~va~~~ 103 (370)
T cd08551 94 DTAKAIALLA 103 (370)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 57
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=59.82 E-value=27 Score=33.76 Aligned_cols=58 Identities=12% Similarity=-0.022 Sum_probs=46.3
Q ss_pred ccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcc---hHHHHHHHHHhCCCcee
Q 019556 212 VNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 212 ~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSN---T~rL~eia~~~~~~ty~ 271 (339)
...++.+.|+-|+..+--+.+.+.|. .+ .+.+|+|+..|+. +.-+..+|...+.|..-
T Consensus 35 ~~~~l~~~d~~~d~~~~~~~~~~~l~-~~-~v~~iig~~~s~~~~~~~~~~~v~~~~~iP~Is 95 (362)
T cd06367 35 LSLEAVAVSNDTDPISLLLSVCDLLV-VQ-VVAGVVFSDPTDEEAVAQILDFTSAQTRIPVVG 95 (362)
T ss_pred cceEEEEEecCCCHHHHHHHHHHHhc-cc-ceEEEEecCCCCccchhhhhhhhhhhhcCcEEE
Confidence 44567778899988777777777775 44 6778889999999 99999999999988643
No 58
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=58.71 E-value=14 Score=35.47 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=44.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
.++.+.|+-++.+.-+ +++++|. .+=.+..|+|+..|+++..+..++++.+.+.+.
T Consensus 41 i~lv~~D~~~~p~~a~-~~a~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (347)
T cd06335 41 LELVERDDRGNPARGL-QNAQELA-ADEKVVAVLGGLHTPVALANLEFIQQNKIPLIG 96 (347)
T ss_pred EEEEeccCCCCcHHHH-HHHHHHh-ccCCeEEEEcCCCCHHHHhhhHHHHhcCCcEEe
Confidence 4677889988877766 4556776 444578888999999999999999999877654
No 59
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=58.24 E-value=11 Score=36.25 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=42.4
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.||-|+.+. -+.++++|. .+=.+..|||+.+|+.+..+..++++.+.+.+.
T Consensus 41 v~lv~~D~~~~p~~-a~~~~~~Li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~ 96 (334)
T cd06356 41 VELVDYDTQSDNER-YQQYAQRLA-LQDKVDVVWGGISSASREAIRPIMDRTKQLYFY 96 (334)
T ss_pred EEEEEECCCCCHHH-HHHHHHHHH-HhCCCCEEEeCcchHHHHHHHHHHHhcCceEEe
Confidence 46778899998754 446667776 333466778999999999999999998766544
No 60
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=58.18 E-value=76 Score=25.67 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=49.1
Q ss_pred HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEe
Q 019556 231 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGIT 310 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGIT 310 (339)
+++.++. .+ ..+++....+|+....|.+...-.+.|++.+=+.. ..+.|...
T Consensus 43 ~~v~~~l-~~-~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~--------------------------~g~~l~~~ 94 (114)
T cd02958 43 ESVKEFI-RE-NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR--------------------------TGEVLKVW 94 (114)
T ss_pred HHHHHHH-Hh-CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc--------------------------cCcEeEEE
Confidence 5677665 33 78888889988888887777666666665443221 23567788
Q ss_pred ecCCCcHHHHHHHHHHHH
Q 019556 311 SGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 311 AGASTP~~lI~eVi~~l~ 328 (339)
.|..+|+.++..+...+.
T Consensus 95 ~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 95 SGNITPEDLLSQLIEFLE 112 (114)
T ss_pred cCCCCHHHHHHHHHHHHh
Confidence 999999988887776654
No 61
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=56.79 E-value=1.2e+02 Score=26.89 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=21.8
Q ss_pred ceEEecccccCHHHHHHHHHcCCEEec
Q 019556 16 KIWITNEIIHNPTVNKRLEEMAVQNIP 42 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~ 42 (339)
+.|..----.|+.+++.|++.|..++.
T Consensus 99 ~~fr~P~G~~~~~~~~~l~~~G~~~v~ 125 (191)
T TIGR02764 99 TLFRPPSGAFNKAVLKAAESLGYTVVH 125 (191)
T ss_pred CEEECCCcCCCHHHHHHHHHcCCeEEE
Confidence 356555556899999999999999875
No 62
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=56.54 E-value=23 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=31.4
Q ss_pred HHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 232 AMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.+.+.+ .++|++||||-.-+ .-...|...|++.|.+.+.|.-
T Consensus 164 ~a~~~~-~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~ 206 (222)
T cd01413 164 EAIEAA-KEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNA 206 (222)
T ss_pred HHHHHH-hcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcC
Confidence 334444 47999999998654 3456799999999988887764
No 63
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=56.49 E-value=31 Score=29.47 Aligned_cols=43 Identities=21% Similarity=0.496 Sum_probs=38.3
Q ss_pred hhCCcEEEEEcCCC-CcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 238 EEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 238 ~~~vD~miVVGG~n-SSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
.+++.++++-.+-. .-.+.+|-.+|++.+.|-.+|.|..+|..
T Consensus 41 ~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 41 RGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGK 84 (116)
T ss_pred cCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHH
Confidence 36789999999988 77788999999999999999999999974
No 64
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=55.70 E-value=78 Score=27.79 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=63.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
++++..++ +..-|..+.+-+++.... ++ .++.+.+ +.....+| +.++.+....+|++++.+...++ ..
T Consensus 2 i~~v~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~--~~ 70 (264)
T cd06267 2 IGVIVPDI-SNPFFAELLRGIEEAARE-AG-----YSVLLCN--SDEDPEKEREALELLLSRRVDGIILAPSRLDD--EL 70 (264)
T ss_pred EEEEECCC-CCHHHHHHHHHHHHHHHH-cC-----CEEEEEc--CCCCHHHHHHHHHHHHHcCcCEEEEecCCcch--HH
Confidence 56677665 556677777777664332 22 1233221 12222333 34445555689999887665433 22
Q ss_pred HHHHHHHhCCCceeeCCCCccCCCCcchhhh----ccchhhhhhccc-cCCCcEEEEeecCCC
Q 019556 258 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL----MHGELVEKENWL-PKGQITIGITSGAST 315 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~----~~~~~~~~~~wl-~~~~~~VGITAGAST 315 (339)
++.+++.+.|...+.+..+-+. +.+-. ..+ ..--.|| ..|.++|++-.|...
T Consensus 71 -~~~~~~~~ipvv~~~~~~~~~~---~~~v~~d~~~~g--~~~~~~l~~~g~~~i~~i~~~~~ 127 (264)
T cd06267 71 -LEELAALGIPVVLVDRPLDGLG---VDSVGIDNRAGA--YLAVEHLIELGHRRIAFIGGPPD 127 (264)
T ss_pred -HHHHHHcCCCEEEecccccCCC---CCEEeeccHHHH--HHHHHHHHHCCCceEEEecCCCc
Confidence 5667788899888876532111 11110 111 1111333 236789999877654
No 65
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.65 E-value=1.5e+02 Score=26.49 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=60.7
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
++++... ++..-|..+..-+.+... ..+ .++.++++ +...+.| +.++.|.++.+|.+|+.+...++ .
T Consensus 2 i~vi~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~---~ 69 (270)
T cd06296 2 IGLVFPD-LDSPWASEVLRGVEEAAA-AAG-----YDVVLSES--GRRTSPERQWVERLSARRTDGVILVTPELTS---A 69 (270)
T ss_pred eEEEECC-CCCccHHHHHHHHHHHHH-HcC-----CeEEEecC--CCchHHHHHHHHHHHHcCCCEEEEecCCCCh---H
Confidence 3444432 333446666666654322 222 22333221 2222444 45566656789999998754332 3
Q ss_pred HHHHHHHhCCCceeeCCCC----ccCCCCcchhhh-ccchhhhhhccccCCCcEEEEeecCCC
Q 019556 258 LQEIAEDRGIPSYWIDSEK----RIGPGNKIAYKL-MHGELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~----el~~~~~~~~~~-~~~~~~~~~~wl~~~~~~VGITAGAST 315 (339)
.++.+++.+.|...+++.. .++. +.... ..++. -....+.+|.++|++..|...
T Consensus 70 ~~~~~~~~~ipvV~i~~~~~~~~~~~~---v~~d~~~~~~~-a~~~l~~~g~~~i~~i~~~~~ 128 (270)
T cd06296 70 QRAALRRTGIPFVVVDPAGDPDADVPS---VGATNWAGGLA-ATEHLLELGHRRIGFITGPPD 128 (270)
T ss_pred HHHHHhcCCCCEEEEecccCCCCCCCE---EEeCcHHHHHH-HHHHHHHcCCCcEEEEcCCCc
Confidence 3566677889999998642 1211 11111 11211 111223346789999877543
No 66
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=55.23 E-value=17 Score=28.16 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhcCCCe-EEEEecCC
Q 019556 69 EEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 113 (339)
Q Consensus 69 ~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~-iIIiG~~~ 113 (339)
++...|++.|+.+ +|-. -.++-+..+...+.|+. ++|+|+.+
T Consensus 22 ~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 22 KLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred HHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCch
Confidence 3567777788887 5554 24666677777778887 67778554
No 67
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=55.00 E-value=55 Score=34.15 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=40.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHH---HHHHHHHHHHhh-hhCCcEEEEEcCC
Q 019556 175 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA---TQERQDAMYKMV-EEKVDLILVVGGW 250 (339)
Q Consensus 175 ~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A---T~~RQ~a~~~la-~~~vD~miVVGG~ 250 (339)
.+++||||+ .-+-.-+.+|...++.+||.. ++.++.|--.- ..+==+|++.+- .+.+|++||.=|-
T Consensus 134 ~p~~IGVIT--S~tgAairDIl~~~~rR~P~~--------~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 134 FPKKIGVIT--SPTGAALRDILHTLSRRFPSV--------EVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred CCCeEEEEc--CCchHHHHHHHHHHHhhCCCC--------eEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 457899974 444566788888888766532 23333322111 111112222211 2459999998665
Q ss_pred CC------cchHHHHH
Q 019556 251 NS------SNTSHLQE 260 (339)
Q Consensus 251 nS------SNT~rL~e 260 (339)
.| =|--.|+.
T Consensus 204 GSiEDLW~FNdE~vaR 219 (440)
T COG1570 204 GSIEDLWAFNDEIVAR 219 (440)
T ss_pred chHHHHhccChHHHHH
Confidence 55 35555443
No 68
>PRK09453 phosphodiesterase; Provisional
Probab=54.26 E-value=75 Score=27.98 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=22.3
Q ss_pred CCceEEecccccC------------HHHHHHHHHcC--CEEecC
Q 019556 14 EEKIWITNEIIHN------------PTVNKRLEEMA--VQNIPV 43 (339)
Q Consensus 14 ~~~Vy~lG~lIHN------------~~Vv~~L~~~G--v~~v~~ 43 (339)
...|+.+|+|++- ..+.+.|++.| +.+|..
T Consensus 28 ~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~G 71 (182)
T PRK09453 28 ADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRG 71 (182)
T ss_pred CCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEcc
Confidence 3579999999962 45788898886 556654
No 69
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=54.09 E-value=58 Score=31.22 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
-++.+.|+-++...-++ ++++|. ..-.+..|||+..|+.+.-+.+++++.+.+.+.-
T Consensus 48 i~l~~~D~~~~~~~a~~-~a~~li-~~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~ 104 (362)
T cd06343 48 IELIVEDDGYSPPKTVE-QTRKLV-ESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFP 104 (362)
T ss_pred EEEEEecCCCChHHHHH-HHHHHH-hhcCeEEEEecCCcHHHHHhHHHHHhcCCceEec
Confidence 45667888776655554 555665 3446788899999999999999999998887654
No 70
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=53.74 E-value=22 Score=33.71 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=45.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
-++...||-|+++.-. +++++|+ .+-.+..|||+..|+.+..+.+++++.+.+.+.....
T Consensus 45 i~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aviG~~~s~~~~a~~~~~~~~~vp~i~~~~~ 104 (345)
T cd06338 45 VELIYYDDQSNPARAA-RAYERLI-TQDKVDFLLGPYSSGLTLAAAPVAEKYGVPMVAGSGA 104 (345)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHH-hhcCccEEecCCcchhHHHHHHHHHHhCCcEEecCCC
Confidence 4566889988877555 5556776 3335777899999999999999999998877665544
No 71
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=53.73 E-value=20 Score=36.89 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHh--CCCceee
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDR--GIPSYWI 272 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~--~~~ty~I 272 (339)
..++.+++.|....+|.+++|||-.|-.+- +|++.+++. +.+...|
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgI 147 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGL 147 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEe
Confidence 356777777876789999999999997665 888888776 4566555
No 72
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=53.66 E-value=15 Score=28.09 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=29.9
Q ss_pred ECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 61 LPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 61 IrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
+..||.||.+.+.++..|+. -...||...+.+.++||--
T Consensus 19 ~~~~G~~Pt~rEIa~~~g~~-------S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 19 IEENGYPPTVREIAEALGLK-------STSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHSS---HHHHHHHHTSS-------SHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHHHHHhCCC-------ChHHHHHHHHHHHHCcCcc
Confidence 34589999999999998874 3588999999999999853
No 73
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.59 E-value=65 Score=32.19 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=47.9
Q ss_pred ceEEEEEccCCChH-HHHHHHHHHHHHHhhhcccccccccccccccccH-HHHHHHH-HHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQERQD-AMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT~~RQ~-a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|....+... .++.+.+.|++ . ..++.+|+.+|. .|.+.=. ++..+-...+|++|-|||-.+-
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~-----~-----~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsvi 98 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEE-----A-----GLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPI 98 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHH-----c-----CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 58888877655332 45666666654 1 123445665652 3332222 2222223579999999999999
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|..-+....
T Consensus 99 D~AK~ia~~~~~ 110 (377)
T cd08188 99 DCAKGIGIVASN 110 (377)
T ss_pred HHHHHHHHHHHC
Confidence 999987765443
No 74
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=53.40 E-value=19 Score=34.51 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=66.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee-eCCCCccCCCC--cchhhh-c
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW-IDSEKRIGPGN--KIAYKL-M 289 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~-Ie~~~el~~~~--~~~~~~-~ 289 (339)
-++.+.|+-|+.+.-++ ++++|. .+-++..|||+..|+-+..+..++++.+.+... .-+..+|.... .+.|.. -
T Consensus 42 i~lv~~D~~~~p~~a~~-~~~~li-~~~~V~avvG~~~S~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~ 119 (333)
T cd06328 42 IEVIVKDDAGNPEVAVS-LARELI-GDDGVDILVGSTSSGVALAVLPVAEENKKILIVEPAAADSITGKNWNRYTFRTGR 119 (333)
T ss_pred EEEEEecCCCChHHHHH-HHHHHH-HhcCCeEEEccCCcHHHHHHHHHHHHhCCcEEecCCCCchhhccCCCCcEEEecC
Confidence 45678899998888774 556666 344567777999999999999999999887764 34445554311 111111 0
Q ss_pred cc--hhhhhhccccCCCcEEEEe-ecCCCcHHHHHHHHHHHHhh
Q 019556 290 HG--ELVEKENWLPKGQITIGIT-SGASTPDKAVEDVLKKVFEI 330 (339)
Q Consensus 290 ~~--~~~~~~~wl~~~~~~VGIT-AGASTP~~lI~eVi~~l~~~ 330 (339)
.. +...-..++.+..++|++. ...+....+.+.+...+++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~ 163 (333)
T cd06328 120 NSSQDAIAAAAALGKPGKKIATLAQDYAFGRDGVAAFKAALEKL 163 (333)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEecCccccHHHHHHHHHHHHhC
Confidence 00 1100001121223455544 44444567777777777653
No 75
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=52.79 E-value=86 Score=31.52 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=49.3
Q ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHH-HHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQE-RQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~-RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|.-..+. ...++++.+.|++ ....+.+|+.+. +.|.+ =+++++.+...++|++|-|||-.+-
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~----------~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~i 101 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEE----------RNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPH 101 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHH----------cCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 588888765443 2356677777654 122345566653 12222 1223333323579999999999999
Q ss_pred chHHHHHHHHHhC
Q 019556 254 NTSHLQEIAEDRG 266 (339)
Q Consensus 254 NT~rL~eia~~~~ 266 (339)
.+-|..-++-...
T Consensus 102 D~AK~ia~~~~~~ 114 (383)
T PRK09860 102 DCAKGIALVAANG 114 (383)
T ss_pred HHHHHHHHHHHCC
Confidence 9999988765543
No 76
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=52.73 E-value=40 Score=30.53 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=27.5
Q ss_pred EEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCC
Q 019556 58 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSH 114 (339)
Q Consensus 58 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~H 114 (339)
.=|++||=.|...++.+ +...++|+.+||-|--+-
T Consensus 34 ~~VvSAHRTPe~m~~ya----------------------~~a~~~g~~viIAgAGgA 68 (162)
T COG0041 34 VRVVSAHRTPEKMFEYA----------------------EEAEERGVKVIIAGAGGA 68 (162)
T ss_pred EEEEeccCCHHHHHHHH----------------------HHHHHCCCeEEEecCcch
Confidence 35799999998777666 566789999999986553
No 77
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.68 E-value=10 Score=32.95 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcc
Q 019556 220 NTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENW 299 (339)
Q Consensus 220 nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~w 299 (339)
..++..+.+.++....| ..+|++++-|| ||.+|++.-++.+... .|. +.
T Consensus 17 ~~l~~~~~~~~~~~~~i--~~ad~I~~~GG----~~~~l~~~l~~t~l~~-------------~i~------------~~ 65 (154)
T PF03575_consen 17 DQLDLSDRNDADILEAI--READAIFLGGG----DTFRLLRQLKETGLDE-------------AIR------------EA 65 (154)
T ss_dssp EECCCTSCGHHHHHHHH--HHSSEEEE--S-----HHHHHHHHHHTTHHH-------------HHH------------HH
T ss_pred EEEeccCCChHHHHHHH--HhCCEEEECCC----CHHHHHHHHHhCCHHH-------------HHH------------HH
Confidence 33444443444555555 36999999997 8899988887775211 111 33
Q ss_pred ccCCCcEEEEeecCCC
Q 019556 300 LPKGQITIGITSGAST 315 (339)
Q Consensus 300 l~~~~~~VGITAGAST 315 (339)
+.+|.-.+|.+|||..
T Consensus 66 ~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 66 YRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHTTSEEEEETHHHHC
T ss_pred HHCCCEEEEEChHHhh
Confidence 3367778999999843
No 78
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=52.66 E-value=99 Score=27.58 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 187 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
++-.-|..+...+.+...+ ++ .++.+.++ ....+++ +.++++.+.++|.+|+. +.+++.+...++.+++.
T Consensus 9 ~~~~~~~~~~~~i~~~~~~-~g-----~~v~~~~~--~~~~~~~~~~~~~~~~~~~dgii~~-~~~~~~~~~~l~~l~~~ 79 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKE-LG-----YELTVLDA--QNDAAKQLNDIEDLITRGVDAIIIN-PTDSDAVVPAVKAANEA 79 (268)
T ss_pred ccCHHHHHHHHHHHHHHHH-cC-----ceEEecCC--CCCHHHHHHHHHHHHHcCCCEEEEc-CCChHHHHHHHHHHHHC
Confidence 4455567777666553332 22 22333322 1122333 55556555689999885 45555445566666788
Q ss_pred CCCceeeCCCC
Q 019556 266 GIPSYWIDSEK 276 (339)
Q Consensus 266 ~~~ty~Ie~~~ 276 (339)
+.|...+.+..
T Consensus 80 ~ipvv~~~~~~ 90 (268)
T cd06323 80 GIPVFTIDREA 90 (268)
T ss_pred CCcEEEEccCC
Confidence 89998887753
No 79
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=52.49 E-value=21 Score=34.08 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
-++.+.|+-|+.+.-+ +++++|. .+=.+..|||+..|+.+..+.+++++.+.+.+..
T Consensus 41 v~l~~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (344)
T cd06345 41 VELVFEDTEGSPEDAV-RAFERLV-SQDKVDAVVGGYSSEVVLALQDVAAENKVPFIVT 97 (344)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHh-ccCCceEEECCcchHHHHHHHHHHHHcCCcEEec
Confidence 3567889999877555 4555665 3335667899999999999999999999887643
No 80
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=52.17 E-value=14 Score=31.19 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred CCcchHHHHHHHHHhCCCceeeC----CCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC-CcHHHHHHHHH
Q 019556 251 NSSNTSHLQEIAEDRGIPSYWID----SEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS-TPDKAVEDVLK 325 (339)
Q Consensus 251 nSSNT~rL~eia~~~~~~ty~Ie----~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS-TP~~lI~eVi~ 325 (339)
..+|..-|.+.+++.|....... +.++|.. .-..|+ +.+..|=+|.|+| +|..++.+++.
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~--------------~l~~~~-~~~dliittGG~g~g~~D~t~~~l~ 80 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKE--------------ALREAL-ERADLVITTGGTGPGPDDVTPEAVA 80 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHH--------------HHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHH
Confidence 47888999999999996543332 2222221 122666 4677777777777 79999999988
Q ss_pred HHH
Q 019556 326 KVF 328 (339)
Q Consensus 326 ~l~ 328 (339)
.+-
T Consensus 81 ~~~ 83 (135)
T smart00852 81 EAL 83 (135)
T ss_pred HHh
Confidence 873
No 81
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=51.75 E-value=99 Score=28.06 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=48.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~-la~~~vD~miVVGG~nSSNT~r 257 (339)
++++.. +++-.-|..+.+-+++...+. +.......+.+.++- ...+.|....+ |.+..+|.+|+.+...++ ...
T Consensus 2 Ig~i~~-~~~~~f~~~~~~gi~~~a~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vDgiii~~~~~~~-~~~ 76 (274)
T cd06311 2 IGVSIP-AADHGWTAGIVWHAQAAAKKL-EAAYPDVEFILVTAS--NDTEQQNAQQDLLINRKIDALVILPFESAP-LTQ 76 (274)
T ss_pred eeeecc-CCCCcHHHHHHHHHHHHHHHh-hhhCCCeEEEEEcCC--CCHHHHHHHHHHHHHcCCCEEEEeCCCchh-hHH
Confidence 344443 345555667776666543322 100001123333322 22345544444 654679999998653222 234
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.|.|...+++.
T Consensus 77 ~i~~~~~~gIpvV~~d~~ 94 (274)
T cd06311 77 PVAKAKKAGIFVVVVDRG 94 (274)
T ss_pred HHHHHHHCCCeEEEEcCC
Confidence 445667889999988864
No 82
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=51.63 E-value=1.5e+02 Score=27.57 Aligned_cols=90 Identities=10% Similarity=0.181 Sum_probs=51.8
Q ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 176 LVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 176 ~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
.+.++++. .+++-.-|.++...+.+...+ ++ ..+.++++--. .++| ..+..+....+|.+|+.+. .++=
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~~~i~~~~~~-~G-----~~~~~~~~~~d--~~~~~~~~~~l~~~~~dgiii~~~-~~~~ 95 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLKDGAQKEADK-LG-----YNLVVLDSQNN--PAKELANVQDLTVRGTKILLINPT-DSDA 95 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHHHHHHHHHHH-cC-----CeEEEecCCCC--HHHHHHHHHHHHHcCCCEEEEcCC-ChHH
Confidence 35788887 445556778888777764332 22 23334443322 3344 3344555467998876543 2221
Q ss_pred hHHHHHHHHHhCCCceeeCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~ 275 (339)
+....+.+++.+.|...+++.
T Consensus 96 ~~~~l~~~~~~~ipvV~~~~~ 116 (295)
T PRK10653 96 VGNAVKMANQANIPVITLDRG 116 (295)
T ss_pred HHHHHHHHHHCCCCEEEEccC
Confidence 124556777788899888764
No 83
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=51.49 E-value=12 Score=35.29 Aligned_cols=56 Identities=20% Similarity=0.123 Sum_probs=41.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH-HHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL-~eia~~~~~~ty~ 271 (339)
-++.+.||-|+...-. +++++|. .+=++..|||+..|+.+..+ .+++++.+.+.+-
T Consensus 41 iel~~~D~~~~p~~a~-~~a~~li-~~~~v~~viG~~~s~~~~a~~~~~~~~~~vp~i~ 97 (312)
T cd06346 41 VTLVTADTQTDPAAGV-AAATKLV-NVDGVPGIVGAACSGVTIAALTSVAVPNGVVMIS 97 (312)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH-hhcCCCEEEccccchhhHhhhhhhhccCCcEEEe
Confidence 4677889988776655 4555665 33345567799999999999 8999888876553
No 84
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=51.47 E-value=2.4e+02 Score=27.50 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=71.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~~la~~~vD~miVVGG~nSSNT 255 (339)
.-|+++.-...+ .-|-+++.-+.....+ .+ .++...+ |.-..++++.+ +.|.+.+||.+|+.| .++|
T Consensus 59 ~~Ig~i~p~~~~-~~~~~i~~gi~~~~~~-~g-----y~~~l~~--~~~~~~~e~~~~~~l~~~~vdGiIi~~--~~~~- 126 (333)
T COG1609 59 KTIGLVVPDITN-PFFAEILKGIEEAARE-AG-----YSLLLAN--TDDDPEKEREYLETLLQKRVDGLILLG--ERPN- 126 (333)
T ss_pred CEEEEEeCCCCC-chHHHHHHHHHHHHHH-cC-----CEEEEEC--CCCCHHHHHHHHHHHHHcCCCEEEEec--CCCC-
Confidence 467777663333 6788888777664222 22 1222222 22233444333 444467899999999 4444
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l 327 (339)
..+++...+.+.|...|.....-....-+.... .++ ++++- .+..|.++||+.+|........+..-.+.
T Consensus 127 ~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~--L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~ 198 (333)
T COG1609 127 DSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEH--LIELGHRRIAFIGGPLDSSASRERLEGYR 198 (333)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHH--HHHCCCceEEEEeCCCccccHhHHHHHHH
Confidence 445556667789999898865511100011111 111 11221 22347899999999863333333333333
No 85
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=51.02 E-value=1e+02 Score=27.40 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCC
Q 019556 189 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP 268 (339)
Q Consensus 189 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ 268 (339)
-..|..+..-+.+.. +.++ ..+.++++-.+...++ +.++.|.+.++|.+|+..+.. .+ ...++.+++.|.|
T Consensus 11 ~~~~~~~~~~i~~~~-~~~g-----~~~~~~~~~~~~~~~~-~~~~~l~~~~vdgiii~~~~~-~~-~~~~~~~~~~~ip 81 (266)
T cd06282 11 NPVFAECVQGIQEEA-RAAG-----YSLLLATTDYDAEREA-DAVETLLRQRVDGLILTVADA-AT-SPALDLLDAERVP 81 (266)
T ss_pred cchHHHHHHHHHHHH-HHCC-----CEEEEeeCCCCHHHHH-HHHHHHHhcCCCEEEEecCCC-Cc-hHHHHHHhhCCCC
Confidence 344555555554432 1222 2344444432332222 445555557899999865542 22 3467788889999
Q ss_pred ceeeCCC
Q 019556 269 SYWIDSE 275 (339)
Q Consensus 269 ty~Ie~~ 275 (339)
...+.+.
T Consensus 82 vV~~~~~ 88 (266)
T cd06282 82 YVLAYND 88 (266)
T ss_pred EEEEecc
Confidence 8777654
No 86
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=50.99 E-value=76 Score=29.92 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=52.2
Q ss_pred EccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHH
Q 019556 183 NQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEI 261 (339)
Q Consensus 183 sQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~ei 261 (339)
..+++.-+-|..+.+.+.+.+.+. + .++.+.++ .....+| +.++.|.++++|.+|+.+.. ++-....++.
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~a~~~-g-----~~v~~~~~--~~~~~~q~~~i~~l~~~~vDgIIi~~~~-~~~~~~~l~~ 74 (302)
T TIGR02634 4 SIDDLRLERWQKDRDIFVAAAESL-G-----AKVFVQSA--NGNEAKQISQIENLIARGVDVLVIIPQN-GQVLSNAVQE 74 (302)
T ss_pred ecCccchhhHHHHHHHHHHHHHhc-C-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhHHHHHHHH
Confidence 456788888888888887643322 2 12332222 2234455 45555556789999998633 2223456667
Q ss_pred HHHhCCCceeeCCCC
Q 019556 262 AEDRGIPSYWIDSEK 276 (339)
Q Consensus 262 a~~~~~~ty~Ie~~~ 276 (339)
+++.+.|...+.+..
T Consensus 75 ~~~~~iPvV~~d~~~ 89 (302)
T TIGR02634 75 AKDEGIKVVAYDRLI 89 (302)
T ss_pred HHHCCCeEEEecCcC
Confidence 788899998887653
No 87
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=50.86 E-value=29 Score=27.82 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=48.1
Q ss_pred EEECCCCCCHHHHHHHHhcC--CcEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHH
Q 019556 59 VVLPAFGAAVEEMVTLNNKN--VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKE 135 (339)
Q Consensus 59 VIIrAHGv~~~~~~~l~~~g--~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e 135 (339)
||+-.--+...+.+.|++.+ +.++|.. +..++++.++|+. ++.|+..++++---.+... +.+++-+.++
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d-------~~~~~~~~~~~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRD-------PERVEELREEGVE-VIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHTTSE-EEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECC-------cHHHHHHHhcccc-cccccchhhhHHhhcCccccCEEEEccCCH
Confidence 44544455677888898877 3446554 6668888899977 6779999999876665543 4566655455
Q ss_pred HHHh
Q 019556 136 AEYV 139 (339)
Q Consensus 136 ~~~~ 139 (339)
..++
T Consensus 74 ~~n~ 77 (116)
T PF02254_consen 74 EENL 77 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 88
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=50.54 E-value=16 Score=34.67 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=37.3
Q ss_pred cccccc-cHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 217 ISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 217 ~~~nTI-C~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
.+.|+- |++..- ..++.+|. .+ .+..|||+.+|+.+.-+..+|++.+.|-..
T Consensus 40 ~~~d~~~~~~~~a-~~~~~~li-~~-~V~aiiG~~~S~~~~av~~~~~~~~vP~Is 92 (327)
T cd06382 40 DIKRVKPDDSFET-TKKVCDLL-QQ-GVAAIFGPSSSEASSIVQSICDAKEIPHIQ 92 (327)
T ss_pred EEEEecCCCcHHH-HHHhhhhh-hc-CcEEEECCCChhHHHHHHHHHhccCCCcee
Confidence 344554 444333 34456665 45 889999999999999999999999887554
No 89
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=50.49 E-value=27 Score=29.19 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=48.4
Q ss_pred eEEecccccCHHHHHHHHHcCC--EEecCCccccccccccCCCEEEECCCC-CCHHHHHHHHhcCCcEEeCCCcchHHHH
Q 019556 17 IWITNEIIHNPTVNKRLEEMAV--QNIPVEEGKKQFDVVNKGDVVVLPAFG-AAVEEMVTLNNKNVQIVDTTCPWVSKVW 93 (339)
Q Consensus 17 Vy~lG~lIHN~~Vv~~L~~~Gv--~~v~~~~~~~~~~~~~~g~~VIIrAHG-v~~~~~~~l~~~g~~iiDaTCP~V~kv~ 93 (339)
|+++++| ++..++.|++ |+ .+.+..+..+-...+++-|.+|.+... +++++++.+ .++++|=..+-=+-++
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~i- 74 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNI- 74 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB-
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCcc-
Confidence 5677777 8999999999 64 333322111111223334566776666 889999988 6888886665544433
Q ss_pred HHHHHHhcCCCeEE
Q 019556 94 TSVEKHKKGDYTSI 107 (339)
Q Consensus 94 ~~~~~~~~~Gy~iI 107 (339)
-...+.+.|-.+.
T Consensus 75 -d~~~a~~~gI~V~ 87 (133)
T PF00389_consen 75 -DLEAAKERGIPVT 87 (133)
T ss_dssp --HHHHHHTTSEEE
T ss_pred -cHHHHhhCeEEEE
Confidence 2334445564443
No 90
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=50.47 E-value=24 Score=37.93 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCCCc
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPS 269 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~~t 269 (339)
..+++++++.+..-.+|.++||||-.|. |..+|.|.+++.|.+.
T Consensus 176 ~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i 220 (568)
T PLN02251 176 PEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKT 220 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCe
Confidence 3466777777765679999999999887 5558999888877433
No 91
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=50.42 E-value=59 Score=30.76 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=44.9
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCCCc
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGASTP 316 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGASTP 316 (339)
+++++.-- -+-.-..++++.|++.+.....+.+++. +. -++| .+.-+|+|++|+..|
T Consensus 86 ~~LViaAT-dD~~vN~~I~~~a~~~~~lvn~vd~p~~-~d-----------------Fi~PAiv~rg~l~IaIST~G~sP 146 (223)
T PRK05562 86 KHLIVIAT-DDEKLNNKIRKHCDRLYKLYIDCSDYKK-GL-----------------CIIPYQRSTKNFVFALNTKGGSP 146 (223)
T ss_pred CcEEEECC-CCHHHHHHHHHHHHHcCCeEEEcCCccc-Ce-----------------EEeeeEEecCCEEEEEECCCcCc
Confidence 55444432 3444456899999998877776666533 32 3343 456799999999988
Q ss_pred HHHHHHHHHHHHhhh
Q 019556 317 DKAVEDVLKKVFEIK 331 (339)
Q Consensus 317 ~~lI~eVi~~l~~~~ 331 (339)
-- -..+-++|+++.
T Consensus 147 ~l-ar~lR~~ie~~l 160 (223)
T PRK05562 147 KT-SVFIGEKVKNFL 160 (223)
T ss_pred HH-HHHHHHHHHHHH
Confidence 53 345666665544
No 92
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=50.03 E-value=1.9e+02 Score=25.83 Aligned_cols=125 Identities=22% Similarity=0.232 Sum_probs=62.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++...+ +-.-|.++.+-+.+.. ++++ .++..+++ ....++|. .++.+.+..+|.+|+.+...+. .
T Consensus 2 igvv~~~~-~~~~~~~~~~gi~~~~-~~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~ 69 (265)
T cd06299 2 IGVIVPDI-RNPYFASLATAIQDAA-SAAG-----YSTIIGNS--DENPETENRYLDNLLSQRVDGIIVVPHEQSA---E 69 (265)
T ss_pred EEEEecCC-CCccHHHHHHHHHHHH-HHcC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh---H
Confidence 45554332 2344566666665532 2222 22333332 22334553 3445555689999998764332 3
Q ss_pred HHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcH
Q 019556 258 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPD 317 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~ 317 (339)
.++-+++.+.|...+.+.-+=....-+.... .++ .+.+. .+..|.++|++..|..+..
T Consensus 70 ~~~~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~--l~~~g~~~I~~i~~~~~~~ 129 (265)
T cd06299 70 QLEDLLKRGIPVVFVDREITGSPIPFVTSDPQPGMTEAVSL--LVALGHKKIGYISGPQDTS 129 (265)
T ss_pred HHHHHHhCCCCEEEEecccCCCCCCEEEECcHHHHHHHHHH--HHHcCCCcEEEEeCCCCcc
Confidence 3566667889998887642111101111111 111 11111 1224678899887765543
No 93
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=49.64 E-value=35 Score=31.55 Aligned_cols=99 Identities=12% Similarity=0.206 Sum_probs=52.0
Q ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+++++.=.... .+.+++..+.+++ ++. ..+.....-+.+...-.+.++.| ..+|+++|-|| ||
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~-----lG~----~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG----~~ 94 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFER-----LGA----REVEVLVIDSREAANDPEVVARL--RDADGIFFTGG----DQ 94 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHH-----cCC----ceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCC----cH
Confidence 478887644433 2333444444433 221 12222333332322333444455 36999999997 67
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAST 315 (339)
.+|.+.-++.+.. + .|. +++.+|.-.+|.+|||..
T Consensus 95 ~~~~~~l~~t~l~--------~-----~l~------------~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 95 LRITSALGGTPLL--------D-----ALR------------KVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHHcCChHH--------H-----HHH------------HHHHcCCEEEEccHHHHh
Confidence 7877766544210 0 011 222257778999999875
No 94
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=49.58 E-value=1.1e+02 Score=28.04 Aligned_cols=82 Identities=9% Similarity=-0.055 Sum_probs=44.0
Q ss_pred HHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCc-cCCCCcchhhh-ccc-hhhhhhcccc--CC
Q 019556 229 RQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR-IGPGNKIAYKL-MHG-ELVEKENWLP--KG 303 (339)
Q Consensus 229 RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~e-l~~~~~~~~~~-~~~-~~~~~~~wl~--~~ 303 (339)
.++++.++...++|.+|+++...+.++ +..+.++.+.|...+..... -..-.-+.... ..+ ++.+ ..+. .|
T Consensus 41 ~~~~~~~~~~~~vdGvIi~~~~~~~~~--~~~~~~~~~~PvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~--~L~~~~~G 116 (247)
T cd06276 41 LFKNIISNTKGKYSGYVVMPHFKNEIQ--YFLLKKIPKEKLLILDHSIPEGGEYSSVAQDFEKAIYNALQ--EGLEKLKK 116 (247)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCcHH--HHHHhccCCCCEEEEcCcCCCCCCCCeEEEccHHHHHHHHH--HHHHHhcC
Confidence 333444333478999999986544433 44555556788999987531 11100011111 111 2222 2233 58
Q ss_pred CcEEEEeecCC
Q 019556 304 QITIGITSGAS 314 (339)
Q Consensus 304 ~~~VGITAGAS 314 (339)
.++||+-+|.+
T Consensus 117 ~~~Ia~i~~~~ 127 (247)
T cd06276 117 YKKLILVFPNK 127 (247)
T ss_pred CCEEEEEecCc
Confidence 99999997754
No 95
>PLN02821 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
Probab=48.79 E-value=1.1e+02 Score=32.26 Aligned_cols=111 Identities=14% Similarity=0.086 Sum_probs=77.7
Q ss_pred cCCcEEeCCCcchHHHHHHHHHHh-cCCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHhhhhhcCCCCCCC
Q 019556 77 KNVQIVDTTCPWVSKVWTSVEKHK-KGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGS 151 (339)
Q Consensus 77 ~g~~iiDaTCP~V~kv~~~~~~~~-~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~ 151 (339)
..+.+.|+-|.-...=|..+.+++ ++-.-+|+||.++-.-+.=+.-.| .+.+.|++++++..- ..|.-..+.|+
T Consensus 336 ~~~~vfnTIC~ATqeRQdA~~~L~~~~vDlmiVVGG~NSSNT~~L~eIa~~~g~~sy~Ie~~~eI~~~-~~i~h~~~~~e 414 (460)
T PLN02821 336 DHFMSFNTICDATQERQDAMYKLVEEKLDLMLVVGGWNSSNTSHLQEIAEHKGIPSYWIDSEERIGPG-NTIAHKLNHGE 414 (460)
T ss_pred ccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHHhCCCEEEECCHHHcCcc-cccccccccch
Confidence 457788999999999999999995 688999999998876666554333 257889999887521 11111222222
Q ss_pred CChHHHHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 152 SSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
....+++++ ....+|||.+=+.-+....++++..|..
T Consensus 415 ~~~~~~wl~-------------~~~~~VGITAGASTPd~lIeeVi~~l~~ 451 (460)
T PLN02821 415 LVEKENWLP-------------EGPVTIGVTSGASTPDKVVEDVLDKVFD 451 (460)
T ss_pred hhhhHHHhc-------------cCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 222223321 0135899999999999999999988875
No 96
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=48.63 E-value=53 Score=31.62 Aligned_cols=97 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccC-CCCcchhhh-ccc
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHG 291 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~-~~~~~~~~~-~~~ 291 (339)
.++.+.||=| +.... +++++|....|| +|||+..|+++.-+.+++.+.+.+.+...+..++. ..+.++... ..-
T Consensus 35 i~l~~~D~~~-~~~a~-~~~~~li~~~V~--~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 110 (336)
T cd06339 35 IELRVYDTAG-AAGAA-AAARQAVAEGAD--IIVGPLLKENVAALAAAAAELGVPVLALNNDESVAAGPNLFYFGLSPED 110 (336)
T ss_pred ceEEEEeCCC-cccHH-HHHHHHHHcCCC--EEEccCCHHHHHHHHhhhccCCCCEEEccCCccccCCCCEEEecCChHH
Confidence 3567889988 55444 455567644454 78999999999888899999988877665554432 111111111 001
Q ss_pred hhhhhhccc-cCCCcEEEEeecCC
Q 019556 292 ELVEKENWL-PKGQITIGITSGAS 314 (339)
Q Consensus 292 ~~~~~~~wl-~~~~~~VGITAGAS 314 (339)
+...--.|+ ..+.++|+|..+.+
T Consensus 111 ~~~~~~~~~~~~g~k~vaii~~~~ 134 (336)
T cd06339 111 EARRAAEYARSQGKRRPLVLAPDG 134 (336)
T ss_pred HHHHHHHHHHhcCccceEEEecCC
Confidence 111112333 12578899887643
No 97
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.56 E-value=1.1e+02 Score=28.09 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=48.2
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
+|+++. ++++-.-|..+..-+.+.+.+ .+ ..+.+.++ +.-.++| +.++.|.+.++|.+|+++...+.. .
T Consensus 2 ~ig~i~-~~~~~~~~~~~~~gi~~~a~~-~g-----y~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~-~ 71 (280)
T cd06315 2 NIIFVA-SDLKNGGILGVGEGVREAAKA-IG-----WNLRILDG--RGSEAGQAAALNQAIALKPDGIVLGGVDAAEL-Q 71 (280)
T ss_pred eEEEEe-cccCCcHHHHHHHHHHHHHHH-cC-----cEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHH-H
Confidence 566665 344445566676666553221 21 12323222 2123344 455555567899999997443322 3
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~ 275 (339)
..++.+++.+.|...+...
T Consensus 72 ~~~~~~~~~~iPvV~~d~~ 90 (280)
T cd06315 72 AELELAQKAGIPVVGWHAG 90 (280)
T ss_pred HHHHHHHHCCCCEEEecCC
Confidence 4445566788898888764
No 98
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=48.46 E-value=33 Score=32.61 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhCCcEEEEEcCC-CCcchHHHHHHHHHhCCCcee
Q 019556 224 DATQERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 224 ~AT~~RQ~a~~~la~~~vD~miVVGG~-nSSNT~rL~eia~~~~~~ty~ 271 (339)
..+.+=+.+++.|. +.+|++++..+. -.++...+.+.|.+.+.|+|-
T Consensus 169 ~~~~~~~~~~~~l~-~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~ 216 (294)
T PF04392_consen 169 PSSEDLEQALEALA-EKVDALYLLPDNLVDSNFEAILQLANEAKIPVFG 216 (294)
T ss_dssp SSGGGHHHHHHHHC-TT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEE
T ss_pred CcHhHHHHHHHHhh-ccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEE
Confidence 33455567888886 789999887652 234555677888777788774
No 99
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=48.32 E-value=20 Score=34.57 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=40.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP 268 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ 268 (339)
-++.+.||-++++.-. +++++|. .+=.+..|+|+..|+.|..+..++++.+.+
T Consensus 41 ielv~~D~~~~p~~a~-~~a~~Li-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~ 93 (348)
T cd06355 41 IEAVVEDGASDWPTFA-EKARKLL-TQDKVAAVFGCWTSASRKAVLPVFERHNGL 93 (348)
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHH-HhCCCcEEEeccchhhHHHHHHHHhccCCc
Confidence 3567889999887665 4555665 333566778999999999999999988654
No 100
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=48.19 E-value=9.1 Score=32.71 Aligned_cols=69 Identities=19% Similarity=0.124 Sum_probs=42.9
Q ss_pred CCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC-CcHHHHHHHHHHHH
Q 019556 250 WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS-TPDKAVEDVLKKVF 328 (339)
Q Consensus 250 ~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS-TP~~lI~eVi~~l~ 328 (339)
...+|+.-|.+..++.|.......-..|=.. .+. ..-..|+ +.+..|=+|.|.| +|+....+++..+.
T Consensus 14 ~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~--~i~--------~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 14 IRDSNGPFLAALLEELGIEVIRYGIVPDDPD--AIK--------EALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp SEBHHHHHHHHHHHHTTEEEEEEEEEESSHH--HHH--------HHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHS
T ss_pred eEEhHHHHHHHHHHHcCCeeeEEEEECCCHH--HHH--------HHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhc
Confidence 5689999999999999876554433332110 111 0113677 4556565555554 78888888888765
Q ss_pred h
Q 019556 329 E 329 (339)
Q Consensus 329 ~ 329 (339)
.
T Consensus 83 ~ 83 (144)
T PF00994_consen 83 G 83 (144)
T ss_dssp S
T ss_pred C
Confidence 4
No 101
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=48.11 E-value=81 Score=30.53 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=53.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccc---cHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|.-.......++.+.+.|++. . .+..++-+ |..... ++.+..+...++|++|-|||=..-
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~----------~~~~~~~~~~~p~~~~v-~~~~~~~~~~~~d~IIaiGGGs~~ 91 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-I----------AVHIFDGVGPNPTFEEV-KEAVERARAAEVDAVIAVGGGSTL 91 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-C----------cEEEeCCcCCCcCHHHH-HHHHHHHHhcCcCEEEEeCCchHH
Confidence 57888876655545566666666541 1 11122211 322222 233333333579999999999999
Q ss_pred chHHHHHHHHHhCCCceeeCCC
Q 019556 254 NTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.+-|.+......+.|-+.|-|-
T Consensus 92 D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 92 DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHhcCCCCEEEEeCC
Confidence 9999887776568888888765
No 102
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=47.85 E-value=15 Score=35.22 Aligned_cols=113 Identities=9% Similarity=0.041 Sum_probs=63.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH-------HHHHHHhCCCceeeCC-CCccCC--CCc
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-------QEIAEDRGIPSYWIDS-EKRIGP--GNK 283 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL-------~eia~~~~~~ty~Ie~-~~el~~--~~~ 283 (339)
-++.+.||-|+.+.-.+. +++|. .+ ++..|||+..|..+..+ ..++...+.+.+..-+ ...+.. ...
T Consensus 41 i~l~~~D~~~~p~~a~~~-a~~lv-~~-~v~aiiG~~~s~~~~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~ 117 (342)
T cd06329 41 IELVEEDNKGSPQEALRK-AQKAI-DD-GVRLVVQGNSSSVALALTEAVRKHNQRNPGKEVLYLNYASVAPALTGEKCSF 117 (342)
T ss_pred EEEEeccCCCChHHHHHH-HHHHH-Hh-CCeEEEcccchHHHHHhhhhhhhhhhhhccCCeEEEecCCCCchhhhccCcc
Confidence 456788999998877654 55555 34 77888999999999998 6666666665554322 222221 011
Q ss_pred chhhhcc---chhhhhhcccc-C-CCcEEEEeecC-CCcHHHHHHHHHHHHh
Q 019556 284 IAYKLMH---GELVEKENWLP-K-GQITIGITSGA-STPDKAVEDVLKKVFE 329 (339)
Q Consensus 284 ~~~~~~~---~~~~~~~~wl~-~-~~~~VGITAGA-STP~~lI~eVi~~l~~ 329 (339)
..+.... -+..--.+|+. . +.++|+|.... +......+.+...+++
T Consensus 118 ~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~ 169 (342)
T cd06329 118 WHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAA 169 (342)
T ss_pred eEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1111100 01111224442 1 36788888643 3445566666666655
No 103
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=47.43 E-value=99 Score=28.05 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=41.0
Q ss_pred ccccHHHH-HHHHHHHHhhhhCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 220 NTICDATQ-ERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 220 nTIC~AT~-~RQ~a~~~la~~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
|..++.+. .||-+ .++ .+-|++|+|-. -+|.|+...++.|+++|.+++-|-+..+
T Consensus 93 ~d~~~~~~~~~~~~--~~~-~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 93 NDFGYDYVFSRYVE--AVG-REGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred ccCCHHHHHHHHHH--HhC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45566554 44443 344 56799998876 4788899999999999999999988754
No 104
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=47.40 E-value=1e+02 Score=28.06 Aligned_cols=87 Identities=8% Similarity=-0.047 Sum_probs=47.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++. ..+.-.-|.++..-+.+.+. ..+ .++.++++-.+...+.| +.++.+.+..+|.+|+.+..... ..
T Consensus 2 Igvi~-~~~~~~f~~~~~~gi~~~a~-~~g-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~-~~- 72 (268)
T cd06306 2 LCVLY-PHLKDAYWLSVNYGMVEEAK-RLG-----VSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDG-LN- 72 (268)
T ss_pred eEEEc-CCCCCHHHHHHHHHHHHHHH-HcC-----CEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhh-HH-
Confidence 44444 23455567777777765433 222 23443332222222334 45666655789999998643222 22
Q ss_pred HHHHHHHhCCCceeeCC
Q 019556 258 LQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~ 274 (339)
.+..+++.|.|...+.+
T Consensus 73 ~~~~~~~~giPvV~~~~ 89 (268)
T cd06306 73 EILQQVAASIPVIALVN 89 (268)
T ss_pred HHHHHHHCCCCEEEecc
Confidence 34456778899887754
No 105
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=47.37 E-value=1.3e+02 Score=26.74 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred CceEEecccccCHHHHHHHHHcC--CEEecCCccccccccccC------CCEEEECCCCCCHHHHHHHHhcCCcEEeCCC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMA--VQNIPVEEGKKQFDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 86 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~G--v~~v~~~~~~~~~~~~~~------g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTC 86 (339)
..|+.+|+++. +.+.+.|++.+ +..|...-+. ...+|. ++.=|.=.||-+..
T Consensus 31 d~iih~GDi~~-~~~~~~l~~~~~~~~~V~GN~D~--~~~lp~~~~~~~~g~~i~l~HG~~~~----------------- 90 (178)
T cd07394 31 QHVLCTGNLCS-KETYDYLKTIAPDVHIVRGDFDE--NLNYPETKVITVGQFKIGLIHGHQVV----------------- 90 (178)
T ss_pred CEEEECCCCCC-HHHHHHHHhhCCceEEEECCCCc--cccCCCcEEEEECCEEEEEEECCcCC-----------------
Confidence 36999999986 88889998854 7777653110 002332 22334456775310
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEecCCCceee
Q 019556 87 PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 118 (339)
Q Consensus 87 P~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~ 118 (339)
|+- .-....+...+.++.+++.|+...|.+.
T Consensus 91 ~~~-~~~~~~~~~~~~~~dvii~GHTH~p~~~ 121 (178)
T cd07394 91 PWG-DPDSLAALQRQLDVDILISGHTHKFEAF 121 (178)
T ss_pred CCC-CHHHHHHHHHhcCCCEEEECCCCcceEE
Confidence 000 0111222233467899999999999876
No 106
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=47.25 E-value=1.7e+02 Score=24.49 Aligned_cols=85 Identities=12% Similarity=0.086 Sum_probs=49.5
Q ss_pred ceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEe----CCCcchHH
Q 019556 16 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD----TTCPWVSK 91 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiD----aTCP~V~k 91 (339)
.+++-|.| +|.-++.|++.|++.|=.. =|+|.. ...+-..++.+.+++.|+..+. ..=+--..
T Consensus 8 ~~~vs~Q~--~~~d~~~la~~GfktVInl--------Rpd~E~---~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~ 74 (110)
T PF04273_consen 8 DLSVSGQP--SPEDLAQLAAQGFKTVINL--------RPDGEE---PGQPSSAEEAAAAEALGLQYVHIPVDGGAITEED 74 (110)
T ss_dssp TEEEECS----HHHHHHHHHCT--EEEE---------S-TTST---TT-T-HHCHHHHHHHCT-EEEE----TTT--HHH
T ss_pred CeEECCCC--CHHHHHHHHHCCCcEEEEC--------CCCCCC---CCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHH
Confidence 57788866 8889999999999987311 011210 1112233477889999999853 34455566
Q ss_pred HHHHHHHHhcCCCeEEEEecCC
Q 019556 92 VWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 92 v~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
+....+-+....+.|+++...+
T Consensus 75 v~~f~~~l~~~~~Pvl~hC~sG 96 (110)
T PF04273_consen 75 VEAFADALESLPKPVLAHCRSG 96 (110)
T ss_dssp HHHHHHHHHTTTTSEEEE-SCS
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 6677777776777899888665
No 107
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=46.97 E-value=93 Score=31.09 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=48.6
Q ss_pred ceEEEEEccCCChH-HHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHH-HHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAM-YKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ~a~-~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|.-..+... .++.+.+.|++ . ..++.+|+.++ +.|.+.=+++ +.+...++|++|-|||=..-
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~-----~-----~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSvi 99 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDE-----A-----GIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPI 99 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHH-----C-----CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 58888887665443 45667666654 1 12345565554 3333332223 22323579999999999999
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|...+.-..
T Consensus 100 D~aKaia~~~~~ 111 (379)
T TIGR02638 100 DTAKAIGIISNN 111 (379)
T ss_pred HHHHHHHHHHhC
Confidence 999887776443
No 108
>PRK10444 UMP phosphatase; Provisional
Probab=46.88 E-value=1.2e+02 Score=28.73 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=22.7
Q ss_pred HhhCCCCceEEecccccCHHHHHHHHHcCCEEec
Q 019556 9 RKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIP 42 (339)
Q Consensus 9 ~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~ 42 (339)
+++.+++++|++|+ +...+.|++.|+...+
T Consensus 77 L~~~~~~~v~~~g~----~~l~~~l~~~g~~~~~ 106 (248)
T PRK10444 77 LRRQEGKKAYVIGE----GALIHELYKAGFTITD 106 (248)
T ss_pred HHhCCCCEEEEEcC----HHHHHHHHHCcCEecC
Confidence 34334557999998 7889999999987553
No 109
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=46.83 E-value=79 Score=30.70 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=41.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
.++.+.||-++.++-+ .++++|. .+=++..|||+..|+++..+..++++.+.+.+
T Consensus 41 ielv~~D~~~~p~~a~-~~a~~li-~~~~V~aiiG~~~s~~~~a~~~~~~~~~~~~~ 95 (360)
T cd06357 41 LEPVEYDPGGDPDAYR-ALAERLL-REDGVRVIFGCYTSSSRKAVLPVVERHDALLW 95 (360)
T ss_pred EEEEEECCCCCHHHHH-HHHHHHH-hhCCCcEEEeCccHHHHHHHHHHHHhcCceEE
Confidence 4677889999887776 5566776 33346666899999999999999998865443
No 110
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=46.68 E-value=2.1e+02 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=46.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++... +...-|..+.+-+.+...+ .+ .++.++++ +...++| +.++.+.+.++|.+|+.+...+ ..
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~ 69 (268)
T cd01575 2 VAVLVPS-LSNSVFADVLQGISDVLEA-AG-----YQLLLGNT--GYSPEREEELLRTLLSRRPAGLILTGLEHT---ER 69 (268)
T ss_pred EEEEeCC-CcchhHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCchhHHHHHHHHHHcCCCEEEEeCCCCC---HH
Confidence 3444433 3344556666655543222 22 22333322 2223444 4455665568999999975432 45
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
..+.+++.+.|...+.+.
T Consensus 70 ~~~~~~~~~ipvv~~~~~ 87 (268)
T cd01575 70 TRQLLRAAGIPVVEIMDL 87 (268)
T ss_pred HHHHHHhcCCCEEEEecC
Confidence 566677788898888654
No 111
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=46.44 E-value=2.2e+02 Score=25.45 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=46.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
++++... +.-.-|..+.+.+.+... +.+ ..+.+.. +....++| +.++.+....+|.+|+.+... +..
T Consensus 2 i~vi~~~-~~~~~~~~~~~~~~~~~~-~~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~~~ 69 (268)
T cd06298 2 VGVIIPD-ITNSYFAELARGIDDIAT-MYK-----YNIILSN--SDNDKEKELKVLNNLLAKQVDGIIFMGGKI---SEE 69 (268)
T ss_pred EEEEECC-CcchHHHHHHHHHHHHHH-HcC-----CeEEEEe--CCCCHHHHHHHHHHHHHhcCCEEEEeCCCC---cHH
Confidence 4455433 344556667666665332 222 1222222 12223455 334455457899999987422 234
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.+.|...+.+.
T Consensus 70 ~~~~l~~~~ipvV~~~~~ 87 (268)
T cd06298 70 HREEFKRSPTPVVLAGSV 87 (268)
T ss_pred HHHHHhcCCCCEEEEccc
Confidence 555666778899888764
No 112
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=46.37 E-value=40 Score=31.07 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=37.1
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.+..|+.- ......+++.+.+ .++|++||||-.-+ .-...|...+++.|.+.+.|.-.
T Consensus 133 ~VV~FgE~-lp~~~~~~a~~~~--~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 133 TIVDFGER-LPPENWMGAAAAA--CRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred cEEECCCC-CCHHHHHHHHHHH--hcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 44555541 1222344444444 47999999998644 33457888899999888877653
No 113
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=46.32 E-value=21 Score=33.57 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.2
Q ss_pred cEEeCCCcchHHHHHHHHHHhcCCCeEEEEe
Q 019556 80 QIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 80 ~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG 110 (339)
.+.|-.|||=+|.|+.+.++.+.|+++.++-
T Consensus 113 vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~ 143 (232)
T PRK10877 113 VFTDITCGYCHKLHEQMKDYNALGITVRYLA 143 (232)
T ss_pred EEECCCChHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3489999999999999999988898888763
No 114
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=46.20 E-value=29 Score=36.98 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCC
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGI 267 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~ 267 (339)
..+++.+++.|-+-.+|.+++|||-.|- +..+|.|.+++.|.
T Consensus 147 ~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~ 189 (539)
T TIGR02477 147 EEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGL 189 (539)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCC
Confidence 4567777777766679999999999987 45588998888773
No 115
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=46.17 E-value=79 Score=31.54 Aligned_cols=79 Identities=15% Similarity=0.301 Sum_probs=45.8
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHHHHhh-hhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAMYKMV-EEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ~a~~~la-~~~vD~miVVGG~nSS 253 (339)
+++.+|+-..... .-++++.+.|++ . ...+.+|+.+- +.|.+-=+.+.+++ ...+|++|-|||-.+-
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~-----~-----~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE-----A-----GIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH-----c-----CCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHH
Confidence 5788887655543 456677777754 1 12244454322 22222222222222 3469999999999999
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|...+.-..
T Consensus 99 D~aK~ia~~~~~ 110 (377)
T cd08176 99 DCAKAIGIVATN 110 (377)
T ss_pred HHHHHHHHHHhC
Confidence 999987765433
No 116
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=45.79 E-value=80 Score=28.38 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=61.8
Q ss_pred CceEEecccccCHHHHHHHHHcCCEE--ecCCcc-cc----ccc-cccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQN--IPVEEG-KK----QFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTC 86 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~--v~~~~~-~~----~~~-~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTC 86 (339)
.++|+.|+ ..-+.|++.|+.. +....+ .+ .+. .+..+..+++|+.+..+...+.|++.|+.|.-..|
T Consensus 74 ~~i~avG~-----~Ta~~l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 148 (231)
T PF02602_consen 74 IKIFAVGP-----KTAEALREYGFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIV 148 (231)
T ss_dssp SEEEESSH-----HHHHHHHHTT-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEEC
T ss_pred CeEEEEcH-----HHHHHHHHcCCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEE
Confidence 57998884 6779999999997 443111 11 122 23333467889999999999999999988743332
Q ss_pred ---cchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccCcEEEEcChHHHHHhh
Q 019556 87 ---PWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIIVKNMKEAEYVC 140 (339)
Q Consensus 87 ---P~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~e~~~~~ 140 (339)
+...........+....+ +.+++-++..++.+.
T Consensus 149 Y~~~~~~~~~~~~~~l~~~~~---------------------~~v~ftS~~~~~~~~ 184 (231)
T PF02602_consen 149 YETPPEELSPELKEALDRGEI---------------------DAVVFTSPSAVRAFL 184 (231)
T ss_dssp EEEEEHHHHHHHHHHHHHTTT---------------------SEEEESSHHHHHHHH
T ss_pred eecccccchHHHHHHHHcCCC---------------------CEEEECCHHHHHHHH
Confidence 333334444444544443 356666777766553
No 117
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=45.75 E-value=4.5 Score=42.13 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.6
Q ss_pred EEEECCCCCCHHHHHHHHhcCCcEEeCCCcchH
Q 019556 58 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 90 (339)
Q Consensus 58 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~ 90 (339)
..-=|||-+|..-..-+...|+.||||||-..+
T Consensus 378 K~trRaHTlPRssrgpa~geGvFVIDATCVVIr 410 (657)
T PF15498_consen 378 KETRRAHTLPRSSRGPARGEGVFVIDATCVVIR 410 (657)
T ss_pred ccccccccCCcccCCCCCCCceEEEeeeEEEEe
Confidence 456799999988888888999999999996543
No 118
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.72 E-value=60 Score=29.77 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCCC
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 315 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 315 (339)
..|++|..-+-..-| .++++.|++ +.....+.+ .+++. -+|| .+.-+||||+|+..
T Consensus 70 ~adlViaaT~d~elN-~~i~~~a~~-~~lvn~~d~-~~~~~-----------------f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 70 DAFLVIAATNDPRVN-EQVKEDLPE-NALFNVITD-AESGN-----------------VVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred CceEEEEcCCCHHHH-HHHHHHHHh-CCcEEECCC-CccCe-----------------EEEeeEEEcCCeEEEEECCCCC
Confidence 467665554444444 678888844 443333222 22332 2333 46679999998888
Q ss_pred cHHHHHHHHHHHHhhhhhh
Q 019556 316 PDKAVEDVLKKVFEIKREE 334 (339)
Q Consensus 316 P~~lI~eVi~~l~~~~~~~ 334 (339)
|- +-..+.+.|+++.+++
T Consensus 130 P~-la~~lr~~ie~~~~~~ 147 (202)
T PRK06718 130 PK-LAKKIRDELEALYDES 147 (202)
T ss_pred hH-HHHHHHHHHHHHcchh
Confidence 84 4466777777655443
No 119
>PLN02884 6-phosphofructokinase
Probab=45.66 E-value=27 Score=35.98 Aligned_cols=45 Identities=11% Similarity=0.297 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhC--CCceee
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I 272 (339)
.+++.++.|-...+|.++||||-.|-.+- +|.+.|++.| .+...|
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGI 178 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGV 178 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEec
Confidence 46777777766789999999999998765 7888888777 455544
No 120
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=44.74 E-value=2e+02 Score=26.74 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=42.8
Q ss_pred CceEEecccccCHHHHHHHHHcCCEEec--CC---ccccc---cccc--cCC-CEEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQNIP--VE---EGKKQ---FDVV--NKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~--~~---~~~~~---~~~~--~~g-~~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
.++|..|+ ..-+.|++.|+...- .. +++-. +... .+| .++++|+.+-.+...+.|+++|..|..
T Consensus 84 ~~~~aVG~-----~Ta~al~~~G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~ 158 (255)
T PRK05752 84 QPWFSVGA-----ATAAILQDYGLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDY 158 (255)
T ss_pred CEEEEECH-----HHHHHHHHcCCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeE
Confidence 47888885 677889999987432 11 11111 1111 133 467999999999999999999977633
No 121
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.66 E-value=35 Score=32.78 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
-++.+.|+=|++..-. +++++|. .+-++..|+|+..|+.+..+..+|.+.+.+.....
T Consensus 44 v~lv~~D~~~~~~~a~-~~~~~li-~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~ 101 (347)
T cd06340 44 LELVFGDSQGNPDIGA-TEAERLI-TEEGVVALVGAYQSAVTLAASQVAERYGVPFVVDG 101 (347)
T ss_pred EEEEEecCCCCHHHHH-HHHHHHh-ccCCceEEecccchHhHHHHHHHHHHhCCCEEecc
Confidence 3455668777665554 4567776 45578888999999999999999999988766543
No 122
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=44.57 E-value=1.1e+02 Score=27.79 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 187 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
++-.-|.++.+.+.+...+ .+ .++.+++ ++...++| +.++.|.+..+|.+|+.+. ++.....+++.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~a~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~~~i~~~~~~ 79 (273)
T cd06309 9 AESPWRTAETKSIKDAAEK-RG-----FDLKFAD--AQQKQENQISAIRSFIAQGVDVIILAPV-VETGWDPVLKEAKAA 79 (273)
T ss_pred CCCHHHHHHHHHHHHHHHh-cC-----CEEEEeC--CCCCHHHHHHHHHHHHHcCCCEEEEcCC-ccccchHHHHHHHHC
Confidence 4445556666666553222 22 2233322 22233444 4555666678999998653 333334566677788
Q ss_pred CCCceeeCCC
Q 019556 266 GIPSYWIDSE 275 (339)
Q Consensus 266 ~~~ty~Ie~~ 275 (339)
+.|...+.+.
T Consensus 80 ~iPvV~~~~~ 89 (273)
T cd06309 80 GIPVILVDRG 89 (273)
T ss_pred CCCEEEEecC
Confidence 8999989875
No 123
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.56 E-value=2.4e+02 Score=25.39 Aligned_cols=81 Identities=11% Similarity=0.216 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch--HHHHHHHH
Q 019556 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT--SHLQEIAE 263 (339)
Q Consensus 187 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT--~rL~eia~ 263 (339)
+...-|..+..-+.+...+ .+ .++.+.+ .+...++| +.++.|.+.++|.+|+.+.-++..+ ...++-+.
T Consensus 9 ~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~ 80 (273)
T cd06292 9 LSNPIFPAFAEAIEAALAQ-YG-----YTVLLCN--TYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLA 80 (273)
T ss_pred CcCchHHHHHHHHHHHHHH-CC-----CEEEEEe--CCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHH
Confidence 3344566666666554332 22 1222221 11233445 4456666678999999985433322 23344456
Q ss_pred HhCCCceeeCCC
Q 019556 264 DRGIPSYWIDSE 275 (339)
Q Consensus 264 ~~~~~ty~Ie~~ 275 (339)
+.+.|...|.+.
T Consensus 81 ~~~ipvV~i~~~ 92 (273)
T cd06292 81 ERGLPVVLVNGR 92 (273)
T ss_pred hCCCCEEEEcCC
Confidence 788999999864
No 124
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=44.37 E-value=37 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCC
Q 019556 229 RQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 229 RQ~a~~~la~~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~ 275 (339)
.+.+.+.+ .++|++||||-.-+-. ...|.+.+++.|.+.+.|.-.
T Consensus 195 ~~~a~~~~--~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~ 240 (260)
T cd01409 195 VVTAAARL--AEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG 240 (260)
T ss_pred HHHHHHHH--hcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC
Confidence 44555555 4699999999876655 468999999999988888653
No 125
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=43.92 E-value=61 Score=29.48 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=30.6
Q ss_pred cCCcEEeCCCcchHH--HHHHHHHHhcCCCeEEEE-ecCCCceeee
Q 019556 77 KNVQIVDTTCPWVSK--VWTSVEKHKKGDYTSIIH-GKYSHEETVA 119 (339)
Q Consensus 77 ~g~~iiDaTCP~V~k--v~~~~~~~~~~Gy~iIIi-G~~~HpEv~g 119 (339)
.++-++++.+||+.. +.+.+..+.+.++.++.. |.++||-..|
T Consensus 89 d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~g~Pv~~~ 134 (233)
T cd02518 89 DVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTSNTLPRTYPDGLD 134 (233)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEecCCCCCCCCceE
Confidence 467789999999984 556676666666666664 4568887555
No 126
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.87 E-value=2.4e+02 Score=25.18 Aligned_cols=88 Identities=14% Similarity=0.216 Sum_probs=48.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|++|.++ ++-.-|.++.+-+++...+ .+ ..+.++.+ .+....+| +.++.|.+.++|.+|+.+...+.. .
T Consensus 2 i~vi~~~-~~~~~~~~~~~gi~~~~~~-~~-----~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~--~ 71 (264)
T cd01574 2 IGVVTTD-LALHGPSSTLAAIESAARE-AG-----YAVTLSML-AEADEEALRAAVRRLLAQRVDGVIVNAPLDDAD--A 71 (264)
T ss_pred EEEEeCC-CCcccHHHHHHHHHHHHHH-CC-----CeEEEEeC-CCCchHHHHHHHHHHHhcCCCEEEEeCCCCChH--H
Confidence 5667754 3335566677666653222 22 11222211 11112344 345556556899999988655444 3
Q ss_pred HHHHHHHhCCCceeeCCCCc
Q 019556 258 LQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~e 277 (339)
+.+ ..+.|.|...+++..+
T Consensus 72 ~~~-~~~~~ipvv~~~~~~~ 90 (264)
T cd01574 72 ALA-AAPADVPVVFVDGSPS 90 (264)
T ss_pred HHH-HHhcCCCEEEEeccCC
Confidence 333 3467889999987643
No 127
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=43.73 E-value=25 Score=34.90 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
.++.+.|+-++...-++ ++++|.. +=.+..|||+..|+.+..+..++++.+.+.+
T Consensus 42 ielv~~D~~~~p~~a~~-~a~~li~-~d~v~~viG~~~S~~~~A~~~~~~~~~~~~i 96 (374)
T TIGR03669 42 IELIDPDPQSDNERYQE-LTRRLLN-RDKVDALWAGYSSATREAIRPIIDRNEQLYF 96 (374)
T ss_pred eEEEEeCCCCCHHHHHH-HHHHHHH-hCCCCEEEcCCchHHHHHHHHHHHhcCceEE
Confidence 46678899998776664 4555552 2246668999999999999999998876654
No 128
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=43.72 E-value=35 Score=33.09 Aligned_cols=56 Identities=13% Similarity=0.216 Sum_probs=40.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.|+-++.++-.+ ++++|. .+=++.+|||+.+|+.+..+.+++++.+.+.+.
T Consensus 43 i~lv~~D~~~~p~~a~~-~a~~li-~~d~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 98 (357)
T cd06337 43 VEIIVRDSQSNPNRAGL-VAQELI-LTDKVDLLLAGGTPDTTNPVSDQCEANGVPCIS 98 (357)
T ss_pred EEEEEecCCCCHHHHHH-HHHHHH-hccCccEEEecCCcchhhHHHHHHHHhCCCeEE
Confidence 35668899998877764 555665 232455667998888888889999999877544
No 129
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=43.38 E-value=31 Score=28.04 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=27.1
Q ss_pred hCCcEEEEEcCCCCcchHHH-HHHHHHhCCCce
Q 019556 239 EKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSY 270 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL-~eia~~~~~~ty 270 (339)
..||.|+..+|+..|..-+| +++|++.|.+.+
T Consensus 58 ~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 58 SDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 37999999999988888776 788888988765
No 130
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=43.14 E-value=27 Score=33.17 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=42.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
-++.+.|+-|+...-. +++++|. .+-.+..|||+..|+.+..+..++++.+.+.+.-
T Consensus 40 v~l~~~D~~~~p~~a~-~~~~~l~-~~~~V~aviG~~~s~~~~a~~~~~~~~~vp~i~~ 96 (334)
T cd06327 40 IELVVADHQNKADVAA-AKAREWI-DRDGVDMIVGGPNSAVALAVQEVAREKKKIYIVT 96 (334)
T ss_pred EEEEEecCCCCchHHH-HHHHHHH-hhcCceEEECCccHHHHHHHHHHHHHhCceEEec
Confidence 3566788888765554 4566676 3345667889999999999999999998776543
No 131
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=43.13 E-value=36 Score=36.87 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhC--CCceee
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~--~~ty~I 272 (339)
.+++++++.+..-.+|.++||||-.|- +..+|+|-+++.+ .++..|
T Consensus 160 e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 160 EQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 356666666655679999999999987 5558999888774 444444
No 132
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=43.07 E-value=74 Score=29.66 Aligned_cols=78 Identities=9% Similarity=-0.037 Sum_probs=42.2
Q ss_pred ecccccCHHHHHHHHHcCCEEecCC-cc---ccccccccCCCEEEECCCCCCHHH-----HHHHHhcCCcEEeCCCcchH
Q 019556 20 TNEIIHNPTVNKRLEEMAVQNIPVE-EG---KKQFDVVNKGDVVVLPAFGAAVEE-----MVTLNNKNVQIVDTTCPWVS 90 (339)
Q Consensus 20 lG~lIHN~~Vv~~L~~~Gv~~v~~~-~~---~~~~~~~~~g~~VIIrAHGv~~~~-----~~~l~~~g~~iiDaTCP~V~ 90 (339)
.++=-.++.+.+.|++.|+..|-.+ .+ .........++.+.+|-||-+... |.. +-..
T Consensus 125 R~~sW~~~~~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~-------------~eL~ 191 (230)
T PF01904_consen 125 RHPSWFTEEVFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSD-------------EELE 191 (230)
T ss_dssp -BGGGGCHHHHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----H-------------HHHH
T ss_pred CCcchhhHHHHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCH-------------HHHH
Confidence 3433338999999999999987432 11 111111112478999999998751 111 2224
Q ss_pred HHHHHHHHHhcCCCeEEEEe
Q 019556 91 KVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 91 kv~~~~~~~~~~Gy~iIIiG 110 (339)
.+-+.++++.++|..|.++=
T Consensus 192 ~~a~~i~~~~~~~~~v~v~f 211 (230)
T PF01904_consen 192 EWAERIRAWAAQGKEVYVFF 211 (230)
T ss_dssp HHHHHHHHHHTCSSEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEE
Confidence 55667777888887766654
No 133
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=43.04 E-value=1.6e+02 Score=27.93 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHhhhhCCcEEEEEcCC--CCcchHHHHHHHHHhCCCce-eeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEE
Q 019556 232 AMYKMVEEKVDLILVVGGW--NSSNTSHLQEIAEDRGIPSY-WIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIG 308 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~--nSSNT~rL~eia~~~~~~ty-~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VG 308 (339)
.+++++..-.|+++|=|+- +..|+..|++..++...|.+ +..+.+-+.+ +..-+-
T Consensus 19 ~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~----------------------~aDa~l 76 (223)
T TIGR01768 19 IAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSR----------------------DADALF 76 (223)
T ss_pred HHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCc----------------------CCCEEE
Confidence 4445553347998765554 45799999999999888875 7777777665 222333
Q ss_pred Eee--cCCCcHHHHHHHHHHHHhh
Q 019556 309 ITS--GASTPDKAVEDVLKKVFEI 330 (339)
Q Consensus 309 ITA--GASTP~~lI~eVi~~l~~~ 330 (339)
+.+ .+..|+|+|..=...+..+
T Consensus 77 ~~svlNs~~~~~iig~~~~~~~~~ 100 (223)
T TIGR01768 77 FPSVLNSDDPYWIIGAQIEAAPKF 100 (223)
T ss_pred EEEeecCCCchHHHhHHHHHHHHH
Confidence 332 4568999999876666554
No 134
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.96 E-value=84 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred hCCcEEEEEcCC-CCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVGG~-nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++-|++|+|... +|.++.++++.|++.|.++.-|.+..
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 467999999864 67789999999999999999998864
No 135
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.88 E-value=35 Score=32.45 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.|+-|....-++ ++++|. .+=.+..|+|+..|+.+.....++++.+.|.+.
T Consensus 41 v~lv~~D~~~~p~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 96 (344)
T cd06348 41 IKLVIEDSGGDEAEAIN-AFQTLI-NKDRVLAIIGPTLSQQAFAADPIAERAGVPVVG 96 (344)
T ss_pred EEEEEecCCCChHHHHH-HHHHHh-hhcCceEEECCCCcHHHHhhhHHHHhCCCCEEe
Confidence 35678899998865555 445565 332467778998888888888999998877654
No 136
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=42.84 E-value=2.5e+02 Score=25.20 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCC
Q 019556 189 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 267 (339)
Q Consensus 189 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~ 267 (339)
-.-|.++.+-+.+...+ .+ ..+.++. ++.-.++|.. +..+.++.+|.+|+.+...+. ..++-+++.|.
T Consensus 11 ~~~~~~~~~g~~~~a~~-~g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~---~~~~~~~~~~i 79 (268)
T cd06270 11 GPFFGPLLSGVESVARK-AG-----KHLIITA--GHHSAEKEREAIEFLLERRCDALILHSKALSD---DELIELAAQVP 79 (268)
T ss_pred CcchHHHHHHHHHHHHH-CC-----CEEEEEe--CCCchHHHHHHHHHHHHcCCCEEEEecCCCCH---HHHHHHhhCCC
Confidence 44566666666554332 22 2233322 2222345533 444556899999999865443 22555667888
Q ss_pred CceeeCCC
Q 019556 268 PSYWIDSE 275 (339)
Q Consensus 268 ~ty~Ie~~ 275 (339)
|...+++.
T Consensus 80 pvV~~~~~ 87 (268)
T cd06270 80 PLVLINRH 87 (268)
T ss_pred CEEEEecc
Confidence 98888764
No 137
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=42.74 E-value=2.9e+02 Score=25.89 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=63.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|..+...+.+...+ .+ ..+.+.++-- ..+++ +.+..|.+..+|.+|+.+.... +.
T Consensus 61 ~~Igvi~~~-~~~~~~~~~~~~i~~~~~~-~g-----y~~~i~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 130 (327)
T TIGR02417 61 RTIGLVIPD-LENYSYARIAKELEQQCRE-AG-----YQLLIACSDD--NPDQEKVVIENLLARQVDALIVASCMPP-ED 130 (327)
T ss_pred ceEEEEeCC-CCCccHHHHHHHHHHHHHH-CC-----CEEEEEeCCC--CHHHHHHHHHHHHHcCCCEEEEeCCCCC-Ch
Confidence 478888753 3344567777766654322 22 2233333322 23344 3444555578999999875331 33
Q ss_pred HHHHHHHHHhCCCceeeCCCC-ccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~-el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAST 315 (339)
..++.+.+.+.|...+.... +..-. -+.... .++ .+.+ .++..|.++||+.+|...
T Consensus 131 -~~~~~l~~~~iPvV~~~~~~~~~~~~-~V~~dn~~~~~~~~~--~L~~~G~~~I~~i~~~~~ 189 (327)
T TIGR02417 131 -AYYQKLQNEGLPVVALDRSLDDEHFC-SVISDDVDAAAELIE--RLLSQHADEFWYLGAQPE 189 (327)
T ss_pred -HHHHHHHhcCCCEEEEccccCCCCCC-EEEeCcHHHHHHHHH--HHHHCCCCeEEEEeCccc
Confidence 33444556788998887642 11110 010001 111 1111 233357889999887543
No 138
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=42.50 E-value=1.1e+02 Score=30.27 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCc----EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHh
Q 019556 68 VEEMVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYV 139 (339)
Q Consensus 68 ~~~~~~l~~~g~~----iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~ 139 (339)
.++.+.|+++.-. .-|.-|.=-.+=|+.++.++.+-.-+|++|.++---..=+...+ .+++.|++++|++.
T Consensus 174 ~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~~aylId~~~ei~~- 252 (294)
T COG0761 174 AEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGKPAYLIDDAEEIDP- 252 (294)
T ss_pred HHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCCCeEEeCChHhCCH-
Confidence 3456677776653 36778888899999999999999999999999865554444333 35899999998752
Q ss_pred hhhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 140 CDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
+. |+ +...+|+.+=..-+-.-.+++++.|+.
T Consensus 253 -----------------~w---~~-----------~~~~VGvTAGAStPd~lV~~Vi~~l~~ 283 (294)
T COG0761 253 -----------------EW---LK-----------GVKTVGVTAGASTPDWLVQEVIAKLRE 283 (294)
T ss_pred -----------------HH---hc-----------CccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11 11 235899999999999999999998886
No 139
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=42.44 E-value=1.8e+02 Score=28.01 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=53.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++. +.+.-.-|..+++-+.+...+ .+ ..+.+.++ +-..++| +.++.|.+.++|.+|+.+...+...
T Consensus 26 ~~Ig~i~-~~~~~~f~~~~~~gi~~~a~~-~g-----~~l~i~~~--~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~ 96 (330)
T PRK10355 26 VKIGMAI-DDLRLERWQKDRDIFVKKAES-LG-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQVLS 96 (330)
T ss_pred ceEEEEe-cCCCchHHHHHHHHHHHHHHH-cC-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHH
Confidence 4677766 667777888888887764322 22 22333322 1123334 3455665679999999864322223
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
..++.+.+.+.|...+++.
T Consensus 97 -~~l~~~~~~~iPvV~id~~ 115 (330)
T PRK10355 97 -NVIKEAKQEGIKVLAYDRM 115 (330)
T ss_pred -HHHHHHHHCCCeEEEECCC
Confidence 4445666888899988774
No 140
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=42.44 E-value=28 Score=34.61 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-.+..|||+..|+-+..+..+|.+.+.+.+.
T Consensus 106 ~~V~aIiGp~~S~~~~av~~i~~~~~vp~is 136 (410)
T cd06363 106 PRVVAVIGPDSSTLALTVAPLFSFFLIPQIS 136 (410)
T ss_pred CCeEEEECCCccHHHHHHHHHhccccccccc
Confidence 4688899999999999999999999877654
No 141
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=42.44 E-value=58 Score=31.56 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=37.6
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~ 275 (339)
++..|+.--... .-+ .+.+.+ .++|++||||..-.-. ...|...|++.|.+.+.|.-.
T Consensus 177 ~VV~FGE~lp~~-~~~-~a~~~~-~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~ 235 (271)
T PTZ00409 177 NVILFGEVIPKS-LLK-QAEKEI-DKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS 235 (271)
T ss_pred cEEEeCCcCCHH-HHH-HHHHHH-HcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC
Confidence 455566544432 223 334454 5799999999854433 347888899999888877643
No 142
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=42.14 E-value=22 Score=25.53 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHHcCCEEecCCccccccccccCCCEEEECCC
Q 019556 29 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAF 64 (339)
Q Consensus 29 Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAH 64 (339)
.++.|+++|+.++.. ++|..+|.|+|
T Consensus 20 Q~~~L~~~Gi~~~~~----------~~G~p~V~r~~ 45 (47)
T PF13986_consen 20 QIRWLRRNGIPFVVR----------ADGRPIVTRSH 45 (47)
T ss_pred HHHHHHHCCCeeEEC----------CCCCEEeeHHH
Confidence 568999999999964 35777888876
No 143
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=41.98 E-value=1.6e+02 Score=25.73 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred hhHHHHHHhhCCCCceEEecc---cccCHHHHHHHHHcCCEEecCCccccccccccCCCEE-EECCCCCCHHHHHH---H
Q 019556 2 AFIAYEARKQFPEEKIWITNE---IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVEEMVT---L 74 (339)
Q Consensus 2 v~~a~~~~~~~~~~~Vy~lG~---lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~V-IIrAHGv~~~~~~~---l 74 (339)
++.+-+.+.+ .++||++|- -.-=.+...+|...|..+.--.+.. ...+.++|.+ +|+-.|-++++.+. +
T Consensus 20 ~~~~~~~l~~--a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~--~~~~~~~Dv~I~iS~sG~t~~~i~~~~~a 95 (179)
T TIGR03127 20 LDKLADKIIK--AKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT--TPSIKKGDLLIAISGSGETESLVTVAKKA 95 (179)
T ss_pred HHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc--cCCCCCCCEEEEEeCCCCcHHHHHHHHHH
Q ss_pred HhcCCcEE
Q 019556 75 NNKNVQIV 82 (339)
Q Consensus 75 ~~~g~~ii 82 (339)
+++|.++|
T Consensus 96 k~~g~~ii 103 (179)
T TIGR03127 96 KEIGATVA 103 (179)
T ss_pred HHCCCeEE
No 144
>PRK09190 hypothetical protein; Provisional
Probab=41.88 E-value=78 Score=29.96 Aligned_cols=85 Identities=11% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHH
Q 019556 186 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAED 264 (339)
Q Consensus 186 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~ 264 (339)
..+.+.++++-..|++++-+..+--.+ .-+.++.....+ ++ |-++++ .++++..--|.||+ +|...|+.
T Consensus 82 ~v~~~l~~~l~~~l~~ril~lLGLArR-----AGklVsG~~~V~-~a---lk~gk~-~Lvi~A~DaS~~t~kKl~~~~~~ 151 (220)
T PRK09190 82 KVPPDLADLVEALLARRALDALGLARK-----AGQVVSGFEKVD-AA---LRSGEA-AALIHASDGAADGKRKLDQARRA 151 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhh-----hCCEeecHHHHH-HH---HHcCCc-eEEEEeccCChhHHHHHHHHHHh
Confidence 345666677766666655444432111 123333332222 22 223455 56667777788887 77778987
Q ss_pred ------hCCCceeeCCCCccCC
Q 019556 265 ------RGIPSYWIDSEKRIGP 280 (339)
Q Consensus 265 ------~~~~ty~Ie~~~el~~ 280 (339)
++.|.+..-+.+||..
T Consensus 152 ~~~~~~~~Vp~v~~~tk~eLg~ 173 (220)
T PRK09190 152 LVHETGREIPVIGLFTAAELGL 173 (220)
T ss_pred hcccccCCccEEEecCHHHHHH
Confidence 7788887888888764
No 145
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=41.72 E-value=43 Score=31.85 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=40.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
++.+.|+-|+...-. +++++|... .|+ .|||...|+.+..+.+++++.+.|.+...+.
T Consensus 42 ~~~~~D~~~~~~~a~-~~a~~li~~~~v~--aiig~~~s~~~~~~~~~~~~~~ip~i~~~s~ 100 (346)
T cd06330 42 ELVVRDEAGKPDEAI-REARELVENEGVD--MLIGLISSGVALAVAPVAEELKVFFIATDPG 100 (346)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHhccCCc--EEEcccchHHHHHHHHHHHHcCCeEEEcCCC
Confidence 456778866654444 445555432 455 4468899999999999999998887665443
No 146
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.60 E-value=1.7e+02 Score=27.50 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++. ..+...-|..+.+-|.+...+. + ..-.+.++++ +....+|.+ +..|....+|.+|+.+. ++.....
T Consensus 2 Igviv-~~~~~~~~~~~~~gi~~~a~~~-~---~g~~~~~~~~--~~~~~~q~~~i~~l~~~~vdgiii~~~-~~~~~~~ 73 (303)
T cd01539 2 IGVFL-YKFDDTFISLVRKNLEDIQKEN-G---GKVEFTFYDA--KNNQSTQNEQIDTALAKGVDLLAVNLV-DPTAAQT 73 (303)
T ss_pred eEEEe-eCCCChHHHHHHHHHHHHHHhh-C---CCeeEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEecC-chhhHHH
Confidence 44443 2345555677776666532221 0 0112333332 345567755 44555678999998764 3333355
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.|.|...+++.
T Consensus 74 ~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 74 VINKAKQKNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHCCCCEEEeCCC
Confidence 666677888998888764
No 147
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.58 E-value=2e+02 Score=26.11 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=47.1
Q ss_pred eEEEEEcc-CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 178 KVGIANQT-TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 178 ~v~vvsQT-T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
||+++.-. +++-.-|..+..-+.+...+ .+ .++.+.++- +. ++| +.++.|.+..+|.+|+++.. .+
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~-~g-----y~~~~~~~~-~~--~~~~~~~~~l~~~~vdgiii~~~~---~~ 68 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKE-LG-----VEVKYVESV-ED--ADYEPNLRQLAAQGYDLIFGVGFG---FM 68 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHh-cC-----ceEEEEecC-CH--HHHHHHHHHHHHcCCCEEEECCcc---hh
Confidence 35555542 45556677777777654222 22 234443332 32 344 34455655679999997422 23
Q ss_pred HHHHHHHHHh-CCCceeeCCC
Q 019556 256 SHLQEIAEDR-GIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~-~~~ty~Ie~~ 275 (339)
..+.+..++. +.|...+++.
T Consensus 69 ~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 69 DAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHHCCCCEEEEecCc
Confidence 4555666543 5677777764
No 148
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=41.40 E-value=1.5e+02 Score=27.73 Aligned_cols=87 Identities=11% Similarity=-0.007 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCc-eeeCCCCccCCCCcchhhhccchh----hhhhcc
Q 019556 225 ATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS-YWIDSEKRIGPGNKIAYKLMHGEL----VEKENW 299 (339)
Q Consensus 225 AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~t-y~Ie~~~el~~~~~~~~~~~~~~~----~~~~~w 299 (339)
.+.+-++.+++++.+.+|++|..|...+. -+.++|++. |++ |.+-+.. ....+...+.....|. ---..+
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~~g~~~~~---~~~~vA~~~-p~~~F~~~d~~-~~~~Nv~~~~~~~~e~~ylaG~~Aa~ 116 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFGTSFGFMD---AALKVAKEY-PDVKFEHCSGY-KTAPNVGSYFARIYEGRYLAGVVAGK 116 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEECchhhhH---HHHHHHHHC-CCCEEEECCCC-CCCCCeeeEechhhHHHHHHHHHHHH
Confidence 45677788899986679999997765554 556688777 555 4442221 1211222111000010 000123
Q ss_pred ccCCCcEEEEeecCCCcH
Q 019556 300 LPKGQITIGITSGASTPD 317 (339)
Q Consensus 300 l~~~~~~VGITAGASTP~ 317 (339)
+ .+..+||+.+|...|.
T Consensus 117 ~-t~t~kVG~I~g~~~~~ 133 (258)
T cd06353 117 M-TKTNKVGYVAAFPIPE 133 (258)
T ss_pred h-hcCCcEEEEcCcccHH
Confidence 3 3467999999987774
No 149
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=41.21 E-value=2.6e+02 Score=25.82 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=50.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++.. .++-.-|..+..-+.+...+ . +.++.+.++-.+. ++| +.++.+.+..+|.+|+.+...++ ...
T Consensus 2 I~vi~~-~~~~~~~~~~~~gi~~~a~~-~-----g~~~~~~~~~~~~--~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~ 71 (288)
T cd01538 2 IGLSLP-TKTEERWIRDRPNFEAALKE-L-----GAEVIVQNANGDP--AKQISQIENMIAKGVDVLVIAPVDGEA-LAS 71 (288)
T ss_pred eEEEEe-CCCcHHHHHHHHHHHHHHHH-c-----CCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEecCChhh-HHH
Confidence 455553 34556677777766654332 2 2335555554333 344 44444545789999988643222 244
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++.+++.+.|...++..
T Consensus 72 ~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 72 AVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHCCCCEEEECCC
Confidence 556677788998888764
No 150
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=40.97 E-value=1.6e+02 Score=27.92 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=60.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC-ccC-CCCcchhhh-c
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK-RIG-PGNKIAYKL-M 289 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~-el~-~~~~~~~~~-~ 289 (339)
.++.+.||-++....++. +++|... +||+ |||...|+++.-+ +++.+.+.+.....+.. .+. ....+.... -
T Consensus 41 i~lv~~D~~~~~~~~~~~-~~~li~~~~V~~--iig~~~s~~~~~~-~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~ 116 (341)
T cd06341 41 IEYVWCDDQGDPASAAAC-ARDLVEDDKVVA--VVGGSSGAGGSAL-PYLAGAGIPVIGGAGTSAWELTSPNSFPFSGGT 116 (341)
T ss_pred EEEEEecCCCChhHHHHH-HHHHHHhcCceE--EEecccccchhHH-HHHhhcCCceecCCCCCchhhcCCCeEEecCCC
Confidence 357788999988777654 5566533 4554 4666656665544 88888888877766543 232 111121111 1
Q ss_pred cchhhhhhcccc-CCCcEEEEeecCC--CcHHHHHHHHHHHHh
Q 019556 290 HGELVEKENWLP-KGQITIGITSGAS--TPDKAVEDVLKKVFE 329 (339)
Q Consensus 290 ~~~~~~~~~wl~-~~~~~VGITAGAS--TP~~lI~eVi~~l~~ 329 (339)
..+...-.+|+. .+.+++++..... ......+...+.+++
T Consensus 117 ~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~ 159 (341)
T cd06341 117 PASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSLAA 159 (341)
T ss_pred cchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 111222224442 2467888775433 334455555555554
No 151
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.92 E-value=1.2e+02 Score=30.40 Aligned_cols=89 Identities=6% Similarity=-0.031 Sum_probs=55.0
Q ss_pred CceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCc------c
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP------W 88 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP------~ 88 (339)
.+|.+.|....|+.+.+.+++.|..+|-+. .-.|..-...-=--+...++.+.++-+..+-++|. .
T Consensus 230 ~ril~tG~~~~~~~i~~~iE~~G~~VV~~e--------~c~g~r~~~~~v~~~~dpl~alA~~yl~~~~C~~~~~p~~~R 301 (377)
T TIGR03190 230 ARFMTIGSENDDIAFMAMVESVGATIVIDD--------QCSGTRYFWNASKPEDDVIKAIAERYCDRPACPTKDYPVHTR 301 (377)
T ss_pred eEEEEECCCCCcHHHHHHHHHCCCEEEEEC--------CCcccccccccCCCCccHHHHHHHHhcCCCCCCCcCCCHHHH
Confidence 368889999999989999999999998532 11121110000001223467666666766667773 2
Q ss_pred hHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 89 VSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 89 V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
...+.+.++++.-+| ||.+..+.
T Consensus 302 ~~~i~~lv~~~~~DG--VI~~~~kf 324 (377)
T TIGR03190 302 YDHVLGLAKEYNVQG--AIFLQQKF 324 (377)
T ss_pred HHHHHHHHHHhCCCE--EEEecccC
Confidence 555667778887777 55555443
No 152
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=40.90 E-value=2e+02 Score=26.84 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=49.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
|+++.- +++-.-|..+.+.+.+...+ ++- .+.+ .+ ++...+.| +.++.+.+.++|.+|+.+ .+++...
T Consensus 2 I~vi~~-~~~~~f~~~i~~gi~~~a~~-~g~-----~v~~~~~--~~~d~~~~~~~i~~~~~~~~DgiIi~~-~~~~~~~ 71 (298)
T cd06302 2 IAFVPK-VTGIPYFNRMEEGAKEAAKE-LGV-----DAIYVGP--TTADAAGQVQIIEDLIAQGVDAIAVVP-NDPDALE 71 (298)
T ss_pred EEEEEc-CCCChHHHHHHHHHHHHHHH-hCC-----eEEEECC--CCCCHHHHHHHHHHHHhcCCCEEEEec-CCHHHHH
Confidence 455543 34455677777777664332 321 1221 11 12223444 444455446899999985 4445445
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~ 275 (339)
.+++.+++.+.|...+.+.
T Consensus 72 ~~~~~~~~~~iPvV~v~~~ 90 (298)
T cd06302 72 PVLKKAREAGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHCCCeEEEEcCC
Confidence 6666777888998888764
No 153
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=40.81 E-value=2.1e+02 Score=28.96 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccC-CCEEEECCCCCCHH--HHHHHHhcCCc
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--EMVTLNNKNVQ 80 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~-g~~VIIrAHGv~~~--~~~~l~~~g~~ 80 (339)
+|.-+.+. +-.|+ .-+.-.++...+.|+++|+.+..... -+.+.+ -| +||.+=||+|. .++.++++|+.
T Consensus 15 la~~l~~~--G~~V~-~~D~~~~~~~~~~l~~~gi~~~~~~~----~~~~~~~~d-~vV~SpgI~~~~~~~~~a~~~~i~ 86 (448)
T TIGR01081 15 LAMIAKQL--GHEVT-GSDANVYPPMSTQLEAQGIEIIEGFD----AAQLEPKPD-LVVIGNAMKRGNPCVEAVLNLNLP 86 (448)
T ss_pred HHHHHHhC--CCEEE-EECCCCCcHHHHHHHHCCCEEeCCCC----HHHCCCCCC-EEEECCCCCCCCHHHHHHHHCCCC
Confidence 44444443 33443 34444566566679999998864321 122222 34 66778899876 67888888987
Q ss_pred EE
Q 019556 81 IV 82 (339)
Q Consensus 81 ii 82 (339)
|+
T Consensus 87 v~ 88 (448)
T TIGR01081 87 YT 88 (448)
T ss_pred EE
Confidence 75
No 154
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=40.37 E-value=1.9e+02 Score=28.83 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=46.4
Q ss_pred ceEEEEEccCCChH-HHHHHHHHHHHHHhhhcccccccccccccccc---cHHHHHHHHHHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~a~~~la~~~vD~miVVGG~nS 252 (339)
+++.+|....+... .++.+.+.|++. ..++.+|+.+ |.-...++ +++.+....+|++|-|||-.+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~-~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGA----------GIEYAVYDGVPPDPTIENVEA-GLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhc----------CCeEEEeCCCCCCcCHHHHHH-HHHHHHhcCCCEEEEeCCccH
Confidence 58888876654332 456776666541 1224445444 32222222 222222357999999999999
Q ss_pred cchHHHHHHHHHh
Q 019556 253 SNTSHLQEIAEDR 265 (339)
Q Consensus 253 SNT~rL~eia~~~ 265 (339)
-.+-|..-+.-..
T Consensus 96 ~D~aK~ia~~~~~ 108 (374)
T cd08189 96 IDCAKAIAARAAN 108 (374)
T ss_pred HHHHHHHHHHHhC
Confidence 9999987666443
No 155
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=40.21 E-value=55 Score=30.19 Aligned_cols=43 Identities=33% Similarity=0.398 Sum_probs=28.1
Q ss_pred HHHHHhhhhCCcEEEEEcCC-CCcchHHHHHHHHHhCCCceeeCCC
Q 019556 231 DAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~-nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.+...+ .+.|++||||-. .-.-+.+|.+.++..+.+.+.|.-.
T Consensus 157 ~~~~~~--~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~ 200 (224)
T cd01412 157 EAVEAL--AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPE 200 (224)
T ss_pred HHHHHH--HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCC
Confidence 344444 479999999921 1134558888887777777766544
No 156
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=40.14 E-value=90 Score=29.10 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=46.1
Q ss_pred EEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHHH
Q 019556 243 LILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 243 ~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~ 321 (339)
+.+||-. -++.=-.++++.|++++.+.+-+++++. +. .+. -.+++.+.-.|+||+|+-.|- +-.
T Consensus 73 ~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~-~~--f~~-----------Pa~~~r~~l~iaIsT~G~sP~-la~ 137 (210)
T COG1648 73 AFLVIAATDDEELNERIAKAARERRILVNVVDDPEL-CD--FIF-----------PAIVDRGPLQIAISTGGKSPV-LAR 137 (210)
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc-Cc--eec-----------ceeeccCCeEEEEECCCCChH-HHH
Confidence 4444333 3334446899999999999998888874 21 000 045545778999999998774 344
Q ss_pred HHHHHHHhh
Q 019556 322 DVLKKVFEI 330 (339)
Q Consensus 322 eVi~~l~~~ 330 (339)
.+.++++++
T Consensus 138 ~ir~~Ie~~ 146 (210)
T COG1648 138 LLREKIEAL 146 (210)
T ss_pred HHHHHHHHH
Confidence 444444444
No 157
>PTZ00287 6-phosphofructokinase; Provisional
Probab=39.81 E-value=41 Score=39.81 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCCCc
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPS 269 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~~t 269 (339)
...|+++++.+-.-.+|.+|||||-.|- +...|.|.+++.|.++
T Consensus 914 ~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i 958 (1419)
T PTZ00287 914 KENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKKIPT 958 (1419)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCc
Confidence 4567888877766689999999998887 5668999888888773
No 158
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=39.65 E-value=37 Score=29.29 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcC
Q 019556 55 KGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 102 (339)
Q Consensus 55 ~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~ 102 (339)
+.+.+||+|||+|....+ +| -||...+.+.++...++
T Consensus 17 ~~~~llfsaHgiP~~~~~----~g-------d~Y~~~~~~~~~~v~~~ 53 (135)
T cd00419 17 EKDRLLFSAHGLPVRDIK----KG-------DPYPDQCEETARLVAER 53 (135)
T ss_pred CCCEEEEEcCCCHHHHhh----CC-------CCHHHHHHHHHHHHHHH
Confidence 356799999999987665 22 47888888877777653
No 159
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=39.62 E-value=3.2e+02 Score=25.53 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=63.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|.++...+.+...+ .+ .++.+.+ +....++|.. ++.|.+..+|.+|++|... +
T Consensus 60 ~~Igvv~~~-~~~~f~~~l~~~i~~~~~~-~g-----~~~~i~~--~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~---~ 127 (329)
T TIGR01481 60 TTVGVIIPD-ISNIYYAELARGIEDIATM-YK-----YNIILSN--SDEDPEKEVQVLNTLLSKQVDGIIFMGGTI---T 127 (329)
T ss_pred CEEEEEeCC-CCchhHHHHHHHHHHHHHH-cC-----CEEEEEe--CCCCHHHHHHHHHHHHhCCCCEEEEeCCCC---C
Confidence 478888764 3445577777766653222 22 1222221 1222344433 3445457899999987532 2
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAS 314 (339)
..+.+..++.+.|...+.+..+-....-+.... .++ .+.+ ..+..|.++||+.+|.+
T Consensus 128 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~--~L~~~G~~~I~~i~g~~ 186 (329)
T TIGR01481 128 EKLREEFSRSPVPVVLAGTVDKENELPSVNIDYKQATKEAVG--ELIAKGHKSIAFVGGPL 186 (329)
T ss_pred hHHHHHHHhcCCCEEEEecCCCCCCCCEEEECcHHHHHHHHH--HHHHCCCCeEEEEecCc
Confidence 345555667788998887643211100011001 111 1111 12335788999988754
No 160
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=39.60 E-value=57 Score=24.80 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=29.3
Q ss_pred HHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhcCCCe-EEEEecCC
Q 019556 70 EMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 113 (339)
Q Consensus 70 ~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~-iIIiG~~~ 113 (339)
+.+.|++.|+.+ +|-.. .++.+..+...+.||. ++++|+..
T Consensus 23 ~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e 65 (94)
T cd00738 23 LLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDE 65 (94)
T ss_pred HHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCCh
Confidence 567788888877 55543 5777777777788865 78888654
No 161
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=39.52 E-value=1.8e+02 Score=26.53 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 228 ERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 228 ~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
++| +.++.+...++|.+|+.+.- +.-...+++.+++.+.|...+.+.
T Consensus 41 ~~~~~~i~~~~~~~~dgiii~~~~-~~~~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 41 EKVLSAIDNLGAQGAKGFVICVPD-VKLGPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEccCc-hhhhHHHHHHHHhCCCeEEEecCC
Confidence 444 45555655679999998743 333356677787899998888753
No 162
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=39.46 E-value=48 Score=31.39 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=39.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.++..|+.-=+ ....+++.+.+ .++|++||||-.-+ .-...|...|+..|.+.+.|..
T Consensus 155 P~Vv~FgE~~p-~~~~~~~~~~~--~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~ 213 (244)
T PRK14138 155 PNIVFFGEALP-QDALREAIRLS--SKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL 213 (244)
T ss_pred CCEEECCCcCC-HHHHHHHHHHH--hcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC
Confidence 45666666322 22344444444 47999999998633 5566888899999988887765
No 163
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=39.44 E-value=35 Score=32.57 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=41.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.||-|+...-.+ ++++|. .+-.+..|||+..|+.+..+..++.+.+.|..-
T Consensus 40 i~~~~~D~~~~~~~a~~-~a~~l~-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~ 95 (350)
T cd06366 40 LVLHVRDSKCDPVQAAS-AALDLL-ENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLS 95 (350)
T ss_pred EEEEecCCCCCHHHHHH-HHHHHh-ccCCceEEECCCcHHHHHHHHHHhhcCCeeEEe
Confidence 45678899888865544 455565 334577788999999999999999998877543
No 164
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=39.28 E-value=44 Score=35.77 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCC
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGI 267 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~ 267 (339)
.+++.+++.|..-.+|.+++|||-.|- +..+|++-+++.|.
T Consensus 153 e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~ 194 (550)
T cd00765 153 DQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGL 194 (550)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCC
Confidence 455666666655679999999998886 45589998888773
No 165
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.28 E-value=2.8e+02 Score=24.72 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=30.6
Q ss_pred HHHHHHHHhh-hhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 228 ERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 228 ~RQ~a~~~la-~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
+.++.+.++. ++++|.+|+.++..+ ...++.+++.|.|...+++..
T Consensus 47 ~~~~~~~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~ 93 (270)
T cd06294 47 ELLEEVKKMIQQKRVDGFILLYSRED---DPIIDYLKEEKFPFVVIGKPE 93 (270)
T ss_pred HHHHHHHHHHHHcCcCEEEEecCcCC---cHHHHHHHhcCCCEEEECCCC
Confidence 4445666643 346999999865332 344566678889998888754
No 166
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=38.89 E-value=55 Score=27.48 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=31.2
Q ss_pred HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCc
Q 019556 231 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS 269 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~t 269 (339)
++.+-|. .++=-.|.|-.....++.||..+|++.|.+.
T Consensus 46 EaTRvLL-RRvP~~vLVr~~~~pd~~Hl~~LA~ekgVpV 83 (100)
T PF15608_consen 46 EATRVLL-RRVPWKVLVRDPDDPDLAHLLLLAEEKGVPV 83 (100)
T ss_pred HHHHHHH-hcCCCEEEECCCCCccHHHHHHHHHHcCCcE
Confidence 3445576 5777788888999999999999999999764
No 167
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.84 E-value=66 Score=31.15 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeC--------CCcchHHHHHHHHHHh
Q 019556 29 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDT--------TCPWVSKVWTSVEKHK 100 (339)
Q Consensus 29 Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDa--------TCP~V~kv~~~~~~~~ 100 (339)
+++.|+++|+-|+| +|. .++-+++..-++. |+.++++ |--.|.|=-+.+.+++
T Consensus 143 ~m~~Lk~r~l~flD------------s~T----~a~S~a~~iAk~~---gVp~~~rdvfLD~e~~~~~V~kql~~~~~~A 203 (250)
T COG2861 143 LMEALKERGLYFLD------------SGT----IANSLAGKIAKEI---GVPVIKRDVFLDDEDTEAAVLKQLDAAEKLA 203 (250)
T ss_pred HHHHHHHCCeEEEc------------ccc----cccchhhhhHhhc---CCceeeeeeeecCcCCHHHHHHHHHHHHHHH
Q ss_pred cCCCeEEEEecCCCcee
Q 019556 101 KGDYTSIIHGKYSHEET 117 (339)
Q Consensus 101 ~~Gy~iIIiG~~~HpEv 117 (339)
++.-+.|-||+. |+++
T Consensus 204 rk~G~ai~IGh~-~~~T 219 (250)
T COG2861 204 RKNGSAIGIGHP-HKNT 219 (250)
T ss_pred HhcCceEEecCC-chhH
No 168
>PRK06683 hypothetical protein; Provisional
Probab=38.74 E-value=40 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.2
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++||-.+-...-+.++.+.|+..+.|.+++.|..||-.
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~ 67 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGK 67 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHHHHH
Confidence 455555555544444444668999999999999999988854
No 169
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.17 E-value=1.5e+02 Score=29.57 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=45.7
Q ss_pred ceEEEEE-ccCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccH-HHHHHH-HHHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIAN-QTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICD-ATQERQ-DAMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvs-QTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~-AT~~RQ-~a~~~la~~~vD~miVVGG~nS 252 (339)
+++.+|+ ++++.. ..++.+.+.|+. . ..++.+|+.++. .|.+.= ++++.+-+..+|++|-|||-..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~-----~-----g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKE-----A-----GIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHH-----c-----CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 4777775 344432 345666666654 1 123455666663 222222 2333332357999999999999
Q ss_pred cchHHHHHHHH
Q 019556 253 SNTSHLQEIAE 263 (339)
Q Consensus 253 SNT~rL~eia~ 263 (339)
-.+-|..-+..
T Consensus 99 iD~aK~ia~~~ 109 (382)
T cd08187 99 IDSAKAIAAGA 109 (382)
T ss_pred HHHHHHHHhHh
Confidence 99999876653
No 170
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=38.07 E-value=74 Score=29.74 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.|++||+++...|-|...+..|.+.|.+.|-+...
T Consensus 156 s~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~ 190 (220)
T TIGR00732 156 SRAVLVVEAPLKSGALITARYALEQGREVFAYPGD 190 (220)
T ss_pred cCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCC
Confidence 58999999999999999999999999999998654
No 171
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=38.05 E-value=2.3e+02 Score=25.97 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh-
Q 019556 187 MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR- 265 (339)
Q Consensus 187 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~- 265 (339)
.+..-|.++++-+.+...+ ++ .++.+.++- +. ...++.++.|....+|.+|+.+.. ++..+.++.+..
T Consensus 12 ~~~~f~~~~~~gi~~~~~~-~g-----y~~~i~~~~-~~-~~~~~~i~~l~~~~vdgiI~~~~~---~~~~~~~~~~~~~ 80 (265)
T cd06354 12 GDKSFNQSAWEGLERAAKE-LG-----IEYKYVESK-SD-ADYEPNLEQLADAGYDLIVGVGFL---LADALKEVAKQYP 80 (265)
T ss_pred CchhHHHHHHHHHHHHHHH-cC-----CeEEEEecC-CH-HHHHHHHHHHHhCCCCEEEEcCcc---hHHHHHHHHHHCC
Confidence 4455677777776653222 22 223333332 22 334566777776799999998743 234555666554
Q ss_pred CCCceeeCCCCcc-CCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCC
Q 019556 266 GIPSYWIDSEKRI-GPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 266 ~~~ty~Ie~~~el-~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAST 315 (339)
+.|...+++..+- +...-+.+.. ..+ .+..-.... .|.++||+-+|...
T Consensus 81 ~~PiV~i~~~~~~~~~~~~v~~d~~~a~~~a~~ll~~~-~G~~~I~~i~~~~~ 132 (265)
T cd06354 81 DQKFAIIDAVVDDPPNVASIVFKEEEGSFLAGYLAALM-TKTGKVGFIGGMDI 132 (265)
T ss_pred CCEEEEEecccCCCCcEEEEEecchhHHHHHHHHHHhh-cCCCeEEEEecccC
Confidence 6788888764332 2111111111 111 111111111 28899999987543
No 172
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=38.04 E-value=2.1e+02 Score=25.84 Aligned_cols=86 Identities=15% Similarity=0.012 Sum_probs=45.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|++|.-. +-.-|.++..-+..... +.+ .++.++.+ .+...++|. .++.|.+..+|.+|+.+...++ +..
T Consensus 2 i~~v~~~--~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~-~~~ 71 (271)
T cd06314 2 IAVVTNG--ASPFWKIAEAGVKAAGK-ELG-----VDVEFVVP-QQGTVNAQLRMLEDLIAEGVDGIAISPIDPKA-VIP 71 (271)
T ss_pred eEEEcCC--CcHHHHHHHHHHHHHHH-HcC-----CeEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCChhH-hHH
Confidence 5666632 34557777776655322 222 22333211 012344553 3445555789999998643222 234
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++-+.+ +.|+..+.+.
T Consensus 72 ~l~~~~~-~ipvV~~~~~ 88 (271)
T cd06314 72 ALNKAAA-GIKLITTDSD 88 (271)
T ss_pred HHHHHhc-CCCEEEecCC
Confidence 4444445 8899998764
No 173
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=37.96 E-value=36 Score=33.03 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=40.0
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIP 268 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ 268 (339)
-++.+.||-|+.+.-. +++++|. .+=.+.+|||+..|+.+..+..++.+.+..
T Consensus 42 i~l~~~Dd~~~p~~a~-~~a~~Lv-~~~~V~~iiG~~~S~~~~a~~~~~~~~~~~ 94 (359)
T TIGR03407 42 IEPVVEDGASDWPTFA-EKARKLI-TQDKVAAVFGCWTSASRKAVLPVFEENNGL 94 (359)
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHH-hhCCCcEEEcCCcHHHHHHHHHHHhccCCc
Confidence 4567889999887766 5566675 333466778999999999999999887643
No 174
>PRK05569 flavodoxin; Provisional
Probab=37.92 E-value=1.1e+02 Score=25.64 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=15.8
Q ss_pred EEEEEcCCCCcchHHHHHHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAED 264 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~ 264 (339)
++||-++ .+.||.++++...+
T Consensus 4 i~iiY~S-~tGnT~~iA~~i~~ 24 (141)
T PRK05569 4 VSIIYWS-CGGNVEVLANTIAD 24 (141)
T ss_pred EEEEEEC-CCCHHHHHHHHHHH
Confidence 4566666 59999999887655
No 175
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=37.76 E-value=1.8e+02 Score=26.70 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=24.7
Q ss_pred HHHHHH-HHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 227 QERQDA-MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 227 ~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.++|.. ++.|.+..+|.+|+.++.. ++...|.+ +.+.+.+...+
T Consensus 46 ~~~~~~~i~~l~~~~vDgiIv~~~~~-~~~~~~~~-l~~~~~p~V~i 90 (280)
T cd06303 46 HRLQSQQLNEALQSKPDYLIFTLDSL-RHRKLIER-VLASGKTKIIL 90 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCch-hhHHHHHH-HHhCCCCeEEE
Confidence 455644 4455557899999987532 23344444 44555454444
No 176
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.73 E-value=62 Score=26.96 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=16.7
Q ss_pred EEECCCCCCHHHHHHHHhcCCcEEeCCCcch
Q 019556 59 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 89 (339)
Q Consensus 59 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V 89 (339)
|+|-+....++..+.+++.|++++---|..|
T Consensus 83 v~~~~g~~~~~~~~~a~~~gi~vigp~C~gv 113 (116)
T PF13380_consen 83 VWLQPGAESEELIEAAREAGIRVIGPNCLGV 113 (116)
T ss_dssp EEE-TTS--HHHHHHHHHTT-EEEESS-HHH
T ss_pred EEEEcchHHHHHHHHHHHcCCEEEeCCcceE
Confidence 3333336667777777777777777777654
No 177
>PRK02287 hypothetical protein; Provisional
Probab=37.70 E-value=76 Score=29.04 Aligned_cols=57 Identities=14% Similarity=0.396 Sum_probs=40.2
Q ss_pred HHHHHHcCCEEecCCccccccccccCCCEEEECCCC---CCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHH
Q 019556 30 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFG---AAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 99 (339)
Q Consensus 30 v~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHG---v~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~ 99 (339)
..+|.+.|....-.. ...++.| .||+..+| ++|+..+..++.|+.+||++ |+.+.+.
T Consensus 19 g~KL~r~g~~~~~~~-----~~~~~~g-~IvL~P~a~~~lSp~D~~~~~~~Gi~vlDcS-------W~~~~~~ 78 (171)
T PRK02287 19 ARKLVRFGLARLVRS-----IRKIPRG-SIVLNPFAEKALSPADRDIVEKRGIVALDCS-------WNEAERV 78 (171)
T ss_pred HHHHHhCCceeEecc-----cccCCCC-eEEECCCCCcCcCHHHHHhhhhCCEEEEECC-------HHHHhhh
Confidence 467888997654321 1233334 48888886 57999999999999999998 5555554
No 178
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.69 E-value=44 Score=32.14 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=42.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++.+.||-|++..-+| .+++|. ..-++..|+|+..|+-+.. .+++++.+.+.+..-+.+
T Consensus 46 el~~~D~~~~p~~a~~-~~~~li-~~~~v~~iiG~~~s~~~~~-~~~~~~~~ip~i~~~~~~ 104 (347)
T cd06336 46 EIVSYDDKYDPAEAAA-NARRLV-QQDGVKFILGPIGGGITAA-QQITERNKVLLLTAYSSD 104 (347)
T ss_pred EEEEecCCCCHHHHHH-HHHHHH-hhcCceEEEeCCCCchhhh-hhhhhhcCceEEeccCCc
Confidence 5668899998877764 456665 3335667788888887777 899999887766555433
No 179
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=37.68 E-value=47 Score=32.62 Aligned_cols=55 Identities=27% Similarity=0.357 Sum_probs=43.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.||-.+...-+ +++++|. .+ ++..|||+..|+.+.-+.+++++.+.+.+.
T Consensus 67 ielv~~D~~~~p~~a~-~~~~~Li-~~-~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~ 121 (369)
T PRK15404 67 LEGVEYDDACDPKQAV-AVANKVV-ND-GIKYVIGHLCSSSTQPASDIYEDEGILMIT 121 (369)
T ss_pred EEEEeecCCCCHHHHH-HHHHHHH-hC-CceEEEcCCCchhHHHhHHHHHHCCCeEEe
Confidence 4667888888776655 4667787 43 677789999999999999999999877654
No 180
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.65 E-value=3e+02 Score=24.65 Aligned_cols=122 Identities=21% Similarity=0.217 Sum_probs=58.2
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++... ++-.-|..+.+.+.+...+ .+ ..+.++++ ....+.| +.++.+.+.++|.+|+.+-..+..
T Consensus 2 Ig~i~p~-~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~--- 69 (263)
T cd06280 2 VGLIVAD-IRNPFFTAVSRAVEDAAYR-AG-----LRVILCNT--DEDPEKEAMYLELMEEERVTGVIFAPTRATLR--- 69 (263)
T ss_pred EEEEecc-cccccHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCch---
Confidence 3455432 3344566676666553222 22 12322211 1122334 344556556799999987543332
Q ss_pred HHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCC
Q 019556 258 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAST 315 (339)
+.+. ...+.|..++.+..+-..-..+.-.. ..+ .+.+- .+..|.++|++-+|.+.
T Consensus 70 ~~~~-~~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~--L~~~g~~~i~~~~~~~~ 126 (263)
T cd06280 70 RLAE-LRLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEH--LVAQGYRRIGGLFGNAS 126 (263)
T ss_pred HHHH-HhcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHH--HHHCCCceEEEEeCCCC
Confidence 2333 45678999998753311100011001 111 11111 12247889998777544
No 181
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=37.54 E-value=33 Score=32.18 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=65.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCcc-CCCCcchhhh-ccc
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHG 291 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el-~~~~~~~~~~-~~~ 291 (339)
-++.+.|+-++++.- ++++++|. ..=.+.+|||+..|..+..+.+++++.+.+.+.--+..+- +..+.+.... ..-
T Consensus 43 i~l~~~D~~~~~~~a-~~~~~~l~-~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~ 120 (343)
T PF13458_consen 43 IELVVYDDGGDPAQA-VQAARKLI-DDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQ 120 (343)
T ss_dssp EEEEEEE-TT-HHHH-HHHHHHHH-HTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHH
T ss_pred ceeeeccCCCChHHH-HHHHHHhh-hhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccH
Confidence 456788888877776 45667775 3457888899999999999999999998877663222221 1122222111 001
Q ss_pred hhhhhhcccc--CCCcEEEEeecCC-CcHHHHHHHHHHHHhh
Q 019556 292 ELVEKENWLP--KGQITIGITSGAS-TPDKAVEDVLKKVFEI 330 (339)
Q Consensus 292 ~~~~~~~wl~--~~~~~VGITAGAS-TP~~lI~eVi~~l~~~ 330 (339)
+...--+|+- .+.++|+|.+... ....+.+.+...+++.
T Consensus 121 ~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~ 162 (343)
T PF13458_consen 121 QAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAA 162 (343)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhc
Confidence 2222223321 2568899887652 3344555555555543
No 182
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.54 E-value=54 Score=30.64 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=41.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
-++.+.|+-|+..... +.+++|..+ =.+..|||+..|.-+..+.+++++.+.|.+..-.
T Consensus 41 l~~~~~D~~~~~~~~~-~~~~~li~~-~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~~ 99 (334)
T cd06347 41 IELVVEDNKSDKEEAA-NAATRLIDQ-DKVVAIIGPVTSGATLAAGPIAEDAKVPMITPSA 99 (334)
T ss_pred EEEEEecCCCChHHHH-HHHHHHhcc-cCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCCC
Confidence 3567789988876665 455666533 2344457888888888999999999988765433
No 183
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=37.49 E-value=2.8e+02 Score=28.13 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=42.6
Q ss_pred ceEEEEEccC-----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCC
Q 019556 177 VKVGIANQTT-----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~n 251 (339)
..+++.+|.| .+.+++++|.++-++.=...+. +-.+++|-.+.- +-+++++. .-||.+-+-|.|+
T Consensus 132 ~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHm-----DGAR~~nA~val----g~~~~~~~-~~~D~v~~~~tK~ 201 (342)
T COG2008 132 PLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHM-----DGARLANALVAL----GVALKTIK-SYVDSVSFCLTKG 201 (342)
T ss_pred ceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceee-----chHHHHHHHHHc----CCCHHHHH-hhCCEEEEecccC
Confidence 4788999998 8899999999988762111111 123444433322 27778886 6799988877766
No 184
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.49 E-value=49 Score=35.45 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhC--CCceee
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~--~~ty~I 272 (339)
.+++.+++.|..-.+|.+++|||-.|- +..+|+|.+++.+ .+...|
T Consensus 151 e~~~~i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 151 EQKEACLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 466677776655679999999998886 4458899887763 444444
No 185
>PRK09701 D-allose transporter subunit; Provisional
Probab=37.40 E-value=2.2e+02 Score=26.90 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=54.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-+ ++-.-|..+.+-+.+... ..+ ..+.+.++-+..-..+|.+ ++.+.++.+|.+|+.+...+.+.
T Consensus 25 ~~Igvi~~~-~~~~f~~~~~~gi~~~a~-~~g-----~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~ 97 (311)
T PRK09701 25 AEYAVVLKT-LSNPFWVDMKKGIEDEAK-TLG-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 97 (311)
T ss_pred CeEEEEeCC-CCCHHHHHHHHHHHHHHH-HcC-----CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 478888754 445567777777765432 222 2233333333334456644 45555567999999986544444
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
..+.+ +.+.+.|...+.+.
T Consensus 98 ~~l~~-~~~~giPvV~~~~~ 116 (311)
T PRK09701 98 MPVAR-AWKKGIYLVNLDEK 116 (311)
T ss_pred HHHHH-HHHCCCcEEEeCCC
Confidence 55544 45788898888765
No 186
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=37.34 E-value=38 Score=28.70 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHhhhhCCcEEEE-EcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 233 MYKMVEEKVDLILV-VGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 233 ~~~la~~~vD~miV-VGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
++++....+.+-.| +| .+.|...|-++|+..+-..|+|++.+||+.
T Consensus 122 ~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~~~~~~~ 168 (170)
T cd01465 122 VAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDNLAEARK 168 (170)
T ss_pred HHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCCHHHHHh
Confidence 33432234554433 44 678999999999887778999999999874
No 187
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=37.09 E-value=2.3e+02 Score=25.13 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=47.7
Q ss_pred EEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 180 GIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 180 ~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
+++.- .++...|..+.+-+.+.+.+ .+ .++.+.++ .....+| +.+++|.+..+|.+|+.+... +..+
T Consensus 3 gvv~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~~dgii~~~~~~---~~~~ 70 (259)
T cd01542 3 GVIVP-RLDSFSTSRTVKGILAALYE-NG-----YQMLLMNT--NFSIEKEIEALELLARQKVDGIILLATTI---TDEH 70 (259)
T ss_pred EEEec-CCccchHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCC---CHHH
Confidence 44443 23444556666666553322 22 22333322 1123444 455667667899999997532 3456
Q ss_pred HHHHHHhCCCceeeCCC
Q 019556 259 QEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~ 275 (339)
++.+++.+.|...++..
T Consensus 71 ~~~~~~~~ipvv~~~~~ 87 (259)
T cd01542 71 REAIKKLNVPVVVVGQD 87 (259)
T ss_pred HHHHhcCCCCEEEEecc
Confidence 66677778899888764
No 188
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=36.87 E-value=47 Score=26.34 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=31.2
Q ss_pred HhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceeeCCCCccCC
Q 019556 235 KMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 235 ~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
.|-.+++-++|+- .--|.||+ ++-.+|++++.|.+.+.+-.||-.
T Consensus 22 ai~~gkaklViiA-~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~ 67 (82)
T PRK13602 22 ALKRGSVKEVVVA-EDADPRLTEKVEALANEKGVPVSKVDSMKKLGK 67 (82)
T ss_pred HHHcCCeeEEEEE-CCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 3333455555544 44455665 677899999999999999888864
No 189
>PRK09526 lacI lac repressor; Reviewed
Probab=36.79 E-value=3.7e+02 Score=25.33 Aligned_cols=126 Identities=12% Similarity=0.211 Sum_probs=59.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
..|+++... ++-..|..+...+.+...+ .+ .++.++++-.+....-++.++.|.+..+|.+|+.+..++..-.
T Consensus 64 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~ 136 (342)
T PRK09526 64 LTIGLATTS-LALHAPSQIAAAIKSRADQ-LG-----YSVVISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAE 136 (342)
T ss_pred ceEEEEeCC-CCcccHHHHHHHHHHHHHH-CC-----CEEEEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHH
Confidence 468888654 3333455666666553222 22 2233332222211222345666666789999997544433323
Q ss_pred HHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCC
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAS 314 (339)
.|.+ +..+.|..+++.....+- .-+.... .++ .+.+-.- ..|.++|++-+|..
T Consensus 137 ~~~~--~~~~iPvV~~d~~~~~~~-~~V~~d~~~~~~~a~~~L~--~~G~~~I~~l~g~~ 191 (342)
T PRK09526 137 KIVA--DCADVPCLFLDVSPQSPV-NSVSFDPEDGTRLGVEHLV--ELGHQRIALLAGPE 191 (342)
T ss_pred HHHh--hcCCCCEEEEeccCCCCC-CEEEECcHHHHHHHHHHHH--HCCCCeEEEEeCCC
Confidence 3322 234678888876322111 0011011 111 1122111 23788999988754
No 190
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=36.53 E-value=43 Score=32.77 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=45.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee-eCCCCccC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW-IDSEKRIG 279 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~-Ie~~~el~ 279 (339)
++.+.||-|....--+.+.+-+. +-.+..|||+..|+-+.-...+|...+.|-+- --+..+|.
T Consensus 43 ~~~~~D~~~~~~~a~~~~~~l~~--~~~v~aiiGp~~S~~~~av~~va~~~~iP~is~~s~s~~ls 106 (391)
T cd06372 43 EFTYTNSTCSAKESLAGFIDQVQ--KEHISALFGPACPEAAEVTGLLASQWNIPMFGFVGQTAKLD 106 (391)
T ss_pred EEEEecCCCCccHHHHHHHHHHH--hcCceEEECCCCCcHHHHHHHHHhccCccEEEeecCCcccc
Confidence 45578999988776665555443 23566789999999999999999999887543 22344553
No 191
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=36.44 E-value=1.8e+02 Score=29.14 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=47.4
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.||.-..+.. ..++.+.+.|++ . ..++.+|+.++ +.|.+-= ++++.+-...+|++|=|||-.+-
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-----~-----g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-----A-----GLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-----C-----CCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 5788887654433 256667776654 1 12344555554 2333222 23333323479999999999999
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|..-++...
T Consensus 101 D~aK~ia~~~~~ 112 (382)
T PRK10624 101 DTCKAIGIISNN 112 (382)
T ss_pred HHHHHHHHHHHC
Confidence 999887766543
No 192
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=36.37 E-value=49 Score=37.36 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=75.7
Q ss_pred eE-EecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHH
Q 019556 17 IW-ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 95 (339)
Q Consensus 17 Vy-~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~ 95 (339)
|+ =||=|--|++..++-.+.||.||....+ +++..|=-..-+..+.+.|+.+|=+|=|.+.-+...
T Consensus 84 IhPGYGfLSEn~efA~~c~eaGI~FIGP~~e-------------~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~ 150 (1149)
T COG1038 84 IHPGYGFLSENPEFARACAEAGITFIGPKPE-------------VLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEA 150 (1149)
T ss_pred ecCCcccccCCHHHHHHHHHcCCEEeCCCHH-------------HHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHH
Confidence 44 4888999999999999999999974211 123334344778889999999999999999988766
Q ss_pred HHHHhcCCCeEEEEecCCCceeeeeccccCc-EEEEcChHHHHHhh
Q 019556 96 VEKHKKGDYTSIIHGKYSHEETVATASFAGK-YIIVKNMKEAEYVC 140 (339)
Q Consensus 96 ~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~~-~~vv~~~~e~~~~~ 140 (339)
.+-..+-||.++| ++..|=.+. .=+|.+.+++...+
T Consensus 151 ~~fa~~~gyPvmi---------KA~~GGGGRGMR~vr~~~~l~~~~ 187 (1149)
T COG1038 151 LEFAEEYGYPVMI---------KAAAGGGGRGMRVVRSEADLAEAF 187 (1149)
T ss_pred HHHHHhcCCcEEE---------EEccCCCccceeeecCHHHHHHHH
Confidence 5555667999886 455554444 45778888876654
No 193
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.36 E-value=2.3e+02 Score=25.52 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=49.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++..+ ++-.-|.++...+.+...+. +. ...+.++ .+....++|.+ ++.+.+..+|.+|+.+...+.+...
T Consensus 2 Ig~v~~~-~~~~~~~~~~~gi~~~~~~~-~~---~~~~~~~--~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~ 74 (271)
T cd06321 2 IGVSVGD-LGNPFFVALAKGAEAAAKKL-NP---GVKVTVV--SADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPA 74 (271)
T ss_pred eEEEecc-cCCHHHHHHHHHHHHHHHHh-CC---CeEEEEc--cCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHH
Confidence 4555543 45566777777776643331 11 1122222 23444556644 3444457899999876433334444
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+ +.+++.+.|...+...
T Consensus 75 i-~~~~~~~ipvv~~~~~ 91 (271)
T cd06321 75 V-KRAQAAGIVVVAVDVA 91 (271)
T ss_pred H-HHHHHCCCeEEEecCC
Confidence 4 4456778899888764
No 194
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=36.36 E-value=3.1e+02 Score=24.45 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=45.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
++++.- +++..-|.++..-+.+.+.+ .+ .++.+.++- +-++..+.|.+..+|.+|+.+... +.. .
T Consensus 2 igvv~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~-----~~~~~~~~l~~~~vdgii~~~~~~--~~~-~ 66 (261)
T cd06272 2 IGLIWP-SVSRVALTELVTGINQAISK-NG-----YNMNVSITP-----SLAEAEDLFKENRFDGVIIFGESA--SDV-E 66 (261)
T ss_pred EEEEec-CCCchhHHHHHHHHHHHHHH-cC-----CEEEEEecc-----cHHHHHHHHHHcCcCEEEEeCCCC--ChH-H
Confidence 345542 34556677777777664332 22 122222221 112334445456899999986432 222 3
Q ss_pred HHHHHHhCCCceeeCCCC
Q 019556 259 QEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~~ 276 (339)
++...+.+.|...+++..
T Consensus 67 ~~~~~~~~ipvV~~~~~~ 84 (261)
T cd06272 67 YLYKIKLAIPVVSYGVDY 84 (261)
T ss_pred HHHHHHcCCCEEEEcccC
Confidence 344557888998898754
No 195
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=36.25 E-value=69 Score=29.51 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCC-CCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~-nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
.||=+ .++ ++-|++|+|-+. +|.|..+.++.|++.|.++..|.+..+
T Consensus 100 ~~ql~--~~~-~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 100 AKQVR--ALG-HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred HHHHH--HcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45544 354 578999998774 788888999999999999999988643
No 196
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.24 E-value=1e+02 Score=28.31 Aligned_cols=73 Identities=15% Similarity=0.302 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCc-chHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCC
Q 019556 240 KVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAS 314 (339)
Q Consensus 240 ~vD~miVVGG~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAS 314 (339)
..|+++. ..+.. =..++++.|++.+....-+.+++ +.. -.|| .|.-.|+||+|..
T Consensus 69 ~~~lVi~--at~d~~ln~~i~~~a~~~~ilvn~~d~~e-~~~-----------------f~~pa~~~~g~l~iaisT~G~ 128 (205)
T TIGR01470 69 GAFLVIA--ATDDEELNRRVAHAARARGVPVNVVDDPE-LCS-----------------FIFPSIVDRSPVVVAISSGGA 128 (205)
T ss_pred CcEEEEE--CCCCHHHHHHHHHHHHHcCCEEEECCCcc-cCe-----------------EEEeeEEEcCCEEEEEECCCC
Confidence 3555443 33332 33689999998876655444432 222 2222 4667999999988
Q ss_pred CcHHHHHHHHHHHHhhhhh
Q 019556 315 TPDKAVEDVLKKVFEIKRE 333 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~~~~ 333 (339)
.|- +-..+.+.|+++.++
T Consensus 129 sP~-la~~lr~~ie~~l~~ 146 (205)
T TIGR01470 129 APV-LARLLRERIETLLPP 146 (205)
T ss_pred CcH-HHHHHHHHHHHhcch
Confidence 884 345566666655443
No 197
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=36.17 E-value=2.2e+02 Score=25.73 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 27 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
+.-.+.|++.|+.++--.+.. -+++++-|.|||+- |-+....+.|.+. ..+.+.++++.++|-.|
T Consensus 14 ~e~~~~l~~~G~~v~~~s~~~--~~~l~~~D~lilPG-G~~~~~~~~L~~~------------~~~~~~i~~~~~~g~pi 78 (198)
T cd03130 14 PENLELLEAAGAELVPFSPLK--DEELPDADGLYLGG-GYPELFAEELSAN------------QSMRESIRAFAESGGPI 78 (198)
T ss_pred HHHHHHHHHCCCEEEEECCCC--CCCCCCCCEEEECC-CchHHHHHHHHhh------------HHHHHHHHHHHHcCCCE
Confidence 345678999998766421100 03344457899999 8766556666442 34677788888888654
Q ss_pred EEE
Q 019556 107 IIH 109 (339)
Q Consensus 107 IIi 109 (339)
+-+
T Consensus 79 lgI 81 (198)
T cd03130 79 YAE 81 (198)
T ss_pred EEE
Confidence 433
No 198
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=36.02 E-value=86 Score=27.89 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=48.2
Q ss_pred CceEEecccccCH-----HHHHHHHHcCCEEecCCcc-----------ccccccccCC-CEE-EECCCCCCHHHHHHHHh
Q 019556 15 EKIWITNEIIHNP-----TVNKRLEEMAVQNIPVEEG-----------KKQFDVVNKG-DVV-VLPAFGAAVEEMVTLNN 76 (339)
Q Consensus 15 ~~Vy~lG~lIHN~-----~Vv~~L~~~Gv~~v~~~~~-----------~~~~~~~~~g-~~V-IIrAHGv~~~~~~~l~~ 76 (339)
+.|-+.| +=+|| .|.+.|.++|-+++.-.+. ..++.++|+. |+| |||.--.-|++.+++-+
T Consensus 17 K~IAvVG-~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR~~e~~~~i~~eal~ 95 (140)
T COG1832 17 KTIAVVG-ASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFRRSEAAPEVAREALE 95 (140)
T ss_pred ceEEEEe-cCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEecChhhhHHHHHHHHh
Confidence 4566666 34555 6999999999888764431 1367777752 454 89998888888888888
Q ss_pred cCCcEE
Q 019556 77 KNVQIV 82 (339)
Q Consensus 77 ~g~~ii 82 (339)
+|.+++
T Consensus 96 ~~~kv~ 101 (140)
T COG1832 96 KGAKVV 101 (140)
T ss_pred hCCCeE
Confidence 886664
No 199
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.84 E-value=34 Score=28.96 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC-CcHHHHHHHHHHHH
Q 019556 250 WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS-TPDKAVEDVLKKVF 328 (339)
Q Consensus 250 ~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS-TP~~lI~eVi~~l~ 328 (339)
...+|+.-|.+..++.|-...+...+.|=+. .+. ..-..|+ +.+..|=+|.|.| +|+....+++..+-
T Consensus 16 i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~--~i~--------~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 16 IEDTNGPALEALLEDLGCEVIYAGVVPDDAD--SIR--------AALIEAS-READLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred eEEchHHHHHHHHHHCCCEEEEeeecCCCHH--HHH--------HHHHHHH-hcCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 3468999999999999865444422221100 011 1112566 4566666665555 47778888777664
No 200
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=35.59 E-value=43 Score=31.43 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHH
Q 019556 242 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 319 (339)
Q Consensus 242 D~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 319 (339)
|.+++-||+.+.. +-++++|++.|.+.+++|.-- |.+. ..+.....-.|+ -....|+-+-+|.|...
T Consensus 1 d~v~~wg~~~~~~-~~~~~~a~~~~i~~~~~E~G~-lR~~-------~~~~~~~~P~s~--~~D~~Gv~~~s~~~~~~ 67 (269)
T PF05159_consen 1 DAVVVWGDKRPYH-RAAIEVAKELGIPVIFFEDGF-LRSI-------GLGSDGYPPDSL--TIDPQGVNADSSLPSDL 67 (269)
T ss_pred CEEEEECCCccHH-HHHHHHHHHhCCCEEEEecCc-cccc-------cccccCCCCeEE--EECCCCccCCCCCcccH
Confidence 7888998866544 445789999999999999642 2200 000000000333 24667888888766543
No 201
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.39 E-value=2.5e+02 Score=25.13 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHH
Q 019556 186 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAED 264 (339)
Q Consensus 186 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~ 264 (339)
+..-.-|.++.+-+.+...+ .+ .++.+.+ |....++| +.++.+.+..+|.+|+.+.. +.-+...++.+++
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~-~g-----~~~~i~~--~~~~~~~~~~~~~~~~~~~vdgiii~~~~-~~~~~~~~~~~~~ 78 (267)
T cd06322 8 TQQHPFYIELANAMKEEAKK-QK-----VNLIVSI--ANQDLNKQLSDVEDFITKKVDAIVLSPVD-SKGIRAAIAKAKK 78 (267)
T ss_pred CcccHHHHHHHHHHHHHHHh-cC-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCCC-hhhhHHHHHHHHH
Confidence 34445566677666653222 22 2333332 33345566 44555555789999997642 2223445566778
Q ss_pred hCCCceeeCCC
Q 019556 265 RGIPSYWIDSE 275 (339)
Q Consensus 265 ~~~~ty~Ie~~ 275 (339)
.+.|...++..
T Consensus 79 ~~ipvV~~~~~ 89 (267)
T cd06322 79 AGIPVITVDIA 89 (267)
T ss_pred CCCCEEEEccc
Confidence 88999888764
No 202
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.37 E-value=62 Score=26.84 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=36.9
Q ss_pred CCCEEEECCC--C----CCHHHHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhcCCCe-EEEEecCC
Q 019556 55 KGDVVVLPAF--G----AAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYT-SIIHGKYS 113 (339)
Q Consensus 55 ~g~~VIIrAH--G----v~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~-iIIiG~~~ 113 (339)
+-+++|+... . ..-+..+.|++.|+.+ +|-. +++.+..+...+.|+. ++|+|+.+
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 3455666543 2 1234678888889888 5644 5777777777888987 77778665
No 203
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.34 E-value=2.9e+02 Score=24.89 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=48.6
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhc--ccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKF--GVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
||+++.. .++-.-|..+.+.+.+...+.. +- ..++.++++ .....+| +.++.+...++|.+|+.+... ..
T Consensus 1 ~Ig~i~~-~~~~~~~~~~~~~i~~~~~~~~~~g~---~~~l~i~~~--~~~~~~~~~~~~~~~~~~vdgiIi~~~~~-~~ 73 (272)
T cd06300 1 KIGLSNS-YAGNTWRAQMLDEFKAQAKELKKAGL---ISEFIVTSA--DGDVAQQIADIRNLIAQGVDAIIINPASP-TA 73 (272)
T ss_pred CeEEecc-ccCChHHHHHHHHHHHHHHhhhccCC---eeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCh-hh
Confidence 3555553 2344556667766655332220 10 002233322 2233444 444555557899999987432 22
Q ss_pred hHHHHHHHHHhCCCceeeCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~ 275 (339)
....++.+++.+.|...+.+.
T Consensus 74 ~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 74 LNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred hHHHHHHHHHCCCeEEEEecC
Confidence 344666777888898888754
No 204
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.25 E-value=2e+02 Score=26.96 Aligned_cols=77 Identities=10% Similarity=0.174 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhh--CCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 189 KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEE--KVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 189 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~--~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
-.-|..+...+...+.+ .+ ..+.+. .+....++|.+ ++.+.+. .+|.+|+.+... ...++.+.+++.
T Consensus 12 ~~~~~~~~~gi~~~~~~-~g-----~~v~~~--~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~--~~~~~~~~~~~~ 81 (305)
T cd06324 12 EPFWNSVARFMQAAADD-LG-----IELEVL--YAERDRFLMLQQARTILQRPDKPDALIFTNEKS--VAPELLRLAEGA 81 (305)
T ss_pred CcHHHHHHHHHHHHHHh-cC-----CeEEEE--eCCCCHHHHHHHHHHHHHhccCCCEEEEcCCcc--chHHHHHHHHhC
Confidence 34466666666553322 22 122222 23345566644 4555555 799999976432 345666778789
Q ss_pred CCCceeeCCC
Q 019556 266 GIPSYWIDSE 275 (339)
Q Consensus 266 ~~~ty~Ie~~ 275 (339)
|.|...+.+.
T Consensus 82 giPvV~~~~~ 91 (305)
T cd06324 82 GVKLFLVNSG 91 (305)
T ss_pred CCeEEEEecC
Confidence 9999888764
No 205
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=34.97 E-value=1.2e+02 Score=29.94 Aligned_cols=78 Identities=12% Similarity=0.120 Sum_probs=45.7
Q ss_pred eEEEEEccCCChH-HHHHHHHHHHHHHhhhcccccccccccccc---cccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 178 KVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFN---TICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 178 ~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~n---TIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
|+.+|+-..+... .++.+.+.|++ . ..++.+|+ .-|.....+ ++++.+....+|++|-|||-..-
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~-----~-----~i~~~~~~~~~~~p~~~~v~-~~~~~~~~~~~D~IIaiGGGS~~ 91 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEE-----A-----GIEVQVFDGVGPNPTLEDVD-EAAEQARKFGADCIIAIGGGSVM 91 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHH-----T-----TCEEEEEEEESSS-BHHHHH-HHHHHHHHTTSSEEEEEESHHHH
T ss_pred CEEEEECchHHhCccHHHHHHHHhh-----C-----ceEEEEEecCCCCCcHHHHH-HHHHHHHhcCCCEEEEcCCCCcC
Confidence 7777775544433 45666666643 1 12233333 223333332 23333333579999999999999
Q ss_pred chHHHHHHHHHhC
Q 019556 254 NTSHLQEIAEDRG 266 (339)
Q Consensus 254 NT~rL~eia~~~~ 266 (339)
.+-|.+.+.....
T Consensus 92 D~aK~va~~~~~~ 104 (366)
T PF00465_consen 92 DAAKAVALLLANP 104 (366)
T ss_dssp HHHHHHHHHHTSS
T ss_pred cHHHHHHhhccCC
Confidence 9999988886653
No 206
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=34.92 E-value=69 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHhhhhCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCC
Q 019556 232 AMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++.+.+ .++|++||||-.-+-. ...|...|++.|.+...|.-..
T Consensus 165 ~~~~~~-~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 165 EIESVM-SKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred HHHHHH-HhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 444445 5799999999854333 3478889999998888776543
No 207
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.89 E-value=3e+02 Score=24.69 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=47.4
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++..+ ++-.-|..+.+-+.+... .++ ..+.++++--+ .+.| +.++.+.+..+|.+|+..+..+.+...
T Consensus 2 Ig~i~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~~~~--~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~ 72 (273)
T cd06305 2 IAVVRYG-GSGDFDQAYLAGTKAEAE-ALG-----GDLRVYDAGGD--DAKQADQIDQAIAQKVDAIIIQHGRAEVLKPW 72 (273)
T ss_pred eEEEeec-CCCcHHHHHHHHHHHHHH-HcC-----CEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEecCChhhhHHH
Confidence 4555443 333445556665554322 222 23444443222 2333 455555557899999987644334443
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
++-+++.|.|...+.+.
T Consensus 73 -i~~~~~~~ipvV~~~~~ 89 (273)
T cd06305 73 -VKRALDAGIPVVAFDVD 89 (273)
T ss_pred -HHHHHHcCCCEEEecCC
Confidence 44566788898888764
No 208
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.86 E-value=2.5e+02 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred hCCcEEEEEc-CCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVG-G~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
.+=|++|++- +-+|.++..+++.|++.|.++.-|-+..
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4569999987 4677799999999999999999998764
No 209
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=34.85 E-value=2.2e+02 Score=28.51 Aligned_cols=79 Identities=13% Similarity=0.233 Sum_probs=47.3
Q ss_pred ceEEEEEc-cCCC-hHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHH-HHHHHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQ-TTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQE-RQDAMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQ-TT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~-RQ~a~~~la~~~vD~miVVGG~nS 252 (339)
+++.+|.- .++. ...++.+.+.|++ . ..++.+|+.++ +.|.+ =++.++.+....+|++|-|||=..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~-----~-----gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDE-----H-----GIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHH-----c-----CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 57778774 3332 3345677777754 1 12345566554 22222 223333333356999999999999
Q ss_pred cchHHHHHHHHHh
Q 019556 253 SNTSHLQEIAEDR 265 (339)
Q Consensus 253 SNT~rL~eia~~~ 265 (339)
-.+-|..-+.-..
T Consensus 97 iD~aK~ia~~~~~ 109 (383)
T cd08186 97 IDSAKSAAILLEH 109 (383)
T ss_pred HHHHHHHHHHHhC
Confidence 9999988776443
No 210
>PRK14071 6-phosphofructokinase; Provisional
Probab=34.74 E-value=51 Score=33.24 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
.++..+..|.+..+|.+++|||-.|-.+-+ ++++..+.+.+.|-
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~~a~--~L~~~~~i~vIgiP 138 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLAILR--RLAQQGGINLVGIP 138 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHHHHH--HHHHhcCCcEEEec
Confidence 566777777667899999999999977652 33443466776663
No 211
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.34 E-value=3.5e+02 Score=24.35 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=42.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
++++.-+ +-.-|.++.+-+.+...+..+- .+.. |. +.. ++.+..|.+.++|.+|+.+ .|.. +
T Consensus 2 ig~i~~~--~~~~~~~~~~gi~~~~~~~~g~-----~~~~----~~-~~~-~~~~~~l~~~~vdGiI~~~----~~~~-~ 63 (265)
T cd01543 2 VALLVET--SSSYGRGVLRGIARYAREHGPW-----SIYL----EP-RGL-QEPLRWLKDWQGDGIIARI----DDPE-M 63 (265)
T ss_pred eEEEecc--cchhhHHHHHHHHHHHHhcCCe-----EEEE----ec-ccc-hhhhhhccccccceEEEEC----CCHH-H
Confidence 5565543 2455666666666543331211 1211 11 112 4445556567899999974 2333 3
Q ss_pred HHHHHHhCCCceeeCCC
Q 019556 259 QEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~ 275 (339)
++..++.+.|..++.+.
T Consensus 64 ~~~l~~~~~PvV~~~~~ 80 (265)
T cd01543 64 AEALQKLGIPVVDVSGS 80 (265)
T ss_pred HHHHhhCCCCEEEEeCc
Confidence 34455678899989764
No 212
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=34.30 E-value=91 Score=30.34 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=34.2
Q ss_pred HHHHHHhhhhCCcEEEEE----cCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 230 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 230 Q~a~~~la~~~vD~miVV----GG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
++.++++. ..+|.++|+ ||..|.=+..+++++++.+..+|-|=+
T Consensus 75 ~~~I~~~l-~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt 122 (304)
T cd02201 75 REEIKEAL-EGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVT 122 (304)
T ss_pred HHHHHHHH-hCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEe
Confidence 34567776 679999997 457777788899999999987776654
No 213
>COG1494 GlpX Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]
Probab=34.27 E-value=24 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=32.4
Q ss_pred CHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHH
Q 019556 26 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEM 71 (339)
Q Consensus 26 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~ 71 (339)
+.+.+.+++++|+ -++. .-.++++-.||.|||.|-||++-.+
T Consensus 248 ~~~e~~R~~~mGi-d~~~---vl~ledlv~gd~viFaATGvT~G~l 289 (332)
T COG1494 248 GEEERARCKAMGI-DVNK---VLSLEDLVRGDNVIFAATGVTDGDL 289 (332)
T ss_pred cHHHHHHHHHhCC-Chhh---eeeHHHhcCCCceEEEeccCcCcch
Confidence 6888999999999 2322 2246777788899999999998643
No 214
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=34.17 E-value=50 Score=33.68 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=58.5
Q ss_pred ceEEecccccCHH-------------HHHHHHHcC--CEEecCCccccccccccCCCEEEECC--CCCCHHH--------
Q 019556 16 KIWITNEIIHNPT-------------VNKRLEEMA--VQNIPVEEGKKQFDVVNKGDVVVLPA--FGAAVEE-------- 70 (339)
Q Consensus 16 ~Vy~lG~lIHN~~-------------Vv~~L~~~G--v~~v~~~~~~~~~~~~~~g~~VIIrA--HGv~~~~-------- 70 (339)
++|+.||.+.|+- ...-|+.+| |.+|.. ++++ ||.++-+| -|++|+.
T Consensus 11 ~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~n------itD~--ddKIi~~A~~~G~~~~e~a~~~~~~ 82 (384)
T PRK12418 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQN------VTDV--DDPLLERAARDGVDWRDLAEREIAL 82 (384)
T ss_pred EEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEe------cCCc--chHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6999999998862 345677788 555653 4444 45565554 5888774
Q ss_pred -HHHHHhcCCc----EEeCCCcchHHHHHHHHHHhcCCCeEEE
Q 019556 71 -MVTLNNKNVQ----IVDTTCPWVSKVWTSVEKHKKGDYTSII 108 (339)
Q Consensus 71 -~~~l~~~g~~----iiDaTCP~V~kv~~~~~~~~~~Gy~iII 108 (339)
.+.++..|+. ..=+|=+ +..++..++++.++||-..-
T Consensus 83 f~~d~~~Lni~~~~~~~raTe~-i~~~~~~i~~L~~kG~aY~~ 124 (384)
T PRK12418 83 FREDMEALRVLPPRDYVGAVES-IPEVVELVEKLLASGAAYVV 124 (384)
T ss_pred HHHHHHHhCCCCCCccccCCCC-HHHHHHHHHHHHHCCCEEEe
Confidence 4556666753 3455554 89999999999999998754
No 215
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=33.73 E-value=1.5e+02 Score=29.46 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=55.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhh-hh---CCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV-EE---KVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la-~~---~vD~miVVGG~nS 252 (339)
+++.+|+-.+....-.+.+.+.|++ .+. ....+.+.+.-|+.|.+.=+.+.+.+ +. +.|++|-|||=..
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~-----~gi--~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEA-----AGF--EVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh-----cCC--ceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 5788888777755555555555543 110 01111233444555544444443332 11 3499999999999
Q ss_pred cchHHHHHHHHHhCCCceeeCCC
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
-.+-+.+...-..+.|-+.|-|-
T Consensus 105 ~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 105 GDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHHHHHHHHhcCCCCEEEcCch
Confidence 99999887655677887888774
No 216
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=33.70 E-value=57 Score=31.01 Aligned_cols=57 Identities=9% Similarity=-0.024 Sum_probs=41.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.++.+.||=++.+.-. +.+++|. .+-.+..|||+..|+.+..+.+++++.+.+....
T Consensus 39 i~l~~~D~~~~p~~a~-~~~~~lv-~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~ 95 (333)
T cd06359 39 VEVVVEDDGLKPDVAK-QAAERLI-KRDKVDFVTGVVFSNVLLAVVPPVLESGTFYIST 95 (333)
T ss_pred EEEEecCCCCChHHHH-HHHHHHH-hhcCCcEEEccCCcHHHHHHHHHHHHcCCeEEec
Confidence 3566778888776555 4556776 3334556679889999999999999998876654
No 217
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=33.61 E-value=2.1e+02 Score=28.45 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=47.2
Q ss_pred ceEEEEEccCC--ChHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHHHHH-HHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTM--LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQDAM-YKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ~a~-~~la~~~vD~miVVGG~nS 252 (339)
+++.+|.-... ....++++.+.|++ . ..++.+|+.+. +.|.+-=+++ +.+-...+|++|=|||=.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-----~-----~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-----A-----GVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-----c-----CCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 57888886543 44566777777754 1 12344455442 2222222222 2222347999999999999
Q ss_pred cchHHHHHHHHHh
Q 019556 253 SNTSHLQEIAEDR 265 (339)
Q Consensus 253 SNT~rL~eia~~~ 265 (339)
-.+-|..-+....
T Consensus 96 iD~aK~ia~~~~~ 108 (380)
T cd08185 96 MDTAKAIAFMAAN 108 (380)
T ss_pred HHHHHHHHHHhhC
Confidence 9999988776433
No 218
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=33.53 E-value=63 Score=30.60 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=40.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhC-------------CcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEK-------------VDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~-------------vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
++.+.||-|+...-. .++.+|. .+ -.+..|||+..|+.+..+.+++.+.+.|..-
T Consensus 53 ~l~~~D~~~~~~~a~-~~a~~li-~~~~~~~~~~~~~~~~~v~aiiG~~~S~~~~a~~~~~~~~~vp~is 120 (348)
T cd06350 53 GYHIYDSCCSPAVAL-RAALDLL-LSGEGTTPPYSCRKQPKVVAVIGPGSSSVSMAVAELLGLFKIPQIS 120 (348)
T ss_pred eEEEEecCCcchHHH-HHHHHHH-hcCCCCCCCCcCCCCCceEEEECCCccHHHHHHHHHHhcCcCceec
Confidence 566778888765443 4444554 34 5788899999999999999999998877543
No 219
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=33.46 E-value=2.4e+02 Score=27.03 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=58.9
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHH---------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL--------- 74 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l--------- 74 (339)
+|...++. +..|+.+. .|+...+.|.+.|+....+. -+.+...|.||+-- --+..+...+
T Consensus 16 mA~~l~~~--G~~V~v~d---~~~~~~~~~~~~g~~~~~s~-----~~~~~~aDvVi~~v-p~~~~~~~vl~~~~~i~~~ 84 (296)
T PRK15461 16 MASNLLKQ--GHQLQVFD---VNPQAVDALVDKGATPAASP-----AQAAAGAEFVITML-PNGDLVRSVLFGENGVCEG 84 (296)
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHcCCcccCCH-----HHHHhcCCEEEEec-CCHHHHHHHHcCcccHhhc
Confidence 45555543 33677764 48889999999998766542 11223345544432 2222222222
Q ss_pred HhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 75 NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 75 ~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
..+|..+||.+--.....++.++.+.++|...
T Consensus 85 l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 85 LSRDALVIDMSTIHPLQTDKLIADMQAKGFSM 116 (296)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 13577899999999999999999999998663
No 220
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=33.44 E-value=4e+02 Score=24.80 Aligned_cols=125 Identities=15% Similarity=0.217 Sum_probs=61.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++..+ ++-.-|..+.+-+.+...+ .+ .++.++. +.-..++| +.++.|.+..+|.+|+.+...+...
T Consensus 57 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~ 127 (327)
T PRK10423 57 RTIGMLITA-STNPFYSELVRGVERSCFE-RG-----YSLVLCN--TEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPS 127 (327)
T ss_pred CeEEEEeCC-CCCCcHHHHHHHHHHHHHH-cC-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhh
Confidence 478887743 3444566676666553332 22 1222221 22233455 3455565578999999986655443
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAS 314 (339)
..+++ +..+.|...+....+-.....+.... ..+ .+.+ ..+..|.++||+.+|..
T Consensus 128 ~~~l~--~~~~iPvV~i~~~~~~~~~~~v~~d~~~~~~~a~~--~L~~~G~~~I~~i~~~~ 184 (327)
T PRK10423 128 REIMQ--RYPSVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQ--YLIDKGYTRIACITGPL 184 (327)
T ss_pred HHHHH--hcCCCCEEEECCccCCCCCCEEEEChHHHHHHHHH--HHHHcCCCeEEEEeCCc
Confidence 33322 22467888887532111100010000 111 1121 12235788999987754
No 221
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=33.32 E-value=73 Score=30.08 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=43.6
Q ss_pred EECCCCCCH--------HHHHHHHhcCCcEEeCCCcc--------------hHHHHHHHHHHhcCCCeEEEEecCCCcee
Q 019556 60 VLPAFGAAV--------EEMVTLNNKNVQIVDTTCPW--------------VSKVWTSVEKHKKGDYTSIIHGKYSHEET 117 (339)
Q Consensus 60 IIrAHGv~~--------~~~~~l~~~g~~iiDaTCP~--------------V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv 117 (339)
+||-|.|+| ++.+.|.+.|+...=+.=|. -.+.++..+.+.++|+.|+++| ..|.-.
T Consensus 3 lirleDVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lHG-YtHq~~ 81 (243)
T PF10096_consen 3 LIRLEDVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLHG-YTHQYG 81 (243)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEEe-cceecC
Confidence 677778887 56677777888764343333 4577788889999999999999 566664
Q ss_pred eeec
Q 019556 118 VATA 121 (339)
Q Consensus 118 ~gi~ 121 (339)
.+..
T Consensus 82 ~~~s 85 (243)
T PF10096_consen 82 NSVS 85 (243)
T ss_pred CCcc
Confidence 3333
No 222
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=33.18 E-value=52 Score=32.81 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhC--CCceee
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I 272 (339)
...++.+++.|-+..+|.+++|||-.|-.+- +|.|.+++.+ .+...|
T Consensus 78 ~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigi 127 (338)
T cd00363 78 EEGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGL 127 (338)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEe
Confidence 3456677777766789999999999988665 8888887764 344554
No 223
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=33.10 E-value=2.7e+02 Score=23.99 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=32.2
Q ss_pred hCCcEEEEEcCC-CCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGGW-NSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG~-nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++-|++|+|... +|.++...++.|+++|.++..|.+..+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 467999998764 677888999999999999999988543
No 224
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.95 E-value=4.7e+02 Score=25.50 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=70.9
Q ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 176 LVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 176 ~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
.++++++..++-. .-|..+.+-+++.. +.++- ++.+.. --......| +.++.|.++.+|.++|.+ ++++
T Consensus 23 ~~~i~~v~k~~~~-pf~~~~~~Gi~~aa-~~~G~-----~v~~~~-~~~~d~~~q~~~i~~li~~~vdgIiv~~--~d~~ 92 (336)
T PRK15408 23 AERIAFIPKLVGV-GFFTSGGNGAKEAG-KELGV-----DVTYDG-PTEPSVSGQVQLINNFVNQGYNAIIVSA--VSPD 92 (336)
T ss_pred CcEEEEEECCCCC-HHHHHHHHHHHHHH-HHhCC-----EEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEec--CCHH
Confidence 3689999987754 45777776666532 23331 222211 112334555 455666567899999973 3444
Q ss_pred -hHHHHHHHHHhCCCceeeCCCCccCCCCcchhh-----hccchh--hhhhccccCCCcEEEEeecCCCc
Q 019556 255 -TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK-----LMHGEL--VEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 255 -T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~-----~~~~~~--~~~~~wl~~~~~~VGITAGASTP 316 (339)
.....+-+++.|.|...+++..+-+. ...|- ...|+. ..-.+.+..+..+|++-.|..+.
T Consensus 93 al~~~l~~a~~~gIpVV~~d~~~~~~~--~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~ 160 (336)
T PRK15408 93 GLCPALKRAMQRGVKVLTWDSDTKPEC--RSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTV 160 (336)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCcc--ceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCC
Confidence 24566668889999999887532111 11110 011211 11222332256799999886653
No 225
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=32.87 E-value=1e+02 Score=30.31 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=26.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcC
Q 019556 58 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKG 102 (339)
Q Consensus 58 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~ 102 (339)
.|||+|||+|....++ | .||...+++.++.+.+.
T Consensus 190 ~llfSaHglP~~~~~~----G-------d~Y~~~~~~ta~~l~~~ 223 (322)
T TIGR00109 190 VLLFSAHGLPQSYVDE----G-------DPYPAECEATTRLIAEK 223 (322)
T ss_pred EEEEeCCCCchhHhhC----C-------CChHHHHHHHHHHHHHH
Confidence 7999999999887654 3 47888888887777654
No 226
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=32.80 E-value=55 Score=26.21 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=31.7
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++|+-.+-...-.++|.+.|+.++.|.+++.|-.||-.
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~ 64 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELGV 64 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHHH
Confidence 556666666665544445888999999999999999988854
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.56 E-value=3.1e+02 Score=24.89 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=46.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEE-EcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILV-VGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miV-VGG~nSSNT 255 (339)
++|++++=-|+...-++++..+-+. .+. .+....+.=+....-+++++++..+.+|++|| --|++..|.
T Consensus 30 ~~v~lis~D~~R~ga~eQL~~~a~~-----l~v-----p~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 30 KKVALISADTYRIGAVEQLKTYAEI-----LGV-----PFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp --EEEEEESTSSTHHHHHHHHHHHH-----HTE-----EEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred ccceeecCCCCCccHHHHHHHHHHH-----hcc-----ccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 6899999999999999988765543 321 11111112134444566777775456899998 677777666
Q ss_pred HHHHHHH
Q 019556 256 SHLQEIA 262 (339)
Q Consensus 256 ~rL~eia 262 (339)
..+-++.
T Consensus 100 ~~~~el~ 106 (196)
T PF00448_consen 100 ELLEELK 106 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555554
No 228
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.45 E-value=61 Score=29.08 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCCCceEEecccc-cCHHHHHHHHHcCCEE--ecCCccccccc-cccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCc
Q 019556 12 FPEEKIWITNEII-HNPTVNKRLEEMAVQN--IPVEEGKKQFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCP 87 (339)
Q Consensus 12 ~~~~~Vy~lG~lI-HN~~Vv~~L~~~Gv~~--v~~~~~~~~~~-~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP 87 (339)
..+++|.++|-=- =-.-+...|.++|..+ ++... +++. .+.+-| |||.|-|.|.-+....-+.+.-+||...|
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~~l~~~l~~aD-iVIsat~~~~ii~~~~~~~~~viIDla~p 118 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--KNLKEHTKQAD-IVIVAVGKPGLVKGDMVKPGAVVIDVGIN 118 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--hhHHHHHhhCC-EEEEcCCCCceecHHHccCCeEEEEccCC
Confidence 3467888887610 1223678899999653 33211 1222 233344 88999998764333444567888999988
Q ss_pred chHH
Q 019556 88 WVSK 91 (339)
Q Consensus 88 ~V~k 91 (339)
..--
T Consensus 119 rdvd 122 (168)
T cd01080 119 RVPD 122 (168)
T ss_pred Cccc
Confidence 7543
No 229
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.10 E-value=3.6e+02 Score=23.89 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=46.0
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++... +...-|..+.+-+++. .++++- ++.++++ ....+.|. .++.+.+..+|.+|+.+.. ++ +..
T Consensus 2 I~vi~~~-~~~~~~~~~~~g~~~~-a~~~g~-----~~~~~~~--~~~~~~~~~~i~~~~~~~vdgiii~~~~-~~-~~~ 70 (268)
T cd06289 2 IGLVIND-LTNPFFAELAAGLEEV-LEEAGY-----TVFLANS--GEDVERQEQLLSTMLEHGVAGIILCPAA-GT-SPD 70 (268)
T ss_pred EEEEecC-CCcchHHHHHHHHHHH-HHHcCC-----eEEEecC--CCChHHHHHHHHHHHHcCCCEEEEeCCC-Cc-cHH
Confidence 3455533 3344566666666543 222321 2222211 11123343 3445545679999999753 22 223
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
.++.+++.|.|...+.+.
T Consensus 71 ~~~~~~~~~ipvV~~~~~ 88 (268)
T cd06289 71 LLKRLAESGIPVVLVARE 88 (268)
T ss_pred HHHHHHhcCCCEEEEecc
Confidence 566677888999888765
No 230
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=32.03 E-value=1.4e+02 Score=24.04 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCEEecCCccc--c------------c---cccccCCCEEEECCCCCCHH-HHHHHHh
Q 019556 28 TVNKRLEEMAVQNIPVEEGK--K------------Q---FDVVNKGDVVVLPAFGAAVE-EMVTLNN 76 (339)
Q Consensus 28 ~Vv~~L~~~Gv~~v~~~~~~--~------------~---~~~~~~g~~VIIrAHGv~~~-~~~~l~~ 76 (339)
.|.+.|+++|-.+++-.... . + +.+.. ....||.|+|-+++ +.+++++
T Consensus 12 ~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~-~~~pVInA~G~T~eEI~~~v~~ 77 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTS-TKVPVINASGLTAEEIVQEVEE 77 (80)
T ss_pred HHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccc-cCceEEecCCCCHHHHHHHHHH
Confidence 47788999998888632110 0 1 11111 22468999998887 4555554
No 231
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=32.00 E-value=72 Score=31.50 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=31.6
Q ss_pred HHHhcCCcEEeCC----------CcchHHHHHHHHHHhcCCCeEEEEe
Q 019556 73 TLNNKNVQIVDTT----------CPWVSKVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 73 ~l~~~g~~iiDaT----------CP~V~kv~~~~~~~~~~Gy~iIIiG 110 (339)
.+++.|+.+||.| ||-.+.+.+++++|.++||-+++.|
T Consensus 114 iiR~~GvplV~G~IPGva~ivG~a~~~e~~~~I~~e~q~r~~lv~l~G 161 (287)
T cd01917 114 IVRGLGIKMVDWTIPGEAVILGRAKDSKALKKIVDDLMGRGFMLFLCD 161 (287)
T ss_pred HHHHcCCceecCCCCeEEEEEecCCChHHHHHHHHHHHHCCcEEEEec
Confidence 3456677787776 4577899999999999999999999
No 232
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=31.97 E-value=43 Score=31.81 Aligned_cols=54 Identities=9% Similarity=0.163 Sum_probs=41.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-++.+.||-|+...-. +.+++|. .+-++..|||+.+|..+..+..+++ .+.+..
T Consensus 41 i~l~~~D~~~~p~~a~-~~a~~Li-~~~~v~aviG~~~s~~a~a~~~~~~-~~vp~i 94 (333)
T cd06358 41 VELVIVDDGSPPAEAA-AAAARLV-DEGGVDAIIGWHTSAVRNAVAPVVA-GRVPYV 94 (333)
T ss_pred EEEEEECCCCChHHHH-HHHHHHH-HhCCCcEEEecCcHHHHHHHHHHHh-cCceEE
Confidence 4567889999876655 5667886 4556888899999999999999997 655544
No 233
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=31.88 E-value=55 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=0.0
Q ss_pred cccCCCEE-EECCCCCCHH---HHHHHHhcCCcEE
Q 019556 52 VVNKGDVV-VLPAFGAAVE---EMVTLNNKNVQIV 82 (339)
Q Consensus 52 ~~~~g~~V-IIrAHGv~~~---~~~~l~~~g~~ii 82 (339)
.+.+||++ +|++.|-+|. ..+.++++|+.+|
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vI 134 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVI 134 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEE
No 234
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=31.86 E-value=25 Score=27.46 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.7
Q ss_pred EEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC
Q 019556 58 VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG 125 (339)
Q Consensus 58 ~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~ 125 (339)
-+|+=.||...-.- +-+..|+.++++||.|+.+=.++|-...|..|+.+
T Consensus 17 ~~v~i~HG~~eh~~-------------------ry~~~a~~L~~~G~~V~~~D~rGhG~S~g~rg~~~ 65 (79)
T PF12146_consen 17 AVVVIVHGFGEHSG-------------------RYAHLAEFLAEQGYAVFAYDHRGHGRSEGKRGHID 65 (79)
T ss_pred EEEEEeCCcHHHHH-------------------HHHHHHHHHHhCCCEEEEECCCcCCCCCCcccccC
Confidence 36666899854432 33446899999999999999999999998777654
No 235
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=31.79 E-value=2.6e+02 Score=27.80 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=44.9
Q ss_pred ceEEEEEccCCChH-HHHHHHHHHHHHHhhhccccccccccccccc-ccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNT-ICDATQERQD-AMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nT-IC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|...++... .++.+.+.|++. ..++.+|+. --+.|.+-=+ .++.+...++|++|=|||=..-
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~----------~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~i 96 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAA----------GIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSM 96 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHH
Confidence 58888887654332 467777666541 112223321 1222222222 2222323579999999999999
Q ss_pred chHHHHHHHH
Q 019556 254 NTSHLQEIAE 263 (339)
Q Consensus 254 NT~rL~eia~ 263 (339)
.+-|...+.-
T Consensus 97 D~aK~ia~~~ 106 (376)
T cd08193 97 DVAKLVAVLA 106 (376)
T ss_pred HHHHHHHHHH
Confidence 9999876654
No 236
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=31.73 E-value=1.1e+02 Score=26.96 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCC---ceeeCCCC--ccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIP---SYWIDSEK--RIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~---ty~Ie~~~--el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 314 (339)
..++-...+.. =.+..-+..++++.+.+ +++|++-- |+..- .. .|..+|+|+.|..
T Consensus 80 ~~gl~~~~~~~-KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA----------------~~--aGi~~i~v~~g~~ 140 (170)
T TIGR01668 80 ALGIPVLPHAV-KPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG----------------NR--NGSYTILVEPLVH 140 (170)
T ss_pred HcCCEEEcCCC-CCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH----------------HH--cCCeEEEEccCcC
Confidence 45554444422 23455666777777643 78888763 66440 11 4889999999999
Q ss_pred CcHHHHHHHHHHHHhh
Q 019556 315 TPDKAVEDVLKKVFEI 330 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~ 330 (339)
+.+++...++.+++.+
T Consensus 141 ~~~~~~~~~~~~~~~~ 156 (170)
T TIGR01668 141 PDQWFIKRIWRRVERT 156 (170)
T ss_pred CccccchhhHHHHHHH
Confidence 9998888888887764
No 237
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=31.66 E-value=47 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=23.8
Q ss_pred EEeCCCcchHHHHHHHHHHhcCC-CeEEEE
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGD-YTSIIH 109 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~G-y~iIIi 109 (339)
..|-+|||=+|.|..++.+.+.| .++.++
T Consensus 124 FtDp~CpyC~kl~~~l~~~~~~g~V~v~~i 153 (251)
T PRK11657 124 FADPNCPYCKQFWQQARPWVDSGKVQLRHI 153 (251)
T ss_pred EECCCChhHHHHHHHHHHHhhcCceEEEEE
Confidence 37999999999999999988887 455444
No 238
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=31.60 E-value=55 Score=31.72 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=42.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-++.+.||=|....-.+.+.+-+.. -.+..|||+..|+-+.-...++.+.+.+..
T Consensus 42 l~~~~~D~~~~~~~a~~~a~~l~~~--~~v~aiiG~~~s~~~~a~~~~~~~~~ip~I 96 (389)
T cd06352 42 FTFVYLDTECSESVALLAAVDLYWE--HNVDAFIGPGCPYACAPVARLAAHWNIPMI 96 (389)
T ss_pred EEEEEecCCCchhhhHHHHHHHHhh--cCCcEEECCCChhHHHHHHHHHhcCCCCEe
Confidence 3567889999887777777666542 245568899999999999999998887754
No 239
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.52 E-value=2.9e+02 Score=26.54 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=48.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEE-EcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILV-VGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miV-VGG~nSSNT 255 (339)
++++++.--|+.....+++..+.+. .+ ..+...++-.+....+.+++..+.....|++|| -+|..+.|+
T Consensus 101 ~~V~li~~D~~r~~a~~ql~~~~~~-----~~-----i~~~~~~~~~dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~ 170 (272)
T TIGR00064 101 KSVLLAAGDTFRAAAIEQLEEWAKR-----LG-----VDVIKQKEGADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKV 170 (272)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHh-----CC-----eEEEeCCCCCCHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchH
Confidence 5899999888888777777666543 11 112222333445555556665543356898888 777777788
Q ss_pred HHHHHHHH
Q 019556 256 SHLQEIAE 263 (339)
Q Consensus 256 ~rL~eia~ 263 (339)
..+-|+.+
T Consensus 171 ~~~~el~~ 178 (272)
T TIGR00064 171 NLMDELKK 178 (272)
T ss_pred HHHHHHHH
Confidence 76655553
No 240
>PRK12435 ferrochelatase; Provisional
Probab=31.42 E-value=1.1e+02 Score=30.14 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=43.7
Q ss_pred ceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHH
Q 019556 16 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 95 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~ 95 (339)
++.+..+---+|..++.|.++=-..+... . ..-.+...+||+|||+|....+ +| .||-..++..
T Consensus 139 ~~~~i~~~~~~p~yi~a~a~~I~~~l~~~----~-~~~~~~~~llfSaHslP~~~i~----~G-------DpY~~q~~~t 202 (311)
T PRK12435 139 TITSIESWYDEPKFIQYWADQIKETFAQI----P-EEEREKAVLIVSAHSLPEKIIA----AG-------DPYPDQLEET 202 (311)
T ss_pred eEEEeCCccCChHHHHHHHHHHHHHHHHc----C-cccccceEEEEecCCCchhHhh----CC-------CCHHHHHHHH
Confidence 45566666667777777765411111110 0 0001234799999999998765 23 5999998888
Q ss_pred HHHHhcC
Q 019556 96 VEKHKKG 102 (339)
Q Consensus 96 ~~~~~~~ 102 (339)
++..++.
T Consensus 203 ~~~v~~~ 209 (311)
T PRK12435 203 ADLIAEQ 209 (311)
T ss_pred HHHHHHH
Confidence 8877654
No 241
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.36 E-value=66 Score=25.98 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred ccccCCCE-EEECCCCCCHHH---HHHHHhcCCcEEeCCCcchHHHHHHH
Q 019556 51 DVVNKGDV-VVLPAFGAAVEE---MVTLNNKNVQIVDTTCPWVSKVWTSV 96 (339)
Q Consensus 51 ~~~~~g~~-VIIrAHGv~~~~---~~~l~~~g~~iiDaTCP~V~kv~~~~ 96 (339)
..+.++|. ++|+..|-+++. .+.|+++|..+|--||.--..+.+.+
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 34445664 578889999875 55777788888888877766665444
No 242
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=31.31 E-value=1.1e+02 Score=27.61 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 229 RQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 229 RQ~a~~~la~~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
..++++.+. +.|++||||- -.-.+...|.+.+++.+.+.+.|.-..
T Consensus 160 ~~~~~~~~~--~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~ 206 (222)
T cd00296 160 FDRALEALL--EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREP 206 (222)
T ss_pred HHHHHHHHh--cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCC
Confidence 556666664 5899999997 566788999999988888888886543
No 243
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.06 E-value=1.1e+02 Score=30.02 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHHhhhhCCcEEEEE----cCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 230 QDAMYKMVEEKVDLILVV----GGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 230 Q~a~~~la~~~vD~miVV----GG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
++.++++. ..+|.++|+ ||..|.=+..|++++++.+..+|-|=+
T Consensus 75 ~~~I~~~l-e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt 122 (303)
T cd02191 75 QEAIDNIP-VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVT 122 (303)
T ss_pred HHHHHHHH-cCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEe
Confidence 44567776 579999987 678899999999999999888877755
No 244
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=31.00 E-value=57 Score=32.20 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=37.0
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
++.+.|+-|..+.. +..+...+=.+..|||+.+|+-+.-...+|...+.|..
T Consensus 43 ~~~~~d~~~~~~~a----~~~~~~~~~~V~aviGp~~S~~~~a~a~va~~~~iP~I 94 (382)
T cd06371 43 DYVLLPEPCETSRA----LAAFLGYEGYASAFVGPVNPGYCEAAALLAKEWDKALF 94 (382)
T ss_pred EEEEecCCCChhHH----HHHHHcccCCceEEECCCCchHHHHHHHHHHhcCceEE
Confidence 46678999986532 22222111257788999999999999999999987754
No 245
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=30.99 E-value=3.5e+02 Score=24.37 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=48.8
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHH--HHHHH-HHHHHhhhhCCcEEEEEcCCCC---
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDA--TQERQ-DAMYKMVEEKVDLILVVGGWNS--- 252 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~A--T~~RQ-~a~~~la~~~vD~miVVGG~nS--- 252 (339)
|+++.. +++-.-|..+.+-+.+.+.+. +- .+. +|+. ..++| +.++.|.+..+|.+|+.++..+
T Consensus 2 igvv~~-~~~~~~~~~~~~gi~~~~~~~-g~-----~~~----~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~ 70 (273)
T cd01541 2 IGVITT-YISDYIFPSIIRGIESVLSEK-GY-----SLL----LASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN 70 (273)
T ss_pred eEEEeC-CccchhHHHHHHHHHHHHHHc-CC-----EEE----EEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence 455554 345566777777776543322 21 122 2322 23444 4455666678999999876432
Q ss_pred cchHHHHHHHHHhCCCceeeCCC
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.+...+ +-+++.+.|...+.+.
T Consensus 71 ~~~~~~-~~~~~~~ipvV~~~~~ 92 (273)
T cd01541 71 PNIDLY-LKLEKLGIPYVFINAS 92 (273)
T ss_pred ccHHHH-HHHHHCCCCEEEEecC
Confidence 233334 4457788899888765
No 246
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.87 E-value=3e+02 Score=25.15 Aligned_cols=87 Identities=15% Similarity=0.094 Sum_probs=50.1
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
+||++++ ++-.-|..+...+.+...+ .+ .++.+.+ ++...++| +.++.+.+..+|.+|+.+. .+.-...
T Consensus 2 ~~~~~~~-~~~~f~~~~~~gi~~~~~~-~G-----~~~~~~~--~~~d~~~~~~~i~~~~~~~vdgiii~~~-~~~~~~~ 71 (272)
T cd06313 2 AAFSNIG-LQATWCAQGKQAADEAGKL-LG-----VDVTWYG--GALDAVKQVAAIENMASQGWDFIAVDPL-GIGTLTE 71 (272)
T ss_pred cceeecc-cCChHHHHHHHHHHHHHHH-cC-----CEEEEec--CCCCHHHHHHHHHHHHHcCCCEEEEcCC-ChHHhHH
Confidence 4566655 4555677777766653222 22 2233332 23344566 3444555678999999753 2222345
Q ss_pred HHHHHHHhCCCceeeCCC
Q 019556 258 LQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~ 275 (339)
+++-+.+.+.|...+.+.
T Consensus 72 ~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 72 AVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHCCCcEEEeCCC
Confidence 556666788999888764
No 247
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=30.86 E-value=52 Score=32.45 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=59.8
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC-CCCccCC----CCcchhhh--
Q 019556 216 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID-SEKRIGP----GNKIAYKL-- 288 (339)
Q Consensus 216 ~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie-~~~el~~----~~~~~~~~-- 288 (339)
+...|+ +++..- .+++++|. .+ ++..|+|+..|+.+..+.+++++.+.+-+... +..+|.. .+.++...
T Consensus 37 lv~~D~-~~p~~a-~~~a~~Li-~~-~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~~ 112 (347)
T TIGR03863 37 LDEVAV-RTPEDL-VAALKALL-AQ-GVRFFVLDLPAAALLALADAAKAKGALLFNAGAPDDALRGADCRANLLHTLPSR 112 (347)
T ss_pred EEEccC-CCHHHH-HHHHHHHH-HC-CCCEEEecCChHHHHHHHHHHHhCCcEEEeCCCCChHHhCCCCCCCEEEecCCh
Confidence 344454 554443 45566776 33 57778999999999999999999876654332 2333421 12222211
Q ss_pred -ccchhhhhhcccc-CCCcEEEEeecCCCcHHHH-HHHHHHHHh
Q 019556 289 -MHGELVEKENWLP-KGQITIGITSGASTPDKAV-EDVLKKVFE 329 (339)
Q Consensus 289 -~~~~~~~~~~wl~-~~~~~VGITAGASTP~~lI-~eVi~~l~~ 329 (339)
+.+.. -..|+. .+.++|.|...-+.-..-. +.+...+++
T Consensus 113 ~~~~~a--la~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~ 154 (347)
T TIGR03863 113 AMLADA--LAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKR 154 (347)
T ss_pred HhHHHH--HHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 22222 223441 2568888887655444433 444444443
No 248
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.82 E-value=51 Score=32.11 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=40.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
-++.+.||-|+...-+ +++++|. .+ |-+.+|+|..|+.+..+..++++.+.+.+...
T Consensus 41 ielv~~D~~~~p~~a~-~~a~~Li-~~-~~V~~i~~~~S~~~~a~~~~~~~~~vp~i~~~ 97 (351)
T cd06334 41 LEWEECDTGYEVPRGV-ECYERLK-GE-DGAVAFQGWSTGITEALIPKIAADKIPLMSGS 97 (351)
T ss_pred EEEEEecCCCCcHHHH-HHHHHHh-cc-CCcEEEecCcHHHHHHhhHHHhhcCCcEEecc
Confidence 3567888888765544 4677776 33 44445567889999999999999987765444
No 249
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=30.80 E-value=1.5e+02 Score=27.18 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=46.3
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCcc-ccccc-----cc-cCCCEEEECCCCCCHHHHHHHHhcCCcE-----
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG-KKQFD-----VV-NKGDVVVLPAFGAAVEEMVTLNNKNVQI----- 81 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~-~~~~~-----~~-~~g~~VIIrAHGv~~~~~~~l~~~g~~i----- 81 (339)
+.++|+.|+ ..-+.|++.|+..+-..++ .+.|- .. +.+.++++|+-+-.+...+.|+++|+.|
T Consensus 75 ~~~~~aVG~-----~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~v 149 (240)
T PRK09189 75 ALPLFAVGE-----ATAEAARELGFRHVIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAEC 149 (240)
T ss_pred CCeEEEEcH-----HHHHHHHHcCCCCCcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEE
Confidence 457999996 4558899999874321111 11111 11 2345679999999999999999999765
Q ss_pred EeCCCcc
Q 019556 82 VDTTCPW 88 (339)
Q Consensus 82 iDaTCP~ 88 (339)
+++.|+-
T Consensus 150 Y~~~~~~ 156 (240)
T PRK09189 150 YDMLPVM 156 (240)
T ss_pred EEeecCC
Confidence 6665553
No 250
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=30.66 E-value=1.8e+02 Score=28.43 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=50.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
+++.+|.-.+....-++.+.+.|++. + + ...+. ...=+..+-+|-- +.+...++|++|-|||=..-.+-
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~-----~-~--~~~~~-~~~~~~~~v~~~~--~~~~~~~~d~iIaiGGGs~~D~a 94 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDE-----G-E--VDVVI-VEDATYEEVEKVE--SSARDIGADFVIGVGGGRVIDVA 94 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhc-----C-C--eEEEE-eCCCCHHHHHHHH--HHhhhcCCCEEEEeCCchHHHHH
Confidence 57888887666554455565555431 1 0 01121 1111334333332 22222469999999999999999
Q ss_pred HHHHHHHHhCCCceeeCCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~ 276 (339)
|.+-. ..+.|-..|-|..
T Consensus 95 K~~a~--~~~~p~i~iPTT~ 112 (339)
T cd08173 95 KVAAY--KLGIPFISVPTAA 112 (339)
T ss_pred HHHHH--hcCCCEEEecCcc
Confidence 98764 3567777777653
No 251
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=30.61 E-value=3.9e+02 Score=24.56 Aligned_cols=85 Identities=8% Similarity=-0.074 Sum_probs=44.0
Q ss_pred eEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHh---cC-CcE-EeCCCcchHH
Q 019556 17 IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNN---KN-VQI-VDTTCPWVSK 91 (339)
Q Consensus 17 Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~---~g-~~i-iDaTCP~V~k 91 (339)
.|-.----.|+.+.+.|++.|.+++.-.- ...|...-..-| +....+.+.+ .| +.+ -|..-.-+.-
T Consensus 132 ~fR~P~G~~~~~~~~~l~~~Gy~~v~w~v--------~~~Dw~~~~~~~-~~~~~~~v~~~~~~g~IiLlHd~~~~t~~a 202 (224)
T TIGR02884 132 YFRPPRGVFSERTLAYTKELGYYTVFWSL--------AFKDWKVDEQPG-WQYAYKQIMKKIHPGAILLLHAVSKDNAEA 202 (224)
T ss_pred EEeCCCCCcCHHHHHHHHHcCCcEEeccc--------cCcccCCCCCCC-HHHHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 34433345799999999999999874210 011110000001 1112222211 23 222 2332223566
Q ss_pred HHHHHHHHhcCCCeEEEEe
Q 019556 92 VWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 92 v~~~~~~~~~~Gy~iIIiG 110 (339)
+-.++..+.++||+.+-+.
T Consensus 203 L~~ii~~lk~~Gy~fvtl~ 221 (224)
T TIGR02884 203 LDKIIKDLKEQGYTFKSLD 221 (224)
T ss_pred HHHHHHHHHHCCCEEEEhH
Confidence 7788888999999887654
No 252
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.52 E-value=4e+02 Score=23.88 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=45.5
Q ss_pred EEEEEccC--CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHH-hhhhCCcEEEEEcCCCCcch
Q 019556 179 VGIANQTT--MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYK-MVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 179 v~vvsQTT--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~-la~~~vD~miVVGG~nSSNT 255 (339)
|+++.-++ ++-.-|..+.+-+.+.+.+ ++ .++....+=++. +.|..+.+ +.+..+|.+|+.+... .
T Consensus 2 vgv~~~~~~~~~~~~~~~~~~~i~~~~~~-~g-----~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~---~ 70 (268)
T cd06277 2 IGLIASKRILNSPAFYSEIYRAIEEEAKK-YG-----YNLILKFVSDED--EEEFELPSFLEDGKVDGIILLGGIS---T 70 (268)
T ss_pred eEEEEeccccccCCcHHHHHHHHHHHHHH-cC-----CEEEEEeCCCCh--HHHHHHHHHHHHCCCCEEEEeCCCC---h
Confidence 45444332 4555567777666654332 22 122222222333 34444433 4346899999987432 2
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
. .++.+++.+.|...++..
T Consensus 71 ~-~~~~l~~~~ipvV~~~~~ 89 (268)
T cd06277 71 E-YIKEIKELGIPFVLVDHY 89 (268)
T ss_pred H-HHHHHhhcCCCEEEEccC
Confidence 2 244566778898888764
No 253
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=30.52 E-value=50 Score=29.06 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=47.5
Q ss_pred ccCCCEEEECCCCCCHHHHHHHHhc-CCcEEeCCCcchHHHHHHHHHHhcC-CCeEEEEecCCCceeeeecc
Q 019556 53 VNKGDVVVLPAFGAAVEEMVTLNNK-NVQIVDTTCPWVSKVWTSVEKHKKG-DYTSIIHGKYSHEETVATAS 122 (339)
Q Consensus 53 ~~~g~~VIIrAHGv~~~~~~~l~~~-g~~iiDaTCP~V~kv~~~~~~~~~~-Gy~iIIiG~~~HpEv~gi~g 122 (339)
+++|++|+|-+-=......+.|..+ ++.|| ++--..+..+.+. +..+++.|=.-+|+..++.|
T Consensus 17 I~~~~~Ifld~GtT~~~la~~L~~~~~ltVv-------Tnsl~ia~~l~~~~~~~vi~~GG~~~~~~~~~~G 81 (161)
T PF00455_consen 17 IEDGDTIFLDSGTTTLELAKYLPDKKNLTVV-------TNSLPIANELSENPNIEVILLGGEVNPKSLSFVG 81 (161)
T ss_pred CCCCCEEEEECchHHHHHHHHhhcCCceEEE-------ECCHHHHHHHHhcCceEEEEeCCEEEcCCCcEEC
Confidence 4578988888877778888888888 78777 4444455665554 89999999777777777666
No 254
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=30.51 E-value=89 Score=30.67 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEE
Q 019556 175 DLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVV 247 (339)
Q Consensus 175 ~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVV 247 (339)
++.+.++|.=-.-+..+.-.++..+.. +.++.+++ ..++ +--.-.++.+++-.|+ ..||.++|=
T Consensus 129 dl~qy~WihfE~Rnp~etlkM~~~I~~-~N~r~pe~---qrI~----vSvd~en~req~~~l~-am~DyVf~s 192 (308)
T KOG2947|consen 129 DLTQYGWIHFEARNPSETLKMLQRIDA-HNTRQPEE---QRIR----VSVDVENPREQLFQLF-AMCDYVFVS 192 (308)
T ss_pred ccceeeeEEEecCChHHHHHHHHHHHH-hhcCCCcc---ceEE----EEEEecCcHHHHHHHh-hcccEEEEE
Confidence 456888888777777777777777665 22222211 0111 1112346778888998 689999983
No 255
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=30.50 E-value=87 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEE
Q 019556 56 GDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 109 (339)
Q Consensus 56 g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIi 109 (339)
+-.+|.-++|.|.+..+++++.|+.|+ ++|+-+. .++++.+.|-..|++
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~-~~v~s~~----~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVI-PVVASVA----LAKRMEKAGADAVIA 135 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEE-EEcCCHH----HHHHHHHcCCCEEEE
Confidence 434555578999889999999999988 5666654 455666678777765
No 256
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=30.44 E-value=1.1e+02 Score=28.79 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCCC
Q 019556 230 QDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 230 Q~a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
+.+...+ .++|++||||-.-. .-..+|.+.++..|.+...|.-.
T Consensus 169 ~~a~~~~--~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~ 213 (242)
T PRK00481 169 DEAYEAL--EEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLE 213 (242)
T ss_pred HHHHHHH--hcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCC
Confidence 3444555 36899999993322 24568888888888777666544
No 257
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.18 E-value=82 Score=25.35 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=13.2
Q ss_pred cEEEEEcCCC-CcchHHHHH
Q 019556 242 DLILVVGGWN-SSNTSHLQE 260 (339)
Q Consensus 242 D~miVVGG~n-SSNT~rL~e 260 (339)
+..+|+||.+ |.+-..+.+
T Consensus 81 ~~~iv~GG~~~t~~~~~~l~ 100 (121)
T PF02310_consen 81 NIPIVVGGPHATADPEEILR 100 (121)
T ss_dssp TSEEEEEESSSGHHHHHHHH
T ss_pred CCEEEEECCchhcChHHHhc
Confidence 7889999987 555555443
No 258
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=30.18 E-value=1.8e+02 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=15.3
Q ss_pred EEEEEcCCCCcchHHHHHHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAED 264 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~ 264 (339)
+.|+-|+ .+.||+++++...+
T Consensus 2 i~IiY~S-~tGnTe~vA~~Ia~ 22 (167)
T TIGR01752 2 IGIFYGT-DTGNTEGIAEKIQK 22 (167)
T ss_pred EEEEEEC-CCChHHHHHHHHHH
Confidence 3455566 99999999986544
No 259
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=30.10 E-value=78 Score=29.53 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=41.8
Q ss_pred cccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
++.+.||=++....+ +.+++|... .||+ |||+..|+.+..+.+.+++.+.|.....+.
T Consensus 40 ~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 98 (333)
T cd06332 40 EVVVEDDELKPDVAV-QAARKLIEQDKVDV--VVGPVFSNVALAVVPSLTESGTFLISPNAG 98 (333)
T ss_pred EEEEecCCCCHHHHH-HHHHHHHHHcCCcE--EEcCCccHHHHHHHHHHhhcCCeEEecCCC
Confidence 566788888776655 466667533 5665 568878888888999999988887666543
No 260
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.99 E-value=3.3e+02 Score=24.89 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchh-hhhhccccCCCcEEEEe
Q 019556 233 MYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGEL-VEKENWLPKGQITIGIT 310 (339)
Q Consensus 233 ~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~-~~~~~wl~~~~~~VGIT 310 (339)
.+.+.+..+|.+++.+...+ ....+.+++.+.|...+++..+ +...-+.... ..|+. .+- .+..|.++|++.
T Consensus 49 ~~~~~~~~~dgiii~~~~~~---~~~~~~~~~~~ipvV~~~~~~~-~~~~~v~~d~~~~g~~~~~~--L~~~g~~~i~~i 122 (283)
T cd06279 49 SALVVSALVDGFIVYGVPRD---DPLVAALLRRGLPVVVVDQPLP-PGVPSVGIDDRAAAREAARH--LLDLGHRRIGIL 122 (283)
T ss_pred HHHHHhcCCCEEEEeCCCCC---hHHHHHHHHcCCCEEEEecCCC-CCCCEEeeCcHHHHHHHHHH--HHHcCCCcEEEe
Confidence 33444578999999876433 2456667788899998887654 2211011111 11211 111 122478899998
Q ss_pred ecCC
Q 019556 311 SGAS 314 (339)
Q Consensus 311 AGAS 314 (339)
++-.
T Consensus 123 ~~~~ 126 (283)
T cd06279 123 GLRL 126 (283)
T ss_pred cCcc
Confidence 7654
No 261
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=29.72 E-value=96 Score=29.16 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=48.0
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceee----------CCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeec
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWI----------DSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSG 312 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~I----------e~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAG 312 (339)
.+-|-|.+.|.=|.=|-++|+..... |.+ ++++.|.. . .+...+||++|
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~-----------------~---~g~~i~~v~TG 73 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRK-----------------L---PGEPIIGVETG 73 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHh-----------------C---CCCeeEEeccC
Confidence 44555668888888888889887432 322 22222221 1 26889999999
Q ss_pred CCC--cHHHHHHHHHHHHhhhh
Q 019556 313 AST--PDKAVEDVLKKVFEIKR 332 (339)
Q Consensus 313 AST--P~~lI~eVi~~l~~~~~ 332 (339)
-.| |...+.+-++.|..-++
T Consensus 74 ~~CH~da~m~~~ai~~l~~~~~ 95 (202)
T COG0378 74 KGCHLDASMNLEAIEELVLDFP 95 (202)
T ss_pred CccCCcHHHHHHHHHHHhhcCC
Confidence 999 99999999998876544
No 262
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=29.69 E-value=3e+02 Score=26.43 Aligned_cols=90 Identities=12% Similarity=0.176 Sum_probs=51.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++... ++-.-|.++.+-+.+...+ .+ ...+.+.++ ....++|. .+..|.+..+|.+|+.+......
T Consensus 25 ~~Igvv~~~-~~~~f~~~~~~gi~~~a~~-~g----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~- 95 (330)
T PRK15395 25 TRIGVTIYK-YDDNFMSVVRKAIEKDAKA-AP----DVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAA- 95 (330)
T ss_pred ceEEEEEec-CcchHHHHHHHHHHHHHHh-cC----CeEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeccCHHHH-
Confidence 578887754 3445667777666553222 11 112222221 12344553 45556556899999987543223
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
...++.+++.+.|...+.+.
T Consensus 96 ~~~l~~l~~~giPvV~vd~~ 115 (330)
T PRK15395 96 PTVIEKARGQDVPVVFFNKE 115 (330)
T ss_pred HHHHHHHHHCCCcEEEEcCC
Confidence 33445577888999999874
No 263
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=29.66 E-value=93 Score=27.81 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=42.2
Q ss_pred cccccccccHHHHHHHHHHHHhhhh---CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEE---KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~---~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.+.+.|+-|+.. +=..++.+++.. ...+..|+|...|+.+.-+..+|...+.|.+-...
T Consensus 42 ~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~v~aiiG~~~s~~~~~v~~~~~~~~iP~is~~~ 103 (298)
T cd06269 42 GYEIYDSCCSPS-DAFSAALDLCSLLEKSRGVVAVIGPSSSSSAEAVASLLGALHIPQISYSA 103 (298)
T ss_pred eeEEEecCCChH-HHHHHHHHHHhcCCCCCceEEEECCCCchHHHHHHHHhccCCCcEEeccc
Confidence 455677777444 333455566532 25789999999999999999999999888765543
No 264
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=29.63 E-value=77 Score=31.49 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
..|+++++.|-+-.+|.+|||||-.|-.+-+. ++ +.+.+...|-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~--L~-~~gi~vigiP 124 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIARR--LA-DKGLPVVGVP 124 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHHHH--HH-hcCCCEEeec
Confidence 57888888887678999999999999866642 23 2456666653
No 265
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=29.52 E-value=3.1e+02 Score=22.33 Aligned_cols=39 Identities=8% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHH
Q 019556 27 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL 74 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l 74 (339)
..+...|.++|...+++. .+.|.+||.+=+|...-.++.
T Consensus 17 e~i~~~l~~~G~~~~~~~---------e~AD~iiiNTC~V~~~Ae~k~ 55 (98)
T PF00919_consen 17 ERIASILQAAGYEIVDDP---------EEADVIIINTCTVRESAEQKS 55 (98)
T ss_pred HHHHHHHHhcCCeeeccc---------ccCCEEEEEcCCCCcHHHHHH
Confidence 456788999999988752 245789999988877665544
No 266
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.40 E-value=1.9e+02 Score=23.08 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHhhhhCCcEEEEEcCCCCcchHH-HHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEE
Q 019556 231 DAMYKMVEEKVDLILVVGGWNSSNTSH-LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 309 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~nSSNT~r-L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGI 309 (339)
+.++.|. +.+-++++|--+|.+.-+ +....+..|++++.+.+.++.... ..-++.+.-.|.|
T Consensus 5 ~~~~~i~--~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~i~i 67 (139)
T cd05013 5 KAVDLLA--KARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMS---------------AANLTPGDVVIAI 67 (139)
T ss_pred HHHHHHH--hCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHH---------------HHcCCCCCEEEEE
Confidence 4555664 468899999888877664 444555677778777665543220 0001234456777
Q ss_pred eecCCCcH
Q 019556 310 TSGASTPD 317 (339)
Q Consensus 310 TAGASTP~ 317 (339)
+-..+|++
T Consensus 68 S~~g~~~~ 75 (139)
T cd05013 68 SFSGETKE 75 (139)
T ss_pred eCCCCCHH
Confidence 77777753
No 267
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=29.39 E-value=3e+02 Score=24.32 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=26.0
Q ss_pred cCCcEEeCCCcchH--HHHHHHHHHhcCCCeEEEEecCCC
Q 019556 77 KNVQIVDTTCPWVS--KVWTSVEKHKKGDYTSIIHGKYSH 114 (339)
Q Consensus 77 ~g~~iiDaTCP~V~--kv~~~~~~~~~~Gy~iIIiG~~~H 114 (339)
..+-+++++|||+. -+.+.+..+.+.++..++--.+.+
T Consensus 99 d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~ 138 (223)
T cd02513 99 DIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFH 138 (223)
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 35778999999996 455677777666666665544433
No 268
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=29.38 E-value=1.9e+02 Score=30.73 Aligned_cols=44 Identities=7% Similarity=0.027 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 68 VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 68 ~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
......++..|+.+.....|. .| .+.++++.++|+.++.+||.-
T Consensus 433 ~~a~~ia~~lgi~~~~~~~p~-~K-~~~v~~l~~~~~~v~~VGDg~ 476 (562)
T TIGR01511 433 KTAKAVAKELGINVRAEVLPD-DK-AALIKELQEKGRVVAMVGDGI 476 (562)
T ss_pred HHHHHHHHHcCCcEEccCChH-HH-HHHHHHHHHcCCEEEEEeCCC
Confidence 345566666777766555554 22 356777888999999999875
No 269
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=29.35 E-value=4e+02 Score=23.58 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=26.8
Q ss_pred HHHHHh-hhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 231 DAMYKM-VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 231 ~a~~~l-a~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
+.+.++ .++++|.+|+.+.. .|+..+ +.+++.+.|...+...
T Consensus 49 ~~~~~~~~~~~vdgiii~~~~--~~~~~~-~~~~~~~ipvV~~~~~ 91 (268)
T cd06271 49 EVYRRLVESGLVDGVIISRTR--PDDPRV-ALLLERGFPFVTHGRT 91 (268)
T ss_pred HHHHHHHHcCCCCEEEEecCC--CCChHH-HHHHhcCCCEEEECCc
Confidence 445554 33579999998763 233444 4456778898888654
No 270
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=29.27 E-value=1.3e+02 Score=30.11 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHcCCEEe-cCCcccc-ccc-cccCCCEEEECCCCCCHHHHHHHHhcCCcE-EeCCCcchHHHHHHHHH
Q 019556 25 HNPTVNKRLEEMAVQNI-PVEEGKK-QFD-VVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEK 98 (339)
Q Consensus 25 HN~~Vv~~L~~~Gv~~v-~~~~~~~-~~~-~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~ 98 (339)
-||.+++.|.+.|..+- .+..+.+ .+. .+ +++.+++...+-+++.++.+.+.|+.| +|.-.-+ .++.+.+++
T Consensus 38 ~~~~il~~l~~~G~g~DvaS~~El~~al~~G~-~~~~Ii~~gp~K~~~~L~~ai~~gv~i~iDS~~El-~~i~~~a~~ 113 (379)
T cd06836 38 PLVPVLRLLAEAGAGAEVASPGELELALAAGF-PPERIVFDSPAKTRAELREALELGVAINIDNFQEL-ERIDALVAE 113 (379)
T ss_pred CCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCC-ChhhEEEeCCCCCHHHHHHHHHCCCEEEECCHHHH-HHHHHHHHH
Confidence 46779999999887641 1111111 011 12 356799999999999999999999865 5544333 445544444
No 271
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=29.23 E-value=1.4e+02 Score=28.12 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=40.4
Q ss_pred ECCCCCCHHHH-HHHHhcCCcEEe--CCCcchHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 61 LPAFGAAVEEM-VTLNNKNVQIVD--TTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 61 IrAHGv~~~~~-~~l~~~g~~iiD--aTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
...|+++.+.. .++++.|+.++- ..|+.-..+.+..+-+.+-|...|+.|+-.
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 47799999865 678889999765 777766666666666666699999999754
No 272
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=29.22 E-value=72 Score=34.56 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=78.8
Q ss_pred ecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHH
Q 019556 20 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKH 99 (339)
Q Consensus 20 lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~ 99 (339)
||=|--|+...+.+++-|+.++.. +.+. |||-|--..-+..+.+.|+-+|=.+---+...-..+...
T Consensus 82 YGFLSENa~FA~a~~~aGlvfIGP----------~~~a---I~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A 148 (645)
T COG4770 82 YGFLSENADFAQAVEDAGLVFIGP----------SAGA---IRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIA 148 (645)
T ss_pred ccccccCHHHHHHHHHCCcEEECC----------CHHH---HHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHH
Confidence 788999999999999999999974 2344 888888888888999999999988888888888888888
Q ss_pred hcCCCeEEEEecCCCceeeeeccccCcE-EEEcChHHHHHh
Q 019556 100 KKGDYTSIIHGKYSHEETVATASFAGKY-IIVKNMKEAEYV 139 (339)
Q Consensus 100 ~~~Gy~iIIiG~~~HpEv~gi~g~~~~~-~vv~~~~e~~~~ 139 (339)
.+=||.|+| |+-.|=.++. =++.+++|+...
T Consensus 149 ~eiGyPVlI---------KAsaGGGGKGMRvv~~~~e~~e~ 180 (645)
T COG4770 149 EEIGYPVLI---------KASAGGGGKGMRVVETPEEFAEA 180 (645)
T ss_pred HhcCCcEEE---------EeccCCCCCceEeecCHHHHHHH
Confidence 888999987 3344433444 577888887654
No 273
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=29.21 E-value=18 Score=26.50 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=10.2
Q ss_pred EcCCCCcchHHH
Q 019556 247 VGGWNSSNTSHL 258 (339)
Q Consensus 247 VGG~nSSNT~rL 258 (339)
+-.+||.||.+|
T Consensus 21 ~~dYnShNT~rL 32 (48)
T PF08485_consen 21 VEDYNSHNTERL 32 (48)
T ss_pred ccccCCCCcccc
Confidence 467999999987
No 274
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=28.90 E-value=2e+02 Score=27.78 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=35.6
Q ss_pred EEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEEe
Q 019556 59 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 59 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG 110 (339)
=++||+ .|..+.++|+++.-.++|+. .+...++.++||.=|||-
T Consensus 37 dvfrAf-TS~kIIkkLK~rdgi~~dTP-------~~aL~klk~~gy~eviiQ 80 (265)
T COG4822 37 DVFRAF-TSRKIIKKLKERDGIDFDTP-------IQALNKLKDQGYEEVIIQ 80 (265)
T ss_pred HHHHHH-hHHHHHHHHHhhcCcccCCH-------HHHHHHHHHccchheeee
Confidence 468887 57788999999988888885 566788999999977764
No 275
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=28.79 E-value=1.2e+02 Score=28.25 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=40.6
Q ss_pred ccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
.++.+.|+-|+.... ++.+++|... .||+ |||...|+++..+++++++.+.|...+....
T Consensus 40 i~l~~~d~~~~~~~a-~~~~~~li~~~~v~~--vig~~~s~~~~~~~~~~~~~~vP~v~~~~~~ 100 (312)
T cd06333 40 VELIVLDDGSDPTKA-VTNARKLIEEDKVDA--IIGPSTTPATMAVAPVAEEAKTPMISLAPAA 100 (312)
T ss_pred EEEEEecCCCCHHHH-HHHHHHHHhhCCeEE--EECCCCCHHHHHHHHHHHhcCCCEEEccCCc
Confidence 355677777765433 2455666522 4555 5677778888888899989998888777644
No 276
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=28.63 E-value=3e+02 Score=27.26 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=45.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccc-cHHHHHHHHHHHHhh-hhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI-CDATQERQDAMYKMV-EEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI-C~AT~~RQ~a~~~la-~~~vD~miVVGG~nSSN 254 (339)
+++.+|+-.+.. ....+.+.|++ . ...+.+|+.+ .+.|.+.=+++.+++ ...+|++|-|||=.+-.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~-----~-----~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D 91 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKP-----L-----GTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLD 91 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHH-----c-----CCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHH
Confidence 578888754443 34455555543 1 1223445444 355555444444444 24689999999999999
Q ss_pred hHHHHHHHHH
Q 019556 255 TSHLQEIAED 264 (339)
Q Consensus 255 T~rL~eia~~ 264 (339)
+-|...+.-.
T Consensus 92 ~aK~ia~~~~ 101 (367)
T cd08182 92 TAKALAALLG 101 (367)
T ss_pred HHHHHHHHHh
Confidence 9998776543
No 277
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=28.62 E-value=52 Score=31.60 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=15.9
Q ss_pred eEEEEEccC--CChHHHHHHHHHHHH
Q 019556 178 KVGIANQTT--MLKGETEEIGKLVEK 201 (339)
Q Consensus 178 ~v~vvsQTT--~~~~~~~~i~~~l~~ 201 (339)
||+++..+. -..+.+.++.++|++
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~ 26 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLE 26 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHh
Confidence 466777666 345667777777776
No 278
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.36 E-value=87 Score=30.84 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
..++.+++.|-...+|.+++|||-.|-.+-+. +++..+.+...|
T Consensus 78 ~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~--L~e~~~i~vigi 121 (301)
T TIGR02482 78 EGRQKAVENLKKLGIEGLVVIGGDGSYTGAQK--LYEEGGIPVIGL 121 (301)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHH--HHHhhCCCEEee
Confidence 45777777776678999999999988766532 233345555444
No 279
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.27 E-value=1.9e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=27.7
Q ss_pred CC-CCHHHHHHHHhcCC-cEEeCCCcchHHHHHHHHHH
Q 019556 64 FG-AAVEEMVTLNNKNV-QIVDTTCPWVSKVWTSVEKH 99 (339)
Q Consensus 64 HG-v~~~~~~~l~~~g~-~iiDaTCP~V~kv~~~~~~~ 99 (339)
-| .|++.+++|++.|+ .++..-+|...-+....+..
T Consensus 90 GG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 90 GGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred eCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 44 67778999999999 67888888877777666544
No 280
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=28.13 E-value=1e+02 Score=30.20 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=50.1
Q ss_pred EEEEEcCCCCcchHHHH--HHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 243 LILVVGGWNSSNTSHLQ--EIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~--eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
-++||.+--|.||.+.+ .+|+..++|-+.+.+.++|.. ..| - +....||||-=-+--..-.
T Consensus 150 kLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~---AIG-------------k-ktraVVAItdV~~EDk~~l 212 (266)
T PTZ00365 150 KLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGK---LVH-------------Q-KTAAVVAIDNVRKEDQAEF 212 (266)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHH---HhC-------------C-CCceEEEecccCHHHHHHH
Confidence 46678888899999875 999999999999999999965 110 0 2357888887555555555
Q ss_pred HHHHHHHHh
Q 019556 321 EDVLKKVFE 329 (339)
Q Consensus 321 ~eVi~~l~~ 329 (339)
+.+++.++.
T Consensus 213 ~~lv~~~~~ 221 (266)
T PTZ00365 213 DNLCKNFRA 221 (266)
T ss_pred HHHHHHHHH
Confidence 555555544
No 281
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=27.96 E-value=81 Score=33.02 Aligned_cols=41 Identities=7% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCC
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGI 267 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~ 267 (339)
.++++.++.|..-.+|.+++|||-.|-.+- +|++-++++|.
T Consensus 163 ~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~ 204 (459)
T PTZ00286 163 FDPKVMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKL 204 (459)
T ss_pred hhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCC
Confidence 367777777766789999999999998766 78888888773
No 282
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=27.87 E-value=64 Score=32.01 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=41.1
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 216 FISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 216 ~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
+...++.|+..+-=+ ++.+|. .+ .+.-|+|...|+++..+..+|.+.+.|-...
T Consensus 39 ~v~~dd~~d~~~a~~-~~c~Li-~~-gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~ 92 (363)
T cd06381 39 SISFIDLNNHFDAVQ-EACDLM-NQ-GILALVTSTGCASAIALQSLTDAMHIPHLFI 92 (363)
T ss_pred eeEeecCCChHHHHH-HHHHHH-hc-CcEEEEecCChhHHHHHHHHhhCCCCCEEEe
Confidence 344677777765544 445555 45 8999999999999999999999998876554
No 283
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.52 E-value=2.5e+02 Score=22.33 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCEEecC--Ccccc--c--c-ccccCCCEEEEC----CCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHH
Q 019556 27 PTVNKRLEEMAVQNIPV--EEGKK--Q--F-DVVNKGDVVVLP----AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTS 95 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~--~~~~~--~--~-~~~~~g~~VIIr----AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~ 95 (339)
++..+.+++.|..++-. ..+.. . + ..+..-|.||+. +|+....+.+.+++.|+.++=+-..=+..+.+.
T Consensus 13 ~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~ 92 (97)
T PF10087_consen 13 RRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERA 92 (97)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 45667788899887754 11111 1 2 234445666664 688888899999999999986665555565555
Q ss_pred HHH
Q 019556 96 VEK 98 (339)
Q Consensus 96 ~~~ 98 (339)
..+
T Consensus 93 l~~ 95 (97)
T PF10087_consen 93 LER 95 (97)
T ss_pred HHh
Confidence 544
No 284
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=27.25 E-value=1.1e+02 Score=28.62 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=42.1
Q ss_pred cccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++.+.||-+.....+ +++++|.. ..||+ |||+..|+.+..+.+++++.+.|........
T Consensus 40 ~l~~~D~~~~~~~~~-~~~~~lv~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~~~~~~ 99 (336)
T cd06360 40 EFVVEDDEAKPDVAV-EKARKLIEQDKVDV--VVGPVHSGEALAMVKVLREPGTPLINPNAGA 99 (336)
T ss_pred EEEEcCCCCChHHHH-HHHHHHHHHhCCcE--EEccCccHhHHHHHHHHHhcCceEEecCCCC
Confidence 456778888765544 66667753 35766 6788888888889999988888877665443
No 285
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=27.25 E-value=5.3e+02 Score=24.26 Aligned_cols=124 Identities=23% Similarity=0.243 Sum_probs=62.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..++++.- .++-.-|..+.+-+.+...+ .+ .++.++. +....++|. .++.|....+|.+|+.++.. +
T Consensus 60 ~~i~vi~~-~~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~i~~l~~~~vdgiii~~~~~---~ 127 (341)
T PRK10703 60 KSIGLLAT-SSEAPYFAEIIEAVEKNCYQ-KG-----YTLILCN--AWNNLEKQRAYLSMLAQKRVDGLLVMCSEY---P 127 (341)
T ss_pred CeEEEEeC-CCCCchHHHHHHHHHHHHHH-CC-----CEEEEEe--CCCCHHHHHHHHHHHHHcCCCEEEEecCCC---C
Confidence 46777763 34455567776666553222 22 1222222 122234453 34445556799999998643 2
Q ss_pred HHHHHHHHH-hCCCceeeCCCCc-cC-CCCcchhhhccchh-hhhhccccCCCcEEEEeecCC
Q 019556 256 SHLQEIAED-RGIPSYWIDSEKR-IG-PGNKIAYKLMHGEL-VEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~-~~~~ty~Ie~~~e-l~-~~~~~~~~~~~~~~-~~~~~wl~~~~~~VGITAGAS 314 (339)
...++.+++ .+.|...++...+ .. ...........|.. .+ ..+..|..+|++-+|..
T Consensus 128 ~~~~~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~--~L~~~G~~~i~~i~~~~ 188 (341)
T PRK10703 128 EPLLAMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGR--YLIERGHRDIGVIPGPL 188 (341)
T ss_pred HHHHHHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHH--HHHHCCCCcEEEEeCCc
Confidence 334455556 6889998876431 11 10000000011211 11 22334778899887754
No 286
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=27.02 E-value=60 Score=30.90 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHH
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
...+.+|+|. +..+..+|.+.++.. .+.......+++. +|| . ..-+.||+|++|--.
T Consensus 199 ~~~i~vv~G~-~~~~~~~l~~~~~~~-~~i~~~~~~~~m~------------------~lm-~-~aDl~Is~~G~T~~E 255 (279)
T TIGR03590 199 NISITLVTGS-SNPNLDELKKFAKEY-PNIILFIDVENMA------------------ELM-N-EADLAIGAAGSTSWE 255 (279)
T ss_pred CceEEEEECC-CCcCHHHHHHHHHhC-CCEEEEeCHHHHH------------------HHH-H-HCCEEEECCchHHHH
Confidence 4556665554 445667777777653 3444445555443 466 3 345888898887443
No 287
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=26.98 E-value=85 Score=31.11 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceee
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 272 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~I 272 (339)
...|+++++.|-+..+|.+++|||-.|-.+- +|.| .+.+...|
T Consensus 78 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e----~~i~vigi 121 (317)
T cd00763 78 EEGQAKAIEQLKKHGIDALVVIGGDGSYMGAMRLTE----HGFPCVGL 121 (317)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHH----cCCCEEEe
Confidence 4577888888877789999999997776555 3333 35666554
No 288
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=26.91 E-value=87 Score=36.98 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCC
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGI 267 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~ 267 (339)
.+++++++.+-.-.+|.++||||-.|- +..+|+|-+++.|.
T Consensus 183 e~~~~~le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~ 224 (1328)
T PTZ00468 183 EQMRASLEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSS 224 (1328)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCC
Confidence 345566655544579999999999987 55699998888773
No 289
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=26.84 E-value=1.1e+02 Score=28.21 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=33.3
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
++..|+.-=... -+++.+.+. .+|++||||-.-+ .-..+|.+.+++.|.+...|.-
T Consensus 146 ~Vv~fgE~~p~~--~~~a~~~~~--~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~ 202 (218)
T cd01407 146 DVVFFGESLPEE--LDEAAEALA--KADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINL 202 (218)
T ss_pred CeEECCCCCcHH--HHHHHHHHh--cCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECC
Confidence 455454432222 555666663 5899999993211 1234777777777777766654
No 290
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=26.81 E-value=2.7e+02 Score=26.46 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 186 TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 186 T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
.++.++..++++...+..+.+. -.+.++-|..|.+--+-++....-.+|.++|+--....
T Consensus 50 ~Lt~~Er~~l~~~~~~~~~~~~--------~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~ 109 (289)
T PF00701_consen 50 SLTDEERKELLEIVVEAAAGRV--------PVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFK 109 (289)
T ss_dssp GS-HHHHHHHHHHHHHHHTTSS--------EEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSS
T ss_pred cCCHHHHHHHHHHHHHHccCce--------EEEecCcchhHHHHHHHHHHHhhcCceEEEEecccccc
Confidence 4777777777776655322211 12445666555554444444332347777777654333
No 291
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=26.60 E-value=2.6e+02 Score=26.59 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHHHHcCCEEecCCccccccccccCCCEEEECCCCCC-HHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEEE
Q 019556 31 KRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA-VEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 109 (339)
Q Consensus 31 ~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~-~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIi 109 (339)
+.+++.||.+++- . +.-|+..-.=--.++ .+.|+.+++.+ .+.=+.||-+..+.+..+++.++|+.||.+
T Consensus 14 ~~~~~~~I~vvPl-------~-I~~~~~~y~D~~~i~~~~~y~~~~~~~-~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i 84 (275)
T TIGR00762 14 ELIEEYGITVVPL-------T-VIIDGKTYRDGVDITPEEFYEKLKESK-ELPKTSQPSPGEFLELYEKLLEEGDEVLSI 84 (275)
T ss_pred HHHHHcCCEEEEE-------E-EEECCEEeecCCCCCHHHHHHHHHhcC-CCCCcCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 4556778888751 1 001122221111234 45677776533 355699999999999999999999999888
Q ss_pred ec
Q 019556 110 GK 111 (339)
Q Consensus 110 G~ 111 (339)
.=
T Consensus 85 ~i 86 (275)
T TIGR00762 85 HL 86 (275)
T ss_pred Ec
Confidence 63
No 292
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=26.45 E-value=80 Score=32.14 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 242 DLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 242 D~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
.++.|||+..|+-|..+..+|...+.|-.
T Consensus 117 ~V~aiiGp~~S~~~~ava~~~~~~~iP~I 145 (472)
T cd06374 117 PIVGVIGPGSSSVAIQVQNLLQLFNIPQI 145 (472)
T ss_pred CeEEEECCCcchHHHHHHHHhhhhccccc
Confidence 67889999999999999999999887753
No 293
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=26.43 E-value=2.3e+02 Score=27.75 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=51.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHH-Hhhh---hCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY-KMVE---EKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~-~la~---~~vD~miVVGG~nS 252 (339)
+++.+|+-.+......+.+.+.|++ .+.+ ...+.+.+.-++.|.+-=+++. .+.. .+.|++|.|||=..
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~-----~g~~--~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQA-----LGYN--VLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHh-----cCCc--eeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4777776555444344445554443 1100 0011233444444433332222 2221 23499999999999
Q ss_pred cchHHHHHHHHHhCCCceeeCC
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
-.+-+.+......+.|-+.|-|
T Consensus 94 ~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHccCCCEEEecC
Confidence 9999988765567788888877
No 294
>PRK00865 glutamate racemase; Provisional
Probab=26.39 E-value=4.7e+02 Score=24.77 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCceEEecccccCHH------HHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhc
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPT------VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNK 77 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~------Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~ 77 (339)
...+.++..|+..++-+|+--|.|+ .+..+-...+..+. + ..-|.+||...+.+--.++.|++.
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~---------~-~g~d~iVIaCNTa~~~~l~~lr~~ 89 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLL---------E-YGVKMLVIACNTASAVALPDLRER 89 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHH---------h-CCCCEEEEeCchHHHHHHHHHHHh
Confidence 3455666788888999999999884 12222222222221 1 012568888888876677778764
Q ss_pred CCcEEeCCCcchHHHHHHHHHHhc--CCCeEEEEe
Q 019556 78 NVQIVDTTCPWVSKVWTSVEKHKK--GDYTSIIHG 110 (339)
Q Consensus 78 g~~iiDaTCP~V~kv~~~~~~~~~--~Gy~iIIiG 110 (339)
...|++- +...++.... .+-+|-|+|
T Consensus 90 ------~~iPvig-i~~a~~~a~~~~~~~~igVLa 117 (261)
T PRK00865 90 ------YDIPVVG-IVPAIKPAAALTRNGRIGVLA 117 (261)
T ss_pred ------CCCCEEe-eHHHHHHHHHhcCCCeEEEEE
Confidence 1346666 5555555543 455655555
No 295
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.38 E-value=5.5e+02 Score=25.92 Aligned_cols=96 Identities=9% Similarity=0.115 Sum_probs=54.6
Q ss_pred ceEEecccccCHHHHHHHHH--cCCEEecCCccccccccccCCCEEEECCCCCCHH--HHHHHHhcCCcEEe---C----
Q 019556 16 KIWITNEIIHNPTVNKRLEE--MAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE--EMVTLNNKNVQIVD---T---- 84 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~--~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~--~~~~l~~~g~~iiD---a---- 84 (339)
.|+. -+.-.++...+.|++ .|+.+..... +.+.+.+-|.||++. |+|+. .+..++++|+.|+. .
T Consensus 31 ~v~~-~D~~~~~~~~~~l~~~~~g~~~~~~~~---~~~~~~~~d~vV~sp-~i~~~~p~~~~a~~~~i~i~~~~el~~~~ 105 (448)
T PRK03803 31 PFAV-MDSREQPPGLDTLAREFPDVELRCGGF---DCELLVQASEIIISP-GLALDTPALRAAAAMGIEVIGDIELFARE 105 (448)
T ss_pred eEEE-EeCCCCchhHHHHHhhcCCcEEEeCCC---ChHHhcCCCEEEECC-CCCCCCHHHHHHHHCCCcEEEHHHHHHHh
Confidence 4443 344445545567887 4988764211 112233446666665 99865 78888899998873 0
Q ss_pred -CCcch---------HHHHHHHHHHhcCCCeEEEEecCCCce
Q 019556 85 -TCPWV---------SKVWTSVEKHKKGDYTSIIHGKYSHEE 116 (339)
Q Consensus 85 -TCP~V---------~kv~~~~~~~~~~Gy~iIIiG~~~HpE 116 (339)
.+|.| +-..=++.=+...|+.+.+-|.-+.|-
T Consensus 106 ~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 106 AKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 22332 112222333555788888888766653
No 296
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=26.15 E-value=4.9e+02 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=23.7
Q ss_pred hhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 236 MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 236 la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
+. .++|.+|+.+.. +. .+++..++.+.|...+...
T Consensus 49 ~~-~~vdgii~~~~~---~~-~~~~~~~~~~~pvV~~~~~ 83 (270)
T cd01544 49 IL-EDVDGIIAIGKF---SQ-EQLAKLAKLNPNLVFVDSN 83 (270)
T ss_pred hc-cCcCEEEEecCC---CH-HHHHHHHhhCCCEEEECCC
Confidence 44 689999998632 22 4444555678898888764
No 297
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.12 E-value=1e+02 Score=25.01 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=30.7
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
.+=|++|++.- .+|.++..+++.|+++|.+++-|-+..+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45699999865 4667777888999999988888887654
No 298
>PRK00035 hemH ferrochelatase; Reviewed
Probab=26.09 E-value=2.1e+02 Score=28.00 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHHhhCC-CCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 5 AYEARKQFP-EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 5 a~~~~~~~~-~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
+.+++++++ ..++.+..++=.+|..++.+.++=-..... ...-.+++.|||.+||+|.... ++|
T Consensus 143 i~~~~~~~~~~~~i~~i~~~~~~p~~i~~l~~~I~~~~~~------~~~~~~~~~llfs~HG~P~~~~----~~g----- 207 (333)
T PRK00035 143 LARALAKLRLQPEIRFIRSYYDHPGYIEALAESIREALAK------HGEDPEPDRLLFSAHGLPQRYI----DKG----- 207 (333)
T ss_pred HHHHHHhcCCCCcEEEeCCccCCHHHHHHHHHHHHHHHHh------cCcccCCcEEEEecCCCchHHh----hcC-----
Confidence 344444443 235777777778888877776542222211 0000034679999999998754 222
Q ss_pred CCCcchHHHHHHHHHHhc
Q 019556 84 TTCPWVSKVWTSVEKHKK 101 (339)
Q Consensus 84 aTCP~V~kv~~~~~~~~~ 101 (339)
.||-..+++.++.+.+
T Consensus 208 --d~Y~~~~~~t~~~l~~ 223 (333)
T PRK00035 208 --DPYQQQCEETARLLAE 223 (333)
T ss_pred --CChHHHHHHHHHHHHH
Confidence 4577777776666554
No 299
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=2.3e+02 Score=27.60 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHH-HHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCC-eEEEE
Q 019556 32 RLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE-MVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDY-TSIIH 109 (339)
Q Consensus 32 ~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~-~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy-~iIIi 109 (339)
.+++.||.+++ |.-.-+| ..-+.-=-++++. +.+...+ -....+.||-+.-.-+..+++.++|| .||.+
T Consensus 17 ~~~~~~I~vlP-------L~V~~~g-~~y~D~~~l~~~~~~~~~~~~-~~~p~TSqPs~~~~~~~~~~l~~~g~~~vi~i 87 (282)
T COG1307 17 LAEKLDITVLP-------LSVIIDG-ESYFDGVELSPDQFYYEMAEK-GELPKTSQPSPGEFEELFEKLLQKGYDEVISI 87 (282)
T ss_pred HHHhCCeEEEe-------EEEEECC-EEeeccccCCHHHHHHHHHhc-CCCCCCCCcCHHHHHHHHHHHHhCCCcEEEEE
Confidence 45578888885 2212122 2323444556663 5455444 45667999999999999999999999 56665
Q ss_pred e
Q 019556 110 G 110 (339)
Q Consensus 110 G 110 (339)
-
T Consensus 88 ~ 88 (282)
T COG1307 88 H 88 (282)
T ss_pred E
Confidence 3
No 300
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=26.03 E-value=3e+02 Score=24.90 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=45.6
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccc--cHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcch
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTI--CDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI--C~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT 255 (339)
|+++.- .++-.-|..+.+.+.+...+. +. .....++. +..-..+|.. +..+.+ ++|.+|+++. +++-+
T Consensus 2 ig~v~~-~~~~~~~~~~~~~i~~~~~~~-g~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~-~~~~~ 72 (275)
T cd06307 2 LGFLLP-KGSNAFYRELAAALEAAAAAF-PD-----ARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAP-DHPQV 72 (275)
T ss_pred eEEEeC-CCCChHHHHHHHHHHHHHhhh-hc-----cCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCC-CcHHH
Confidence 555543 345566777777776532221 11 01111221 1122344533 334544 8999998753 33333
Q ss_pred HHHHHHHHHhCCCceeeCC
Q 019556 256 SHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~ 274 (339)
...++-+.+.+.|...+.+
T Consensus 73 ~~~i~~~~~~~ipvV~~~~ 91 (275)
T cd06307 73 RAAVARLAAAGVPVVTLVS 91 (275)
T ss_pred HHHHHHHHHCCCcEEEEeC
Confidence 4556667678888877765
No 301
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.02 E-value=1.3e+02 Score=27.69 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=40.5
Q ss_pred ccccHHHHHHHHHHHHhhhhCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 220 NTICDATQERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 220 nTIC~AT~~RQ~a~~~la~~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
|...+++.-.+.-.. .+ .+-|++|++-. -+|.|+..+++.|++.|.++..|-+..+
T Consensus 95 nd~~~~~~~~~~~~~-~~-~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 95 NDYDYDTVFARALEG-SA-RPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred ccccHHHHHHHHHHh-cC-CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 455555544333333 44 56799999876 4788889999999999999999987654
No 302
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=25.84 E-value=65 Score=29.41 Aligned_cols=72 Identities=14% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcE-----EeCCCcchHHHHHHHHHHh---c
Q 019556 30 NKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQI-----VDTTCPWVSKVWTSVEKHK---K 101 (339)
Q Consensus 30 v~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~i-----iDaTCP~V~kv~~~~~~~~---~ 101 (339)
+++|++.|+..|=.. +..+. +..-||| ...+.++++|+.+ .|-..|-....++...++. +
T Consensus 64 L~~Lk~~G~~~Vvtl--------~~~~E---L~~l~Vp-~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~ 131 (168)
T PF05706_consen 64 LERLKDWGAQDVVTL--------LTDHE---LARLGVP-DLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLE 131 (168)
T ss_dssp HHHHHHTT--EEEE---------S-HHH---HHHTT-T-THHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEe--------CcHHH---HHHcCCc-cHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777887765321 00111 2233443 5778888888875 7999998877776655543 5
Q ss_pred CCCeEEEEecCC
Q 019556 102 GDYTSIIHGKYS 113 (339)
Q Consensus 102 ~Gy~iIIiG~~~ 113 (339)
.|.+|+|+..-+
T Consensus 132 ~g~~V~vHC~GG 143 (168)
T PF05706_consen 132 NGRKVLVHCRGG 143 (168)
T ss_dssp TT--EEEE-SSS
T ss_pred cCCEEEEECCCC
Confidence 899999998544
No 303
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=25.74 E-value=75 Score=28.36 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.1
Q ss_pred EEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 244 miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
++|+||..|.=|.-=.+++.+.+.+.+++.+..-++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCH
Confidence 6899999999998777777777888999988887755
No 304
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.58 E-value=4.7e+02 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=28.9
Q ss_pred HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 231 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
+.++.|.+..+|.+++.+...+++ . ++.+++.+.|...+....
T Consensus 46 ~~i~~l~~~~vdgiii~~~~~~~~--~-~~~~~~~~ipvV~~~~~~ 88 (264)
T cd06274 46 ETVETLIARQVDALIVAGSLPPDD--P-YYLCQKAGLPVVALDRPG 88 (264)
T ss_pred HHHHHHHHcCCCEEEEcCCCCchH--H-HHHHHhcCCCEEEecCcc
Confidence 344455557899999988754443 2 334567888998887754
No 305
>PLN02564 6-phosphofructokinase
Probab=25.53 E-value=1.5e+02 Score=31.47 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceeeCCCCccCC
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
.+++.+..|..-.+|.++||||-.|-.+- +|++-+++.|.+.-.|-=+.=|+-
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDN 217 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDN 217 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccC
Confidence 67778887766789999999999998665 888888888866333443444443
No 306
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=25.29 E-value=1.8e+02 Score=26.46 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCCCHHH-HHHHHhcCCcE--EeCCCc---chHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 63 AFGAAVEE-MVTLNNKNVQI--VDTTCP---WVSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 63 AHGv~~~~-~~~l~~~g~~i--iDaTCP---~V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
.|+++.+. ...+++.|+.+ +|..|. +++.+.+..+++.++|+..|+.|+-.
T Consensus 42 ~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~l~~~l~~~~~~g~~~vv~G~i~ 98 (194)
T cd01994 42 YHTVNHELLELQAEAMGIPLIRIEISGEEEDEVEDLKELLRKLKEEGVDAVVFGAIL 98 (194)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 58877764 46677888865 666664 77888888888888899999999654
No 307
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.27 E-value=4.9e+02 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHH-hhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 228 ERQDAMYK-MVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 228 ~RQ~a~~~-la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
..++.+++ |.+.+||.+|+.+... |. ..++.+++.+.|...+.+.
T Consensus 42 ~~~~~~~~~l~~~~vdgvi~~~~~~--~~-~~~~~l~~~~iPvv~~~~~ 87 (269)
T cd06297 42 RLKRYLESTTLAYLTDGLLLASYDL--TE-RLAERRLPTERPVVLVDAE 87 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCcc--Ch-HHHHHHhhcCCCEEEEccC
Confidence 33455543 5456899999997542 33 4555566788999988764
No 308
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=25.26 E-value=3.2e+02 Score=23.17 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=11.0
Q ss_pred HHHHHhcC-CCeEEEEecCC
Q 019556 95 SVEKHKKG-DYTSIIHGKYS 113 (339)
Q Consensus 95 ~~~~~~~~-Gy~iIIiG~~~ 113 (339)
..+++.++ ...+|.+||..
T Consensus 153 ~~~~~~~~~~~~~i~iGD~~ 172 (188)
T TIGR01489 153 VIHKLSEPKYQHIIYIGDGV 172 (188)
T ss_pred HHHHHHhhcCceEEEECCCc
Confidence 34444444 56777777654
No 309
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=25.23 E-value=89 Score=28.75 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
.++|.||..|.-++.==.++.+.+.+.++|-|....|.
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~D~ 39 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAFDD 39 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCCCH
Confidence 47999999999999888888888889999999988865
No 310
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=25.05 E-value=1.3e+02 Score=25.61 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEcCCCCcchHHHHHHHHHhCCCceeeCCCCc--cCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHHHH
Q 019556 245 LVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKR--IGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVED 322 (339)
Q Consensus 245 iVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~e--l~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e 322 (339)
||+...+..--..|.+.|++.|.++|.|.++.- +++ .....+|| .-.|..+|++
T Consensus 52 Vvlk~~~~~el~~l~~~a~~~~l~~~~v~DAG~Tei~p---------------------gs~Tvlai---gP~~~~~id~ 107 (115)
T TIGR00283 52 VVLKVNSLEELLEIYHKAESLGLVTGLIRDAGHTQIPP---------------------GTITAVGI---GPDEDEKIDK 107 (115)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEEcCCcceeCC---------------------CCcEEEEE---CCCCHHHHHH
Confidence 555555544455777777888999999988753 333 22344555 4788999998
Q ss_pred HHHHHH
Q 019556 323 VLKKVF 328 (339)
Q Consensus 323 Vi~~l~ 328 (339)
+...|+
T Consensus 108 itg~Lk 113 (115)
T TIGR00283 108 ITGDLK 113 (115)
T ss_pred HhCCCc
Confidence 876653
No 311
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=24.94 E-value=1.7e+02 Score=28.59 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCcchH--HHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc-CCCcEEEEeecCCCcHH
Q 019556 242 DLILVVGGWNSSNTS--HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP-KGQITIGITSGASTPDK 318 (339)
Q Consensus 242 D~miVVGG~nSSNT~--rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~-~~~~~VGITAGASTP~~ 318 (339)
=-++||.+--|.||. +|-.+|++.++|-..+.+.++|-. |+- +....|+||--.+--..
T Consensus 149 AkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~------------------AIGkKtravVAItD~g~ed~~ 210 (263)
T PTZ00222 149 ARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGD------------------AIGRKTATCVAITDVNAEDEA 210 (263)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HHCCCCCeEEEEeeCCcccHH
Confidence 346677788889998 589999999999999999999864 331 13578999976665555
Q ss_pred HHHHHHHHHHh
Q 019556 319 AVEDVLKKVFE 329 (339)
Q Consensus 319 lI~eVi~~l~~ 329 (339)
-...+++.+..
T Consensus 211 ~l~~lv~~~~~ 221 (263)
T PTZ00222 211 ALKNLIRSVNA 221 (263)
T ss_pred HHHHHHHHHHH
Confidence 56666666654
No 312
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=24.85 E-value=99 Score=32.25 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhC--CCceee
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~--~~ty~I 272 (339)
.+++.+..|....+|.+++|||-.|--+- +|.|-+++.| .+...|
T Consensus 160 ~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGI 207 (443)
T PRK06830 160 DPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGI 207 (443)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 56677777766679999999999998766 7888887777 344444
No 313
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=24.72 E-value=2.1e+02 Score=26.11 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCEEecCCcccc----------------ccccccCCCEEEECCCCC-CHH-HHHHHHhcCCcEEeCCCcch
Q 019556 28 TVNKRLEEMAVQNIPVEEGKK----------------QFDVVNKGDVVVLPAFGA-AVE-EMVTLNNKNVQIVDTTCPWV 89 (339)
Q Consensus 28 ~Vv~~L~~~Gv~~v~~~~~~~----------------~~~~~~~g~~VIIrAHGv-~~~-~~~~l~~~g~~iiDaTCP~V 89 (339)
++++.|.++|+.+-... ... -...+ ...+|-|+.||. +.+ ....|...|+.++.
T Consensus 63 ~~L~~L~~~G~l~~~~~-~~~~~~~~f~~~~g~~~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------ 134 (193)
T TIGR03882 63 YALDRLERRGYLVEDAP-ELPPAAAAFWSGLGVDPAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------ 134 (193)
T ss_pred HHHHHHHHCCCEeccCC-CCCHHHHHHHHHcCCCHHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC------
Confidence 68889999998764321 000 00111 134788899995 556 78889999999986
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc
Q 019556 90 SKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA 124 (339)
Q Consensus 90 ~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~ 124 (339)
...+-+|++.=|..+||...+.-.+
T Consensus 135 ----------~~a~l~vVl~~Dyl~p~L~~~n~~~ 159 (193)
T TIGR03882 135 ----------SEADLTVVLTDDYLDPELAAINQRA 159 (193)
T ss_pred ----------CCCCEEEEEeCCCCChHHHHHHHHH
Confidence 2345677777788899987775433
No 314
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.65 E-value=5e+02 Score=23.99 Aligned_cols=48 Identities=25% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 227 QERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 227 ~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
..+| +.++.|.++.+|.+|+.+- .+.=....++-+++.|.|...+++.
T Consensus 42 ~~~q~~~i~~l~~~~vdgiIi~~~-~~~~~~~~l~~~~~~giPvV~~~~~ 90 (302)
T TIGR02637 42 AEGQIEVVNSLIAQKVDAIAISAN-DPDALVPALKKAMKRGIKVVTWDSG 90 (302)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCC-ChHHHHHHHHHHHHCCCEEEEeCCC
Confidence 4455 4455554578999999863 2221234456677888999888764
No 315
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=24.59 E-value=1e+02 Score=33.19 Aligned_cols=99 Identities=16% Similarity=0.036 Sum_probs=77.1
Q ss_pred EecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHH
Q 019556 19 ITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEK 98 (339)
Q Consensus 19 ~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~ 98 (339)
=||=|--|-...+.+++.|+.|+.. +++ .||.-|.--.-++.+++.|+.+|-.--..........+.
T Consensus 77 GYGFLSEn~~Fae~c~~~Gi~FiGP-----------~~~--aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~ 143 (670)
T KOG0238|consen 77 GYGFLSENAEFAELCEDAGITFIGP-----------PPS--AIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKV 143 (670)
T ss_pred CccccccchHHHHHHHHcCCeEECC-----------CHH--HHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHH
Confidence 4788999999999999999999973 222 478888888888888899999987777777777777777
Q ss_pred HhcCCCeEEEEecCCCceeeeeccccCcE-EEEcChHHHHHh
Q 019556 99 HKKGDYTSIIHGKYSHEETVATASFAGKY-IIVKNMKEAEYV 139 (339)
Q Consensus 99 ~~~~Gy~iIIiG~~~HpEv~gi~g~~~~~-~vv~~~~e~~~~ 139 (339)
..+=||.|.| +++.|=.++. -++.+.+|++..
T Consensus 144 a~eIgyPvMi---------Ka~~GGGGkGMria~~~~ef~~~ 176 (670)
T KOG0238|consen 144 AREIGYPVMI---------KATAGGGGKGMRIAWSEEEFEEG 176 (670)
T ss_pred HHhcCCcEEE---------EeccCCCCcceEeecChHHHHHH
Confidence 7778999886 5566555544 466777776554
No 316
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=24.48 E-value=96 Score=30.35 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=37.0
Q ss_pred ccccccccc----HHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 215 HFISFNTIC----DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 215 ~~~~~nTIC----~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
++.+.||-| +...-=+.+.+.+..+ .+..|||...|+-+.....+|...+.|..
T Consensus 44 ~~~~~D~~~~~~~~~~~a~~~a~~~~~~~--~v~aiiGp~~S~~~~av~~~~~~~~ip~I 101 (396)
T cd06373 44 TLVFEDSECKCGCSESEAPLVAVDLYFQH--KPDAFLGPGCEYAAAPVARFAAHWNVPVL 101 (396)
T ss_pred EEEEecCccccccchhhhHHHHHHHHhcc--CCeEEECCCccchhHHHHHHHhcCCCceE
Confidence 455678877 3333333444444322 57778999999999999999998887654
No 317
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.47 E-value=1.6e+02 Score=26.46 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=31.4
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
.+-|++|+|.. -+|.++...++.|++.|.+++-|.+..
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45699999874 467888899999999999999998754
No 318
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.45 E-value=94 Score=25.05 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=35.8
Q ss_pred ccccHHHHH-HHHHHHHhhhhCCcEEEEEc-CCCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 220 NTICDATQE-RQDAMYKMVEEKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 220 nTIC~AT~~-RQ~a~~~la~~~vD~miVVG-G~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
......+.+ +...+..+ .+-|++|++. +.++..+..+++.+++.|.++..|-+..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~--~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 34 VVISYEAGEFFHGPLENL--DPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EEEEEEHHHHHTTGGGGC--STTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ceeccchHHHhhhhcccc--cccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 344444555 44445555 3579999988 45666666777777777777777765544
No 319
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=24.26 E-value=83 Score=31.81 Aligned_cols=43 Identities=30% Similarity=0.439 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.|..+++.|.+...|.++||||-.|.=+.++ +++..+.+.+.|
T Consensus 82 ~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~--Lae~~~i~vVGv 124 (347)
T COG0205 82 GRKVAAENLKKLGIDALVVIGGDGSYTGAAL--LAEEGGIPVVGV 124 (347)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCChHHHHHH--HHHhcCCcEEec
Confidence 4557777776678999999999998655543 454444555544
No 320
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.25 E-value=4.6e+02 Score=24.48 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=34.3
Q ss_pred HHHHHHhhhhCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 230 QDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 230 Q~a~~~la~~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
...+..+ ++=|++|++.- ..+.++..+++.|++.|.++..|.+..+
T Consensus 167 ~~~~~~~--~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~ 213 (278)
T PRK11557 167 LATVQAL--SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTP 213 (278)
T ss_pred HHHHHhC--CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3444455 46799998865 3456667899999999999999988753
No 321
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.22 E-value=1.9e+02 Score=27.30 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred hCCcEEEEEcCCCCcch
Q 019556 239 EKVDLILVVGGWNSSNT 255 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT 255 (339)
...|+++|+||-.+=|.
T Consensus 56 ~~~d~ivv~GGDGTl~~ 72 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINE 72 (293)
T ss_pred cCCCEEEEECCCChHHH
Confidence 56899999999988664
No 322
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=24.05 E-value=5.3e+02 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 234 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 234 ~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
..+.+.++|.+|+.+...+ . ..++.+++.|.|+..+.+.
T Consensus 58 ~~l~~~~~dgiii~~~~~~--~-~~~~~~~~~~ipvV~~~~~ 96 (275)
T cd06295 58 RYLASGRADGVILIGQHDQ--D-PLPERLAETGLPFVVWGRP 96 (275)
T ss_pred HHHHhCCCCEEEEeCCCCC--h-HHHHHHHhCCCCEEEECCc
Confidence 3343368999999876433 2 3456677889999988764
No 323
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=23.92 E-value=3.6e+02 Score=24.27 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=45.5
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL 258 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL 258 (339)
|+++.- ++-.-|..+.+-+.+.+.+.-......-.+.+.|+-.+.++. +..+++|.+..+|.+|++|. +++..+
T Consensus 2 igv~~~--~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vd~iI~~~~---~~~~~~ 75 (281)
T cd06325 2 VGILQL--VEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNL-PTIARKFVADKPDLIVAIAT---PAAQAA 75 (281)
T ss_pred eEEecC--CCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEEcCc---HHHHHH
Confidence 555552 555566777777765433321100000123334443333332 34555565578999999864 233333
Q ss_pred HHHHHHhCCCceeeCCC
Q 019556 259 QEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 259 ~eia~~~~~~ty~Ie~~ 275 (339)
. .+..+.|..++...
T Consensus 76 ~--~~~~~iPvV~~~~~ 90 (281)
T cd06325 76 A--NATKDIPIVFTAVT 90 (281)
T ss_pred H--HcCCCCCEEEEecC
Confidence 2 44567788777643
No 324
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.90 E-value=88 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=18.2
Q ss_pred EEEEEcCC-CCcchHHHHHHHHHh
Q 019556 243 LILVVGGW-NSSNTSHLQEIAEDR 265 (339)
Q Consensus 243 ~miVVGG~-nSSNT~rL~eia~~~ 265 (339)
++++.|+. ..|||.+|++.+.+.
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~ 26 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQ 26 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCCHHHHHHHHHHHH
Confidence 57788886 689999998877663
No 325
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=23.85 E-value=3.7e+02 Score=21.25 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=44.9
Q ss_pred ccccccccHHHHHHHHHHHHhhhhCCc-EEEE-EcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchh
Q 019556 216 FISFNTICDATQERQDAMYKMVEEKVD-LILV-VGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL 293 (339)
Q Consensus 216 ~~~~nTIC~AT~~RQ~a~~~la~~~vD-~miV-VGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~ 293 (339)
+.++-++|..-+.-...+.+|+ .+.+ +.++ |-+-.+. ...++|++.+... +|. +
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la-~~~~~v~~~~vd~d~~~---~~~~l~~~~~V~~--------~Pt---~--------- 75 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLS-RTCNDVVFLLVNGDEND---STMELCRREKIIE--------VPH---F--------- 75 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHH-HHCCCCEEEEEECCCCh---HHHHHHHHcCCCc--------CCE---E---------
Confidence 4477899998888888888887 3433 2222 3322222 2345666654321 222 0
Q ss_pred hhhhccccCCCcEEEEeecCCCcHHHHHHHHH
Q 019556 294 VEKENWLPKGQITIGITSGASTPDKAVEDVLK 325 (339)
Q Consensus 294 ~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~ 325 (339)
-.| ++-+.++-..|+. |..|.+.|..
T Consensus 76 ----~~~-~~G~~v~~~~G~~-~~~l~~~~~~ 101 (103)
T cd02985 76 ----LFY-KDGEKIHEEEGIG-PDELIGDVLY 101 (103)
T ss_pred ----EEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence 112 2335678888855 7777776653
No 326
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=23.76 E-value=96 Score=28.61 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred EEEEEcCCC------CcchHHHHHHHHHhCCCceeeCCCCccCCCC--cchhhhccchhhhhhcccc-CCCcEEEEeecC
Q 019556 243 LILVVGGWN------SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGN--KIAYKLMHGELVEKENWLP-KGQITIGITSGA 313 (339)
Q Consensus 243 ~miVVGG~n------SSNT~rL~eia~~~~~~ty~Ie~~~el~~~~--~~~~~~~~~~~~~~~~wl~-~~~~~VGITAGA 313 (339)
.+|+||..- -+|..-|.+..++.|...+.+.. .+-+|+ .|. ..-.+|+. .++..|=+|.|+
T Consensus 7 aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~--~iVpDd~~~I~--------~aL~~a~~~~~~DlIITTGGt 76 (193)
T PRK09417 7 GLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIET--RLIPDEQDLIE--------QTLIELVDEMGCDLVLTTGGT 76 (193)
T ss_pred EEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEE--EECCCCHHHHH--------HHHHHHhhcCCCCEEEECCCC
Confidence 356677742 25888999999998644332311 222211 111 11126773 257777777776
Q ss_pred C-CcHHHHHHHHHHHHh
Q 019556 314 S-TPDKAVEDVLKKVFE 329 (339)
Q Consensus 314 S-TP~~lI~eVi~~l~~ 329 (339)
| +|..++-+++..+.+
T Consensus 77 g~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 77 GPARRDVTPEATLAVAD 93 (193)
T ss_pred CCCCCCcHHHHHHHHhC
Confidence 6 577777777777654
No 327
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=23.66 E-value=2.6e+02 Score=28.38 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=47.4
Q ss_pred ceEEEEEccCCChH-HHHHHHHHHHHHHhhhccccccccccccccc-ccHHHHHH-HHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKG-ETEEIGKLVEKTMMRKFGVENVNEHFISFNT-ICDATQER-QDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nT-IC~AT~~R-Q~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.||...++... .++.+.+.|++ . ...+.+|+. -.+.|.+- +++++.+....+|++|-|||-..-
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~-----~-----gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEA-----A-----GINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-----c-----CCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 58888887665443 46777777754 1 122333432 22333332 233333324579999999999998
Q ss_pred chHHHHHHHHHh
Q 019556 254 NTSHLQEIAEDR 265 (339)
Q Consensus 254 NT~rL~eia~~~ 265 (339)
.+-|...+....
T Consensus 94 D~AKaia~~~~~ 105 (414)
T cd08190 94 DTAKAANLYASH 105 (414)
T ss_pred HHHHHHHHHHhC
Confidence 888887765443
No 328
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.51 E-value=6.1e+02 Score=23.65 Aligned_cols=89 Identities=13% Similarity=0.255 Sum_probs=48.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. ++-.-|.++...+.+...+ .+ .++.++++ ..-.++| +.+..|.+..+|.+|+.+.... +.
T Consensus 62 ~~Igvv~~~-~~~~~~~~l~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~ 131 (328)
T PRK11303 62 RSIGLIIPD-LENTSYARIAKYLERQARQ-RG-----YQLLIACS--DDQPDNEMRCAEHLLQRQVDALIVSTSLPP-EH 131 (328)
T ss_pred ceEEEEeCC-CCCchHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC-Ch
Confidence 468887643 3445577777766654322 22 12333221 1122344 3344454578999999865322 23
Q ss_pred HHHHHHHHHhCCCceeeCCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~ 276 (339)
.+++...+.+.|..+|....
T Consensus 132 -~~~~~l~~~~iPvV~v~~~~ 151 (328)
T PRK11303 132 -PFYQRLQNDGLPIIALDRAL 151 (328)
T ss_pred -HHHHHHHhcCCCEEEECCCC
Confidence 33444456788999998753
No 329
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=23.42 E-value=3.3e+02 Score=26.57 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=50.0
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~a~~~la~~~vD~miVVGG~nSS 253 (339)
+++.+|....... ..++.+.+.|++. .++.+|+.+| +.|.+-= ++++.+....+|++|-|||-..-
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-----------~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~ 91 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-----------IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAI 91 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-----------CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 4777777554433 2456666666531 1244566555 3333322 22223323569999999999999
Q ss_pred chHHHHHHHHH-----hCCCceeeCCC
Q 019556 254 NTSHLQEIAED-----RGIPSYWIDSE 275 (339)
Q Consensus 254 NT~rL~eia~~-----~~~~ty~Ie~~ 275 (339)
.+-|.+.+... .+.|-+.|-|-
T Consensus 92 D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 92 DAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 99987655322 23455666554
No 330
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=23.41 E-value=1.4e+02 Score=25.62 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=23.6
Q ss_pred HHHHHHhhhhCCcEEEE-EcCCCCcchHHHHHHHHHhCCC
Q 019556 230 QDAMYKMVEEKVDLILV-VGGWNSSNTSHLQEIAEDRGIP 268 (339)
Q Consensus 230 Q~a~~~la~~~vD~miV-VGG~nSSNT~rL~eia~~~~~~ 268 (339)
.+++.++ +++|++++ +||+.+.+.....++++..+++
T Consensus 120 ~~~~~~~--~~vDvl~~p~~g~~~~~~~~a~~~~~~l~pk 157 (163)
T PF13483_consen 120 DEQLKQL--GKVDVLFLPVGGPFTMGPEEAAELAERLKPK 157 (163)
T ss_dssp HHHHHHH---S-SEEEEE--TTTS--HHHHHHHHHHCT-S
T ss_pred HHHHhcc--cCCCEEEecCCCCcccCHHHHHHHHHHcCCC
Confidence 3444555 47999988 9998899999999999887654
No 331
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.41 E-value=1.2e+02 Score=24.97 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=31.1
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++-|++|+|.- -+|.++...++.|++.|.+++-|-+-.+
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 45699888865 4778888999999999988888877544
No 332
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=23.31 E-value=90 Score=31.22 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-.++.|||+..|+-|..+..+|...+.|-.
T Consensus 102 ~~v~aviG~~~S~~~~av~~~~~~~~ip~I 131 (452)
T cd06362 102 KPVAGVIGASYSSVSIQVANLLRLFKIPQI 131 (452)
T ss_pred CCeEEEECCCCCchHHHHHHHhccccCccc
Confidence 468889999999999999999998887643
No 333
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.27 E-value=1.7e+02 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=35.1
Q ss_pred HhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCc-eeeCCCC
Q 019556 235 KMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPS-YWIDSEK 276 (339)
Q Consensus 235 ~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~t-y~Ie~~~ 276 (339)
.+. +-.|.+|-+||-.|+-++..+.+|+..|.++ +.+|+..
T Consensus 59 al~-~g~dTlvT~GgiQSNh~r~tAavA~~lGl~~v~ile~~~ 100 (323)
T COG2515 59 ALR-KGADTLVTYGGIQSNHVRQTAAVAAKLGLKCVLILENIE 100 (323)
T ss_pred hhh-cCCcEEEEecccchhHHHHHHHHHHhcCCcEEEEEeccc
Confidence 454 6799999999999999999999999999764 6777777
No 334
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=23.25 E-value=1.6e+02 Score=28.49 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceeeCC
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~Ie~ 274 (339)
..+.+...+ .++|++||||-..+.... .|.+.+.+.|.+.+.|.-
T Consensus 204 ~~~~a~~~~--~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~ 249 (285)
T PRK05333 204 RVAAARAAL--DAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNL 249 (285)
T ss_pred HHHHHHHHH--hcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECC
Confidence 344455555 469999999988777655 778889888886666653
No 335
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.17 E-value=2.2e+02 Score=31.50 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=42.1
Q ss_pred CHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCe
Q 019556 26 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 105 (339)
Q Consensus 26 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~ 105 (339)
-++.+++|+++|++++- + .|| -......-+++.|+.=+=|-|-==-|++ .++++.++|+.
T Consensus 542 a~~aI~~L~~~Gi~~~m----------L-TGD--------n~~~A~~iA~~lGId~v~AellPedK~~-~V~~l~~~g~~ 601 (713)
T COG2217 542 AKEAIAALKALGIKVVM----------L-TGD--------NRRTAEAIAKELGIDEVRAELLPEDKAE-IVRELQAEGRK 601 (713)
T ss_pred HHHHHHHHHHCCCeEEE----------E-cCC--------CHHHHHHHHHHcChHhheccCCcHHHHH-HHHHHHhcCCE
Confidence 35677777777777553 1 344 1234455566666633335554445554 67788899999
Q ss_pred EEEEecC
Q 019556 106 SIIHGKY 112 (339)
Q Consensus 106 iIIiG~~ 112 (339)
|..+||-
T Consensus 602 VamVGDG 608 (713)
T COG2217 602 VAMVGDG 608 (713)
T ss_pred EEEEeCC
Confidence 9999974
No 336
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=22.84 E-value=6.7e+02 Score=23.92 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=48.7
Q ss_pred ecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHH--------HHHHHhcCCcE----EeCC-C
Q 019556 20 TNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEE--------MVTLNNKNVQI----VDTT-C 86 (339)
Q Consensus 20 lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~--------~~~l~~~g~~i----iDaT-C 86 (339)
++-+..|+.=+++..+.|+..+.- + ++-.+.-.-..+|-+++. .+.++++|+.| .|++ |
T Consensus 67 ~~~~r~~~~di~~a~~~g~~~i~i------~--~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~ 138 (262)
T cd07948 67 LTHIRCHMDDARIAVETGVDGVDL------V--FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRS 138 (262)
T ss_pred EEEecCCHHHHHHHHHcCcCEEEE------E--EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCC
Confidence 555788888888888888765531 0 000111112335655543 35667888877 5666 8
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEe
Q 019556 87 PWVSKVWTSVEKHKKGDYTSIIHG 110 (339)
Q Consensus 87 P~V~kv~~~~~~~~~~Gy~iIIiG 110 (339)
| ...+.+.++++.+-|-..|.+.
T Consensus 139 ~-~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 139 D-LVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred C-HHHHHHHHHHHHHcCCCEEEEC
Confidence 8 5667778888776665544443
No 337
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=22.72 E-value=2.5e+02 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=28.5
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
.++|++|-|||=.+-.+-|.+... .+.|-+.|-|-
T Consensus 79 ~~~d~IIaIGGGs~~D~aK~vA~~--~~~p~i~IPTT 113 (348)
T cd08175 79 RDTDLIIAVGSGTINDITKYVSYK--TGIPYISVPTA 113 (348)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHh--cCCCEEEecCc
Confidence 379999999999999999987643 46777877765
No 338
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=22.71 E-value=47 Score=30.15 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred HHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 230 QDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 230 Q~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
++..+.| ..+|+++|-|| ||.+|.+.-++.
T Consensus 72 ~~~~~~l--~~ad~I~~~GG----~~~~~~~~l~~t 101 (210)
T cd03129 72 PDVVARL--LEADGIFVGGG----NQLRLLSVLRET 101 (210)
T ss_pred HHHHHHH--hhCCEEEEcCC----cHHHHHHHHHhC
Confidence 3444455 36999999986 677777766554
No 339
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=22.65 E-value=2e+02 Score=24.93 Aligned_cols=67 Identities=9% Similarity=0.075 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCC-c--EEeCC--CcchHHHHHHHHHHhc
Q 019556 27 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNV-Q--IVDTT--CPWVSKVWTSVEKHKK 101 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~-~--iiDaT--CP~V~kv~~~~~~~~~ 101 (339)
+.+++.|+++|+++.- + .|| -.......++..|+ . +.--. =|.-+-..+.++++..
T Consensus 133 ~~~l~~L~~~Gi~~~i----------~-TGD--------~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 133 KEALQELKEAGIKVAI----------L-TGD--------NESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HHHHHHHHHTTEEEEE----------E-ESS--------EHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhccCcceee----------e-ecc--------ccccccccccccccccccccccccccccchhHHHHHHHHhc
Confidence 6788888899985542 1 233 12345556666677 2 33222 2555555778888876
Q ss_pred CCCeEEEEecC
Q 019556 102 GDYTSIIHGKY 112 (339)
Q Consensus 102 ~Gy~iIIiG~~ 112 (339)
++..++.+||.
T Consensus 194 ~~~~v~~vGDg 204 (215)
T PF00702_consen 194 KPGEVAMVGDG 204 (215)
T ss_dssp TGGGEEEEESS
T ss_pred CCCEEEEEccC
Confidence 77799999985
No 340
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=22.60 E-value=47 Score=29.76 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=53.4
Q ss_pred CCCCceEEecc-cccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchH
Q 019556 12 FPEEKIWITNE-IIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVS 90 (339)
Q Consensus 12 ~~~~~Vy~lG~-lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~ 90 (339)
..++.|.+.|- .+-..-+...|.++|..+.--....+++.+.-..+-+||.|-|.|.-+....-+.|..|||.-.-++
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~- 112 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKADWIKPGAVVIDVGINYV- 112 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEE-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeeccccccccccccCCcEEEecCCccc-
Confidence 34677888774 2344446678888998764321111233333333338899999999988887888999999988887
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCceeeee
Q 019556 91 KVWTSVEKHKKGDYTSIIHGKYSHEETVAT 120 (339)
Q Consensus 91 kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi 120 (339)
..++. ++||-+.++++..
T Consensus 113 ----------~~~~~--~~GDv~~~~~~~~ 130 (160)
T PF02882_consen 113 ----------PGDGK--LVGDVDFESVKEK 130 (160)
T ss_dssp ----------TTTTE--EEESB-HHHHHTT
T ss_pred ----------cccce--eeecccHHHhhcc
Confidence 23333 4676665554443
No 341
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.57 E-value=3.4e+02 Score=25.93 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=48.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
++++++.+.+.-- ....+.+++.+.+. +- .+......=..+.+=...+.+|.....|++++.| .+.+..
T Consensus 139 ~~v~ii~~~~~~g---~~~~~~~~~~~~~~-G~-----~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~--~~~~~~ 207 (347)
T cd06335 139 KKVALLLDNTGWG---RSNRKDLTAALAAR-GL-----KPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVG--NGPEGA 207 (347)
T ss_pred CeEEEEeccCchh---hhHHHHHHHHHHHc-CC-----eeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEe--cChHHH
Confidence 6999999887432 23334444433322 21 1111111111233444566666556689988877 566777
Q ss_pred HHHHHHHHhCCCceee
Q 019556 257 HLQEIAEDRGIPSYWI 272 (339)
Q Consensus 257 rL~eia~~~~~~ty~I 272 (339)
.+++-+++.|.+...+
T Consensus 208 ~~~~~~~~~g~~~~~~ 223 (347)
T cd06335 208 QIANGMAKLGWKVPII 223 (347)
T ss_pred HHHHHHHHcCCCCcEe
Confidence 8899898888765433
No 342
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=22.44 E-value=1.4e+02 Score=28.01 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 223 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 223 C~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
|+...-. .++.+|. . -.+..|||+..|+.+..+..+|++.+.|-+...
T Consensus 46 ~~~~~a~-~~a~~li-~-~~V~aiiG~~~S~~~~av~~i~~~~~ip~is~~ 93 (324)
T cd06368 46 NDSFELT-NKACDLL-S-QGVAAIFGPSSSSSANTVQSICDALEIPHITTS 93 (324)
T ss_pred CChHHHH-HHHHHHH-h-cCcEEEECCCCHHHHHHHHHHHhccCCCcEEec
Confidence 5554443 4445565 3 357778999999999999999999988765443
No 343
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=22.42 E-value=5.5e+02 Score=22.71 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=28.2
Q ss_pred HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 231 DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 231 ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
+.++.|.+..+|.+|+.+... +... ++.+++.+.|...+++.
T Consensus 46 ~~~~~l~~~~~dgiii~~~~~--~~~~-l~~~~~~~ipvV~~~~~ 87 (267)
T cd06283 46 EYLESLLAYQVDGLIVNPTGN--NKEL-YQRLAKNGKPVVLVDRK 87 (267)
T ss_pred HHHHHHHHcCcCEEEEeCCCC--ChHH-HHHHhcCCCCEEEEcCC
Confidence 344555556899999987533 3333 45566788999888764
No 344
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.00 E-value=6.2e+02 Score=23.20 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=46.0
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhccccccccccc-ccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFI-SFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
||+++.. +.+-.-|.++..-+.+.+.+ .+ .++. +++ .......| +.+..+.+..+|.+|+.+... .-+
T Consensus 1 ~i~~i~~-~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~l~~~~~~~~dgiii~~~~~-~~~ 70 (294)
T cd06316 1 KAAIVMH-TSGSDWSNAQVRGAKDEFAK-LG-----IEVVATTD--AQFDPAKQVADIETTISQKPDIIISIPVDP-VST 70 (294)
T ss_pred CeEEEec-CCCChHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEEcCCCc-hhh
Confidence 3555553 23434456666666553222 22 1222 111 12233344 344454457899999875322 113
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
...++.+.+.|.|...++..
T Consensus 71 ~~~i~~~~~~~iPvV~~~~~ 90 (294)
T cd06316 71 AAAYKKVAEAGIKLVFMDNV 90 (294)
T ss_pred hHHHHHHHHcCCcEEEecCC
Confidence 45566677888998888764
No 345
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.91 E-value=1.7e+02 Score=27.77 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHhhhhCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 221 TICDATQERQDAMYKMVEEKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 221 TIC~AT~~RQ~a~~~la~~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
..|.....-+.....+. .+=|++|++.- .++.++..+++.|++.|.++..|-+-.+
T Consensus 169 ~~~~~d~~~~~~~~~~~-~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 169 CQAYDDAHIMLMSAALL-QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred EEEcCCHHHHHHHHhcC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34443333343333444 56799888865 4567899999999999999999988754
No 346
>PRK03202 6-phosphofructokinase; Provisional
Probab=21.87 E-value=1.1e+02 Score=30.30 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceee
Q 019556 226 TQERQDAMYKMVEEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI 272 (339)
Q Consensus 226 T~~RQ~a~~~la~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~I 272 (339)
...++.+++.|.+-.+|.+|+|||-.|-.+- +|+| .+.+...|
T Consensus 79 ~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e----~~i~vigi 122 (320)
T PRK03202 79 EEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE----HGIPVIGL 122 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh----cCCcEEEe
Confidence 4577888888876789999999998887665 5554 45666555
No 347
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.78 E-value=2.7e+02 Score=18.91 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=35.3
Q ss_pred ceEEeccc-ccC-HHHHHHHHHcCCEEecCCccccccccccCCC-EEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 16 KIWITNEI-IHN-PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGD-VVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 16 ~Vy~lG~l-IHN-~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~-~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
.+|..|.. -.+ ....+.+++.|-.+.+.. .+.. .||+.... .+..+..+...|+.||.
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~---------~~~~thvI~~~~~-~~~~~~~~~~~~~~iV~ 63 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKLGGKVTSSV---------SKKTTHVIVGSDA-GPKKLLKAIKLGIPIVT 63 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHcCCEEeccc---------cCCceEEEECCCC-CchHHHHHHHcCCeEec
Confidence 47888887 344 445566678999888642 2233 35555444 44336677777777764
No 348
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=21.72 E-value=3.2e+02 Score=27.09 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=44.7
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccc---cHHHHHHHHHHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTI---CDATQERQDAMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTI---C~AT~~RQ~a~~~la~~~vD~miVVGG~nS 252 (339)
+++.+|+...+.. ..++++.+.|++. ...+.+|+.+ |.-...++ +++.+-...+|++|=|||-..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~----------g~~~~~~~~v~~~p~~~~v~~-~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDA----------GLAAALFDEVPPNPTEAAVEA-GLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCCCHHHHHH-HHHHHHhcCCCEEEEeCCchH
Confidence 5788887655433 3567777777541 1122223322 33332322 222222357999999999999
Q ss_pred cchHHHHHHHHH
Q 019556 253 SNTSHLQEIAED 264 (339)
Q Consensus 253 SNT~rL~eia~~ 264 (339)
-.+-|...+...
T Consensus 94 iD~aK~ia~~~~ 105 (370)
T cd08192 94 LDLAKAVALMAG 105 (370)
T ss_pred HHHHHHHHHHHh
Confidence 999998777643
No 349
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=21.67 E-value=2.3e+02 Score=26.25 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHcCCEEec--CCccccccc----cccCCCEEEEC--CCCCCHHHHHHHHhcCCcEEe
Q 019556 25 HNPTVNKRLEEMAVQNIP--VEEGKKQFD----VVNKGDVVVLP--AFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 25 HN~~Vv~~L~~~Gv~~v~--~~~~~~~~~----~~~~g~~VIIr--AHGv~~~~~~~l~~~g~~iiD 83 (339)
+.+.+.+.|+++|+.+.- ..+..-.++ ++.+-|.|++| .|+........++..|+.++.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~g~~~~n 77 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEALGVPVIN 77 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHCCCcEEC
Confidence 467889999999998652 100000111 22234778888 565555566677888988875
No 350
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=21.51 E-value=3.4e+02 Score=20.01 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=21.2
Q ss_pred HHHHHHcCCEEecCCcccccccccc--CCCEEEECCCC-CC-HHHHHHH
Q 019556 30 NKRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAFG-AA-VEEMVTL 74 (339)
Q Consensus 30 v~~L~~~Gv~~v~~~~~~~~~~~~~--~g~~VIIrAHG-v~-~~~~~~l 74 (339)
-+.|+++|+.+..... .++.++ ++..|+|...+ .+ |+..++|
T Consensus 11 ~~~L~~~g~~v~~~~~---~~~~l~~~~~tll~i~~~~~~~~~~~~~~l 56 (70)
T PF14258_consen 11 YQLLEEQGVKVERWRK---PYEALEADDGTLLVIGPDLRLSEPEEAEAL 56 (70)
T ss_pred HHHHHHCCCeeEEecc---cHHHhCCCCCEEEEEeCCCCCCchHHHHHH
Confidence 4578888988764221 123332 23345666653 33 3444444
No 351
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.51 E-value=2.9e+02 Score=26.38 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=33.4
Q ss_pred cccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHH-HHHHHHhCCCceeeCCCC
Q 019556 219 FNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHL-QEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 219 ~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL-~eia~~~~~~ty~Ie~~~ 276 (339)
++.++. +..+++..|. ..-.-++++|--.|.+.-+- +..-...|.+++++.+..
T Consensus 24 ~~~l~~---~~~~~~~~l~-~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~ 78 (321)
T PRK11543 24 PERLGD---DFVRAANIIL-HCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAE 78 (321)
T ss_pred HHhccH---HHHHHHHHHH-hcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHH
Confidence 344552 4667777775 33347888888777765432 333345788888887653
No 352
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.50 E-value=4.4e+02 Score=23.08 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCCC
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 315 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 315 (339)
..|+++..-+-..-| ..+++.|++. .....+.+++. .. -++| .+--.||||+|...
T Consensus 70 ~a~lViaaT~d~e~N-~~i~~~a~~~-~~vn~~d~~~~-~~-----------------f~~pa~v~~~~l~iaisT~G~s 129 (157)
T PRK06719 70 DAHLIYAATNQHAVN-MMVKQAAHDF-QWVNVVSDGTE-SS-----------------FHTPGVIRNDEYVVTISTSGKD 129 (157)
T ss_pred CceEEEECCCCHHHH-HHHHHHHHHC-CcEEECCCCCc-Cc-----------------EEeeeEEEECCeEEEEECCCcC
Confidence 456555544333333 4667777664 34454444432 22 3333 35578999998877
Q ss_pred cHHHHHHHHHHHHhhhhh
Q 019556 316 PDKAVEDVLKKVFEIKRE 333 (339)
Q Consensus 316 P~~lI~eVi~~l~~~~~~ 333 (339)
|- +-..+-++|++..++
T Consensus 130 P~-la~~lr~~ie~~l~~ 146 (157)
T PRK06719 130 PS-FTKRLKQELTSILPK 146 (157)
T ss_pred hH-HHHHHHHHHHHHhhH
Confidence 74 556666666665554
No 353
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.34 E-value=1.2e+02 Score=29.89 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=17.8
Q ss_pred HHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 234 YKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 234 ~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
..+. ..+|++||+||-.. |...++..
T Consensus 63 ~~~~-~~~Dlvi~iGGDGT-----lL~aar~~ 88 (305)
T PRK02649 63 PGFD-SSMKFAIVLGGDGT-----VLSAARQL 88 (305)
T ss_pred hhcc-cCcCEEEEEeCcHH-----HHHHHHHh
Confidence 4554 57999999999762 45555543
No 354
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=21.33 E-value=56 Score=31.70 Aligned_cols=43 Identities=28% Similarity=0.427 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.|++.++.|..-.+|.+++|||-.|-.+-++. +++.+.+...|
T Consensus 80 ~~~~~~~~l~~~~Id~Li~IGG~gs~~~a~~L--~~~~~i~vigi 122 (282)
T PF00365_consen 80 GRKKIVENLKKLGIDALIVIGGDGSMKGAHKL--SEEFGIPVIGI 122 (282)
T ss_dssp HHHHHHHHHHHTTESEEEEEESHHHHHHHHHH--HHHHHSEEEEE
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCHHHHHHHH--HhcCceEEEEE
Confidence 44556666655679999999999997776543 44444555554
No 355
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.31 E-value=1.5e+02 Score=22.12 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=24.6
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceee
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.+=|+++++.- .+|..+..+++.+++.|.+++-|
T Consensus 46 ~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i 80 (87)
T cd04795 46 RKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI 80 (87)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence 45698888864 45677888888888887655544
No 356
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.25 E-value=1.4e+02 Score=31.47 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHhcCCcE--EeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEc
Q 019556 55 KGDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVK 131 (339)
Q Consensus 55 ~g~~VIIrAHGv~~~~~~~l~~~g~~i--iDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~ 131 (339)
++.++|+-.--+.....+.|+++|..+ ||.- .+.++++.+.||. +++||..+|++---.|... +.+++-
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d-------~~~~~~~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS-------RTRVDELRERGIR-AVLGNAANEEIMQLAHLDCARWLLLT 488 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHCCCe-EEEcCCCCHHHHHhcCccccCEEEEE
Confidence 356788888888899999999988655 6643 3445666667866 6799999999864444332 455554
No 357
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=21.25 E-value=75 Score=31.32 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred hHHHHHHhhC-CCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc--cCCCEEEECCCCCCHHHHHHHHhcCC
Q 019556 3 FIAYEARKQF-PEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV--NKGDVVVLPAFGAAVEEMVTLNNKNV 79 (339)
Q Consensus 3 ~~a~~~~~~~-~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~--~~g~~VIIrAHGv~~~~~~~l~~~g~ 79 (339)
+.+.+++++. ..-++-+..+---+|..++.+.++=-.. ++.. ++++.+||+|||+|....+ ++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~~~~i~~~---------l~~~~~~~~~~llfSaHglP~~~~~---~~G- 202 (316)
T PF00762_consen 136 DEVERALKKSRPNPKVRFIPSFYDHPAYIEALAERIREA---------LERFPRGEPDHLLFSAHGLPQRYVE---DKG- 202 (316)
T ss_dssp HHHHHHHHHTHSSSEEEEE---TT-HHHHHHHHHHHHHH---------HTTS-HCCCEEEEEEEE--BHHHHT---CCT-
T ss_pred HHHHHHHHhcCCCCeEEEeCCccCCHHHHHHHHHHHHHH---------HHhcCCCCCCEEEEccCCCCccccc---cCC-
Confidence 3445555442 2346888888888898888887652222 2233 2357899999999987652 122
Q ss_pred cEEeCCCcchHHHHHHHHHHhcC
Q 019556 80 QIVDTTCPWVSKVWTSVEKHKKG 102 (339)
Q Consensus 80 ~iiDaTCP~V~kv~~~~~~~~~~ 102 (339)
.||...++..++..++.
T Consensus 203 ------dpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 203 ------DPYPAQCEETARLIAER 219 (316)
T ss_dssp -------SHHHHHHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHHHH
Confidence 38988888888777664
No 358
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=21.09 E-value=1.6e+02 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=31.9
Q ss_pred cccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCC
Q 019556 221 TICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGI 267 (339)
Q Consensus 221 TIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~ 267 (339)
.+|.-..+.- +++++.+ .++|++|..||-.-+-.-...+..++.+.
T Consensus 37 ~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 37 GIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp EEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred EEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 3554444443 4444554 67899999999887777788888877763
No 359
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.90 E-value=3.2e+02 Score=26.06 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHhhhcCCCCCCCCCceEEEEEcc----CCChHHHHHHHHHHHHHHhhhccccccccccc-ccccccHHHH
Q 019556 153 STKEAFLEKFKKAVSKGFDPDVDLVKVGIANQT----TMLKGETEEIGKLVEKTMMRKFGVENVNEHFI-SFNTICDATQ 227 (339)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvsQT----T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-~~nTIC~AT~ 227 (339)
-|.+.+...+....+.+. +.+.+.-.| +++.++..++++...+.... ++. +....+..|.
T Consensus 19 iD~~~l~~~i~~l~~~Gv------~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~---------~~~vi~gv~~~~~~ 83 (292)
T PRK03170 19 VDFAALRKLVDYLIANGT------DGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG---------RVPVIAGTGSNSTA 83 (292)
T ss_pred cCHHHHHHHHHHHHHcCC------CEEEECCcCCccccCCHHHHHHHHHHHHHHhCC---------CCcEEeecCCchHH
Confidence 344444444444443332 244443333 58888888888877663221 122 2333333443
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCc-chHH----HHHHHHHhCCCc
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSS-NTSH----LQEIAEDRGIPS 269 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSS-NT~r----L~eia~~~~~~t 269 (339)
+=.+-++....-.+|.++++--.-+. +-.. .-+||+....|.
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv 130 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPI 130 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 33333333322248888887654322 2233 444665554554
No 360
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=20.89 E-value=1.9e+02 Score=27.89 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=64.1
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
+++++.--++.-.-|.+..-.=..++.+.+ + ..++......=......++++++++...+|++|+.|...+ .-
T Consensus 3 ~v~~~~~g~~~D~g~n~~~~~G~~~~~~~~-~---~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~~~---~~ 75 (306)
T PF02608_consen 3 KVALLDPGGINDKGFNQSAYEGLKRAEKEL-D---GIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFEYS---DA 75 (306)
T ss_dssp EEEEESSS-CCCSSHHHHHHHHHHHHHHHC-T---TEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGGGH---HH
T ss_pred EEEEEECCCCCCccHHHHHHHHHHHHHHHc-C---CceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHHHH---HH
Confidence 455555555544444444332223334444 1 1123333332225678888899998788999999998777 57
Q ss_pred HHHHHHHhCCCce--eeCCCCccCCCCcchhhhccchhhhhhcccc-------CCCcEEEEee---cCCCcHH
Q 019556 258 LQEIAEDRGIPSY--WIDSEKRIGPGNKIAYKLMHGELVEKENWLP-------KGQITIGITS---GASTPDK 318 (339)
Q Consensus 258 L~eia~~~~~~ty--~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~-------~~~~~VGITA---GASTP~~ 318 (339)
|.++|++. |.+. ++++..+-+..+...+... .++..+|- ....+||..+ |...|..
T Consensus 76 ~~~vA~~y-Pd~~F~~~d~~~~~~~~Nv~~~~f~----~~e~~fLaG~~Aa~~tkt~~vg~ig~i~G~~~p~~ 143 (306)
T PF02608_consen 76 LQEVAKEY-PDTKFIIIDGYIDAPEPNVISITFR----EEEASFLAGYLAALMTKTGKVGFIGDIGGMDIPPV 143 (306)
T ss_dssp HHHHHTC--TTSEEEEESS---ST-TTEEEEEE-----HHHHHHHHHHHHHHHHSSTEEEEEEEEES--SCTT
T ss_pred HHHHHHHC-CCCEEEEEecCcCCCCCcEEEEEcc----ccchhHHHHHHHHHHhccCcccccccccCCCcHhH
Confidence 77899888 5553 3333322221122222211 11113330 2357899999 8888854
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=20.84 E-value=1.5e+02 Score=26.44 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccC
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG 279 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~ 279 (339)
.++|+||..|.=|.-=.+++.+.+.+.++|-+..=.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~ 39 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFD 39 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCCh
Confidence 5799999999999988888888777788888876333
No 362
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=20.73 E-value=1.3e+02 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=18.0
Q ss_pred CCCcc----hHHHHHHHHHHhcCCCeEEEEec
Q 019556 84 TTCPW----VSKVWTSVEKHKKGDYTSIIHGK 111 (339)
Q Consensus 84 aTCP~----V~kv~~~~~~~~~~Gy~iIIiG~ 111 (339)
.||-+ ..|+.+.++++.+.|-.||+-|=
T Consensus 43 nTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc 74 (430)
T TIGR01125 43 NTCGFIEDARQESIDTIGELADAGKKVIVTGC 74 (430)
T ss_pred eCCCccchHHHHHHHHHHHHHhcCCCEEEECC
Confidence 46666 55666677777767766666553
No 363
>PRK06186 hypothetical protein; Validated
Probab=20.69 E-value=4.1e+02 Score=25.30 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=51.0
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH-
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS- 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~- 256 (339)
+|++|-==|...+-+..|.+.|+-. ..... ..-++.. -+++.--.+ ..| +.+|.+||.||..+-.+.
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha--~~~~~--~~~~i~w----i~s~~l~~~--~~l--~~~dgilvpgGfg~rg~~G 70 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLA--AAVLG--LPVDYEW----LPTPEITDP--EDL--AGFDGIWCVPGSPYRNDDG 70 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHH--HHhcC--CeeEEEE----EchhhcCCh--hhH--hhCCeeEeCCCCCcccHhH
Confidence 6788887788889999999999752 11111 1111222 222111111 146 369999999998877765
Q ss_pred --HHHHHHHHhCCCce
Q 019556 257 --HLQEIAEDRGIPSY 270 (339)
Q Consensus 257 --rL~eia~~~~~~ty 270 (339)
.+.+-|++++.|.+
T Consensus 71 ki~ai~~Are~~iP~L 86 (229)
T PRK06186 71 ALTAIRFARENGIPFL 86 (229)
T ss_pred HHHHHHHHHHcCCCeE
Confidence 67778888877755
No 364
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.58 E-value=1.5e+02 Score=23.93 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=29.6
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++-|++|+|.- -+|.++.+.++.|++.|.++.-|-+..
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 46798888864 456677888999999998888887764
No 365
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=20.50 E-value=2.4e+02 Score=25.82 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=34.6
Q ss_pred CEEEECCCCCCHHHHHHHHhcCCcEEeCCCcch-HHHHHHHHHHhcCCCeEEEE
Q 019556 57 DVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV-SKVWTSVEKHKKGDYTSIIH 109 (339)
Q Consensus 57 ~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V-~kv~~~~~~~~~~Gy~iIIi 109 (339)
.++|+..-..+++..+.|+++|+.++. |+-- -.+....+++.++|+.-|++
T Consensus 91 ~~~v~t~~~~~~~~~~~l~~~gv~vi~--~~~~~~dl~~~l~~L~~~g~~~vlv 142 (210)
T TIGR01508 91 KTIIATSEDEPEEKVEELEDKGVEVVK--FGEGRVDLKKLLDILYDKGVRRLMV 142 (210)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCEEEE--eCCCCcCHHHHHHHHHHCCCCEEEE
Confidence 567777667777777888888998874 3211 13456677777778766665
No 366
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=20.49 E-value=6.4e+02 Score=23.84 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=51.2
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc-cCCCEEEECCCCCCHHHHH------HHH-
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMV------TLN- 75 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~------~l~- 75 (339)
+|...++. +-.|+.+. .++..++.|.+.|+...++. .++ ..-| +||-+---+..+.+ .+.
T Consensus 11 mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~g~~~~~s~------~~~~~~ad-vVil~vp~~~~~~~v~~g~~~l~~ 78 (288)
T TIGR01692 11 MAANLLKA--GHPVRVFD---LFPDAVEEAVAAGAQAAASP------AEAAEGAD-RVITMLPAGQHVISVYSGDEGILP 78 (288)
T ss_pred HHHHHHhC--CCeEEEEe---CCHHHHHHHHHcCCeecCCH------HHHHhcCC-EEEEeCCChHHHHHHHcCcchHhh
Confidence 45555543 33677774 57888999999998766542 222 2234 33333322222222 222
Q ss_pred --hcCCcEEeCCCcchHHHHHHHHHHhcCCCe
Q 019556 76 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYT 105 (339)
Q Consensus 76 --~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~ 105 (339)
..|-.+||++==...-.++..+.+.+.|-.
T Consensus 79 ~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~ 110 (288)
T TIGR01692 79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAV 110 (288)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 346677887755566666666666666644
No 367
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=20.41 E-value=1.8e+02 Score=23.75 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=14.9
Q ss_pred EEEEcCCCCcchHHHHHHHHH
Q 019556 244 ILVVGGWNSSNTSHLQEIAED 264 (339)
Q Consensus 244 miVVGG~nSSNT~rL~eia~~ 264 (339)
+||.|+ .+.||+++++...+
T Consensus 2 ~Iiy~S-~tGnT~~~A~~i~~ 21 (140)
T TIGR01753 2 LIVYAS-MTGNTEEMANIIAE 21 (140)
T ss_pred EEEEEC-CCcHHHHHHHHHHH
Confidence 566666 69999999876544
No 368
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=1.3e+02 Score=21.94 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCH-HHHHHHHhcCCcE
Q 019556 28 TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV-EEMVTLNNKNVQI 81 (339)
Q Consensus 28 ~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~-~~~~~l~~~g~~i 81 (339)
.+.+.|.+.|+.+..-- .... .+...+.++. -.+ ...+.|+++|++|
T Consensus 17 ~v~~~l~~~~inI~~i~----~~~~-~~~~~~rl~~--~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 17 AVTEILSEAGINIRALS----IADT-SEFGILRLIV--SDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHCCCCEEEEE----EEec-CCCCEEEEEE--CCHHHHHHHHHHCCCEE
Confidence 46677888888765310 0000 0112344444 334 7788888888876
No 369
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=20.40 E-value=1.1e+02 Score=27.03 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=41.8
Q ss_pred EEEEcC----CCCcchHHHHHHHHHhCCCceeeCCC-CccCCCCcchhhhccchhhhhhcccc-CCCcEEEEeecCC-Cc
Q 019556 244 ILVVGG----WNSSNTSHLQEIAEDRGIPSYWIDSE-KRIGPGNKIAYKLMHGELVEKENWLP-KGQITIGITSGAS-TP 316 (339)
Q Consensus 244 miVVGG----~nSSNT~rL~eia~~~~~~ty~Ie~~-~el~~~~~~~~~~~~~~~~~~~~wl~-~~~~~VGITAGAS-TP 316 (339)
+|++|+ ...+|+.-|....++.|.......-. +|... +. ..-.+|+. .++..|=+|.|+| +|
T Consensus 9 vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~---i~--------~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 9 ILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQ---IR--------AQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred EEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHH---HH--------HHHHHHHhcCCCCEEEECCCcCCCC
Confidence 445665 56778999999999988654333222 22111 10 00114541 3577777776666 46
Q ss_pred HHHHHHHHHHH
Q 019556 317 DKAVEDVLKKV 327 (339)
Q Consensus 317 ~~lI~eVi~~l 327 (339)
...+.+++..+
T Consensus 78 ~D~t~eal~~l 88 (163)
T TIGR02667 78 RDVTPEALEPL 88 (163)
T ss_pred CCCcHHHHHHH
Confidence 66677776666
No 370
>PRK06242 flavodoxin; Provisional
Probab=20.36 E-value=2.9e+02 Score=23.12 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcchHHHHHHHHH-hCCCceeeC
Q 019556 243 LILVVGGWNSSNTSHLQEIAED-RGIPSYWID 273 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~-~~~~ty~Ie 273 (339)
++|+-++..+.||+++++...+ .+...+.|+
T Consensus 3 ~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~ 34 (150)
T PRK06242 3 ALIVYASVHHGNTEKIAKAIAEVLDAEVIDPG 34 (150)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhcCcEEecHH
Confidence 4677777668999999986544 444444444
No 371
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=20.23 E-value=2.1e+02 Score=26.81 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=33.3
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie 273 (339)
.++..|+.-=.. ...+++.+.+ .++|++||||-.-.-. ...|.+.++ .+.+.+.|.
T Consensus 152 P~Vv~FGE~lp~--~~~~~~~~~~-~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN 208 (235)
T cd01408 152 PDIVFFGESLPS--RFFSHMEEDK-EEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLIN 208 (235)
T ss_pred CcEEECCCCCCH--HHHHHHHHHH-hcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEe
Confidence 345555542222 2334455555 5799999999863333 335777776 566666665
No 372
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=20.22 E-value=2.6e+02 Score=25.05 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEe--cCC---ccc-ccccc--ccCCCEEEECCCCCCHHHHHHHHhcCCcEE
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNI--PVE---EGK-KQFDV--VNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v--~~~---~~~-~~~~~--~~~g~~VIIrAHGv~~~~~~~l~~~g~~ii 82 (339)
+.++|+.|+ ..-+.|++.|+... ... ++. ..+.. +....++++|+-+......+.|++.|..++
T Consensus 81 ~~~~~avG~-----~Ta~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~ 152 (249)
T PRK05928 81 NKKYAAIGE-----KTALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVD 152 (249)
T ss_pred CCEEEEECH-----HHHHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEe
Confidence 457999986 45689999998754 111 010 11111 222345677777777788899999998764
No 373
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=20.21 E-value=86 Score=26.08 Aligned_cols=31 Identities=10% Similarity=0.344 Sum_probs=22.3
Q ss_pred CEEEECCCCCCHH-------------HHHHHHhcCCcEEeCCCcc
Q 019556 57 DVVVLPAFGAAVE-------------EMVTLNNKNVQIVDTTCPW 88 (339)
Q Consensus 57 ~~VIIrAHGv~~~-------------~~~~l~~~g~~iiDaTCP~ 88 (339)
++++|.--+||++ ..+.+++.|++|| .+|||
T Consensus 38 ~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kii-P~Csf 81 (99)
T COG2388 38 NLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKII-PLCSF 81 (99)
T ss_pred CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEc-ccchH
Confidence 4556655555544 4678899999999 78994
No 374
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=20.18 E-value=1.1e+02 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=24.2
Q ss_pred CcEEeCCCcchHHHHHHHHHHhcCCCeEEEE
Q 019556 79 VQIVDTTCPWVSKVWTSVEKHKKGDYTSIIH 109 (339)
Q Consensus 79 ~~iiDaTCP~V~kv~~~~~~~~~~Gy~iIIi 109 (339)
..+.|-+||+=++.|..+.+ ...++++.++
T Consensus 82 ~~f~D~~Cp~C~~~~~~l~~-~~~~v~v~~~ 111 (197)
T cd03020 82 YVFTDPDCPYCRKLEKELKP-NADGVTVRIF 111 (197)
T ss_pred EEEECCCCccHHHHHHHHhh-ccCceEEEEE
Confidence 34699999999999999987 4567777665
No 375
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=4.8e+02 Score=27.19 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=66.5
Q ss_pred hCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCC----HHHHHHHHhcCCcE-EeCC
Q 019556 11 QFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAA----VEEMVTLNNKNVQI-VDTT 85 (339)
Q Consensus 11 ~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~----~~~~~~l~~~g~~i-iDaT 85 (339)
.+.++++--.|==+=-...+..|++.|+.... + ..-+++|+....-. -.+-+.|++.|+.+ +|-.
T Consensus 301 ~~gG~~~pavGFaiGveRl~~~l~~~~~~~~~---------~-~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~ 370 (429)
T COG0124 301 EFGGKPTPAVGFAIGVERLILALEEEGKEDPV---------E-TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYS 370 (429)
T ss_pred HhCCCCCCceeEehHHHHHHHHHHHcCCCCCc---------C-CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEec
Confidence 34455666666666677888899999982111 1 12456677766654 34678888989988 8887
Q ss_pred CcchHHHHHHHHHHhcCCC-eEEEEecCCCceeeeeccccCcEEEEcChH
Q 019556 86 CPWVSKVWTSVEKHKKGDY-TSIIHGKYSHEETVATASFAGKYIIVKNMK 134 (339)
Q Consensus 86 CP~V~kv~~~~~~~~~~Gy-~iIIiG~~~HpEv~gi~g~~~~~~vv~~~~ 134 (339)
+--.++-.+.|.+. |. .+||+|+.+ .+...+.|+|+.
T Consensus 371 ~r~~k~q~k~A~~~---g~~~~viiGe~E---------~~~g~v~vKdl~ 408 (429)
T COG0124 371 GRKLKKQFKYADKL---GARFAVILGEDE---------LANGVVTVKDLA 408 (429)
T ss_pred cccHHHHHHHHHHC---CCCEEEEEcchH---------HhcCCEEEeeCC
Confidence 76655555555544 44 677888776 345567777754
No 376
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=20.16 E-value=1.1e+02 Score=29.64 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 223 CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 223 C~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
|+.. +=.+++.+|.+ + .++.|||...|+.+.-+..+|...+.|-.
T Consensus 46 ~d~~-~~~~~~c~ll~-~-~V~aiiGp~~s~~~~~~~~~~~~~~iP~i 90 (382)
T cd06380 46 SDSF-ALTNAICSQLS-R-GVFAIFGSYDKSSVNTLTSYSDALHVPFI 90 (382)
T ss_pred cchH-HHHHHHHHHHh-c-CcEEEEecCcHHHHHHHHHHHhcCCCCeE
Confidence 4444 33345555553 3 67888999998888889999988877654
No 377
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.12 E-value=6.3e+02 Score=22.57 Aligned_cols=81 Identities=15% Similarity=0.161 Sum_probs=42.0
Q ss_pred HHH-HHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC-ccCCCCcchhhh-ccch-hhhhhccccCC
Q 019556 228 ERQ-DAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHGE-LVEKENWLPKG 303 (339)
Q Consensus 228 ~RQ-~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~-el~~~~~~~~~~-~~~~-~~~~~~wl~~~ 303 (339)
++| +.++.+.+..+|.+|+.+... |-..+.++. +.+.|...|.+.. +..- .-+.... ..++ +.+ ..+..|
T Consensus 42 ~~~~~~i~~~~~~~~dgiii~~~~~--~~~~~~~~~-~~~~pvV~i~~~~~~~~~-~~V~~d~~~~~~~~~~--~L~~~G 115 (269)
T cd06293 42 ERELTYLRWLDTNHVDGLIFVTNRP--DDGALAKLI-NSYGNIVLVDEDVPGAKV-PKVFCDNEQGGRLATR--HLARAG 115 (269)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCC--CHHHHHHHH-hcCCCEEEECCCCCCCCC-CEEEECCHHHHHHHHH--HHHHCC
Confidence 444 334455557899999997432 224454444 4568999998642 2110 0011000 1111 111 223347
Q ss_pred CcEEEEeecCC
Q 019556 304 QITIGITSGAS 314 (339)
Q Consensus 304 ~~~VGITAGAS 314 (339)
.++||+..|..
T Consensus 116 ~~~i~~i~~~~ 126 (269)
T cd06293 116 HRRIAFVGGPD 126 (269)
T ss_pred CceEEEEecCc
Confidence 89999887743
No 378
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.02 E-value=2.9e+02 Score=27.11 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=48.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhh-hhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la-~~~vD~miVVGG~nSSNT 255 (339)
+++.+|+-.+. ++.+.+.+++.+.. ....+..|+.+|.-...++ +.+.+ ...+|++|-|||-.+-.+
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~------~~~~~~~~~~~p~~~~v~~--~~~~~~~~~~D~iIavGGGs~~D~ 91 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAA------GEAFVLRYDGECSEENIER--LAAQAKENGADVIIGIGGGKVLDT 91 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhc------CeEEEEEeCCCCCHHHHHH--HHHHHHhcCCCEEEEeCCcHHHHH
Confidence 46777774433 23344444443311 1122344555533333332 22222 346999999999999999
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
-|..... .+.|-+.|-|-
T Consensus 92 aK~ia~~--~~~p~i~VPTT 109 (347)
T cd08172 92 AKAVADR--LGVPVITVPTL 109 (347)
T ss_pred HHHHHHH--hCCCEEEecCc
Confidence 9987665 36677777765
Done!