Query 019556
Match_columns 339
No_of_seqs 116 out of 1068
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnf_A ISPH, LYTB, 4-hydroxy-3 100.0 1.3E-92 4.5E-97 677.3 26.7 264 1-335 19-286 (297)
2 3szu_A ISPH, 4-hydroxy-3-methy 100.0 3.7E-92 1.3E-96 681.5 26.7 266 1-332 30-299 (328)
3 3szu_A ISPH, 4-hydroxy-3-methy 92.5 1.4 4.8E-05 42.6 12.4 155 14-201 125-296 (328)
4 3dnf_A ISPH, LYTB, 4-hydroxy-3 91.8 3.3 0.00011 39.5 14.0 168 86-331 13-183 (297)
5 1vq8_F 50S ribosomal protein L 85.2 2.4 8.3E-05 34.5 7.0 73 239-330 44-119 (120)
6 3k4h_A Putative transcriptiona 83.4 22 0.00076 31.0 14.3 137 177-327 9-154 (292)
7 1rlg_A 50S ribosomal protein L 83.3 3.5 0.00012 33.5 7.2 75 238-331 41-118 (119)
8 3dbi_A Sugar-binding transcrip 83.2 18 0.00063 32.7 12.9 134 177-322 62-199 (338)
9 3huu_A Transcription regulator 81.9 27 0.00093 30.9 13.6 138 177-327 23-167 (305)
10 3k9c_A Transcriptional regulat 81.6 10 0.00035 33.6 10.3 124 177-316 13-138 (289)
11 1xbi_A 50S ribosomal protein L 80.7 3.9 0.00013 33.4 6.6 72 239-331 44-119 (120)
12 3qk7_A Transcriptional regulat 80.6 16 0.00054 32.4 11.2 138 177-328 7-150 (294)
13 3tb6_A Arabinose metabolism tr 79.3 31 0.0011 30.0 13.0 128 177-315 16-148 (298)
14 2fc3_A 50S ribosomal protein L 79.2 5.8 0.0002 32.5 7.2 75 239-332 43-120 (124)
15 2h3h_A Sugar ABC transporter, 78.6 31 0.0011 30.6 12.6 130 178-319 3-138 (313)
16 3ksm_A ABC-type sugar transpor 77.9 31 0.0011 29.6 12.0 143 178-329 2-152 (276)
17 2ale_A SNU13, NHP2/L7AE family 75.5 6.5 0.00022 32.9 6.6 78 239-334 47-128 (134)
18 3gv0_A Transcriptional regulat 74.4 44 0.0015 29.2 13.3 137 177-326 9-149 (288)
19 3m9w_A D-xylose-binding peripl 74.3 46 0.0016 29.4 13.0 137 177-324 3-143 (313)
20 3o74_A Fructose transport syst 73.8 42 0.0014 28.7 13.0 139 177-328 3-144 (272)
21 3egc_A Putative ribose operon 73.7 31 0.0011 30.1 11.1 131 177-321 9-142 (291)
22 2rgy_A Transcriptional regulat 73.5 47 0.0016 29.1 12.2 129 177-319 9-143 (290)
23 3brq_A HTH-type transcriptiona 73.4 45 0.0015 28.9 12.7 129 177-318 20-153 (296)
24 3hcw_A Maltose operon transcri 73.1 48 0.0017 29.1 12.5 136 177-325 8-152 (295)
25 4eyg_A Twin-arginine transloca 72.1 13 0.00046 33.6 8.4 94 178-274 8-104 (368)
26 3uug_A Multiple sugar-binding 72.1 53 0.0018 29.1 12.6 141 177-327 4-154 (330)
27 3d8u_A PURR transcriptional re 70.7 51 0.0017 28.3 14.0 129 177-319 4-135 (275)
28 2iks_A DNA-binding transcripti 70.4 39 0.0013 29.6 11.0 133 177-322 21-156 (293)
29 3jy6_A Transcriptional regulat 70.0 54 0.0018 28.4 13.9 124 177-315 8-134 (276)
30 3e3m_A Transcriptional regulat 68.9 65 0.0022 29.3 12.5 125 177-315 71-198 (355)
31 3h75_A Periplasmic sugar-bindi 68.7 21 0.00073 32.4 9.0 91 177-277 4-97 (350)
32 3bbl_A Regulatory protein of L 67.8 38 0.0013 29.7 10.2 130 177-319 5-140 (287)
33 8abp_A L-arabinose-binding pro 67.4 27 0.00091 30.7 9.2 86 178-274 4-90 (306)
34 2aif_A Ribosomal protein L7A; 66.7 5.3 0.00018 33.3 4.1 69 243-329 59-132 (135)
35 3lft_A Uncharacterized protein 66.2 65 0.0022 28.4 11.6 89 177-274 3-91 (295)
36 3ipc_A ABC transporter, substr 65.0 22 0.00076 32.0 8.3 93 178-273 4-100 (356)
37 3rot_A ABC sugar transporter, 64.3 74 0.0025 27.9 14.2 142 177-328 4-154 (297)
38 3o85_A Ribosomal protein L7AE; 62.2 23 0.00079 28.9 7.1 72 239-330 46-121 (122)
39 3i45_A Twin-arginine transloca 62.2 39 0.0013 31.0 9.5 94 177-273 6-104 (387)
40 3obb_A Probable 3-hydroxyisobu 60.9 45 0.0015 30.9 9.7 93 4-107 18-119 (300)
41 3hut_A Putative branched-chain 60.4 29 0.00098 31.3 8.1 95 177-274 5-104 (358)
42 3g1w_A Sugar ABC transporter; 59.5 54 0.0018 28.7 9.6 128 177-315 5-138 (305)
43 3d8t_A Uroporphyrinogen-III sy 58.9 74 0.0025 28.7 10.7 67 15-86 117-187 (286)
44 2rjo_A Twin-arginine transloca 57.9 99 0.0034 27.6 11.3 89 177-275 6-97 (332)
45 3jvd_A Transcriptional regulat 57.5 84 0.0029 28.3 10.9 131 177-328 65-198 (333)
46 3td9_A Branched chain amino ac 57.3 33 0.0011 31.0 8.0 149 177-329 17-176 (366)
47 2hsg_A Glucose-resistance amyl 56.9 88 0.003 27.9 10.8 124 177-314 61-187 (332)
48 2ioy_A Periplasmic sugar-bindi 56.8 78 0.0027 27.5 10.2 88 178-275 3-91 (283)
49 3h5l_A Putative branched-chain 56.3 45 0.0016 30.9 9.0 58 214-273 56-114 (419)
50 3eag_A UDP-N-acetylmuramate:L- 56.1 26 0.0009 32.5 7.3 63 14-82 28-94 (326)
51 3l49_A ABC sugar (ribose) tran 55.9 1E+02 0.0034 26.6 13.5 132 177-320 6-141 (291)
52 3o21_A Glutamate receptor 3; p 55.3 23 0.00078 33.2 6.7 54 214-270 43-97 (389)
53 1usg_A Leucine-specific bindin 55.2 62 0.0021 28.7 9.4 94 178-274 4-101 (346)
54 3bil_A Probable LACI-family tr 55.1 1.2E+02 0.0042 27.4 11.6 128 177-318 67-198 (348)
55 3e61_A Putative transcriptiona 54.7 1E+02 0.0035 26.4 12.4 129 177-323 9-141 (277)
56 3l6u_A ABC-type sugar transpor 54.7 1E+02 0.0036 26.5 10.8 91 177-277 9-100 (293)
57 2qh8_A Uncharacterized protein 54.6 42 0.0014 29.9 8.2 89 177-273 9-97 (302)
58 4gbj_A 6-phosphogluconate dehy 54.5 29 0.00099 32.0 7.2 93 4-107 20-119 (297)
59 3o1i_D Periplasmic protein TOR 54.4 58 0.002 28.3 8.9 91 177-276 6-97 (304)
60 2dri_A D-ribose-binding protei 53.9 1.1E+02 0.0037 26.4 13.0 90 177-276 2-92 (271)
61 3kjx_A Transcriptional regulat 53.6 89 0.0031 28.1 10.3 123 177-314 69-195 (344)
62 3lop_A Substrate binding perip 53.3 53 0.0018 29.7 8.7 96 178-275 7-108 (364)
63 2jnb_A NHP2-like protein 1; sp 52.9 5 0.00017 34.1 1.5 73 239-330 65-142 (144)
64 3h5o_A Transcriptional regulat 52.7 1.3E+02 0.0044 27.0 12.2 125 177-316 63-190 (339)
65 3kke_A LACI family transcripti 52.5 1.2E+02 0.0041 26.6 12.6 136 177-327 16-154 (303)
66 4f06_A Extracellular ligand-bi 51.8 4.8 0.00017 37.3 1.4 58 214-272 45-102 (371)
67 3n0w_A ABC branched chain amin 51.8 44 0.0015 30.5 7.9 92 178-272 8-103 (379)
68 2x7x_A Sensor protein; transfe 51.5 1.3E+02 0.0045 26.7 11.6 127 177-315 7-139 (325)
69 3c3k_A Alanine racemase; struc 51.3 1.2E+02 0.0042 26.3 13.3 130 177-321 9-141 (285)
70 2cc0_A Acetyl-xylan esterase; 51.3 1E+02 0.0035 26.1 9.8 77 16-112 97-185 (195)
71 3n0x_A Possible substrate bind 51.0 12 0.00042 34.4 4.0 54 214-270 47-101 (374)
72 1wcw_A Uroporphyrinogen III sy 50.2 73 0.0025 28.0 8.9 67 15-86 92-162 (261)
73 3qek_A NMDA glutamate receptor 49.9 51 0.0018 30.2 8.1 55 215-271 40-99 (384)
74 3brs_A Periplasmic binding pro 49.8 1.2E+02 0.0043 26.0 11.2 92 177-275 6-99 (289)
75 4gnr_A ABC transporter substra 49.7 9.5 0.00033 34.6 3.0 63 214-278 49-112 (353)
76 3i09_A Periplasmic branched-ch 49.3 38 0.0013 30.8 7.0 93 178-272 6-101 (375)
77 3d02_A Putative LACI-type tran 48.2 54 0.0018 28.6 7.7 89 177-275 5-95 (303)
78 3g85_A Transcriptional regulat 48.1 33 0.0011 29.8 6.2 132 177-323 12-146 (289)
79 2fn9_A Ribose ABC transporter, 47.8 1.4E+02 0.0046 25.8 10.5 89 177-275 3-92 (290)
80 3qfa_C Thioredoxin; protein-pr 47.8 48 0.0016 25.1 6.5 44 184-237 14-57 (116)
81 3hsy_A Glutamate receptor 2; l 47.6 11 0.00039 34.9 3.2 109 215-329 35-146 (376)
82 3clk_A Transcription regulator 47.3 87 0.003 27.2 8.9 123 177-314 9-135 (290)
83 2k6g_A Replication factor C su 47.3 54 0.0018 26.2 6.8 61 13-83 34-97 (109)
84 2vk2_A YTFQ, ABC transporter p 46.6 1.4E+02 0.0047 26.2 10.2 89 177-275 3-92 (306)
85 3h5t_A Transcriptional regulat 46.3 67 0.0023 29.3 8.3 121 177-311 69-196 (366)
86 3snr_A Extracellular ligand-bi 46.3 19 0.00065 32.2 4.4 59 214-275 43-102 (362)
87 3miz_A Putative transcriptiona 46.2 43 0.0015 29.4 6.7 137 177-328 14-155 (301)
88 3sg0_A Extracellular ligand-bi 45.9 21 0.00072 32.3 4.7 92 177-274 28-121 (386)
89 3hs3_A Ribose operon repressor 44.5 1.4E+02 0.0047 25.8 9.8 130 177-327 11-145 (277)
90 3lkb_A Probable branched-chain 44.5 67 0.0023 29.3 8.0 94 178-275 9-107 (392)
91 3l4e_A Uncharacterized peptida 44.0 16 0.00056 32.2 3.5 94 177-314 28-124 (206)
92 3ff4_A Uncharacterized protein 43.6 33 0.0011 27.9 5.1 30 59-89 86-115 (122)
93 1gud_A ALBP, D-allose-binding 43.6 94 0.0032 27.1 8.6 90 178-275 3-93 (288)
94 2fvy_A D-galactose-binding per 42.9 1.4E+02 0.0047 25.9 9.5 90 177-275 3-93 (309)
95 3aek_A Light-independent proto 42.1 1.1E+02 0.0036 29.9 9.3 72 15-89 184-261 (437)
96 2fep_A Catabolite control prot 42.0 1.7E+02 0.0059 25.4 12.8 124 177-314 17-143 (289)
97 2p9j_A Hypothetical protein AQ 41.9 60 0.0021 25.8 6.5 73 27-119 42-115 (162)
98 3on1_A BH2414 protein; structu 41.7 71 0.0024 24.7 6.6 67 239-328 33-100 (101)
99 2o20_A Catabolite control prot 41.5 1.9E+02 0.0065 25.7 14.0 128 177-318 64-194 (332)
100 3gbv_A Putative LACI-family tr 41.5 1.7E+02 0.0058 25.2 12.5 93 177-275 9-103 (304)
101 1eiw_A Hypothetical protein MT 41.3 22 0.00075 28.8 3.6 45 234-280 34-83 (111)
102 1tjy_A Sugar transport protein 41.2 1.3E+02 0.0044 26.8 9.2 135 177-320 4-144 (316)
103 3j21_Z 50S ribosomal protein L 41.1 60 0.0021 25.0 6.1 42 238-280 29-72 (99)
104 2hqb_A Transcriptional activat 40.7 1.5E+02 0.0051 26.4 9.6 140 177-328 6-149 (296)
105 1t1j_A Hypothetical protein; s 40.6 15 0.0005 30.6 2.5 39 234-273 77-118 (125)
106 3hn7_A UDP-N-acetylmuramate-L- 39.7 55 0.0019 32.6 7.0 63 14-82 43-108 (524)
107 4evq_A Putative ABC transporte 39.3 65 0.0022 29.0 6.9 94 177-273 17-113 (375)
108 4f11_A Gamma-aminobutyric acid 39.3 13 0.00043 35.0 2.1 57 214-271 58-114 (433)
109 2vhw_A Alanine dehydrogenase; 39.0 1.6E+02 0.0055 27.9 9.9 42 50-91 82-132 (377)
110 3cpq_A 50S ribosomal protein L 38.9 63 0.0021 25.5 6.0 42 238-280 35-78 (110)
111 4hv4_A UDP-N-acetylmuramate--L 38.3 1.2E+02 0.004 29.9 9.1 62 14-82 46-109 (494)
112 3imk_A Putative molybdenum car 38.3 1E+02 0.0034 26.7 7.4 82 239-330 72-156 (158)
113 3hno_A Pyrophosphate-dependent 37.4 16 0.00056 36.1 2.6 46 227-272 91-139 (419)
114 1jye_A Lactose operon represso 37.3 2.3E+02 0.0079 25.5 12.9 132 177-321 62-196 (349)
115 2j13_A Polysaccharide deacetyl 37.3 1E+02 0.0036 27.4 7.9 26 17-42 150-175 (247)
116 3f4w_A Putative hexulose 6 pho 36.7 1.9E+02 0.0065 24.3 9.7 40 68-109 93-133 (211)
117 2ebu_A Replication factor C su 36.3 83 0.0029 25.3 6.3 62 13-84 24-88 (112)
118 1dbq_A Purine repressor; trans 35.7 2.1E+02 0.0071 24.5 11.6 87 177-275 8-96 (289)
119 1wn2_A Peptidyl-tRNA hydrolase 35.5 23 0.00079 29.0 2.9 61 243-327 56-118 (121)
120 2fqx_A Membrane lipoprotein TM 35.5 1.7E+02 0.0059 26.4 9.2 89 177-276 5-96 (318)
121 1dp4_A Atrial natriuretic pept 35.4 26 0.00089 32.7 3.6 56 214-271 46-106 (435)
122 1vb5_A Translation initiation 35.1 46 0.0016 30.7 5.2 58 53-113 107-170 (276)
123 1pea_A Amidase operon; gene re 34.6 1.6E+02 0.0054 26.8 8.8 96 177-275 8-108 (385)
124 3eaf_A ABC transporter, substr 34.2 34 0.0011 31.5 4.1 95 215-313 51-150 (391)
125 4hwg_A UDP-N-acetylglucosamine 34.2 61 0.0021 30.8 6.1 52 220-274 73-125 (385)
126 3en0_A Cyanophycinase; serine 34.1 23 0.0008 33.2 3.0 31 229-265 101-131 (291)
127 4dll_A 2-hydroxy-3-oxopropiona 34.0 1.9E+02 0.0064 26.4 9.3 91 4-106 46-145 (320)
128 3om0_A Glutamate receptor, ion 33.9 20 0.0007 33.1 2.6 55 214-270 44-99 (393)
129 2kkn_A Uncharacterized protein 33.8 1.5E+02 0.005 24.9 7.9 83 15-118 52-143 (178)
130 3jx9_A Putative phosphoheptose 33.6 35 0.0012 29.5 3.9 59 14-74 38-97 (170)
131 3saj_A Glutamate receptor 1; r 33.3 18 0.00062 33.5 2.1 108 215-329 42-153 (384)
132 1k1e_A Deoxy-D-mannose-octulos 33.2 1.1E+02 0.0038 25.1 6.9 69 26-113 40-109 (180)
133 4fe7_A Xylose operon regulator 33.1 74 0.0025 29.8 6.4 120 177-316 26-151 (412)
134 3mmz_A Putative HAD family hyd 32.6 85 0.0029 25.9 6.1 67 29-114 47-113 (176)
135 3efb_A Probable SOR-operon reg 32.3 1.1E+02 0.0039 27.5 7.4 84 231-321 147-244 (266)
136 2qu7_A Putative transcriptiona 32.3 2.4E+02 0.0083 24.2 10.7 127 177-320 9-138 (288)
137 1rlk_A Hypothetical protein TA 31.9 23 0.0008 28.7 2.3 62 242-327 51-114 (117)
138 3pdu_A 3-hydroxyisobutyrate de 31.6 1E+02 0.0034 27.5 6.8 92 4-107 16-117 (287)
139 1ma3_A SIR2-AF2, transcription 31.4 45 0.0015 30.2 4.4 72 233-332 177-251 (253)
140 3s99_A Basic membrane lipoprot 31.3 2.2E+02 0.0075 26.8 9.5 130 177-317 27-162 (356)
141 3trj_A Phosphoheptose isomeras 31.1 97 0.0033 26.6 6.4 38 239-276 113-151 (201)
142 2xdq_A Light-independent proto 31.1 3.7E+02 0.013 25.9 11.7 81 16-99 198-286 (460)
143 1w41_A 50S ribosomal protein L 31.0 58 0.002 25.2 4.5 42 238-280 30-73 (101)
144 3ij5_A 3-deoxy-D-manno-octulos 31.0 1.2E+02 0.0041 26.2 7.0 68 29-115 84-152 (211)
145 1m2k_A Silent information regu 30.0 52 0.0018 29.8 4.6 34 239-274 176-212 (249)
146 1yc5_A NAD-dependent deacetyla 29.7 53 0.0018 29.6 4.5 34 239-274 179-215 (246)
147 3mn1_A Probable YRBI family ph 29.6 1.6E+02 0.0054 24.4 7.4 67 29-114 54-121 (189)
148 3jyw_G 60S ribosomal protein L 28.9 49 0.0017 26.8 3.8 41 239-280 40-82 (113)
149 3kg2_A Glutamate receptor 2; I 28.8 30 0.001 35.4 3.1 110 215-330 35-147 (823)
150 3o3m_B Beta subunit 2-hydroxya 28.7 46 0.0016 31.9 4.2 29 15-43 230-258 (385)
151 2bon_A Lipid kinase; DAG kinas 28.6 96 0.0033 28.7 6.3 16 239-254 81-96 (332)
152 3v7e_A Ribosome-associated pro 28.4 41 0.0014 25.3 3.0 41 239-280 26-67 (82)
153 4ddd_A Immunogenic protein; ss 27.7 1E+02 0.0035 28.3 6.3 25 306-330 261-285 (327)
154 3k35_A NAD-dependent deacetyla 27.7 75 0.0026 30.3 5.4 41 233-274 200-241 (318)
155 2h78_A Hibadh, 3-hydroxyisobut 27.6 3.2E+02 0.011 24.2 9.5 91 4-106 18-118 (302)
156 1y5e_A Molybdenum cofactor bio 27.6 33 0.0011 29.1 2.6 72 243-327 17-97 (169)
157 1ny1_A Probable polysaccharide 27.6 1.5E+02 0.005 26.2 7.1 86 2-107 120-224 (240)
158 1qpz_A PURA, protein (purine n 27.6 3.3E+02 0.011 24.2 12.2 128 177-318 59-191 (340)
159 3mq4_A Mglur7, metabotropic gl 27.2 33 0.0011 33.2 2.9 30 241-270 116-145 (481)
160 1jdp_A NPR-C, atrial natriuret 27.2 34 0.0012 32.1 2.9 56 214-270 56-112 (441)
161 1s5p_A NAD-dependent deacetyla 27.0 53 0.0018 29.4 4.1 56 215-275 147-203 (235)
162 1c9k_A COBU, adenosylcobinamid 26.9 37 0.0013 29.5 2.9 36 244-280 2-37 (180)
163 2xzm_U Ribosomal protein L7AE 26.9 99 0.0034 25.3 5.4 43 238-280 38-81 (126)
164 3l6d_A Putative oxidoreductase 26.9 1.7E+02 0.0058 26.5 7.6 92 4-107 24-123 (306)
165 3p9z_A Uroporphyrinogen III co 26.5 60 0.0021 28.4 4.2 64 14-82 67-137 (229)
166 2f48_A Diphosphate--fructose-6 25.7 49 0.0017 33.9 3.9 41 227-267 153-194 (555)
167 3gyb_A Transcriptional regulat 25.7 1.8E+02 0.0061 24.9 7.2 121 177-316 6-130 (280)
168 1s3l_A Hypothetical protein MJ 25.5 1.3E+02 0.0043 25.5 6.0 27 15-42 54-82 (190)
169 2lbw_A H/ACA ribonucleoprotein 25.4 78 0.0027 25.5 4.4 42 239-280 35-77 (121)
170 3g0o_A 3-hydroxyisobutyrate de 25.2 3.7E+02 0.013 24.0 10.4 91 4-106 22-123 (303)
171 1kyq_A Met8P, siroheme biosynt 25.2 84 0.0029 29.1 5.1 63 240-317 106-172 (274)
172 2xbl_A Phosphoheptose isomeras 25.1 93 0.0032 25.8 5.0 39 239-277 115-154 (198)
173 2h0a_A TTHA0807, transcription 24.9 1.8E+02 0.0063 24.6 7.1 120 179-314 2-124 (276)
174 1x92_A APC5045, phosphoheptose 24.5 63 0.0021 27.1 3.9 38 239-276 112-150 (199)
175 1vpq_A Hypothetical protein TM 24.4 50 0.0017 30.5 3.4 48 20-68 157-209 (273)
176 3v7q_A Probable ribosomal prot 24.2 71 0.0024 24.8 3.8 42 239-280 34-75 (101)
177 4a3s_A 6-phosphofructokinase; 23.9 78 0.0027 29.9 4.7 42 228-272 81-122 (319)
178 2e4u_A Metabotropic glutamate 23.6 57 0.0019 32.1 3.9 30 241-270 116-145 (555)
179 3pef_A 6-phosphogluconate dehy 23.6 1.8E+02 0.006 25.9 6.9 91 4-106 16-116 (287)
180 2zv3_A PTH, peptidyl-tRNA hydr 23.5 24 0.00081 28.6 0.9 61 243-327 50-112 (115)
181 1xty_A PTH, peptidyl-tRNA hydr 23.2 51 0.0017 26.8 2.9 61 243-327 55-117 (120)
182 3u31_A SIR2A, transcriptional 22.9 1.1E+02 0.0037 28.6 5.4 36 239-274 215-251 (290)
183 2pjk_A 178AA long hypothetical 22.8 38 0.0013 29.1 2.2 67 250-327 37-106 (178)
184 1z0s_A Probable inorganic poly 22.4 1.2E+02 0.004 28.2 5.6 21 178-201 31-51 (278)
185 3fwz_A Inner membrane protein 22.3 1.5E+02 0.0051 23.3 5.6 74 55-136 7-83 (140)
186 1tk9_A Phosphoheptose isomeras 22.1 87 0.003 25.8 4.2 39 239-277 109-148 (188)
187 2xhz_A KDSD, YRBH, arabinose 5 21.9 84 0.0029 25.8 4.1 39 239-277 95-134 (183)
188 2y8u_A Chitin deacetylase; hyd 21.9 3.6E+02 0.012 23.5 8.6 27 16-42 125-151 (230)
189 2yva_A DNAA initiator-associat 21.8 1.2E+02 0.0039 25.3 5.0 38 239-276 108-146 (196)
190 1y81_A Conserved hypothetical 21.5 80 0.0028 25.7 3.8 11 70-80 85-95 (138)
191 3doj_A AT3G25530, dehydrogenas 21.5 2E+02 0.0068 26.0 6.9 91 4-106 36-136 (310)
192 4es6_A Uroporphyrinogen-III sy 21.4 1E+02 0.0035 27.1 4.7 66 15-85 87-163 (254)
193 1pjq_A CYSG, siroheme synthase 21.4 1.2E+02 0.004 29.7 5.6 58 240-317 72-134 (457)
194 4em8_A Ribose 5-phosphate isom 21.1 3.3E+02 0.011 23.1 7.6 100 69-201 24-131 (148)
195 1pg5_A Aspartate carbamoyltran 21.0 96 0.0033 29.1 4.7 58 56-114 95-160 (299)
196 3lk7_A UDP-N-acetylmuramoylala 21.0 94 0.0032 30.1 4.8 85 27-115 46-150 (451)
197 3dfz_A SIRC, precorrin-2 dehyd 20.7 1.1E+02 0.0036 27.4 4.7 73 240-333 91-167 (223)
198 2cok_A Poly [ADP-ribose] polym 20.7 3.2E+02 0.011 21.8 7.2 64 13-85 12-78 (113)
199 2qv7_A Diacylglycerol kinase D 20.6 1.4E+02 0.0049 27.5 5.8 19 234-252 74-92 (337)
200 3pki_A NAD-dependent deacetyla 20.6 75 0.0026 30.8 3.9 42 232-274 199-241 (355)
201 3riy_A NAD-dependent deacetyla 20.4 1E+02 0.0036 28.2 4.7 41 233-274 206-247 (273)
202 1m3s_A Hypothetical protein YC 20.3 85 0.0029 25.9 3.8 39 239-277 78-117 (186)
203 3h6g_A Glutamate receptor, ion 20.2 37 0.0013 31.3 1.6 38 232-271 63-100 (395)
204 3sho_A Transcriptional regulat 20.0 96 0.0033 25.5 4.1 39 239-277 86-125 (187)
No 1
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=100.00 E-value=1.3e-92 Score=677.30 Aligned_cols=264 Identities=29% Similarity=0.483 Sum_probs=243.4
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|+++++++ +++||++|||||||+|+++|+++|+.++++ +++++|++|||||||+||+++++|+++|++
T Consensus 19 AI~~a~~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~v~~-------~ev~~g~~VIirAHGv~~~v~~~a~~rgl~ 90 (297)
T 3dnf_A 19 AVKLAEESLKES-QGKVYTLGPIIHNPQEVNRLKNLGVFPSQG-------EEFKEGDTVIIRSHGIPPEKEEALRKKGLK 90 (297)
T ss_dssp HHHHHHHHTTTC-CSCEEESSCSSSCHHHHHHHHHHTEEECCS-------SCCCTTCEEEECTTCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhc-CCCEEEeCCcccCHHHHHHHHhCCCEEech-------hhCCCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 478899998876 568999999999999999999999999974 678889999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc---C-cEEEEcChHHHHHhhhhhcCCCCCCCCChHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA---G-KYIIVKNMKEAEYVCDYILGGELNGSSSTKE 156 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~---~-~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~ 156 (339)
|||||||||+|+|++|++++++||+|||||+++||||+|++||+ + +++||++++|++.|.
T Consensus 91 iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~l~---------------- 154 (297)
T 3dnf_A 91 VIDATCPYVKAVHEAVCQLTREGYFVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGEAL---------------- 154 (297)
T ss_dssp EEECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGGGG----------------
T ss_pred EEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHhcC----------------
Confidence 99999999999999999999999999999999999999999999 4 689999999998761
Q ss_pred HHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHh
Q 019556 157 AFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM 236 (339)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~l 236 (339)
+++++++++||||+.++|.+|++.|+++|| ++.++|||||||++||+|+++|
T Consensus 155 ------------------~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p----------~~~~~~tIC~AT~~RQ~av~~l 206 (297)
T 3dnf_A 155 ------------------KHERVGIVAQTTQNEEFFKEVVGEIALWVK----------EVKVINTICNATSLRQESVKKL 206 (297)
T ss_dssp ------------------GCSEEEEEECTTCCHHHHHHHHHHHHHHSS----------EEEEECCCCSHHHHHHHHHHHH
T ss_pred ------------------CCCcEEEEEecCCcHHHHHHHHHHHHHhCC----------CCCCCCCccHHHHHHHHHHHHH
Confidence 126999999999999999999999988644 3668999999999999999999
Q ss_pred hhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCc
Q 019556 237 VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 237 a~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP 316 (339)
| +++|+||||||+|||||+||+|+|++.|+++||||+++||++ +|| .++.+||||||||||
T Consensus 207 a-~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~-----------------~wl-~~~~~VGITAGASTP 267 (297)
T 3dnf_A 207 A-PEVDVMIIIGGKNSGNTRRLYYISKELNPNTYHIETAEELQP-----------------EWF-RGVKRVGISAGASTP 267 (297)
T ss_dssp G-GGSSEEEEESCTTCHHHHHHHHHHHHHCSSEEEESSGGGCCG-----------------GGG-TTCSEEEEEECTTCC
T ss_pred H-hhCCEEEEECCCCCchhHHHHHHHHhcCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCC
Confidence 8 789999999999999999999999999999999999999999 999 699999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 019556 317 DKAVEDVLKKVFEIKREEA 335 (339)
Q Consensus 317 ~~lI~eVi~~l~~~~~~~~ 335 (339)
+|||++|+++|+++.+..+
T Consensus 268 ~~li~eVi~~l~~~~~~~~ 286 (297)
T 3dnf_A 268 DWIIEQVKSRIQEICEGQL 286 (297)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhccCCe
Confidence 9999999999999866544
No 2
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=100.00 E-value=3.7e-92 Score=681.51 Aligned_cols=266 Identities=26% Similarity=0.408 Sum_probs=246.8
Q ss_pred ChhHHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc
Q 019556 1 MAFIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ 80 (339)
Q Consensus 1 ~v~~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ 80 (339)
+|++|+++++++ +++||++|||||||+|+++|+++|+.++++ ++++++|++|||||||+||+++++|+++|++
T Consensus 30 AI~~ae~al~~~-~~~iy~~g~IVHN~~Vv~~L~~~Gv~~ve~------l~ev~~g~~VIirAHGv~~~v~~~a~~rgl~ 102 (328)
T 3szu_A 30 AISIVENALAIY-GAPIYVRHEVVHNRYVVDSLRERGAIFIEQ------ISEVPDGAILIFSAHGVSQAVRNEAKSRDLT 102 (328)
T ss_dssp HHHHHHHHHHHH-CSCEEEESCSSSCHHHHHHHHHTTEEEESS------GGGSCTTCEEEECTTCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhc-CCCEEEeCCCccCHHHHHHHHHCCCEEecc------hhhCCCCCEEEEECCCCCHHHHHHHHHCCCE
Confidence 478899988776 458999999999999999999999999974 7899999999999999999999999999999
Q ss_pred EEeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc--C--cEEEEcChHHHHHhhhhhcCCCCCCCCChHH
Q 019556 81 IVDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA--G--KYIIVKNMKEAEYVCDYILGGELNGSSSTKE 156 (339)
Q Consensus 81 iiDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~--~--~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~ 156 (339)
|||||||||+|+|++|++++++||+|||||+++||||+|++||+ + .+++|++++|++.|.
T Consensus 103 iiDATCP~V~Kvh~~v~~~~~~Gy~iiiiG~~~HpEV~G~~G~~~~~~g~~~vV~~~edv~~l~---------------- 166 (328)
T 3szu_A 103 VFDATCPLVTKVHMEVARASRRGEESILIGHAGHPQVEGTMGQYSNPEGGMYLVESPDDVWKLT---------------- 166 (328)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHTCEEEEESCTTCHHHHHHHTTCCCTTSCEEEECSHHHHHHCC----------------
T ss_pred EEECCCcchHHHHHHHHHHHhCCCEEEEEccCCCceEEeecccccCCCCcEEEECCHHHHHhCC----------------
Confidence 99999999999999999999999999999999999999999999 3 579999999998761
Q ss_pred HHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHh
Q 019556 157 AFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM 236 (339)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~l 236 (339)
+ .+++++++++||||+.++|.+|+++|+++||....+ .+|||||||++||+|+++|
T Consensus 167 ---------------~-~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~~--------~~ntIC~AT~~RQ~av~~l 222 (328)
T 3szu_A 167 ---------------V-KNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGP--------RKDDICYATTNRQEAVRAL 222 (328)
T ss_dssp ---------------C-SCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBCC--------SSCSCCHHHHHHHHHHHHH
T ss_pred ---------------c-CCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccccC--------CCCCcCHHHHHHHHHHHHH
Confidence 1 234699999999999999999999999987765432 4899999999999999999
Q ss_pred hhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCc
Q 019556 237 VEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 237 a~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP 316 (339)
| +++|+||||||+|||||+||+|||++.|+++||||+++||++ +|| .++.+||||||||||
T Consensus 223 A-~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~-----------------~wl-~g~~~VGITAGASTP 283 (328)
T 3szu_A 223 A-EQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE-----------------EWV-KEVKCVGVTAGASAP 283 (328)
T ss_dssp H-HHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH-----------------HHH-TTCSEEEEEECTTCC
T ss_pred H-HhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH-----------------HHh-CCCCEEEEeecCCCC
Confidence 8 789999999999999999999999999999999999999999 999 799999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 019556 317 DKAVEDVLKKVFEIKR 332 (339)
Q Consensus 317 ~~lI~eVi~~l~~~~~ 332 (339)
+|||++|+++|++++.
T Consensus 284 ~~lieeVi~~l~~~~~ 299 (328)
T 3szu_A 284 DILVQNVVARLQQLGG 299 (328)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999998743
No 3
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=92.48 E-value=1.4 Score=42.61 Aligned_cols=155 Identities=12% Similarity=0.182 Sum_probs=113.1
Q ss_pred CCceEEecccccCHHHHHHHHHc-----CCEEecCCccccccccccCCCEEEECCCCCCHH----HHHHHHhcCCcE---
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEM-----AVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVE----EMVTLNNKNVQI--- 81 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~-----Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~----~~~~l~~~g~~i--- 81 (339)
+..|.+.|.==| |.|.--+-.- ++.+|++.++.+.++.-.+....++.=--.+.+ +.+.|+++.-.+
T Consensus 125 Gy~iiiiG~~~H-pEV~G~~G~~~~~~g~~~vV~~~edv~~l~~~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~~ 203 (328)
T 3szu_A 125 GEESILIGHAGH-PQVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGP 203 (328)
T ss_dssp TCEEEEESCTTC-HHHHHHHTTCCCTTSCEEEECSHHHHHHCCCSCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBCC
T ss_pred CCEEEEEccCCC-ceEEeecccccCCCCcEEEECCHHHHHhCCcCCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccccC
Confidence 457999999888 8888877543 467777654333332111134556665555544 566778877665
Q ss_pred -EeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc----CcEEEEcChHHHHHhhhhhcCCCCCCCCChHH
Q 019556 82 -VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA----GKYIIVKNMKEAEYVCDYILGGELNGSSSTKE 156 (339)
Q Consensus 82 -iDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~----~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~ 156 (339)
.|+-|.-...=|..+++++++-.-+|++|.++-.-+.=+...| .+++.|++.+|++.
T Consensus 204 ~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty~Ie~~~el~~------------------ 265 (328)
T 3szu_A 204 RKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQE------------------ 265 (328)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEESSGGGCCH------------------
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEEEeCChHHCCH------------------
Confidence 4999999999999999999999999999999877666555433 35799999998742
Q ss_pred HHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 157 AFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
++ |+ +.+.||+.+=+.-+....+++++.|++
T Consensus 266 ~w---l~-----------g~~~VGITAGASTP~~lieeVi~~l~~ 296 (328)
T 3szu_A 266 EW---VK-----------EVKCVGVTAGASAPDILVQNVVARLQQ 296 (328)
T ss_dssp HH---HT-----------TCSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HH---hC-----------CCCEEEEeecCCCCHHHHHHHHHHHHH
Confidence 11 11 235899999999999999999999987
No 4
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=91.85 E-value=3.3 Score=39.51 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=117.9
Q ss_pred CcchHHHHHHHHHHhcC-CCeEEEEecCCCc-eee-eeccccCcEEEEcChHHHHHhhhhhcCCCCCCCCChHHHHHHHH
Q 019556 86 CPWVSKVWTSVEKHKKG-DYTSIIHGKYSHE-ETV-ATASFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKF 162 (339)
Q Consensus 86 CP~V~kv~~~~~~~~~~-Gy~iIIiG~~~Hp-Ev~-gi~g~~~~~~vv~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (339)
|-=|.+.-+.|.+..++ |-.|.+.|.==|= .|. .+.. ....++++ +++
T Consensus 13 C~GV~RAI~~a~~al~~~~~~iy~~g~IVHN~~Vv~~L~~--~Gv~~v~~-~ev-------------------------- 63 (297)
T 3dnf_A 13 CFGVKRAVKLAEESLKESQGKVYTLGPIIHNPQEVNRLKN--LGVFPSQG-EEF-------------------------- 63 (297)
T ss_dssp CHHHHHHHHHHHHHTTTCCSCEEESSCSSSCHHHHHHHHH--HTEEECCS-SCC--------------------------
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEeCCcccCHHHHHHHHh--CCCEEech-hhC--------------------------
Confidence 77788888888887766 7778888765442 121 1111 01233332 211
Q ss_pred HhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCc
Q 019556 163 KKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVD 242 (339)
Q Consensus 163 ~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD 242 (339)
| .....+++=--.+.+..+ .+++ ..+.+.|+-|+--..=|..+++++ ++-.
T Consensus 64 ---------~---~g~~VIirAHGv~~~v~~----~a~~------------rgl~iiDATCP~V~Kvh~~v~~~~-~~Gy 114 (297)
T 3dnf_A 64 ---------K---EGDTVIIRSHGIPPEKEE----ALRK------------KGLKVIDATCPYVKAVHEAVCQLT-REGY 114 (297)
T ss_dssp ---------C---TTCEEEECTTCCCHHHHH----HHHH------------TTCEEEECCCHHHHHHHHHHHHHH-HTTC
T ss_pred ---------C---CCCEEEEECCCCCHHHHH----HHHH------------CCCEEEeCCCcchHHHHHHHHHHH-hCCC
Confidence 1 123556666556655443 3333 136789999999999999999997 6788
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAVED 322 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI~e 322 (339)
-+|+||-++=.-+.-+.-.|....-.++.|++.+|+.. | ...+++++.+=+--+-+-..+
T Consensus 115 ~iiiiG~~~HpEV~G~~g~~~~~~~~~~vV~~~ed~~~-------------------l-~~~~kv~~vsQTT~s~~~~~~ 174 (297)
T 3dnf_A 115 FVVLVGEKNHPEVIGTLGYLRACNGKGIVVETLEDIGE-------------------A-LKHERVGIVAQTTQNEEFFKE 174 (297)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHTTCCEEEESSGGGGGG-------------------G-GGCSEEEEEECTTCCHHHHHH
T ss_pred EEEEEecCCCceEEeeccccccCCCcEEEEcCHHHHHh-------------------c-CCCCcEEEEEecCCcHHHHHH
Confidence 99999999988888887777432346899999999865 2 134789999999999999999
Q ss_pred HHHHHHhhh
Q 019556 323 VLKKVFEIK 331 (339)
Q Consensus 323 Vi~~l~~~~ 331 (339)
++++|++.+
T Consensus 175 iv~~L~~r~ 183 (297)
T 3dnf_A 175 VVGEIALWV 183 (297)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998754
No 5
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=85.16 E-value=2.4 Score=34.53 Aligned_cols=73 Identities=23% Similarity=0.477 Sum_probs=53.9
Q ss_pred hCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCCC
Q 019556 239 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAST 315 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAST 315 (339)
+++-++|+-.+-.... .++|-.+|++.+.|.+++.+..||.. |+-. ++..++||.+.-.
T Consensus 44 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a 105 (120)
T 1vq8_F 44 GSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGH------------------AAGLEVGSAAAAVTDAGEA 105 (120)
T ss_dssp TCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHH------------------HTTCSSCCSEEEESSCSSC
T ss_pred CCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEecCchH
Confidence 5566665555544333 58999999999999888999888853 3411 4778999977655
Q ss_pred cHHHHHHHHHHHHhh
Q 019556 316 PDKAVEDVLKKVFEI 330 (339)
Q Consensus 316 P~~lI~eVi~~l~~~ 330 (339)
+.+++++.+.++++
T Consensus 106 -~~~~~~l~~~~~~l 119 (120)
T 1vq8_F 106 -DADVEDIADKVEEL 119 (120)
T ss_dssp -HHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhc
Confidence 88899999888876
No 6
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=83.38 E-value=22 Score=30.97 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=75.9
Q ss_pred ceEEEEEccC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHH-HhhhhCCcEEEEEcCCC
Q 019556 177 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY-KMVEEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~-~la~~~vD~miVVGG~n 251 (339)
..|+++...+ +.-.-|..+.+-+.+...+ .+ .++.++++- ...++|..+. .+.+..+|.+|+++...
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHV-EG-----YALYMSTGE--TEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHH-TT-----CEEEECCCC--SHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHH-cC-----CEEEEEeCC--CCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 5799987763 4455677777777654332 22 234444433 2334444433 34457899999987643
Q ss_pred CcchHHHHHHHHHhCCCceeeCCCCccCC-CCcchhhh-ccc-hhhhhhccc-cCCCcEEEEeecCCCcHHHHHHHHHHH
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHG-ELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~~~el~~-~~~~~~~~-~~~-~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eVi~~l 327 (339)
+ ..+++.+++.+.|...+.+..+-.. ..-+.... ..+ .+. ++| ..|.++|++..|.....+..+...-+.
T Consensus 81 ~---~~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~---~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 154 (292)
T 3k4h_A 81 N---DRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVA---EYLISLGHKQIAFIGGGSDLLVTRDRLAGMS 154 (292)
T ss_dssp T---CHHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHH---HHHHHTTCCCEEEEESCTTBHHHHHHHHHHH
T ss_pred C---hHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHH---HHHHHCCCceEEEEeCcccchhHHHHHHHHH
Confidence 3 2567777788999998887643221 11111111 111 111 122 247889999998866555444443333
No 7
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=83.27 E-value=3.5 Score=33.50 Aligned_cols=75 Identities=13% Similarity=0.302 Sum_probs=54.0
Q ss_pred hhCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCC
Q 019556 238 EEKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAS 314 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAS 314 (339)
.+++-++|+-.+-.... .++|-.+|++.+.|.+++.+..||.. |+-. ++..++||.+..
T Consensus 41 ~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~------------------a~G~~~~~~~vaI~d~g~ 102 (119)
T 1rlg_A 41 RGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGR------------------AVGIEVPCASAAIINEGE 102 (119)
T ss_dssp TTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECGG
T ss_pred cCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHHH------------------HhCCCCCeEEEEEecCch
Confidence 35666665555544333 58999999999999888999888853 3411 477899998755
Q ss_pred CcHHHHHHHHHHHHhhh
Q 019556 315 TPDKAVEDVLKKVFEIK 331 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~~ 331 (339)
. +.+.+.+.+.+++++
T Consensus 103 a-~~~~~~l~~~~~~l~ 118 (119)
T 1rlg_A 103 L-RKELGSLVEKIKGLQ 118 (119)
T ss_dssp G-HHHHHHHHHHHHTTT
T ss_pred H-HHHHHHHHHHHHHhh
Confidence 4 578888888887764
No 8
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=83.18 E-value=18 Score=32.65 Aligned_cols=134 Identities=13% Similarity=0.198 Sum_probs=74.0
Q ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++...+ +.-.-|.++..-+.+...+ .+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 131 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEE-KG-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 131 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTSHHHHHHHHHHHHHTTCSEEEECCSSSC--
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--
Confidence 5799887652 4445677777777654332 22 23444442 22334443 445555578999999875443
Q ss_pred hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHH
Q 019556 255 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVED 322 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~e 322 (339)
...+.+.+++.+.|...+....+-....-+.... .++ .+.+- .+..|.++||+..|.....+..+.
T Consensus 132 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R 199 (338)
T 3dbi_A 132 VDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAE--LINAGHQEIAFLTGSMDSPTSIER 199 (338)
T ss_dssp HHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHHHHHHHHHHH--HHHTTCCSEEEECCCTTCHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChHHHHHHHHHH--HHHCCCCEEEEEeCCCCCccHHHH
Confidence 4568888888888988887643221100011001 111 11211 122478999999986544444333
No 9
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=81.86 E-value=27 Score=30.91 Aligned_cols=138 Identities=7% Similarity=0.010 Sum_probs=75.2
Q ss_pred ceEEEEEccC----CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCC
Q 019556 177 VKVGIANQTT----MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~n 251 (339)
..|+++.-.. ++-.-|..+.+-+.+...+ .+ .++.++++- ...++|.. ++.|.+..+|.+|+++...
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 94 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNV-RG-----YSTRMTVSE--NSGDLYHEVKTMIQSKSVDGFILLYSLK 94 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHH-HT-----CEEEECCCS--SHHHHHHHHHHHHHTTCCSEEEESSCBT
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCcC
Confidence 5799887652 3445567777777654332 22 234444332 23344443 3444457899999987654
Q ss_pred CcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHH
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l 327 (339)
+. .+++.+++.+.|...+.+..+-+...-+.... .++ .+.+- .+..|.++||+.+|.....+..+..--+.
T Consensus 95 ~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 167 (305)
T 3huu_A 95 DD---PIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQY--LYHLGHRHILFLQESGHYAVTEDRSVGFK 167 (305)
T ss_dssp TC---HHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHHHHHH--HHHTTCCSEEEEEESSCBHHHHHHHHHHH
T ss_pred Cc---HHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHHHHHH--HHHCCCCeEEEEcCCcccchhHHHHHHHH
Confidence 32 55666778899999998765322111111111 111 11221 12247899999999766554444433333
No 10
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=81.59 E-value=10 Score=33.58 Aligned_cols=124 Identities=11% Similarity=0.116 Sum_probs=68.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
..|+++. .++-.-|.++.+-+.+...+ .+ .++.++++--... -.+.++.|.+..+|.+|+.+...+.
T Consensus 13 ~~Igvi~--~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~--~~~~~~~l~~~~vdgiIi~~~~~~~--- 79 (289)
T 3k9c_A 13 RLLGVVF--ELQQPFHGDLVEQIYAAATR-RG-----YDVMLSAVAPSRA--EKVAVQALMRERCEAAILLGTRFDT--- 79 (289)
T ss_dssp CEEEEEE--ETTCHHHHHHHHHHHHHHHH-TT-----CEEEEEEEBTTBC--HHHHHHHHTTTTEEEEEEETCCCCH---
T ss_pred CEEEEEE--ecCCchHHHHHHHHHHHHHH-CC-----CEEEEEeCCCCHH--HHHHHHHHHhCCCCEEEEECCCCCH---
Confidence 5799998 55666788888877764332 22 2333333322221 2244555555789999999875543
Q ss_pred HHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCCCc
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGASTP 316 (339)
..++.+.+ +.|...+.+..+-+...-+.... .++. +.+- .+..|.++||+..|...+
T Consensus 80 ~~~~~~~~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~ 138 (289)
T 3k9c_A 80 DELGALAD-RVPALVVARASGLPGVGAVRGDDVAGITLAVDH--LTELGHRNIAHIDGADAP 138 (289)
T ss_dssp HHHHHHHT-TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHH--HHHTTCCSEEEECCTTST
T ss_pred HHHHHHHc-CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHH--HHHCCCCcEEEEeCCCCc
Confidence 34444555 89999998754322110011001 1111 1111 112478999999997755
No 11
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=80.73 E-value=3.9 Score=33.42 Aligned_cols=72 Identities=18% Similarity=0.372 Sum_probs=52.3
Q ss_pred hCCcEEEEEcCCCCcc--hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCC
Q 019556 239 EKVDLILVVGGWNSSN--TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAS 314 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN--T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAS 314 (339)
+++-++|+-.+ -|.| ..+|-.+|++.+.|.+++.+..||.. |+-. ++..++||-...
T Consensus 44 gka~lViiA~D-~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~g~ 104 (120)
T 1xbi_A 44 GIAKLVIIAED-VKPEEVVAHLPYLCEEKGIPYAYVASKQDLGK------------------AAGLEVAASSVAIINEGD 104 (120)
T ss_dssp TCCSEEEEESC-CSSGGGTTTHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECSC
T ss_pred CCceEEEEcCC-CChHHHHHHHHHHHHhcCCCEEEeCCHHHHHH------------------HhCCCCCEEEEEEeccch
Confidence 45666555554 4455 58999999999999888999988853 4411 478899998775
Q ss_pred CcHHHHHHHHHHHHhhh
Q 019556 315 TPDKAVEDVLKKVFEIK 331 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~~ 331 (339)
.-. +.++++++++++
T Consensus 105 a~~--l~~l~~~i~~l~ 119 (120)
T 1xbi_A 105 AEE--LKVLIEKVNVLK 119 (120)
T ss_dssp HHH--HHHHHHHHHHHT
T ss_pred HHH--HHHHHHHHHHhh
Confidence 433 888888888764
No 12
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=80.56 E-value=16 Score=32.37 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=75.0
Q ss_pred ceEEEEEcc---CCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHH-HhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQT---TMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMY-KMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQT---T~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~-~la~~~vD~miVVGG~nS 252 (339)
..|+++.-. .++-.-|.++..-+.+...+ .+ .++.++++ .. .++|..+. .|.+..+|.+|+.+...+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~ 77 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGK-RG-----LDLLLIPD--EP-GEKYQSLIHLVETRRVDALIVAHTQPE 77 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TT-----CEEEEEEE--CT-TCCCHHHHHHHHHTCCSEEEECSCCSS
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CC-hhhHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 578888752 44556677787777664332 22 23444433 11 33444443 343468999999887554
Q ss_pred cchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~ 328 (339)
. ..++.+++.+.|...+.+..+-+...-+.... .++ .+.+- .+..|.++||+.+|.....+..+...-+.+
T Consensus 78 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 150 (294)
T 3qk7_A 78 D---FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKR--LLELGHQRIAFVSTDARISYVDQRLQGYVQ 150 (294)
T ss_dssp C---HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHH--HHHTTCCCEEEEEESSCCHHHHHHHHHHHH
T ss_pred h---HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHH--HHHCCCceEEEEeCCcccchHHHHHHHHHH
Confidence 3 45566778889999998753222211111011 111 11211 112478999999998655554444443333
No 13
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=79.31 E-value=31 Score=29.97 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCc--
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSS-- 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSS-- 253 (339)
+.|+++... ++-.-|..+.+-+.+...+ .+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~ 86 (298)
T 3tb6_A 16 KTIGVLTTY-ISDYIFPSIIRGIESYLSE-QG-----YSMLLTST--NNNPDNERRGLENLLSQHIDGLIVEPTKSALQT 86 (298)
T ss_dssp CEEEEEESC-SSSTTHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC
T ss_pred ceEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 578888765 3445677777777664332 22 23443332 23344553 3445545789999998865442
Q ss_pred chHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCC
Q 019556 254 NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAST 315 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAST 315 (339)
....+++.+++.+.|...+.+..+-....-+.... ..+.. --++| ..|.++||+..|...
T Consensus 87 ~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~ 148 (298)
T 3tb6_A 87 PNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGGMM--AAEHLLSLGHTHMMGIFKADD 148 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHHHH--HHHHHHHTTCCSEEEEEESSS
T ss_pred CcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHHHH--HHHHHHHCCCCcEEEEcCCCC
Confidence 34466677778899999888653221100111011 11111 11222 247889999888665
No 14
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=79.16 E-value=5.8 Score=32.46 Aligned_cols=75 Identities=19% Similarity=0.389 Sum_probs=54.6
Q ss_pred hCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEeecCCC
Q 019556 239 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGITSGAST 315 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGITAGAST 315 (339)
+++-++|+-.+-.... .++|-.+|++.+.|.+++.+..||.. |+-. ++..++||.+...
T Consensus 43 gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~------------------a~G~~~~~~~vaI~d~g~a 104 (124)
T 2fc3_A 43 GLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGE------------------AAGIEVAAASVAIIEPGDA 104 (124)
T ss_dssp TCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEEECGGG
T ss_pred CCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHH------------------HhCCCCCEEEEEEECcchH
Confidence 5666665555544333 58999999999999888999888853 4411 4688999976543
Q ss_pred cHHHHHHHHHHHHhhhh
Q 019556 316 PDKAVEDVLKKVFEIKR 332 (339)
Q Consensus 316 P~~lI~eVi~~l~~~~~ 332 (339)
+.+++++.+.++.+..
T Consensus 105 -~~~~~~l~~~~~~l~~ 120 (124)
T 2fc3_A 105 -ETLVREIVEKVKELRA 120 (124)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhHh
Confidence 7788888888887754
No 15
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=78.64 E-value=31 Score=30.65 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=67.4
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
+|+++...+-+ -|..+.+-+.+...+ .+ .++.+.+. ......+| +.++.|.+..+|.+|+.+.. ++...
T Consensus 3 ~Ig~i~~~~~~--~~~~~~~gi~~~~~~-~g-----~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~~ 72 (313)
T 2h3h_A 3 TIGVIGKSVHP--YWSQVEQGVKAAGKA-LG-----VDTKFFVP-QKEDINAQLQMLESFIAEGVNGIAIAPSD-PTAVI 72 (313)
T ss_dssp EEEEECSCSSH--HHHHHHHHHHHHHHH-HT-----CEEEEECC-SSSCHHHHHHHHHHHHHTTCSEEEECCSS-TTTTH
T ss_pred EEEEEeCCCcH--HHHHHHHHHHHHHHH-cC-----CEEEEECC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 68888765433 677777777654332 22 12332221 01223444 34555555789999987653 33334
Q ss_pred HHHHHHHHhCCCceeeCCCCcc-CCCCcchhhh-ccchhhhhhcccc---CCCcEEEEeecCCCcHHH
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHGELVEKENWLP---KGQITIGITSGASTPDKA 319 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el-~~~~~~~~~~-~~~~~~~~~~wl~---~~~~~VGITAGASTP~~l 319 (339)
..++.+++.+.|...+.+..+- +...-+.... ..+.. --+||- .|.++||+..|...-.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~~~~~~ 138 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYT--AGLIMKELLGGKGKVVIGTGSLTAMNS 138 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHH--HHHHHHHHHTSCSEEEEEESCSSCHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcceeEEECcCHHHHHHH--HHHHHHHHcCCCCEEEEEECCCCCccH
Confidence 5566677788999888764321 1100011001 11111 112221 278899999987433333
No 16
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=77.93 E-value=31 Score=29.60 Aligned_cols=143 Identities=11% Similarity=0.021 Sum_probs=74.8
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhC-CcEEEEEcCCCCcch
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK-VDLILVVGGWNSSNT 255 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~-vD~miVVGG~nSSNT 255 (339)
+|+++.-.. .-.-|..+.+-+.+...+ .+ .++.+.++-.....++| +.++.|.+.. +|.+|+.+. .+..+
T Consensus 2 ~Ig~i~~~~-~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~-~~~~~ 73 (276)
T 3ksm_A 2 KLLLVLKGD-SNAYWRQVYLGAQKAADE-AG-----VTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN-SAEDL 73 (276)
T ss_dssp EEEEECSCS-SSTHHHHHHHHHHHHHHH-HT-----CEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS-STTTT
T ss_pred eEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-CHHHH
Confidence 567766543 334566777766654332 22 23444432222334444 4555665577 999998765 34445
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCC-Ccchhhh-ccch-hhhh-hccccC--CCcEEEEeecCCCcHHHHHHHHHHHHh
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKL-MHGE-LVEK-ENWLPK--GQITIGITSGASTPDKAVEDVLKKVFE 329 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~-~~~~~~~-~~~~-~~~~-~~wl~~--~~~~VGITAGASTP~~lI~eVi~~l~~ 329 (339)
...++.+.+.+.|...+.+..+-... .-+.... ..+. +.+- .+.+ . |.++||+..|...-.+..+..--+.+.
T Consensus 74 ~~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~ 152 (276)
T 3ksm_A 74 TPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALLATL-DLSKERNIALLRLRAGNASTDQREQGFLDV 152 (276)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEECCHHHHHHHHHHHHHHHS-CTTSCEEEEECBCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCcceEEccCHHHHHHHHHHHHHHhc-CcCCCceEEEEEcCCCchhHHHHHHHHHHH
Confidence 66677777889999988765432110 0011111 1111 1111 1112 2 789999999865444444444333333
No 17
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=75.52 E-value=6.5 Score=32.91 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=55.3
Q ss_pred hCCcEEEEEcCCCCc-chHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc--CCCcEEEEee-cCC
Q 019556 239 EKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITS-GAS 314 (339)
Q Consensus 239 ~~vD~miVVGG~nSS-NT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITA-GAS 314 (339)
+++-++|+-++-... -..+|-.+|++.+.|.+++.+-.+|-. |.- .++..++||- |.|
T Consensus 47 gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~G~~~~~s~vaI~d~~~s 108 (134)
T 2ale_A 47 GISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGR------------------ACGVSRPVIAASITTNDAS 108 (134)
T ss_dssp TCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEECCTTC
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHH------------------HhCCCCCeEEEEEEcCChH
Confidence 445555555554443 267899999999999999999888853 331 1345789884 678
Q ss_pred CcHHHHHHHHHHHHhhhhhh
Q 019556 315 TPDKAVEDVLKKVFEIKREE 334 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~~~~~ 334 (339)
.=..+++++.+.++.+.-++
T Consensus 109 ~~~~l~~~i~~~~~~~~~~~ 128 (134)
T 2ale_A 109 AIKTQIYAVKDKIETLLILE 128 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhHHHh
Confidence 88899999988888765443
No 18
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=74.37 E-value=44 Score=29.23 Aligned_cols=137 Identities=9% Similarity=-0.031 Sum_probs=72.3
Q ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHh-hhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKM-VEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~l-a~~~vD~miVVGG~nSSN 254 (339)
..|+++.-..-. ..-|.++.+-+.+... ..+ .++.++++--. .+.+..+.++ .+..+|.+|+.+...+
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~-~~g-----~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~~-- 78 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLS-TTQ-----YHLVVTPHIHA--KDSMVPIRYILETGSADGVIISKIEPN-- 78 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHT-TSS-----CEEEECCBSSG--GGTTHHHHHHHHHTCCSEEEEESCCTT--
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHH-HcC-----CEEEEecCCcc--hhHHHHHHHHHHcCCccEEEEecCCCC--
Confidence 578888764321 1467777777766422 222 23333332222 2344444443 2478999999874432
Q ss_pred hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHH
Q 019556 255 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKK 326 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~ 326 (339)
...++.+++.+.|...+.+..+-....-+.... ..+ .+.+- .+..|.++||+.+|.....+..+...-+
T Consensus 79 -~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~gf 149 (288)
T 3gv0_A 79 -DPRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVER--LAQCGRKRIAVIVPPSRFSFHDHARKGF 149 (288)
T ss_dssp -CHHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHH--HHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred -cHHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHH--HHHCCCCeEEEEcCCcccchHHHHHHHH
Confidence 245666778899999888754322211111111 111 11111 1224789999999876555444443333
No 19
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=74.26 E-value=46 Score=29.42 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=72.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++.-. ++-.-|..+.+-+.+...+ .+ .++.++++ .....+| +.++.|.+..+|.+|+.+...+. .
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-~ 72 (313)
T 3m9w_A 3 VKIGMAIDD-LRLERWQKDRDIFVKKAES-LG-----AKVFVQSA--NGNEETQMSQIENMINRGVDVLVIIPYNGQV-L 72 (313)
T ss_dssp CEEEEEESC-CSSSTTHHHHHHHHHHHHH-TS-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-C
T ss_pred cEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-h
Confidence 368877654 3334456666666553222 22 23444433 2333444 44555556789999998764443 3
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCC-Ccchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVL 324 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~-~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi 324 (339)
..+++.+++.|.|...+.+..+-... .-+.... ..| .+.+-.-. ..|.++|++..|.+.-.+..+...
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~-~~G~~~i~~i~g~~~~~~~~~R~~ 143 (313)
T 3m9w_A 73 SNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVD-IVPQGNYFLMGGSPVDNNAKLFRA 143 (313)
T ss_dssp HHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHH-HCSSEEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHH-hCCCCcEEEEECCCCCccHHHHHH
Confidence 45666777889999988875432221 0111111 112 11221110 137889999998765555444333
No 20
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.80 E-value=42 Score=28.72 Aligned_cols=139 Identities=11% Similarity=0.038 Sum_probs=74.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++..+. +-.-|..+.+-+.+...+ .+ .++.++++ ....++|. .++.|.+..+|.+|+.+.... +
T Consensus 3 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~- 71 (272)
T 3o74_A 3 RTLGFILPDL-ENPSYARIAKQLEQGARA-RG-----YQLLIASS--DDQPDSERQLQQLFRARRCDALFVASCLPP-E- 71 (272)
T ss_dssp CEEEEEESCT-TCHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCCCCS-S-
T ss_pred eEEEEEeCCC-cChhHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCCCEEEEecCccc-c-
Confidence 4788887654 445677787777664332 22 23433332 22334453 344454578999998775422 2
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eVi~~l~ 328 (339)
...++.+++.+.|...+.+..+-+...-+.... ..+.. --++| ..|.++|++.+|...-.+..+...-+.+
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQ--LAASLLSSAPRSIALIGARPELSVSQARAGGFDE 144 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHH--HHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHH--HHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHH
Confidence 445566778899998888753321110011001 11111 11222 2478899999987654444444433333
No 21
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=73.67 E-value=31 Score=30.11 Aligned_cols=131 Identities=18% Similarity=0.158 Sum_probs=71.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. ++-.-|.++.+-+.+...+ .+ .++.++++- ...++|. .++.|.+..+|.+|+.+... .
T Consensus 9 ~~Igvv~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~ 76 (291)
T 3egc_A 9 NVVGLIVSD-IENVFFAEVASGVESEARH-KG-----YSVLLANTA--EDIVREREAVGQFFERRVDGLILAPSEG---E 76 (291)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCCSS---C
T ss_pred cEEEEEECC-CcchHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CCHHHHHHHHHHHHHCCCCEEEEeCCCC---C
Confidence 579988765 4445677777777664332 22 234444332 2234443 34445457899999987654 3
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~ 321 (339)
..+++.+++.+.|...+.+..+-+...-+.... ..+.. --++| ..|.++||+-.|...-.+..+
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~ 142 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGART--AVEYLIARGHTRIGAIVGSAGLMTSRE 142 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHH--HHHHHHHTTCCSEEEECSCTTSHHHHH
T ss_pred hHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCEEEEEeCCCCCcCHHH
Confidence 456666777889999888765422211111111 11111 11222 247889999988764434333
No 22
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=73.50 E-value=47 Score=29.10 Aligned_cols=129 Identities=13% Similarity=0.107 Sum_probs=66.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH----HHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD----AMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~----a~~~la~~~vD~miVVGG~nS 252 (339)
..|+++.-. +.-.-|.++.+-+.+...+ .+ .++.++++- ...++|. .++.|.+..+|.+|+.+...+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 79 (290)
T 2rgy_A 9 GIIGLFVPT-FFGSYYGTILKQTDLELRA-VH-----RHVVVATGC--GESTPREQALEAVRFLIGRDCDGVVVISHDLH 79 (290)
T ss_dssp CEEEEECSC-SCSHHHHHHHHHHHHHHHH-TT-----CEEEEECCC--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC
Confidence 478888754 3445677777777654332 22 223333221 1123333 455665578999999875443
Q ss_pred cchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHH
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKA 319 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~l 319 (339)
...++.+++.+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+-.|...-.+.
T Consensus 80 ---~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~ 143 (290)
T 2rgy_A 80 ---DEDLDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGEL--AAATLIEHGHRKLAVISGPFTASDN 143 (290)
T ss_dssp ---HHHHHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHH--HHHHHHHTTCCSEEEEESCTTCHHH
T ss_pred ---HHHHHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHH--HHHHHHHCCCceEEEEeCCCCCccH
Confidence 334455567889998887642211100010001 11111 11222 2378899999987543333
No 23
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=73.39 E-value=45 Score=28.86 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=66.1
Q ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++...+ ++-.-|.++.+-+.+... ..+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-- 89 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAE-EKG-----RQLLLADG--KHSAEEERQAIQYLLDLRCDAIMIYPRFLS-- 89 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHH-HTT-----CEEEEECC--TTSHHHHHHHHHHHHHTTCSEEEEECSSSC--
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHH-HCC-----CEEEEEeC--CCCHHHHHHHHHHHHhcCCCEEEEecCCCC--
Confidence 5799887653 444566777777665432 222 22333332 2233444 3455565578999999876433
Q ss_pred hHHHHHHHHH-hCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHH
Q 019556 255 TSHLQEIAED-RGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDK 318 (339)
Q Consensus 255 T~rL~eia~~-~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~ 318 (339)
. ..++.+.+ .+.|...+.+..+=....-+.... ..+. .--+|| ..|.++||+..|.....+
T Consensus 90 ~-~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~--~a~~~l~~~G~~~I~~i~~~~~~~~ 153 (296)
T 3brq_A 90 V-DEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSF--NAVAELINAGHQEIAFLTGSMDSPT 153 (296)
T ss_dssp H-HHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHH--HHHHHHHHTTCCSEEEECCCTTCHH
T ss_pred h-HHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHH--HHHHHHHHCCCceEEEEcCCCCCcc
Confidence 2 33445556 788988887643211100010000 1111 111233 237889999988754333
No 24
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=73.15 E-value=48 Score=29.14 Aligned_cols=136 Identities=10% Similarity=0.064 Sum_probs=72.1
Q ss_pred ceEEEEEc----cCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHH-HHhhhhCCcEEEEEcCCC
Q 019556 177 VKVGIANQ----TTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAM-YKMVEEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQ----TT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~-~~la~~~vD~miVVGG~n 251 (339)
..|+++.- ..++-.-|.++..-+.+... ..+ .++.++++- ...++|..+ +.|.+..+|.+|+++...
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~-~~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~ 79 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCN-QHG-----YGTQTTVSN--NMNDLMDEVYKMIKQRMVDAFILLYSKE 79 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHH-TTT-----CEEEECCCC--SHHHHHHHHHHHHHTTCCSEEEESCCCT
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHH-HCC-----CEEEEEcCC--CChHHHHHHHHHHHhCCcCEEEEcCccc
Confidence 57998862 23344557777777765432 222 234444432 233445443 444457899999987543
Q ss_pred CcchHHHHHHHHHhCCCceeeCCCCccC--CCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHH
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDSEKRIG--PGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLK 325 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~~~el~--~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~ 325 (339)
+ ..+++.+++.+.|...+.+..+-. ...-+.... .++ .+.+- .+..|.++||+..|...-.+..+..--
T Consensus 80 ~---~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (295)
T 3hcw_A 80 N---DPIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRH--VIEQGVDELIFITEKGNFEVSKDRIQG 152 (295)
T ss_dssp T---CHHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHH--HHHHCCSEEEEEEESSCCHHHHHHHHH
T ss_pred C---hHHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHH--HHHcCCccEEEEcCCccchhHHHHHHH
Confidence 3 255666778889999888653221 100011001 111 11221 112478999999887654444433333
No 25
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=72.10 E-value=13 Score=33.56 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=58.0
Q ss_pred eEEEEEccC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCCCcc
Q 019556 178 KVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSN 254 (339)
Q Consensus 178 ~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~nSSN 254 (339)
+|+++.-.| -....+.++..-++..+.+.-+ .....-++.+.|+-|+....++ .+++|.. ..||+ |||...|+.
T Consensus 8 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~~--iiG~~~s~~ 84 (368)
T 4eyg_A 8 KVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKR-LAQELIVNDKVNV--IAGFGITPA 84 (368)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHH
T ss_pred EEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHH-HHHHHHhcCCcEE--EECCCccHH
Confidence 788776544 3333445555555443332111 0011225778899887766554 4456653 56776 558888999
Q ss_pred hHHHHHHHHHhCCCceeeCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~ 274 (339)
+..+.+++++.+.|......
T Consensus 85 ~~~~~~~~~~~~ip~i~~~~ 104 (368)
T 4eyg_A 85 ALAAAPLATQAKVPEIVMAA 104 (368)
T ss_dssp HHHHHHHHHHHTCCEEESSC
T ss_pred HHHHHHHHHhCCceEEeccC
Confidence 99999999999988776543
No 26
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=72.09 E-value=53 Score=29.13 Aligned_cols=141 Identities=19% Similarity=0.139 Sum_probs=76.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++.-+. +-.-|.++.+-+.+...+ .+ .++.+++ +....++| +.++.+.+..+|.+|+.+.. +...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~--~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTK-SSARWIDDGNNIVKQLQE-AG-----YKTDLQY--ADDDIPNQLSQIENMVTKGVKVLVIASID-GTTL 73 (330)
T ss_dssp CEEEEEECCS-SSTHHHHHHHHHHHHHHH-TT-----CEEEEEE--CTTCHHHHHHHHHHHHHHTCSEEEECCSS-GGGG
T ss_pred cEEEEEeCCC-cchHHHHHHHHHHHHHHH-cC-----CEEEEee--CCCCHHHHHHHHHHHHHcCCCEEEEEcCC-chhH
Confidence 5788887654 345677777777664332 22 2344444 33334455 34555555789999987654 3344
Q ss_pred HHHHHHHHHhCCCceeeCCCCcc-CCCC-cchhhh-ccc-hhhhh-hcccc----CCCcEEEEeecCCCcHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRI-GPGN-KIAYKL-MHG-ELVEK-ENWLP----KGQITIGITSGASTPDKAVEDVLKK 326 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el-~~~~-~~~~~~-~~~-~~~~~-~~wl~----~~~~~VGITAGASTP~~lI~eVi~~ 326 (339)
...++.+++.|.|...+.+..+= +... -+.... ..| .+.+- .++++ .|.++|++.+|...-....+...-+
T Consensus 74 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf 153 (330)
T 3uug_A 74 SDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGA 153 (330)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHH
Confidence 56677777889999988875422 1100 010001 111 11111 11111 2677999998866554444444333
Q ss_pred H
Q 019556 327 V 327 (339)
Q Consensus 327 l 327 (339)
.
T Consensus 154 ~ 154 (330)
T 3uug_A 154 M 154 (330)
T ss_dssp H
T ss_pred H
Confidence 3
No 27
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=70.71 E-value=51 Score=28.32 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=68.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|.++.+-+.+... ..+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+
T Consensus 4 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 71 (275)
T 3d8u_A 4 YSIALIIPS-LFEKACAHFLPSFQQALN-KAG-----YQLLLGYS--DYSIEQEEKLLSTFLESRPAGVVLFGSEHS--- 71 (275)
T ss_dssp CEEEEEESC-SSCHHHHHHHHHHHHHHH-HTS-----CEECCEEC--TTCHHHHHHHHHHHHTSCCCCEEEESSCCC---
T ss_pred eEEEEEeCC-CccccHHHHHHHHHHHHH-HCC-----CEEEEEcC--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC---
Confidence 478888754 344566777777765432 222 22333322 22334443 345555578999999876433
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKA 319 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~l 319 (339)
..+++.+++.+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+-+|.....+.
T Consensus 72 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~~~~~~ 135 (275)
T 3d8u_A 72 QRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKA--CTRHLIEQGFKNVGFIGARGNHSTL 135 (275)
T ss_dssp HHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHH--HHHHHHTTTCCCEEEEECSCSSHHH
T ss_pred HHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHH--HHHHHHHCCCCeEEEEcCCCCCchH
Confidence 245556667889998887643211100011011 11111 11222 2378899999987544333
No 28
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=70.42 E-value=39 Score=29.57 Aligned_cols=133 Identities=10% Similarity=0.070 Sum_probs=68.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|..+.+-+.+... ..+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 21 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-- 89 (293)
T 2iks_A 21 RSIGLVIPD-LENTSYTRIANYLERQAR-QRG-----YQLLIACS--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-- 89 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHH-HTT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT--
T ss_pred cEEEEEeCC-CcCcHHHHHHHHHHHHHH-HCC-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc--
Confidence 579988764 444567777777765432 222 22333322 1123344 34555555789999998764332
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVED 322 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~e 322 (339)
..+++.+++.+.|...+.+..+-+...-+.... .++.. --+|| ..|.++||+..|.....+..+.
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~R 156 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEM--LAEELRKFPAETVLYLGALPELSVSFLR 156 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESCCCTTTCEEEEECHHHHHHH--HHHHHHTSCCSSEEEEEECTTSHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCccCcCCCCEEEecCHHHHHH--HHHHHHHCCCCEEEEEecCcccccHHHH
Confidence 234455566788988887643211100011011 11111 11233 2378899999987544443333
No 29
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=70.04 E-value=54 Score=28.38 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=70.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|..+.+-+.+...+ .+ .++.++++ ....++|. .++.+.+..+|.+|+.+...
T Consensus 8 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---- 74 (276)
T 3jy6_A 8 KLIAVIVAN-IDDYFSTELFKGISSILES-RG-----YIGVLFDA--NADIEREKTLLRAIGSRGFDGLILQSFSN---- 74 (276)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHT-TT-----CEEEEEEC--TTCHHHHHHHHHHHHTTTCSEEEEESSCC----
T ss_pred cEEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCc----
Confidence 578888765 4556677888777664332 22 23333332 22234443 34455457899999998655
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAST 315 (339)
..+++.+++.+.|...+.+..+-....-+.... ..+ .+.+- .+..|.++||+.+|...
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~--L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKAATTA--FRQQGYQHVVVLTSELE 134 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHHHHHH--HHTTTCCEEEEEEECST
T ss_pred HHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHHHHHH--HHHcCCCeEEEEecCCC
Confidence 566777778899999998754321111111111 111 11111 12247899999998664
No 30
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=68.94 E-value=65 Score=29.27 Aligned_cols=125 Identities=11% Similarity=0.114 Sum_probs=67.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. ++-.-|.++..-+.+...+ .+ .++.++++- ...++| +.++.|.+..+|.+|+.+...+
T Consensus 71 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--- 138 (355)
T 3e3m_A 71 GFVGLLLPS-LNNLHFAQTAQSLTDVLEQ-GG-----LQLLLGYTA--YSPEREEQLVETMLRRRPEAMVLSYDGHT--- 138 (355)
T ss_dssp CEEEEEESC-SBCHHHHHHHHHHHHHHHH-TT-----CEEEEEECT--TCHHHHHHHHHHHHHTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCchHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 478888754 4445677777777654332 22 223333222 223444 3344555578999999876544
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGAST 315 (339)
..+++.+.+.+.|...|.+..+-+...-+.... .++ .+.+- .+..|.++||+..|...
T Consensus 139 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~r~I~~i~~~~~ 198 (355)
T 3e3m_A 139 EQTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNA--LLARGFRKIVFLGEKDD 198 (355)
T ss_dssp HHHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHH--HHHTTCCSEEEEEESSC
T ss_pred HHHHHHHHhCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHH--HHHCCCCeEEEEccCcc
Confidence 356667778899998885433222110111111 111 11221 11247899999998654
No 31
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.68 E-value=21 Score=32.41 Aligned_cols=91 Identities=10% Similarity=0.187 Sum_probs=58.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhh--hCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVE--EKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~--~~vD~miVVGG~nSS 253 (339)
.+|+++.-...+-.-|..+.+-+.+...+ .+ .++.+.++ .....+| +.++.+.+ +.+|.+|+++ .++
T Consensus 4 ~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~~~ 73 (350)
T 3h75_A 4 TSVVFLNPGNSTETFWVSYSQFMQAAARD-LG-----LDLRILYA--ERDPQNTLQQARELFQGRDKPDYLMLVN--EQY 73 (350)
T ss_dssp CEEEEEECSCTTCHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHSSSCCSEEEEEC--CSS
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHH-cC-----CeEEEEEC--CCCHHHHHHHHHHHHhcCCCCCEEEEeC--chh
Confidence 47999887765546678888777764332 22 23444432 2233444 34555654 3899999986 334
Q ss_pred chHHHHHHHHHhCCCceeeCCCCc
Q 019556 254 NTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
....+++.+.+.|.|...+.+..+
T Consensus 74 ~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 74 VAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp HHHHHHHHHTTSCCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCCcEEEEcCCCC
Confidence 556777888889999998887543
No 32
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=67.78 E-value=38 Score=29.66 Aligned_cols=130 Identities=8% Similarity=-0.039 Sum_probs=65.9
Q ss_pred ceEEEEEccCC---ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCC
Q 019556 177 VKVGIANQTTM---LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 177 ~~v~vvsQTT~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nS 252 (339)
..|+++.-..+ .-.-|.++.+-+.+...+ .+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 76 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGA-VN-----YFVLPFPF--SEDRSQIDIYRDLIRSGNVDGFVLSSINYN 76 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHH-TT-----CEEEECCC--CSSTTCCHHHHHHHHTTCCSEEEECSCCTT
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCchHHHHHHHHHHHcCCCCEEEEeecCCC
Confidence 47888865412 334566777666654322 22 22333332 1122233 3345555578999999875433
Q ss_pred cchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHH
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKA 319 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~l 319 (339)
. ..++.+++.+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+-.|.....+.
T Consensus 77 ~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~ 140 (287)
T 3bbl_A 77 D---PRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQ--AVEYLIGRGHRRIAILAWPEDSRVG 140 (287)
T ss_dssp C---HHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHH--HHHHHHHHTCCCEEEEECCTTCHHH
T ss_pred c---HHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHH--HHHHHHHCCCCeEEEEeCCcccccH
Confidence 2 34555667889998887643211100011011 11111 11222 1378899999887544343
No 33
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=67.42 E-value=27 Score=30.69 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=54.6
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
+|+++..+ ++-.-|..+.+-+.+...+ .+ .++.+.++ + ..++| +.++.|.+..+|.+|+.+.. +....
T Consensus 4 ~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~-~~~~~~~~i~~l~~~~vdgiii~~~~-~~~~~ 72 (306)
T 8abp_A 4 KLGFLVKQ-PEEPWFQTEWKFADKAGKD-LG-----FEVIKIAV--P-DGEKTLNAIDSLAASGAKGFVICTPD-PKLGS 72 (306)
T ss_dssp EEEEEESC-TTSHHHHHHHHHHHHHHHH-HT-----EEEEEEEC--C-SHHHHHHHHHHHHHTTCCEEEEECSC-GGGHH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHH-cC-----CEEEEeCC--C-CHHHHHHHHHHHHHcCCCEEEEeCCC-chhhH
Confidence 78888764 4455677777777664332 22 23444444 2 23334 44556655789999988743 34455
Q ss_pred HHHHHHHHhCCCceeeCC
Q 019556 257 HLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~ 274 (339)
.+++.+++.|.|...+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHCCCcEEEeCC
Confidence 667778888999999984
No 34
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=66.70 E-value=5.3 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=49.8
Q ss_pred EEEEEcCCCCcch--HHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC--CCcEEEEe-ecCCCcH
Q 019556 243 LILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK--GQITIGIT-SGASTPD 317 (339)
Q Consensus 243 ~miVVGG~nSSNT--~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~--~~~~VGIT-AGASTP~ 317 (339)
-++|+..--|.|+ ++|-.+|++++.|.+++.+..||.. |+-. .+..++|+ .|.|-=.
T Consensus 59 klViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~------------------a~G~~~~v~~vaI~d~~~s~i~ 120 (135)
T 2aif_A 59 EIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGR------------------ACGVSRPVIAAAITSKDGSSLS 120 (135)
T ss_dssp EEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEEECCTTCTTH
T ss_pred eEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHH------------------HhCCCCcEEEEEEEcCCcHHHH
Confidence 4555666667774 7999999999999999999988853 4411 23458888 6778777
Q ss_pred HHHHHHHHHHHh
Q 019556 318 KAVEDVLKKVFE 329 (339)
Q Consensus 318 ~lI~eVi~~l~~ 329 (339)
.+++++.+.++.
T Consensus 121 ~~~~~~~~~~~~ 132 (135)
T 2aif_A 121 SQITELKDQIEQ 132 (135)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH
Confidence 777777766544
No 35
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=66.16 E-value=65 Score=28.43 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
+.||++ |. ++-.-|.++++-+.+.+.+. +-+.+.-.+.+.|+-.+...+ ++.++.|.+.++|.+|++|. ..+.
T Consensus 3 ~~Igvi-~~-~~~p~~~~i~~gi~~~l~~~-gy~g~~v~l~~~~~~~~~~~~-~~~~~~l~~~~vDgII~~~~---~~~~ 75 (295)
T 3lft_A 3 AKIGVL-QF-VSHPSLDLIYKGIQDGLAEE-GYKDDQVKIDFMNSEGDQSKV-ATMSKQLVANGNDLVVGIAT---PAAQ 75 (295)
T ss_dssp EEEEEE-EC-SCCHHHHHHHHHHHHHHHHT-TCCGGGEEEEEEECTTCHHHH-HHHHHHHTTSSCSEEEEESH---HHHH
T ss_pred eEEEEE-Ec-cCChhHHHHHHHHHHHHHHc-CCCCCceEEEEecCCCCHHHH-HHHHHHHHhcCCCEEEECCc---HHHH
Confidence 479988 64 56667888888777654432 210000012223443333332 23455666678999999873 2233
Q ss_pred HHHHHHHHhCCCceeeCC
Q 019556 257 HLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~ 274 (339)
.+.+ ...+.|..++..
T Consensus 76 ~~~~--~~~~iPvV~~~~ 91 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAI 91 (295)
T ss_dssp HHHH--HCSSSCEEEESC
T ss_pred HHHH--cCCCCCEEEEec
Confidence 3332 246678887764
No 36
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=65.01 E-value=22 Score=31.98 Aligned_cols=93 Identities=19% Similarity=0.152 Sum_probs=55.8
Q ss_pred eEEEEEc-cCCChHHHHHHHHHHHHHHhh---hcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 178 KVGIANQ-TTMLKGETEEIGKLVEKTMMR---KFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 178 ~v~vvsQ-TT~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+|+++.- |.-.......+...++..+.+ .-+.....-++.+.|+-|+....++. +++|....||+ |||...|+
T Consensus 4 ~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~-~~~l~~~~v~~--iig~~~s~ 80 (356)
T 3ipc_A 4 VIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISV-ANKFVADGVKF--VVGHANSG 80 (356)
T ss_dssp EEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHH-HHHHHHTTCCE--EEECSSHH
T ss_pred EEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHH-HHHHHHCCCcE--EEcCCCcH
Confidence 6776654 433333344444444322221 11111122456678888877665544 44554466776 78889999
Q ss_pred chHHHHHHHHHhCCCceeeC
Q 019556 254 NTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie 273 (339)
.+..+.+++++.+.|.....
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~ 100 (356)
T 3ipc_A 81 VSIPASEVYAENGILEITPA 100 (356)
T ss_dssp HHHHHHHHHHTTTCEEEESS
T ss_pred HHHHHHHHHHhCCCeEEecC
Confidence 99999999999988866543
No 37
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=64.35 E-value=74 Score=27.87 Aligned_cols=142 Identities=7% Similarity=-0.119 Sum_probs=77.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+|+++.-.. +-.-|..+.+-+.+...+ .+ .++.+.++-=+...++| +.++.|.+..+|.+|+.+. .+...
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~-~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGS-QDPYWTSLFQGAKKAAEE-LK-----VDLQILAPPGANDVPKQVQFIESALATYPSGIATTIP-SDTAF 75 (297)
T ss_dssp CEEEEECSCC-CSHHHHHHHHHHHHHHHH-HT-----CEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCC-CSSTT
T ss_pred EEEEEEecCC-CCchHHHHHHHHHHHHHH-hC-----cEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 3788887765 455677777777664332 32 23444432200123344 4455555578999887654 44444
Q ss_pred HHHHHHHHHhCCCceeeCCCCcc----CCCCcchhhh-ccchhhhhhccc-cCC--CcEEEEeecCCCcHHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRI----GPGNKIAYKL-MHGELVEKENWL-PKG--QITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el----~~~~~~~~~~-~~~~~~~~~~wl-~~~--~~~VGITAGASTP~~lI~eVi~~l 327 (339)
..+++.+++.|.|...+.+..+- +...-+.... ..|.. --+|| ..+ .++|++..|.+.-.+..+..--+.
T Consensus 76 ~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~ 153 (297)
T 3rot_A 76 SKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKK--LGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIK 153 (297)
T ss_dssp HHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHH--HHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHH--HHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHH
Confidence 66777788889999988876543 1100111011 11111 11222 124 789999998876555554444443
Q ss_pred H
Q 019556 328 F 328 (339)
Q Consensus 328 ~ 328 (339)
+
T Consensus 154 ~ 154 (297)
T 3rot_A 154 T 154 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 38
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=62.17 E-value=23 Score=28.89 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=52.5
Q ss_pred hCCcEEEEEcCCCCcc--hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc--CCCcEEEEeecCC
Q 019556 239 EKVDLILVVGGWNSSN--TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITSGAS 314 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN--T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITAGAS 314 (339)
+++-++|+-.+ -|.| ..+|-.+|++.+.|-+++.+..||.. |+- .++..++|+-...
T Consensus 46 gka~lViiA~D-~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~------------------a~Gk~~~vs~vaI~d~~~ 106 (122)
T 3o85_A 46 GKAELVIIAAD-ADPIEIVLHLPLACEDKGVPYVFIGSKNALGR------------------ACNVSVPTIVASIGKHDA 106 (122)
T ss_dssp TCCSEEEEETT-CSSGGGGTTHHHHHHTTTCCEEEESCHHHHHH------------------HTTCSSCCSEEEECCCTT
T ss_pred CCceEEEEeCC-CChHHHHHHHHHHHHHhCCCEEEECCHHHHHH------------------HhCCCCCEEEEEEEcccc
Confidence 45666555544 4455 47999999999999888999888853 331 1456799998777
Q ss_pred CcHHHHHHHHHHHHhh
Q 019556 315 TPDKAVEDVLKKVFEI 330 (339)
Q Consensus 315 TP~~lI~eVi~~l~~~ 330 (339)
-+..++++.+.++++
T Consensus 107 -~~~~~~~~~~~i~~~ 121 (122)
T 3o85_A 107 -LGNVVAEIVGKVEAL 121 (122)
T ss_dssp -THHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHhh
Confidence 777888888887764
No 39
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=62.16 E-value=39 Score=30.96 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=56.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhh---ccccc-ccccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCC
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRK---FGVEN-VNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~---~~~~~-~~~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~n 251 (339)
-+|+++.-.|-.......+...++..+.+. -+... ...++.+.|+-|+.....+ .+++|.. ..||+ |||...
T Consensus 6 i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~-~~~~li~~~~v~a--iiG~~~ 82 (387)
T 3i45_A 6 IRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVT-AAQELLTRHGVHA--LAGTFL 82 (387)
T ss_dssp EEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHH-HHHHHHHHHCCSE--EEECCS
T ss_pred EEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHH-HHHHHHHhcCCEE--EECCcc
Confidence 378887654433322333333333222211 11100 2245668898887766554 4455543 36776 789999
Q ss_pred CcchHHHHHHHHHhCCCceeeC
Q 019556 252 SSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie 273 (339)
|+.+..+..+|.+.+.|.+...
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~ 104 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASE 104 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS
T ss_pred hHHHHHHHHHHHHcCceEEecC
Confidence 9999999999999998876554
No 40
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=60.87 E-value=45 Score=30.86 Aligned_cols=93 Identities=8% Similarity=-0.025 Sum_probs=67.4
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHH--------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLN-------- 75 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~-------- 75 (339)
||.+.++. +-+|+++- .|+.-.+.|.+.|....++. .++-.+.-|||..=.-++.+.+.+.
T Consensus 18 mA~~L~~~--G~~v~v~d---r~~~~~~~l~~~Ga~~a~s~------~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~ 86 (300)
T 3obb_A 18 MATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARSA------RDAVQGADVVISMLPASQHVEGLYLDDDGLLAH 86 (300)
T ss_dssp HHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSSH------HHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTS
T ss_pred HHHHHHhC--CCeEEEEc---CCHHHHHHHHHcCCEEcCCH------HHHHhcCCceeecCCchHHHHHHHhchhhhhhc
Confidence 67777764 34677764 47899999999999998753 3333333366665556677766653
Q ss_pred -hcCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 76 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 76 -~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
..|-.|||.|=-.....++.++.+.++|-..+
T Consensus 87 ~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l 119 (300)
T 3obb_A 87 IAPGTLVLECSTIAPTSARKIHAAARERGLAML 119 (300)
T ss_dssp CCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 24678999998889999999999999997655
No 41
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=60.36 E-value=29 Score=31.25 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=56.7
Q ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHhhh---cccccccccccccccccHHHHHHHHHHHHhh-hhCCcEEEEEcCCC
Q 019556 177 VKVGIANQTT-MLKGETEEIGKLVEKTMMRK---FGVENVNEHFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la-~~~vD~miVVGG~n 251 (339)
-+|+++.-.| ....-+.++...++..+.+. -+.....-++.+.||-|+....++ .+++|. ...|| .|||...
T Consensus 5 i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~-~~~~l~~~~~v~--~iig~~~ 81 (358)
T 3hut_A 5 LLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQART-IARAFVDDPRVV--GVLGDFS 81 (358)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHH-HHHHHHHCTTEE--EEEECSS
T ss_pred EEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHH-HHHHHhccCCcE--EEEcCCC
Confidence 3788776444 33344555555554322221 010011245667888887765544 455665 34455 4568888
Q ss_pred CcchHHHHHHHHHhCCCceeeCC
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
|+.+..+.+++++.+.|......
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~ 104 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTA 104 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSC
T ss_pred cHHHHHHHHHHHHCCCcEEecCC
Confidence 88899999999999998876643
No 42
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=59.48 E-value=54 Score=28.72 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=68.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
++++++.... +-.-|..+.+-+.+...+ .+ .++.+ .++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 5 ~~I~~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~- 74 (305)
T 3g1w_A 5 ETYMMITFQS-GMDYWKRCLKGFEDAAQA-LN-----VTVEYRGAA--QYDIQEQITVLEQAIAKNPAGIAISAIDPVE- 74 (305)
T ss_dssp CEEEEEESST-TSTHHHHHHHHHHHHHHH-HT-----CEEEEEECS--SSCHHHHHHHHHHHHHHCCSEEEECCSSTTT-
T ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHH-cC-----CEEEEeCCC--cCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH-
Confidence 5888888764 345577777777664332 22 12332 222 2233444 34455555789999998765443
Q ss_pred hHHHHHHHHHhCCCceeeCCCCccCC-CCcchhhh-ccch-hhh-hhccccCCCcEEEEeecCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKL-MHGE-LVE-KENWLPKGQITIGITSGAST 315 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~~el~~-~~~~~~~~-~~~~-~~~-~~~wl~~~~~~VGITAGAST 315 (339)
....++.+.+.+.|...+.+..+-.. ..-+.... ..|. +.+ -.+.+ .|.++||+..|...
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~ 138 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELL-DGEGEVAVITLPNQ 138 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHT-TTCEEEEEEECTTC
T ss_pred HHHHHHHHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 34455666678899988887533211 01111111 1111 111 11222 37889999988654
No 43
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=58.87 E-value=74 Score=28.69 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=45.6
Q ss_pred CceEEecccccCHHHHHHHHHcCCEE--ecCCccccccccccCCC-E-EEECCCCCCHHHHHHHHhcCCcEEeCCC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 86 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~~~~~g~-~-VIIrAHGv~~~~~~~l~~~g~~iiDaTC 86 (339)
.++|+.| |..-+.|++.|+.. +...+....++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 117 ~~i~aVG-----~~Ta~aL~~~G~~~~~~p~~~~e~L~~~l~~g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~ 187 (286)
T 3d8t_A 117 AFRLARG-----AKAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 187 (286)
T ss_dssp SEEEESS-----HHHHHHHHHTTCCCSEECSSSGGGGGGGCCCCCSEEEEECSSSCCHHHHHHHHHTTCEEEEECS
T ss_pred CeEEEEC-----HHHHHHHHHcCCCccccccccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEEE
Confidence 4789988 45668999999864 22111111233343465 4 5778888889999999999999976655
No 44
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=57.94 E-value=99 Score=27.60 Aligned_cols=89 Identities=9% Similarity=0.091 Sum_probs=52.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhC--CcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEK--VDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~--vD~miVVGG~nSS 253 (339)
..|+++... ++-.-|.++.+-+.+...+ .+ .++.++++ ....++| +.++.|.+.. +|.+|+.+... +
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~-~ 75 (332)
T 2rjo_A 6 TTLACSFRS-LTNPYYTAFNKGAQSFAKS-VG-----LPYVPLTT--EGSSEKGIADIRALLQKTGGNLVLNVDPNDS-A 75 (332)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHHH-HT-----CCEEEEEC--TTCHHHHHHHHHHHHHHTTTCEEEEECCSSH-H
T ss_pred cEEEEEecC-CCcHHHHHHHHHHHHHHHH-cC-----CEEEEecC--CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCH-H
Confidence 578988764 4445667777777654332 22 22333332 2223444 3455565567 99999876532 2
Q ss_pred chHHHHHHHHHhCCCceeeCCC
Q 019556 254 NTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~~ 275 (339)
....+++.+.+.+.|...+.+.
T Consensus 76 ~~~~~~~~~~~~~iPvV~~~~~ 97 (332)
T 2rjo_A 76 DARVIVEACSKAGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHHHHTCEEEEESCC
T ss_pred HHHHHHHHHHHCCCeEEEECCC
Confidence 2335566677788998888764
No 45
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=57.53 E-value=84 Score=28.34 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=68.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|.++.+-+.+...+ .+ .++.++++-= .++| +.++.|.+..+|.+|+.+.
T Consensus 65 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~------ 128 (333)
T 3jvd_A 65 ALVGVIVPD-LSNEYYSESLQTIQQDLKA-AG-----YQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV------ 128 (333)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC------
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHH-CC-----CEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch------
Confidence 478888765 4455677777777664332 22 2233333221 3444 3444554578999999876
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~ 328 (339)
++.+.+.+.|...+.+..+-+...-+.... .++ .+.+- .+..|.++||+-+|.....+..+..--+.+
T Consensus 129 ---~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRGELGPGFPRVLCDDEAGFFQLTES--VLGGSGMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp ---TTCCC-CCSCEEEECC----CCSCEEEECHHHHHHHHHHH--HCCSSSCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred ---HHHHhhCCCCEEEECccCCCCCCCEEEEChHHHHHHHHHH--HHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 334456788998887653322111111111 111 11221 123488999999998655444444433333
No 46
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=57.33 E-value=33 Score=31.00 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=78.8
Q ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHhhhccc-ccccccccccccccHHHHHHHHHHHHhhhhC-CcEEEEEcCCCCc
Q 019556 177 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFGV-ENVNEHFISFNTICDATQERQDAMYKMVEEK-VDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~-vD~miVVGG~nSS 253 (339)
.+||++.-.| -....-.++..-++..+.+ .+. ....-++.+.||-|+....++ ++++|..+. ||+ |||...|+
T Consensus 17 ~~iG~~~plsG~~a~~g~~~~~g~~~a~~~-in~i~G~~i~l~~~D~~~~~~~~~~-~~~~l~~~~~v~~--iiG~~~s~ 92 (366)
T 3td9_A 17 VKIAVILPMTGGISAFGRMVWEGIQIAHEE-KPTVLGEEVELVLLDTRSEKTEAAN-AAARAIDKEKVLA--IIGEVASA 92 (366)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHH-CCEETTEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHH
T ss_pred EEEEEEECCcCcchhcCHHHHHHHHHHHHH-hhhcCCeEEEEEEecCCCCHHHHHH-HHHHHhccCCeEE--EEccCCch
Confidence 5888766544 4444445555555432222 110 001245678888887765544 455565332 554 56888899
Q ss_pred chHHHHHHHHHhCCCceeeCC-CCccCCCCcchhhhc---cchhhhhhccc-cC-CCcEEEEeecCCCcH--HHHHHHHH
Q 019556 254 NTSHLQEIAEDRGIPSYWIDS-EKRIGPGNKIAYKLM---HGELVEKENWL-PK-GQITIGITSGASTPD--KAVEDVLK 325 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~-~~el~~~~~~~~~~~---~~~~~~~~~wl-~~-~~~~VGITAGASTP~--~lI~eVi~ 325 (339)
.+..+.+++++.+.|.+.... ..++.......+... .-+...-.+|+ .. +.++|++..+.+.+. ...+...+
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~ 172 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPASTNPLVTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFIN 172 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCGGGTTTCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCCCccccCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHH
Confidence 999999999999988776653 333322111111110 00111222344 22 678999997644432 23344444
Q ss_pred HHHh
Q 019556 326 KVFE 329 (339)
Q Consensus 326 ~l~~ 329 (339)
.+++
T Consensus 173 ~~~~ 176 (366)
T 3td9_A 173 KFTE 176 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 47
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=56.94 E-value=88 Score=27.94 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=63.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|.++.+-+.+...+ .+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+.
T Consensus 61 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 129 (332)
T 2hsg_A 61 TTVGVIIPD-ISNIFYAELARGIEDIATM-YK-----YNIILSNS--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-- 129 (332)
T ss_dssp CEEEEEEC---CCSHHHHHHHHHHHHHHH-HT-----CEEEEEEC--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH--
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCcEEEEecCCCCH--
Confidence 579988754 2334566777766654322 22 22333332 22334443 4555555789999998754332
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGAS 314 (339)
..++.+.+.+.|...+.+..+-+...-+.... .++. +.+- .+..|.++||+-+|..
T Consensus 130 -~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~ 187 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASIESTNQIPSVTIDYEQAAFDAVQS--LIDSGHKNIAFVSGTL 187 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCCCSCTTSCEEEECHHHHHHHHHHH--HHTTTCSCEEEEESCT
T ss_pred -HHHHHHHhCCCCEEEEccccCCCCCCEEEEChHHHHHHHHHH--HHHCCCCEEEEEeCCc
Confidence 34444556788988887643211100011111 1111 1221 1224788999998875
No 48
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=56.75 E-value=78 Score=27.49 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=50.9
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
.|+++... +.-.-|.++.+-+.+...+ .+ .++.+.++ ....++| +.++.|.+.++|.+|+.+. .++...
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVIST-LNNPFFVTLKNGAEEKAKE-LG-----YKIIVEDS--QNDSSKELSNVEDLIQQKVDVLLINPV-DSDAVV 72 (283)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCS-STTTTH
T ss_pred EEEEEecC-CCCHHHHHHHHHHHHHHHh-cC-----cEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-chhhhH
Confidence 67777644 4445677777777654332 22 12333222 1223444 3455665578999998754 333334
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~ 275 (339)
..++.+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~~iPvV~~~~~ 91 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHCCCeEEEecCC
Confidence 4556677888999888764
No 49
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=56.26 E-value=45 Score=30.93 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=41.7
Q ss_pred ccccccccc-cHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 214 EHFISFNTI-CDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 214 ~~~~~~nTI-C~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
-++.+.||- |+.+.-.+ ++++|.. +-.+..|||+..|+.+..+..++++.+.+.+..-
T Consensus 56 i~l~~~D~~~~~~~~a~~-~a~~li~-~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~~ 114 (419)
T 3h5l_A 56 IELVFADTQSKGVDVVIQ-SAQRLID-RDNASALIAGYNLENGTALHDVAADAGVIAMHAN 114 (419)
T ss_dssp EEEEEEECTTCCHHHHHH-HHHHHHH-TTCCSEEECSCCSSCSCHHHHHHHHHTCEEEECC
T ss_pred EEEEEccCCCCCHHHHHH-HHHHHhh-hcCCeEEEccccchhHHHhHHHHHHcCCeEEEcC
Confidence 467788886 77765544 4556653 2344556799999999999999999988766543
No 50
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=56.15 E-value=26 Score=32.49 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=40.3
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCcccccccccc--CCCEEEECCCCCCHH--HHHHHHhcCCcEE
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVN--KGDVVVLPAFGAAVE--EMVTLNNKNVQIV 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~--~g~~VIIrAHGv~~~--~~~~l~~~g~~ii 82 (339)
+-.|+..- .--++...+.|++.|+.+.... +.+.+. .-| +||.+=|+|+. ++++++++|+.|+
T Consensus 28 G~~V~~~D-~~~~~~~~~~L~~~gi~v~~g~----~~~~l~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 94 (326)
T 3eag_A 28 GFEVSGCD-AKMYPPMSTQLEALGIDVYEGF----DAAQLDEFKAD-VYVIGNVAKRGMDVVEAILNLGLPYI 94 (326)
T ss_dssp TCEEEEEE-SSCCTTHHHHHHHTTCEEEESC----CGGGGGSCCCS-EEEECTTCCTTCHHHHHHHHTTCCEE
T ss_pred CCEEEEEc-CCCCcHHHHHHHhCCCEEECCC----CHHHcCCCCCC-EEEECCCcCCCCHHHHHHHHcCCcEE
Confidence 34555443 3223556789999999987532 123343 235 55556689874 6788999999887
No 51
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=55.87 E-value=1e+02 Score=26.64 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=72.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++.-.. +-.-|.++.+-+.+...+ .+ .++.++++ ....++| +.++.+.+..+|.+|+.+.. ++..
T Consensus 6 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~-~~~~ 75 (291)
T 3l49_A 6 KTIGITAIGT-DHDWDLKAYQAQIAEIER-LG-----GTAIALDA--GRNDQTQVSQIQTLIAQKPDAIIEQLGN-LDVL 75 (291)
T ss_dssp CEEEEEESCC-SSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHHCCSEEEEESSC-HHHH
T ss_pred cEEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEEcC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-hhhh
Confidence 5799887654 345566777777654332 22 23444433 2233444 34455556789999987653 3345
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhh-hhccccCCCcEEEEeecCCCcHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVE-KENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~-~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
..+++.+.+.+.|...+.+..+- ...-+.... ..+ .+.+ -.+++ .|.++|++..|...-....
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~~~~-~~~~V~~D~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~~~~~~~ 141 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTATPH-AINNTTSNNYSIGAELALQMVADL-GGKGNVLVFNGFYSVPVCK 141 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCCCTT-CSEEEEECHHHHHHHHHHHHHHHH-TTCEEEEEECSCTTSHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCCC-cCceEecChHHHHHHHHHHHHHHc-CCCceEEEEeCCCCCchHH
Confidence 56777788889999999875431 100011001 111 1111 11222 4789999998865444433
No 52
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=55.26 E-value=23 Score=33.15 Aligned_cols=54 Identities=6% Similarity=0.033 Sum_probs=41.0
Q ss_pred cccccccccc-HHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC-~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-++.+.|+-| +...-.+ ++.+|.. + .++.|||...|+.+.-...++...+.|..
T Consensus 43 l~~~~~D~~~~d~~~a~~-~a~~li~-~-~V~aiiG~~~S~~~~a~~~i~~~~~iP~I 97 (389)
T 3o21_A 43 LNYHVDHLDSSNSFSVTN-AFCSQFS-R-GVYAIFGFYDQMSMNTLTSFCGALHTSFV 97 (389)
T ss_dssp EEEEEEECCTTCHHHHHH-HHHHHHT-T-TCSCEEECCCTTTHHHHHHHHHHHTCCEE
T ss_pred EEEEEEecCCCChHHHHH-HHHHHHh-c-CcEEEEeCCChhHHHHHHHHhccCCCcee
Confidence 3566889989 5554444 4556653 3 67789999999999999999999987754
No 53
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=55.18 E-value=62 Score=28.66 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred eEEEEEccCCC-hHHHHHHHHHHHHHHhhh--cc-cccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 178 KVGIANQTTML-KGETEEIGKLVEKTMMRK--FG-VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 178 ~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~--~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+|+++.-.|-. ...+..+..-++..+.+. .+ .....-++.+.||-|+....+ +.+++|.+.+||++ ||...|+
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~v~~i--ig~~~s~ 80 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAV-AVANKIVNDGIKYV--IGHLCSS 80 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHHTTCCEE--ECCSSHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhCCCCEE--EcCCCcH
Confidence 67777654432 233444554444322221 11 000112456778877765554 44555655678875 5777788
Q ss_pred chHHHHHHHHHhCCCceeeCC
Q 019556 254 NTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~ 274 (339)
++..+.+++++.+.|...+..
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~ 101 (346)
T 1usg_A 81 STQPASDIYEDEGILMISPGA 101 (346)
T ss_dssp HHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHCCCeEEeeCC
Confidence 888899999999888776654
No 54
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=55.08 E-value=1.2e+02 Score=27.42 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=65.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|.++.+-+.+...+ .+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+
T Consensus 67 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 134 (348)
T 3bil_A 67 NTIGVIVPS-LINHYFAAMVTEIQSTASK-AG-----LATIITNS--NEDATTMSGSLEFLTSHGVDGIICVPNEEC--- 134 (348)
T ss_dssp -CEEEEESC-SSSHHHHHHHHHHHHHHHH-TT-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSCEEECCCGGG---
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 478888754 3445677777777654332 22 22333322 22234443 345555578999999875322
Q ss_pred HHHHHHHHHhCCCceeeCCCCcc-CCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCCCcHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el-~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
...++.+.+.+.|...+.+..+- +...-+.... .++. +.+-. +..|.++||+.+|...-.+
T Consensus 135 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~~L--~~~G~~~I~~i~~~~~~~~ 198 (348)
T 3bil_A 135 ANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVELL--AHNNALPIGYLSGPMDTST 198 (348)
T ss_dssp HHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHHHH--HHTTCCSEEEECCCTTSHH
T ss_pred hHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHHHH--HHCCCCeEEEEeCCCCCcc
Confidence 24455566788899888764321 1100011011 1111 12211 1237889999988754333
No 55
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=54.70 E-value=1e+02 Score=26.41 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=67.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|..+.+-+.+...+ .+ .++.++++ ....++|. .++.+.+..+|.+|+.+ .+
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~~dgiIi~~----~~- 74 (277)
T 3e61_A 9 KLIGLLLPD-MSNPFFTLIARGVEDVALA-HG-----YQVLIGNS--DNDIKKAQGYLATFVSHNCTGMISTA----FN- 74 (277)
T ss_dssp -CEEEEESC-TTSHHHHHHHHHHHHHHHH-TT-----CCEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECG----GG-
T ss_pred CEEEEEECC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEec----CC-
Confidence 478888764 4556677888777664332 22 22333322 12234443 34444457899999987 22
Q ss_pred HHHHH-HHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHHHH
Q 019556 256 SHLQE-IAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVEDV 323 (339)
Q Consensus 256 ~rL~e-ia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~eV 323 (339)
...++ .+++.+.|...+.+..+-.. -+.... ..+.. --++| ..|.++||+..|...-.+..+..
T Consensus 75 ~~~~~~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~~~~~~R~ 141 (277)
T 3e61_A 75 ENIIENTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQL--QAEVVRKGKGKNVLIVHENLLIDAFHQRV 141 (277)
T ss_dssp HHHHHHHHHHC-CCEEEGGGCC-----------HHHHHHH--HHHHHHHTTCCSEEEEESCTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCCEEEEeccCCCCC--eEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCCCccHHHHH
Confidence 34466 67788999988877543221 111111 11111 11122 24788999999875444443333
No 56
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=54.69 E-value=1e+02 Score=26.53 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=56.7
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|..+.+-+.+...+ .+ .++.++++ ....++| +.++.|.+..+|.+|+.+.. ++..
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~~~~ 78 (293)
T 3l6u_A 9 NIVGFTIVN-DKHEFAQRLINAFKAEAKA-NK-----YEALVATS--QNSRISEREQILEFVHLKVDAIFITTLD-DVYI 78 (293)
T ss_dssp CEEEEEESC-SCSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--SSCHHHHHHHHHHHHHTTCSEEEEECSC-TTTT
T ss_pred cEEEEEEec-CCcHHHHHHHHHHHHHHHH-cC-----CEEEEECC--CCCHHHHHHHHHHHHHcCCCEEEEecCC-hHHH
Confidence 589988865 4456677777777654332 22 23444433 2233444 44555555789999998653 3444
Q ss_pred HHHHHHHHHhCCCceeeCCCCc
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~e 277 (339)
..+++.+.+.+.|...+.+..+
T Consensus 79 ~~~~~~~~~~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 79 GSAIEEAKKAGIPVFAIDRMIR 100 (293)
T ss_dssp HHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCCEEEecCCCC
Confidence 4666777788999998876543
No 57
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=54.62 E-value=42 Score=29.86 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=49.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
..||++ + .++-.-|.++++-+.+.+.+.-....+.-.+.+.||--+...++ +.++.|.+.++|.+|++|. ..+.
T Consensus 9 ~~IGvi-~-~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~-~~~~~l~~~~vDgII~~~~---~~~~ 82 (302)
T 2qh8_A 9 AKVAVS-Q-IVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAV-QIARQFVGENPDVLVGIAT---PTAQ 82 (302)
T ss_dssp EEEEEE-E-SSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHH-HHHHHHHHTCCSEEEEESH---HHHH
T ss_pred cEEEEE-E-eccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHH-HHHHHHHhCCCCEEEECCh---HHHH
Confidence 589998 4 46666788888888765443311100001222344433333332 3456666678999999873 2233
Q ss_pred HHHHHHHHhCCCceeeC
Q 019556 257 HLQEIAEDRGIPSYWID 273 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie 273 (339)
.+.+ ...+.|..++.
T Consensus 83 ~~~~--~~~~iPvV~~~ 97 (302)
T 2qh8_A 83 ALVS--ATKTIPIVFTA 97 (302)
T ss_dssp HHHH--HCSSSCEEEEE
T ss_pred HHHh--cCCCcCEEEEe
Confidence 3433 25677887775
No 58
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=54.50 E-value=29 Score=31.98 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=58.6
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHH-------HHh
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVT-------LNN 76 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~-------l~~ 76 (339)
||.+.++. +-+|+.+. -|+..++.|.+.|+...++. .++-...-|||..=.-++.+.+. ...
T Consensus 20 mA~~L~~~--G~~V~v~d---r~~~~~~~l~~~G~~~~~s~------~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~ 88 (297)
T 4gbj_A 20 IAEILLEA--GYELVVWN---RTASKAEPLTKLGATVVENA------IDAITPGGIVFSVLADDAAVEELFSMELVEKLG 88 (297)
T ss_dssp HHHHHHHT--TCEEEEC----------CTTTTTTCEECSSG------GGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHC
T ss_pred HHHHHHHC--CCeEEEEe---CCHHHHHHHHHcCCeEeCCH------HHHHhcCCceeeeccchhhHHHHHHHHHHhhcC
Confidence 56777664 34677664 47788899999999998763 33333333555544434443322 235
Q ss_pred cCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 77 KNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 77 ~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
+|-.+||.+=-.....+++++.+.++|...+
T Consensus 89 ~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 89 KDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence 6778999888888999999999999997655
No 59
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=54.39 E-value=58 Score=28.32 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=52.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+|+++.... +-.-|..+.+-+.+...+ .+ .++.++++-=....++| +.++.+.+..+|.+|+.+...+ ..
T Consensus 6 ~~Igvi~~~~-~~~~~~~~~~g~~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 77 (304)
T 3o1i_D 6 EKICAIYPHL-KDSYWLSVNYGMVSEAEK-QG-----VNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH-AY 77 (304)
T ss_dssp CEEEEEESCS-CSHHHHHHHHHHHHHHHH-HT-----CEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT-SS
T ss_pred cEEEEEeCCC-CCcHHHHHHHHHHHHHHH-cC-----CeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh-HH
Confidence 5799887654 445677777777664332 22 23444433221133344 3344454578999998865443 22
Q ss_pred HHHHHHHHHhCCCceeeCCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~ 276 (339)
...++-+. .+.|...+.+..
T Consensus 78 ~~~~~~~~-~~iPvV~~~~~~ 97 (304)
T 3o1i_D 78 EHNLKSWV-GNTPVFATVNQL 97 (304)
T ss_dssp TTTHHHHT-TTSCEEECSSCC
T ss_pred HHHHHHHc-CCCCEEEecCCC
Confidence 33344555 789999886543
No 60
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=53.87 E-value=1.1e+02 Score=26.39 Aligned_cols=90 Identities=10% Similarity=0.201 Sum_probs=52.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++... ++-.-|.++..-+.+...+ .+ .++.+.++ ....++| +.++.|.+.++|.+|+.+. .+...
T Consensus 2 ~~Igvi~~~-~~~~f~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~-~~~~~ 71 (271)
T 2dri_A 2 DTIALVVST-LNNPFFVSLKDGAQKEADK-LG-----YNLVVLDS--QNNPAKELANVQDLTVRGTKILLINPT-DSDAV 71 (271)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CEEEEEEC--TTCHHHHHHHHHHHTTTTEEEEEECCS-STTTT
T ss_pred cEEEEEecC-CCCHHHHHHHHHHHHHHHH-cC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCC-ChHHH
Confidence 367887654 4455677777777654332 22 12333222 1222334 3455565578999998654 33333
Q ss_pred HHHHHHHHHhCCCceeeCCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~ 276 (339)
..+.+.+++.+.|...+.+..
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHCCCcEEEecCCC
Confidence 455666677889999998753
No 61
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=53.65 E-value=89 Score=28.12 Aligned_cols=123 Identities=14% Similarity=0.114 Sum_probs=65.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|.++.+-+.+...+ .+ .++.++++- ...++|. .++.|.+..+|.+|+.+...+
T Consensus 69 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~--~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--- 136 (344)
T 3kjx_A 69 NLVAVIIPS-LSNMVFPEVLTGINQVLED-TE-----LQPVVGVTD--YLPEKEEKVLYEMLSWRPSGVIIAGLEHS--- 136 (344)
T ss_dssp SEEEEEESC-SSSSSHHHHHHHHHHHHTS-SS-----SEEEEEECT--TCHHHHHHHHHHHHTTCCSEEEEECSCCC---
T ss_pred CEEEEEeCC-CCcHHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CCHHHHHHHHHHHHhCCCCEEEEECCCCC---
Confidence 578888754 3344577777777653222 22 223333221 2234443 344454578999999875443
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccc-cCCCcEEEEeecCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWL-PKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl-~~~~~~VGITAGAS 314 (339)
..+++.+++.+.|...+.+...-+...-+.... .++ .+. ++| ..|.++||+..|..
T Consensus 137 ~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~---~~L~~~G~~~I~~i~~~~ 195 (344)
T 3kjx_A 137 EAARAMLDAAGIPVVEIMDSDGKPVDAMVGISHRRAGREMA---QAILKAGYRRIGFMGTKM 195 (344)
T ss_dssp HHHHHHHHHCSSCEEEEEECSSCCSSEEEEECHHHHHHHHH---HHHHHHTCCSCCEEESST
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCCCEEEECcHHHHHHHH---HHHHHCCCCeEEEEecCc
Confidence 356677778899998884322211110111111 111 112 222 23788999998864
No 62
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=53.25 E-value=53 Score=29.67 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=58.7
Q ss_pred eEEEEEc-cCCChHHHHHHHHHHHHHHhhh---cccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 178 KVGIANQ-TTMLKGETEEIGKLVEKTMMRK---FGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 178 ~v~vvsQ-TT~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
+|+++.= |......+.++..-++..+.+. -+.....-++.+.|+-|+..... +.+++|.. +-.+..|||...|+
T Consensus 7 ~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~-~~~~~l~~-~~~v~~iig~~~s~ 84 (364)
T 3lop_A 7 SVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTV-RNVRDMAR-VDNPVALLTVVGTA 84 (364)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHH-HHHHHHHH-HSCEEEEECCCCHH
T ss_pred EEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHH-HHHHHHHh-hcCcEEEEecCCCH
Confidence 7887654 4344444455555444322221 11111224566788888776554 44566653 23456678999999
Q ss_pred chHHHHH--HHHHhCCCceeeCCC
Q 019556 254 NTSHLQE--IAEDRGIPSYWIDSE 275 (339)
Q Consensus 254 NT~rL~e--ia~~~~~~ty~Ie~~ 275 (339)
++..+.+ ++++.+.|.+.....
T Consensus 85 ~~~~~~~~~~~~~~~iP~v~~~~~ 108 (364)
T 3lop_A 85 NVEALMREGVLAEARLPLVGPATG 108 (364)
T ss_dssp HHHHHHHTTHHHHHTCCEESCSCC
T ss_pred HHHhhCchhhHHhcCCcEEEcccC
Confidence 9999999 999999887766543
No 63
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=52.94 E-value=5 Score=34.14 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=52.9
Q ss_pred hCCcEEEEEcCCCCcc--hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc--CCCcEEEEee-cC
Q 019556 239 EKVDLILVVGGWNSSN--TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP--KGQITIGITS-GA 313 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN--T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~--~~~~~VGITA-GA 313 (339)
+++-++|+-++- |.| ..+|-.+|++.+.|.+++.+-.+|-. |.- ..+..++||. |.
T Consensus 65 gkakLVIIA~D~-~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~------------------a~Gk~~~vs~vaI~~~~~ 125 (144)
T 2jnb_A 65 GISEFIVMAADA-EPLEIILHLPLLCEDKNVPYVFVRSKQALGR------------------ACGVSRPVIACSVTIKEG 125 (144)
T ss_dssp TCEEEEEEETTC-SCHHHHTTSCSSCGGGCCCCEEESCSHHHHH------------------HHTCSSCCSEEEEECCTT
T ss_pred CCCeEEEEeCCC-CHHHHHHHHHHHHHHhCCCEEEECCHHHHHH------------------HhCCCCceEEEEEEeCCc
Confidence 445555555544 454 56788899999999999999988853 331 1345699985 78
Q ss_pred CCcHHHHHHHHHHHHhh
Q 019556 314 STPDKAVEDVLKKVFEI 330 (339)
Q Consensus 314 STP~~lI~eVi~~l~~~ 330 (339)
|-=..+++++.+.++.+
T Consensus 126 s~i~~~~~~~~~~i~~l 142 (144)
T 2jnb_A 126 SQLKQQIQSIQQSIERL 142 (144)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888888765
No 64
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=52.68 E-value=1.3e+02 Score=26.97 Aligned_cols=125 Identities=13% Similarity=0.160 Sum_probs=66.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|.++.+-+.+...+ .+ .++.++++ ....++|.. ++.|.+..+|.+|+.+...+.
T Consensus 63 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-- 131 (339)
T 3h5o_A 63 RTVLVLIPS-LANTVFLETLTGIETVLDA-AG-----YQMLIGNS--HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-- 131 (339)
T ss_dssp CEEEEEESC-STTCTTHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--
T ss_pred CEEEEEeCC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--
Confidence 478888754 3334466666666553222 22 22333322 223345533 444445789999999854433
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCc
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP 316 (339)
.+.+.+++.+.|...+.+..+-+.. -+.... .++ .+.+- .+..|.++||+..|...+
T Consensus 132 -~~~~~l~~~~iPvV~~~~~~~~~~~-~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~ 190 (339)
T 3h5o_A 132 -PFERILSQHALPVVYMMDLADDGRC-CVGFSQEDAGAAITRH--LLSRGKRRIGFLGAQLDE 190 (339)
T ss_dssp -THHHHHHHTTCCEEEEESCCSSSCC-EEECCHHHHHHHHHHH--HHHTTCCSEEEEEESCCH
T ss_pred -HHHHHHhcCCCCEEEEeecCCCCCe-EEEECHHHHHHHHHHH--HHHCCCCeEEEEeCCCCc
Confidence 4566677888999888654332221 111111 111 11211 122488999999887643
No 65
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=52.55 E-value=1.2e+02 Score=26.60 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=70.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. ++-.-|.++.+-+.+...+ .+ .++.++++--+ .++|. .++.|.+..+|.+|+.+...+.
T Consensus 16 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 84 (303)
T 3kke_A 16 GTIGLIVPD-VNNAVFADMFSGVQMAASG-HS-----TDVLLGQIDAP--PRGTQQLSRLVSEGRVDGVLLQRREDFD-- 84 (303)
T ss_dssp -CEEEEESC-TTSTTHHHHHHHHHHHHHH-TT-----CCEEEEECCST--THHHHHHHHHHHSCSSSEEEECCCTTCC--
T ss_pred CEEEEEeCC-CcChHHHHHHHHHHHHHHH-CC-----CEEEEEeCCCC--hHHHHHHHHHHHhCCCcEEEEecCCCCc--
Confidence 478888764 3344567777777654332 22 23333333222 23443 3444545789999998875543
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l 327 (339)
...++.+.+ +.|...+.+..+- ...-+.... .++ .+.+- .+..|.++||+.+|...-.+..+...-+.
T Consensus 85 ~~~~~~l~~-~iPvV~i~~~~~~-~~~~V~~D~~~~g~~a~~~--L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 154 (303)
T 3kke_A 85 DDMLAAVLE-GVPAVTINSRVPG-RVGSVILDDQKGGGIATEH--LITLGHSRIAFISGTAIHDTAQRRKEGYL 154 (303)
T ss_dssp HHHHHHHHT-TSCEEEESCCCTT-CCCEEEECHHHHHHHHHHH--HHHTTCCSEEEEESCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCEEEECCcCCC-CCCEEEECcHHHHHHHHHH--HHHCCCCeEEEEeCCCcCccHHHHHHHHH
Confidence 214444555 8999888765431 111111111 111 11221 11247899999998765444444443333
No 66
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=51.83 E-value=4.8 Score=37.29 Aligned_cols=58 Identities=9% Similarity=0.211 Sum_probs=41.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
-++.+.|+-|+....=.+++++|. .+=.+..|||+..|+.+.-+..++++.+.+.+.-
T Consensus 45 ielv~~D~~~~~p~~a~~~a~~Li-~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i~~ 102 (371)
T 4f06_A 45 VEFVYRDEVSPNPAQSKALAQELI-VKEKVQYLAGLYFTPNAMAVAPLLQEAKVPMVVM 102 (371)
T ss_dssp EEEEEEECCSSCHHHHHHHHHHHH-HTSCCSEEEECCSHHHHHHHGGGHHHHTCCEEES
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEEecccccchHHHHHHHHhhcCCcccc
Confidence 356688888743334445567775 2223445789999999999999999998876543
No 67
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=51.75 E-value=44 Score=30.50 Aligned_cols=92 Identities=10% Similarity=0.096 Sum_probs=56.0
Q ss_pred eEEEEEccCCChHH--HHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCCCc
Q 019556 178 KVGIANQTTMLKGE--TEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 253 (339)
Q Consensus 178 ~v~vvsQTT~~~~~--~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~nSS 253 (339)
+|+++.-.|=.... ...+...++-.+.+.-+ .....-++.+.|+-|+....++. +++|.. ..||+ |||...|+
T Consensus 8 ~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~-~~~li~~~~v~~--iiG~~~s~ 84 (379)
T 3n0w_A 8 TLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSI-AREWFDRDGVDA--IFDVVNSG 84 (379)
T ss_dssp EEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHH-HHHHHHHSCCCE--EEECCCHH
T ss_pred EEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHH-HHHHHHhCCceE--EEcCCCcH
Confidence 88887654433322 23344444332222211 00122467788998887666554 455543 45555 58999999
Q ss_pred chHHHHHHHHHhCCCceee
Q 019556 254 NTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~I 272 (339)
.+..+.+++++.+.|.+..
T Consensus 85 ~~~a~~~~~~~~~ip~i~~ 103 (379)
T 3n0w_A 85 TALAINNLVKDKKKLAFIT 103 (379)
T ss_dssp HHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHcCceEEEc
Confidence 9999999999999887655
No 68
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=51.52 E-value=1.3e+02 Score=26.73 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=65.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-+ +-.-|..+.+-+.+...+..+ .++.++++ .....+| +.++.|.+..+|.+|+.+.. +...
T Consensus 7 ~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g-----~~l~i~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~~~ 76 (325)
T 2x7x_A 7 FRIGVAQCS--DDSWRHKMNDEILREAMFYNG-----VSVEIRSA--GDDNSKQAEDVHYFMDEGVDLLIISANE-AAPM 76 (325)
T ss_dssp CEEEEEESC--CSHHHHHHHHHHHHHHTTSSS-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSS-HHHH
T ss_pred eEEEEEecC--CCHHHHHHHHHHHHHHHHcCC-----cEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC-HHHH
Confidence 478888755 445566677766653221102 22333322 2223344 34556655789999988642 2222
Q ss_pred HHHHHHHHHhCCCceeeCCCCccC-CCCcchhhh-ccchhhhhhcccc---CCCcEEEEeecCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHGELVEKENWLP---KGQITIGITSGAST 315 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~-~~~~~~~~~-~~~~~~~~~~wl~---~~~~~VGITAGAST 315 (339)
..+++.+.+.+.|...+.+..+-. ...-+.... ..+.. --+||- .|.++||+..|...
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~~~G~~~I~~i~~~~~ 139 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRS--VGNYIASSLKGKGNIVELTGLSG 139 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSSSCSSEEEEECHHHHHHH--HHHHHHHHTTTEEEEEEEESCTT
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCcceeEEEecCHHHHHHH--HHHHHHHHcCCCceEEEEECCCC
Confidence 355666667889998887643211 100011001 11111 112332 37899999988644
No 69
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=51.29 E-value=1.2e+02 Score=26.26 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=66.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++-.-|..+.+-+.+... ..+ .++.++++ ....++|. .++.|.+..+|.+|+.+...+
T Consensus 9 ~~Igvi~~~-~~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--- 76 (285)
T 3c3k_A 9 GMLLVMVSN-IANPFCAAVVKGIEKTAE-KNG-----YRILLCNT--ESDLARSRSCLTLLSGKMVDGVITMDALSE--- 76 (285)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHH-HTT-----CEEEEEEC--TTCHHHHHHHTHHHHTTCCSEEEECCCGGG---
T ss_pred CEEEEEeCC-CCCchHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---
Confidence 579988764 344567777777765432 222 22333332 22233443 345555578999999864322
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~ 321 (339)
...++.++ .+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+..|.....+..+
T Consensus 77 ~~~~~~l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~~ 141 (285)
T 3c3k_A 77 LPELQNII-GAFPWVQCAEYDPLSTVSSVSIDDVAASEY--VVDQLVKSGKKRIALINHDLAYQYAQH 141 (285)
T ss_dssp HHHHHHHH-TTSSEEEESSCCTTSSSCEEECCHHHHHHH--HHHHHHHTTCCCEEEEECCTTSHHHHH
T ss_pred hHHHHHHh-cCCCEEEEccccCCCCCCEEEEChHHHHHH--HHHHHHHcCCCeEEEEeCCCccccHHH
Confidence 23334445 788988887643211100011111 11111 11222 237899999998754334333
No 70
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=51.25 E-value=1e+02 Score=26.10 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=45.6
Q ss_pred ceEEecccccCHHHHHHHHHcCCEEecCCccccccc------------cccCCCEEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 16 KIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFD------------VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~------------~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
+.|-+----.|+.+.+.|++.|..++.-.-+..++. .+.+|++|++ |..++
T Consensus 97 ~~fr~P~G~~~~~~~~~~~~~G~~~v~w~~d~~Dw~~~~~~~i~~~~~~~~~g~IiL~--Hd~~~--------------- 159 (195)
T 2cc0_A 97 KLFRPPYGETNATLRSVEAKYGLTEVIWDVDSQDWNNASTDAIVQAVSRLGNGQVILM--HDWPA--------------- 159 (195)
T ss_dssp SEECCGGGCCCHHHHHHHHHTTCEECCCSEECCGGGTCCHHHHHHHHHTCCTTCEEEE--ESSCH---------------
T ss_pred CEEECCCCCcCHHHHHHHHHCCCeEEEeccCCCccCCCCHHHHHHHHhCcCcCeEEEE--CCCch---------------
Confidence 355544446799999999999999875210001111 1222332222 33222
Q ss_pred CCCcchHHHHHHHHHHhcCCCeEEEEecC
Q 019556 84 TTCPWVSKVWTSVEKHKKGDYTSIIHGKY 112 (339)
Q Consensus 84 aTCP~V~kv~~~~~~~~~~Gy~iIIiG~~ 112 (339)
.-+..+-.++..+.++||+.+-+.+.
T Consensus 160 ---~t~~al~~ii~~l~~~Gy~~v~l~~~ 185 (195)
T 2cc0_A 160 ---NTLAAIPRIAQTLAGKGLCSGMISPQ 185 (195)
T ss_dssp ---HHHHHHHHHHHHHHHTTEEECEECTT
T ss_pred ---hHHHHHHHHHHHHHHCCCEEEEeCcc
Confidence 13456677888999999998877654
No 71
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=51.00 E-value=12 Score=34.39 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=40.1
Q ss_pred ccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-++.+.|+-|+...-.+ ++++|.. ..|++ |||+..|+.+..+..+|++.+.+.+
T Consensus 47 i~l~~~D~~~~~~~a~~-~~~~li~~~~v~a--iiG~~~s~~~~a~~~~~~~~~ip~i 101 (374)
T 3n0x_A 47 IVVITKDDQSKPDLSKA-ALAEAYQDDGADI--AIGTSSSAAALADLPVAEENKKILI 101 (374)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EEECSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHHhCCceE--EEcCCCcHHHHHHHHHHHHcCccEE
Confidence 46778899888765554 4566652 24554 6699999999999999999887654
No 72
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=50.18 E-value=73 Score=27.97 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=45.0
Q ss_pred CceEEecccccCHHHHHHHHHcCCEE--ecCCccccccccccCCC-E-EEECCCCCCHHHHHHHHhcCCcEEeCCC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQN--IPVEEGKKQFDVVNKGD-V-VVLPAFGAAVEEMVTLNNKNVQIVDTTC 86 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~--v~~~~~~~~~~~~~~g~-~-VIIrAHGv~~~~~~~l~~~g~~iiDaTC 86 (339)
.++|+.|+ ..-+.|++.|+.. +...+....++.+.+|. . ++.|+-+-.+...+.|+++|..|....|
T Consensus 92 ~~i~avG~-----~Ta~~l~~~G~~~~~~p~~~~e~L~~~l~~g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~ 162 (261)
T 1wcw_A 92 AFRLARGA-----KAARALKEAGLPPHAVGDGTSKSLLPLLPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMP 162 (261)
T ss_dssp SEEEESSH-----HHHHHHHHTTCCCSEECSSSHHHHGGGSCCCCEEEEEECCSSCCHHHHHHHHHTTEEEEEECS
T ss_pred CeEEEECH-----HHHHHHHHcCCCCCcccCccHHHHHHHHHcCCceEEEEccCcccHHHHHHHHHCCCEEEEEee
Confidence 47898884 5668999999863 22111111223333355 4 5778888889999999999999866554
No 73
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=49.86 E-value=51 Score=30.23 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=40.4
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcC-----CCCcchHHHHHHHHHhCCCcee
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGG-----WNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG-----~nSSNT~rL~eia~~~~~~ty~ 271 (339)
++...|+-|++.+-.+.++++|. .+ .+..|||+ ..|+.+.....++...+.|..-
T Consensus 40 ~~~~~d~~~d~~~a~~~~~~~Li-~~-~V~aiiG~~~~~~~~s~~~~a~~~~~~~~~iP~is 99 (384)
T 3qek_A 40 QATSVTHRPNAIQMALSVCEDLI-SS-QVYAILVSHPPAPTDHLTPTPISYTAGFYRIPVIG 99 (384)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTG-GG-TEEEEEECC--------CCHHHHHHHHTTTCCEEE
T ss_pred EEEEecccCCHHHHHHHHHHHHH-Hc-CceEEEEecCCCCccchhHHHHHHHHhcCCCCEEe
Confidence 44567899998888888888887 45 78889995 4566677888999988877543
No 74
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=49.80 E-value=1.2e+02 Score=25.96 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=51.5
Q ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
+.|+++....-. -.-|..+.+-+.+...+ .+ .++.+.++--....++| +.++.|.+..+|.+|+.+... +.
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~ 78 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKE-YE-----IKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY-EK 78 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHH-HT-----CEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT-TT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHH-cC-----CEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HH
Confidence 578888754320 45677777777654322 22 12333322101223444 345555557899999877543 33
Q ss_pred hHHHHHHHHHhCCCceeeCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~ 275 (339)
....++.+.+.+.|...+.+.
T Consensus 79 ~~~~~~~~~~~~iPvV~~~~~ 99 (289)
T 3brs_A 79 TYDAAKEIKDAGIKLIVIDSG 99 (289)
T ss_dssp THHHHTTTGGGTCEEEEESSC
T ss_pred hHHHHHHHHHCCCcEEEECCC
Confidence 334455556778898888764
No 75
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=49.67 E-value=9.5 Score=34.59 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=45.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee-CCCCcc
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI-DSEKRI 278 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I-e~~~el 278 (339)
-++.+.||-|+...-.+. +++|. .+-.+++|+|+..|+.+.....++++.+.+.+.- -+...|
T Consensus 49 ielv~~D~~~~p~~a~~~-a~~li-~~~~v~~i~g~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l 112 (353)
T 4gnr_A 49 IEVVDKDNKSETAEAASV-TTNLV-TQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGL 112 (353)
T ss_dssp EEEEEEECTTCHHHHHHH-HHHHH-HTSCCSEEECCCSHHHHHHHHHHHHHTTCCEEESSCCCTTT
T ss_pred EEEEEecCCCCHHHHHHH-HHHHH-hhCCceEEeccccCcccceehhhhhccCcceEeeccccccc
Confidence 467788999998877665 55565 3334567789999999999999999998876533 333444
No 76
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=49.28 E-value=38 Score=30.83 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=55.8
Q ss_pred eEEEEEccCCChHH--HHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 178 KVGIANQTTMLKGE--TEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 178 ~v~vvsQTT~~~~~--~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSN 254 (339)
+||++.-.|=.... ...+..-++..+.+.-+ .....-++.+.|+-|+....++ .+++|.. +-.+..|||...|+.
T Consensus 6 ~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~-~~~~li~-~~~v~~iiG~~~s~~ 83 (375)
T 3i09_A 6 KIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAAS-KAREWMD-RGGLDLLVGGTNSAT 83 (375)
T ss_dssp EEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHH-HHHHHHH-HSCEEEEEECSCHHH
T ss_pred EEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHH-HHHHHHh-hCCCEEEECCCCcHH
Confidence 78877654433221 23343333332222211 0011245678899888766654 4455653 235666789999999
Q ss_pred hHHHHHHHHHhCCCceee
Q 019556 255 TSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~I 272 (339)
+..+.+++++.+.|.+..
T Consensus 84 ~~a~~~~~~~~~ip~i~~ 101 (375)
T 3i09_A 84 ALSMNQVAAEKKKVYINI 101 (375)
T ss_dssp HHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHcCceEEEe
Confidence 999999999998887665
No 77
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=48.21 E-value=54 Score=28.59 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=51.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccc-cccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFIS-FNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
.+|+++...+ ...-|..+.+-+..... ..+ .++.+ .++ ....++| +.++.|.+..+|.+|+.+. .++.
T Consensus 5 ~~Ig~i~~~~-~~~~~~~~~~g~~~~~~-~~g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiii~~~-~~~~ 74 (303)
T 3d02_A 5 KTVVNISKVD-GMPWFNRMGEGVVQAGK-EFN-----LNASQVGPS--STDAPQQVKIIEDLIARKVDAITIVPN-DANV 74 (303)
T ss_dssp EEEEEECSCS-SCHHHHHHHHHHHHHHH-HTT-----EEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCS-CHHH
T ss_pred eEEEEEeccC-CChHHHHHHHHHHHHHH-HcC-----CEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEecC-ChHH
Confidence 4788887543 34556777776665322 222 12322 112 2233444 3455665578999988765 3333
Q ss_pred hHHHHHHHHHhCCCceeeCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~ 275 (339)
...+++.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~ 95 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESP 95 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHCCCeEEEEecC
Confidence 345566677788898888765
No 78
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=48.06 E-value=33 Score=29.85 Aligned_cols=132 Identities=7% Similarity=-0.045 Sum_probs=69.9
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++....++-.-|.++.+-+.+...+ .+ .++.++++-- ..++|. .++.+.+..+|.+|+.+... +.
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~ 81 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAK-QN-----YNYNVVICPY--KTDCLHLEKGISKENSFDAAIIANISN--YD 81 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHH-TT-----TCSEEEEEEE--CTTCGGGCGGGSTTTCCSEEEESSCCH--HH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHH-cC-----CeEEEEecCC--CchhHHHHHHHHhccCCCEEEEecCCc--cc
Confidence 58999987556667788888887764332 22 2233332211 122332 33445457899999986532 22
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDV 323 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eV 323 (339)
..+.+.. +.+.|...+.+..+ ...-+.... ..+ .+.+- .+..|.++||+..|.+......+..
T Consensus 82 ~~~~~~~-~~~iPvV~~~~~~~--~~~~V~~D~~~~~~~a~~~--L~~~G~~~i~~i~~~~~~~~~~~R~ 146 (289)
T 3g85_A 82 LEYLNKA-SLTLPIILFNRLSN--KYSSVNVDNYKMGEKASLL--FAKKRYKSAAAILTESLNDAMDNRN 146 (289)
T ss_dssp HHHHHHC-CCSSCEEEESCCCS--SSEEEEECHHHHHHHHHHH--HHHTTCCBCEEEECCCSSHHHHHHH
T ss_pred HHHHHhc-cCCCCEEEECCCCC--CCCEEEeCHHHHHHHHHHH--HHHcCCCEEEEEeCCcccccHHHHH
Confidence 3444433 56789999987532 211111011 111 11111 1124789999999876544443333
No 79
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=47.82 E-value=1.4e+02 Score=25.81 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=52.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|.++.+-+.+...+ .+ .++.++++- ...++| +.++.|.+..+|.+|+.+... +..
T Consensus 3 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~-~~~ 72 (290)
T 2fn9_A 3 GKMAIVIST-LNNPWFVVLAETAKQRAEQ-LG-----YEATIFDSQ--NDTAKESAHFDAIIAAGYDAIIFNPTDA-DGS 72 (290)
T ss_dssp CEEEEEESC-SSSHHHHHHHHHHHHHHHH-TT-----CEEEEEECT--TCHHHHHHHHHHHHHTTCSEEEECCSCT-TTT
T ss_pred eEEEEEeCC-CCChHHHHHHHHHHHHHHH-cC-----CEEEEeCCC--CCHHHHHHHHHHHHHcCCCEEEEecCCh-HHH
Confidence 378888754 3445677777777654322 22 234443331 223344 345555557899999886533 333
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
..+++.+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecC
Confidence 34556666788998888764
No 80
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=47.81 E-value=48 Score=25.15 Aligned_cols=44 Identities=9% Similarity=-0.083 Sum_probs=29.0
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhh
Q 019556 184 QTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMV 237 (339)
Q Consensus 184 QTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la 237 (339)
.+..+.++|+++++..+. +..=+.++.++|..-+.=...+.+++
T Consensus 14 ~~~~t~~~f~~~l~~~~~----------k~vlv~F~a~wC~~C~~~~p~l~~l~ 57 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGD----------KLVVVDFSATWCGPSKMIKPFFHSLS 57 (116)
T ss_dssp BCCCCHHHHHHHHHHHTT----------SCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhcCC----------CEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 455667777776543221 11224478999999888778888887
No 81
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=47.63 E-value=11 Score=34.88 Aligned_cols=109 Identities=6% Similarity=-0.014 Sum_probs=61.1
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh--ccch
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL--MHGE 292 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~--~~~~ 292 (339)
++.+.|+-|.....-..++.+|... .+..|||+..|+.+.-+..++.+.+.|-+--.... .+. ..+.+.. -++.
T Consensus 35 ~~~~~d~~~~d~~~a~~~~~~li~~--~V~aiiG~~~S~~~~av~~~~~~~~ip~is~~~~~-~~~-~~~~~~~~p~~~~ 110 (376)
T 3hsy_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPT-DGT-HPFVIQMRPDLKG 110 (376)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHHTCEEEECSCCC-CSC-CTTEEECSCCCHH
T ss_pred EEEEeecCCCChHHHHHHHHHHHhc--CcEEEECCCchhHHHHHHHHhccCcCceeecCCCC-ccc-CCceEEeCccHHH
Confidence 4556687784444444556666533 56679999999999999999999987643222211 111 1111111 1121
Q ss_pred h-hhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 019556 293 L-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 329 (339)
Q Consensus 293 ~-~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~ 329 (339)
+ ..-...| +.++|+|..-..-.....+.+.+.+.+
T Consensus 111 a~~~~~~~~--gw~~vaii~d~~~g~~~~~~~~~~~~~ 146 (376)
T 3hsy_A 111 ALLSLIEYY--QWDKFAYLYDSDRGLSTLQAVLDSAAE 146 (376)
T ss_dssp HHHHHHHHT--TCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEEEeCchhHHHHHHHHHHhhh
Confidence 1 1111223 567888887333334466666666654
No 82
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=47.32 E-value=87 Score=27.24 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=57.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhccccccccccccc-ccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISF-NTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++.-. ++-.-|..+.+-+.+... ..+ .++.+. ++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 9 ~~Ig~i~~~-~~~~~~~~~~~gi~~~a~-~~g-----~~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~- 78 (290)
T 3clk_A 9 NVIAAVVSS-VRTNFAQQILDGIQEEAH-KNG-----YNLIIVYSG--SADPEEQKHALLTAIERPVMGILLLSIALTD- 78 (290)
T ss_dssp CEEEEECCC-CSSSHHHHHHHHHHHHHH-TTT-----CEEEEEC------------CHHHHHHSSCCSEEEEESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHH-HcC-----CeEEEEeCC--CCCHHHHHHHHHHHHhcCCCEEEEecccCCH-
Confidence 578888743 344557777777765422 222 122222 22 1222333 34555555789999998764332
Q ss_pred hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 314 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 314 (339)
..++.+++.+.|...+.+..+-+ ..-+.... ..+.. --+|| ..|.++||+..|.+
T Consensus 79 --~~~~~l~~~~iPvV~~~~~~~~~-~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~ 135 (290)
T 3clk_A 79 --DNLQLLQSSDVPYCFLSMGFDDD-RPFISSDDEDIGYQ--ATNLLINEGHRQIGIAGIDQ 135 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--CC-SCEEECCHHHHHHH--HHHHHHTTTCCSEEEESCCC
T ss_pred --HHHHHHHhCCCCEEEEcCCCCCC-CCEEEeChHHHHHH--HHHHHHHcCCCEEEEEeCCC
Confidence 33445566788988887643211 00011011 11111 11222 23788999998863
No 83
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=47.30 E-value=54 Score=26.24 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=42.6
Q ss_pred CCCceEEeccccc-CH-HHHHHHHHcCCEEecCCccccccccccCC-CEEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 13 PEEKIWITNEIIH-NP-TVNKRLEEMAVQNIPVEEGKKQFDVVNKG-DVVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 13 ~~~~Vy~lG~lIH-N~-~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g-~~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
.++.|...|.|-+ ++ +..+.+++.|-++..+. ... +.||.-. ...+.-+++|++.|+.|||
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sV---------SkkTd~LV~G~-~~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGKVTGNV---------SKKTNYLVMGR-DSGQSKSDKAAALGTKIID 97 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSC---------CTTCCEEEECB-CCCHHHHHHHHHHTCEEEC
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcc---------cCCceEEEECC-CCChHHHHHHHHcCCeEEe
Confidence 4567889999954 44 45567779999988753 222 3455543 3346788899999999987
No 84
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=46.58 E-value=1.4e+02 Score=26.18 Aligned_cols=89 Identities=20% Similarity=0.239 Sum_probs=51.1
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+|+++..++ ...-|..+..-+.+... ..+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+ ..
T Consensus 3 ~~Ig~i~~~~-~~~~~~~~~~gi~~~a~-~~g-----~~l~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~ 72 (306)
T 2vk2_A 3 LTVGFSQVGS-ESGWRAAETNVAKSEAE-KRG-----ITLKIADG--QQKQENQIKAVRSFVAQGVDAIFIAPVVAT-GW 72 (306)
T ss_dssp CEEEEEECCC-CSHHHHHHHHHHHHHHH-HHT-----CEEEEEEC--TTCHHHHHHHHHHHHHHTCSEEEECCSSSS-SC
T ss_pred eEEEEEeCCC-CCHHHHHHHHHHHHHHH-HcC-----CEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChh-hH
Confidence 3788888764 33455666666654322 222 23333332 2223444 3445555578999998865433 22
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
..+++.+++.+.|...+.+.
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~ 92 (306)
T 2vk2_A 73 EPVLKEAKDAEIPVFLLDRS 92 (306)
T ss_dssp HHHHHHHHHTTCCEEEESSC
T ss_pred HHHHHHHHHCCCCEEEecCC
Confidence 44555666788999888764
No 85
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=46.35 E-value=67 Score=29.28 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=61.7
Q ss_pred ceEEEEEccCC----ChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCC
Q 019556 177 VKVGIANQTTM----LKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT~----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~n 251 (339)
..|+++.-... .-.-|.++.+-+.+... + .++.++.+--... ++| +.++.|.+..+|.+|+.+...
T Consensus 69 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g-----~~~~~~~~~~~~~-~~~~~~~~~l~~~~vdGiIi~~~~~ 139 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---D-----TQLTLIPASPASS-VDHVSAQQLVNNAAVDGVVIYSVAK 139 (366)
T ss_dssp CEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---S-----CEEEEEECCCCTT-CCHHHHHHHHHTCCCSCEEEESCCT
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHh---h-----CCEEEEEcCCCcc-HHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57998876642 23345667666665322 1 1222222111111 123 234445457899999997632
Q ss_pred CcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEee
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITS 311 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITA 311 (339)
+ ..+++.+.+.+.|...|.+..+-+...-+.... .++ .+.+- .+..|.++||+.+
T Consensus 140 ~---~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~r~I~~i~ 196 (366)
T 3h5t_A 140 G---DPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQA--LIDAGHRKIGILS 196 (366)
T ss_dssp T---CHHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHHHHHH--HHHTTCCSEEEEE
T ss_pred C---hHHHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHH--HHHCCCCcEEEEe
Confidence 2 245556667889999998754322211111111 111 11221 1124789999988
No 86
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=46.34 E-value=19 Score=32.19 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=42.5
Q ss_pred ccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
-++.+.|+-|+....++ .+++|..+ +||++ ||...|+.+..+.+++++.+.|.......
T Consensus 43 i~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~i--ig~~~s~~~~~~~~~~~~~~ip~v~~~~~ 102 (362)
T 3snr_A 43 IKIIVLDDGGDPTAATT-NARRFVTESKADVI--MGSSVTPPSVAISNVANEAQIPHIALAPL 102 (362)
T ss_dssp EEEEEEECTTCHHHHHH-HHHHHHHTSCCSEE--EECSSHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred EEEEEecCCCCHHHHHH-HHHHHHhccCceEE--EcCCCcHHHHHHHHHHHHcCccEEEecCC
Confidence 35667788887766554 45555534 57764 57788888889999999999887766544
No 87
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=46.16 E-value=43 Score=29.44 Aligned_cols=137 Identities=16% Similarity=0.091 Sum_probs=69.9
Q ss_pred ceEEEEEccCCChHHHH-HHHHHHHHHHhhhcccccccccccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETE-EIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++..... -.-|. ++..-+.+...+ .+ .++.++++ ....++|.. ++.|.+..+|.+|+.+...+.
T Consensus 14 ~~Igvi~~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 83 (301)
T 3miz_A 14 NTFGIITDYVS-TTPYSVDIVRGIQDWANA-NG-----KTILIANT--GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI- 83 (301)
T ss_dssp CEEEEEESSTT-TCCSCHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-
T ss_pred CEEEEEeCCCc-CcccHHHHHHHHHHHHHH-CC-----CEEEEEeC--CCChHHHHHHHHHHHhCCCCEEEEecCCccH-
Confidence 57998876532 22244 555555443222 22 23444432 223344533 444545789999999865333
Q ss_pred hHHHHHHHHHhCCCceeeCCCCccC-CCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 019556 255 TSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~~el~-~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~ 328 (339)
.++.+.+.+.|...+.+..+-. ...-+.... .++ .+.+-. +..|.++||+..|.....+..+...-+.+
T Consensus 84 ---~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L--~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 155 (301)
T 3miz_A 84 ---VDPESGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYL--LERGHRRIGYIRLNPILLGAELRLDAFRR 155 (301)
T ss_dssp ---CCCCCTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHH--HTTTCCSEEEEECCTTSHHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHH--HHcCCCeEEEEecCccchhHHHHHHHHHH
Confidence 4455567888988887643322 111111111 111 112211 12478999999987765554444444433
No 88
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=45.87 E-value=21 Score=32.32 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=55.0
Q ss_pred ceEEEEEccCCC-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTML-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nSSN 254 (339)
-+|+++.-.|=. ......+..-++..+.+. + ...-++.+.|+-|+....++ .+++|... .||+ |||...|+.
T Consensus 28 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i-~--G~~i~l~~~d~~~~~~~~~~-~~~~l~~~~~v~~--iig~~~s~~ 101 (386)
T 3sg0_A 28 IKIGITMSASGPGAALGQPQSKTVAALPKEI-G--GEKVTYFALDDESDPTKAAQ-NARKLLSEEKVDV--LIGSSLTPV 101 (386)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHGGGSCSEE-T--TEEEEEEEEECTTCHHHHHH-HHHHHHHTSCCSE--EECCSSHHH
T ss_pred eEEEEEeccCCchhhhcHHHHHHHHHHHHHc-C--CEEEEEEEecCCCCHHHHHH-HHHHHHhhcCceE--EECCCCchh
Confidence 378877644433 333334444333211111 0 01245667888887766544 45556533 4665 458888889
Q ss_pred hHHHHHHHHHhCCCceeeCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~ 274 (339)
+..+.+++++.+.|.+....
T Consensus 102 ~~~~~~~~~~~~ip~v~~~~ 121 (386)
T 3sg0_A 102 SLPLIDIAAEAKTPLMTMAA 121 (386)
T ss_dssp HHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHhcCCeEEEecC
Confidence 99999999999998876654
No 89
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=44.53 E-value=1.4e+02 Score=25.83 Aligned_cols=130 Identities=15% Similarity=0.058 Sum_probs=69.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhccccccccc-ccccccccHHHHHHHHH-HHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEH-FISFNTICDATQERQDA-MYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~nTIC~AT~~RQ~a-~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++.... +-.-|.++.+-+.+...+ .+ .+ +.++++- ...++|.. ++.|.+..+|.+|+.+ +.
T Consensus 11 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiIi~~----~~ 77 (277)
T 3hs3_A 11 KMIGIIIPDL-NNRFYAQIIDGIQEVIQK-EG-----YTALISFSTN--SDVKKYQNAIINFENNNVDGIITSA----FT 77 (277)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHH-TT-----CEEEEEECSS--CCHHHHHHHHHHHHHTTCSEEEEEC----CC
T ss_pred CEEEEEeCCC-CChhHHHHHHHHHHHHHH-CC-----CCEEEEEeCC--CChHHHHHHHHHHHhCCCCEEEEcc----hH
Confidence 5799887653 445677777777654332 22 22 2333222 12334433 4445457899999998 11
Q ss_pred hHHHHHHHHHhCCCceeeCCC-CccCCCCcchhhh-ccc-hhhhhhccccCCCcEEEEeecCCCcHHHHHHHHHHH
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE-KRIGPGNKIAYKL-MHG-ELVEKENWLPKGQITIGITSGASTPDKAVEDVLKKV 327 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~-~el~~~~~~~~~~-~~~-~~~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l 327 (339)
++-+.+.+.|...+.+. -+-+.. -+.... .++ .+.+-.- .|.++||+..|...-.+..+..--+.
T Consensus 78 ----~~~~~~~~iPvV~~~~~~~~~~~~-~V~~D~~~~g~~a~~~L~---~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 78 ----IPPNFHLNTPLVMYDSANINDDIV-RIVSNNTKGGKESIKLLS---KKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp ----CCTTCCCSSCEEEESCCCCCSSSE-EEEECHHHHHHHHHHTSC---TTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ----HHHHHhCCCCEEEEcccccCCCCE-EEEEChHHHHHHHHHHHH---hCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 22245678899888876 221110 011111 222 2233322 58899999998765544444443333
No 90
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=44.49 E-value=67 Score=29.29 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=56.2
Q ss_pred eEEEEE-ccCCChHHHHHHHHHHHHHHhh---hcccccccccccccccccHHHHHHHHHHHHhhhh-CCcEEEEEcCCCC
Q 019556 178 KVGIAN-QTTMLKGETEEIGKLVEKTMMR---KFGVENVNEHFISFNTICDATQERQDAMYKMVEE-KVDLILVVGGWNS 252 (339)
Q Consensus 178 ~v~vvs-QTT~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~-~vD~miVVGG~nS 252 (339)
+||++. .|.........+..-++..+.+ .-+.....-++.+.|+-|+....++ ++++|..+ .||++| | ..|
T Consensus 9 ~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~-~~~~li~~~~V~~ii--g-~~s 84 (392)
T 3lkb_A 9 TLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQR-FFEEAVDRFKIPVFL--S-YAT 84 (392)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHH-HHHHHHHTTCCSCEE--E-CCH
T ss_pred EEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHH-HHHHHHhhcCcEEEE--e-CCc
Confidence 788764 5554444444444444332221 1111112245667888888766544 45566544 687765 6 678
Q ss_pred cchHHHHHHHHHhCCCceeeCCC
Q 019556 253 SNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 253 SNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
+.+..+.+++++.+.|.+.....
T Consensus 85 ~~~~~~~~~~~~~~iP~i~~~~~ 107 (392)
T 3lkb_A 85 GANLQLKPLIQELRIPTIPASMH 107 (392)
T ss_dssp HHHHHHHHHHHHHTCCEEESCCC
T ss_pred HHHHHHHHHHHhCCceEEecccC
Confidence 88889999999999887765443
No 91
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=44.02 E-value=16 Score=32.22 Aligned_cols=94 Identities=23% Similarity=0.255 Sum_probs=51.5
Q ss_pred ceEEEEEccCC--C-hHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTTM--L-KGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT~--~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSS 253 (339)
++|+++..-+- + .+.+..+.+.+++ .+- ++...+ +.. .+..+....|. ++|.+++ || .
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~-----lG~-----~v~~~~-i~~--~~~~~~~~~l~--~ad~I~l-~G---G 88 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALES-----LGL-----LVEELD-IAT--ESLGEITTKLR--KNDFIYV-TG---G 88 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHH-----TTC-----EEEECC-TTT--SCHHHHHHHHH--HSSEEEE-CC---S
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHH-----cCC-----eEEEEE-ecC--CChHHHHHHHH--hCCEEEE-CC---C
Confidence 58999975543 1 1344555555543 332 122221 111 12334445563 5899876 55 5
Q ss_pred chHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCC
Q 019556 254 NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGAS 314 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGAS 314 (339)
||.+|.+.-++.|... .+. ++..+|.-.+|++||+.
T Consensus 89 ~~~~l~~~L~~~gl~~-------------~l~------------~~~~~G~p~~G~sAGa~ 124 (206)
T 3l4e_A 89 NTFFLLQELKRTGADK-------------LIL------------EEIAAGKLYIGESAGAV 124 (206)
T ss_dssp CHHHHHHHHHHHTHHH-------------HHH------------HHHHTTCEEEEETHHHH
T ss_pred CHHHHHHHHHHCChHH-------------HHH------------HHHHcCCeEEEECHHHH
Confidence 7788888888876211 111 33335777889999974
No 92
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=43.65 E-value=33 Score=27.89 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=15.7
Q ss_pred EEECCCCCCHHHHHHHHhcCCcEEeCCCcch
Q 019556 59 VVLPAFGAAVEEMVTLNNKNVQIVDTTCPWV 89 (339)
Q Consensus 59 VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V 89 (339)
|+|.+--..++..+.+++.|++++. -|..|
T Consensus 86 v~~~~G~~~~e~~~~a~~~Girvv~-nC~gv 115 (122)
T 3ff4_A 86 VIFNPGTENEELEEILSENGIEPVI-GCTLV 115 (122)
T ss_dssp EEECTTCCCHHHHHHHHHTTCEEEE-SCHHH
T ss_pred EEECCCCChHHHHHHHHHcCCeEEC-CcCeE
Confidence 3333333345556666666666664 56544
No 93
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=43.64 E-value=94 Score=27.11 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=50.4
Q ss_pred eEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
.|+++... ++-.-|.++.+-+.+...+ .+ .++.+.++-+....++|. .++.+.+.+||.+|+.+.. +....
T Consensus 3 ~Igvi~~~-~~~~f~~~~~~gi~~~a~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~-~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKT-LSNPFWVDMKKGIEDEAKT-LG-----VSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-SVNLV 74 (288)
T ss_dssp EEEEEESC-SSSHHHHHHHHHHHHHHHH-HT-----CCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSS-SSTTH
T ss_pred EEEEEeCC-CCchHHHHHHHHHHHHHHH-cC-----CEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hHHHH
Confidence 57777654 4455677777777653222 22 223333311122334443 3455555789999998653 33333
Q ss_pred HHHHHHHHhCCCceeeCCC
Q 019556 257 HLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~ 275 (339)
.+++.+.+.+.|...+.+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~ 93 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEK 93 (288)
T ss_dssp HHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHCCCeEEEECCC
Confidence 3445566788898888764
No 94
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=42.89 E-value=1.4e+02 Score=25.93 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=51.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHH-HHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQD-AMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~-a~~~la~~~vD~miVVGG~nSSNT 255 (339)
+.|+++... ++-.-|..+.+-+.+...+ .+- .++.++++ ....++|. .++.+.+..+|.+|+.+...+ ..
T Consensus 3 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g~----~~~~~~~~--~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~ 73 (309)
T 2fvy_A 3 TRIGVTIYK-YDDNFMSVVRKAIEQDAKA-APD----VQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPA-AA 73 (309)
T ss_dssp EEEEEEESC-TTSHHHHHHHHHHHHHHHT-CTT----EEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSSGG-GH
T ss_pred cEEEEEecc-CCcHHHHHHHHHHHHHHHh-cCC----eEEEEecC--CCCHHHHHHHHHHHHHcCCCEEEEeCCCcc-hh
Confidence 478888764 3445667777777653222 210 02333332 22234443 345555578999998764322 23
Q ss_pred HHHHHHHHHhCCCceeeCCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~ 275 (339)
...++.+++.+.|...+.+.
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSC
T ss_pred HHHHHHHHHCCCcEEEecCC
Confidence 45566677788999888774
No 95
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=42.10 E-value=1.1e+02 Score=29.86 Aligned_cols=72 Identities=10% Similarity=0.175 Sum_probs=46.8
Q ss_pred CceEEecccccC--HHHHHHHHHcCCEEecCCcccccccccc---CCC-EEEECCCCCCHHHHHHHHhcCCcEEeCCCcc
Q 019556 15 EKIWITNEIIHN--PTVNKRLEEMAVQNIPVEEGKKQFDVVN---KGD-VVVLPAFGAAVEEMVTLNNKNVQIVDTTCPW 88 (339)
Q Consensus 15 ~~Vy~lG~lIHN--~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~---~g~-~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~ 88 (339)
..|-++|++--+ .++...|+++|+.++.-.++. .++++. ... ++++...+ ...-+.|++.|+..+..+.|+
T Consensus 184 ~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~~A~~niv~~~~~--~~~A~~Le~~GiP~i~~~~P~ 260 (437)
T 3aek_A 184 AELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVGPNTRFILAQPFL--GETTGALERRGAKRIAAPFPF 260 (437)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBCTTCEEEESSTTC--HHHHHHHHHTTCEECCCCCSC
T ss_pred CcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhhcCcEEEEECccH--HHHHHHHHHcCCCeEecCCCc
Confidence 479999996444 366778889999876432222 344443 333 45555444 444555588899999998987
Q ss_pred h
Q 019556 89 V 89 (339)
Q Consensus 89 V 89 (339)
-
T Consensus 261 G 261 (437)
T 3aek_A 261 G 261 (437)
T ss_dssp H
T ss_pred C
Confidence 3
No 96
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=42.02 E-value=1.7e+02 Score=25.36 Aligned_cols=124 Identities=19% Similarity=0.186 Sum_probs=65.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +.-.-|..+.+-+.+... ..+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+
T Consensus 17 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 84 (289)
T 2fep_A 17 TTVGVIIPD-ISSIFYSELARGIEDIAT-MYK-----YNIILSNS--DQNMEKELHLLNTMLGKQVDGIVFMGGNIT--- 84 (289)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHH-HTT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCC---
T ss_pred CeEEEEeCC-CCCchHHHHHHHHHHHHH-HcC-----CEEEEEeC--CCCHHHHHHHHHHHHhCCCCEEEEecCCCC---
Confidence 579988754 444567777777765432 222 22333322 2222334 3445555578999999876433
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCC
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 314 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 314 (339)
...++.+.+.+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+..|..
T Consensus 85 ~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~I~~i~~~~ 143 (289)
T 2fep_A 85 DEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYD--AVKLLVDKGHTDIAFVSGPM 143 (289)
T ss_dssp HHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHH--HHHHHHHTTCSSEEEEESCT
T ss_pred HHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHH--HHHHHHHCCCCeEEEEeCCc
Confidence 233444557889998887643211100011011 11111 11222 23788999998865
No 97
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=41.86 E-value=60 Score=25.81 Aligned_cols=73 Identities=15% Similarity=0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc-EEeCCCcchHHHHHHHHHHhcCCCe
Q 019556 27 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYT 105 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~~~~~~~~Gy~ 105 (339)
...++.|+++|+.+. |++ -+-.......++..|+. +.|...|...-++..++++.-+...
T Consensus 42 ~~~l~~l~~~g~~~~------------------i~T-~~~~~~~~~~l~~~gl~~~~~~~kp~~~~~~~~~~~~~~~~~~ 102 (162)
T 2p9j_A 42 GIGIKLLQKMGITLA------------------VIS-GRDSAPLITRLKELGVEEIYTGSYKKLEIYEKIKEKYSLKDEE 102 (162)
T ss_dssp HHHHHHHHTTTCEEE------------------EEE-SCCCHHHHHHHHHTTCCEEEECC--CHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCEEE------------------EEe-CCCcHHHHHHHHHcCCHhhccCCCCCHHHHHHHHHHcCCCHHH
Confidence 367888888877643 111 12245667777777875 5788889888888888887666678
Q ss_pred EEEEecCCCceeee
Q 019556 106 SIIHGKYSHEETVA 119 (339)
Q Consensus 106 iIIiG~~~HpEv~g 119 (339)
++.+||.. .-+.+
T Consensus 103 ~~~vGD~~-~Di~~ 115 (162)
T 2p9j_A 103 IGFIGDDV-VDIEV 115 (162)
T ss_dssp EEEEECSG-GGHHH
T ss_pred EEEECCCH-HHHHH
Confidence 99999876 34433
No 98
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=41.68 E-value=71 Score=24.73 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=44.1
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccC-CCcEEEEeecCCCcH
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPK-GQITIGITSGASTPD 317 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~-~~~~VGITAGASTP~ 317 (339)
+++-++|+-.+-...-.++|-..|+..+.|.+++.+..||.. |+-. ....++|| ..
T Consensus 33 gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~------------------a~Gk~~~~~vai~-----d~ 89 (101)
T 3on1_A 33 GQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGR------------------AIGKHERVVIGVK-----DA 89 (101)
T ss_dssp TCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHH------------------HTTSSCCSEEEEC-----CH
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHH------------------HhCCcCeEEEEEE-----Cc
Confidence 567776666555443444677889999999999999988863 4411 24457774 55
Q ss_pred HHHHHHHHHHH
Q 019556 318 KAVEDVLKKVF 328 (339)
Q Consensus 318 ~lI~eVi~~l~ 328 (339)
...+.+++.|.
T Consensus 90 g~a~~i~~~~~ 100 (101)
T 3on1_A 90 GFSRKLAALID 100 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHhc
Confidence 56666666554
No 99
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=41.52 E-value=1.9e+02 Score=25.72 Aligned_cols=128 Identities=14% Similarity=0.169 Sum_probs=66.3
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. +.-.-|.++.+-+.+...+ .+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+ .
T Consensus 64 ~~Ig~i~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~ 132 (332)
T 2o20_A 64 TTVGVILPT-ITSTYFAAITRGVDDIASM-YK-----YNMILANS--DNDVEKEEKVLETFLSKQVDGIVYMGSSLD--E 132 (332)
T ss_dssp CEEEEEESC-TTCHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECSSCCC--H
T ss_pred CEEEEEeCC-CCCcHHHHHHHHHHHHHHH-cC-----CEEEEEEC--CCChHHHHHHHHHHHhCCCCEEEEeCCCCC--H
Confidence 578888754 3445677777777654322 22 22333221 2223444 3455555578999999886433 2
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCCCcHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGASTPDK 318 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGASTP~~ 318 (339)
..++.+.+.+.|...+.+..+-+...-+.... .++. +.+- .+..|.++||+..|...-.+
T Consensus 133 -~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~--L~~~G~~~I~~i~~~~~~~~ 194 (332)
T 2o20_A 133 -KIRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTKK--LIDSGNKKIAYIMGSLKDVE 194 (332)
T ss_dssp -HHHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHHHHHHH--HHHTTCSSEEEECSCTTSHH
T ss_pred -HHHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHHHHHHH--HHHCCCCeEEEEeCCccccc
Confidence 33444457788998887643211100011111 1111 1211 11247889999988754333
No 100
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=41.52 E-value=1.7e+02 Score=25.15 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=55.0
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhccccccccccccccccc-HHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTIC-DATQERQ-DAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC-~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSN 254 (339)
..|+++.-....-.-|..+.+-+.+...+..+ ..+.+..+-. ....++| +.++.|.+..+|.+|+.+...+ .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g-----~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~ 82 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSD-----FNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQ-Y 82 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGG-----GCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGG-G
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHh-----CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChH-H
Confidence 57888876653445677787777664333201 1233322211 1233444 3345554578999999875433 3
Q ss_pred hHHHHHHHHHhCCCceeeCCC
Q 019556 255 TSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 255 T~rL~eia~~~~~~ty~Ie~~ 275 (339)
...+++.+.+.+.|...+.+.
T Consensus 83 ~~~~~~~~~~~~iPvV~~~~~ 103 (304)
T 3gbv_A 83 TKGFTDALNELGIPYIYIDSQ 103 (304)
T ss_dssp THHHHHHHHHHTCCEEEESSC
T ss_pred HHHHHHHHHHCCCeEEEEeCC
Confidence 455666777888999998864
No 101
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.34 E-value=22 Score=28.78 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHhhhhCCcEEEEEcCCCCcchH---HHHHHHHHhCCCceee--CCCCccCC
Q 019556 234 YKMVEEKVDLILVVGGWNSSNTS---HLQEIAEDRGIPSYWI--DSEKRIGP 280 (339)
Q Consensus 234 ~~la~~~vD~miVVGG~nSSNT~---rL~eia~~~~~~ty~I--e~~~el~~ 280 (339)
.+| +.+|++||+-|.+|+|+. .-.+.|++.|+|..-| -+.+++|.
T Consensus 34 ~~I--~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~ 83 (111)
T 1eiw_A 34 ATP--EDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPP 83 (111)
T ss_dssp CCS--SSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCT
T ss_pred Ccc--ccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCH
Confidence 567 479999999999998876 6667788899886544 44556654
No 102
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=41.22 E-value=1.3e+02 Score=26.78 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=69.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
++|+++..+. ...-|..+.+-+++...+ .+ .++.+.+ .+.....+| +.++.|.++.+|.+|+.+. .++..
T Consensus 4 ~~Igvi~~~~-~~~~~~~~~~g~~~~~~~-~g-----~~~~~~~-~~~~d~~~q~~~i~~li~~~vdgiii~~~-~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLV-GVGFFTSGGNGAQEAGKA-LG-----IDVTYDG-PTEPSVSGQVQLVNNFVNQGYDAIIVSAV-SPDGL 74 (316)
T ss_dssp CEEEEECSSS-SSHHHHHHHHHHHHHHHH-HT-----CEEEECC-CSSCCHHHHHHHHHHHHHTTCSEEEECCS-SSSTT
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHH-hC-----CEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CHHHH
Confidence 4788887553 445677777777654332 22 2233321 012233444 3355555578999887653 33333
Q ss_pred HHHHHHHHHhCCCceeeCCCCccC-CCCcc-hhhh-ccchh-hhh-hccccCCCcEEEEeecCCCcHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIG-PGNKI-AYKL-MHGEL-VEK-ENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~-~~~~~-~~~~-~~~~~-~~~-~~wl~~~~~~VGITAGASTP~~lI 320 (339)
...++.+++.|.|...+.+.-+-. ...-+ .... ..|.. .+- .+.+..|..+|++-.|..+-.+..
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~ 144 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQN 144 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHH
Confidence 556677778899988887642211 10001 1111 11211 111 111212678999999876544433
No 103
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.15 E-value=60 Score=25.04 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=33.2
Q ss_pred hhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceee-CCCCccCC
Q 019556 238 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGP 280 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~I-e~~~el~~ 280 (339)
.+++-++|+-.+ -|.|+. +|-..|++.+.|.|.. .+..||-.
T Consensus 29 ~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 29 TGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELGT 72 (99)
T ss_dssp HTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGGG
T ss_pred cCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 356778777777 778877 6667899999998776 99999864
No 104
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=40.73 E-value=1.5e+02 Score=26.44 Aligned_cols=140 Identities=11% Similarity=0.052 Sum_probs=64.9
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+|+++.-..+.- .-|..+.+-+.+. .+.++ .++.+.++.-. ..+.++.++.|++..+|.+|++|... +
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~-~~~~g-----~~~~~~~~~~~-~~~~~~~l~~l~~~~vdgIi~~~~~~---~ 75 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNI-HSNLD-----VDVVLEEGVNS-EQKAHRRIKELVDGGVNLIFGHGHAF---A 75 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHH-HHHSC-----CEEEEECCCCS-HHHHHHHHHHHHHTTCCEEEECSTHH---H
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHH-HHHhC-----CeEEEEeCCCC-HHHHHHHHHHHHHCCCCEEEEcCHhH---H
Confidence 4788876422221 3344555544432 22222 12332322211 22334567778767899999886422 2
Q ss_pred HHHHHHHHHh-CCCceeeCCCCccCCCCcchhhhccc-hh-hhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHH
Q 019556 256 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHG-EL-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVF 328 (339)
Q Consensus 256 ~rL~eia~~~-~~~ty~Ie~~~el~~~~~~~~~~~~~-~~-~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~ 328 (339)
..+.+++++. +.|..+|.+..+-+...-+......+ .. ..-...| .+.++||..+|-..|. -++--...|+
T Consensus 76 ~~~~~~~~~~p~~p~v~id~~~~~~~~~~v~~d~~~g~~lag~la~~l-~~~~~Ig~i~g~~~~~-r~~Gf~~~~~ 149 (296)
T 2hqb_A 76 EYFSTIHNQYPDVHFVSFNGEVKGENITSLHFEGYAMGYFGGMVAASM-SETHKVGVIAAFPWQP-EVEGFVDGAK 149 (296)
T ss_dssp HHHHTTTTSCTTSEEEEESCCCCSSSEEEEEECCHHHHHHHHHHHHHT-CSSSEEEEEESCTTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecCcCCCCEEEEEechHHHHHHHHHHHHhh-ccCCeEEEEcCcCchh-hHHHHHHHHH
Confidence 3355565443 45667776542211100011111111 11 1111234 3578999999987775 3333333333
No 105
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=40.60 E-value=15 Score=30.57 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.4
Q ss_pred HHhhhhCCcEEEEE---cCCCCcchHHHHHHHHHhCCCceeeC
Q 019556 234 YKMVEEKVDLILVV---GGWNSSNTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 234 ~~la~~~vD~miVV---GG~nSSNT~rL~eia~~~~~~ty~Ie 273 (339)
..|. ..||.|+|. |...|.=-+.=+++|++.|.+.++..
T Consensus 77 ~~lL-~~CdevwV~~L~Gw~~S~Gm~~Ei~~A~~~g~pV~~~~ 118 (125)
T 1t1j_A 77 AFYM-DHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWS 118 (125)
T ss_dssp HHHH-HHCSEEEECCCTTGGGCHHHHHHHHHHHHTTCEEEEHH
T ss_pred HHHH-HhCCeeEEEecCCCCCChhHHHHHHHHHHCCCcEEEEc
Confidence 4565 579999988 88889999999999999999986543
No 106
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=39.67 E-value=55 Score=32.60 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccC-CCEEEECCCCCCHH--HHHHHHhcCCcEE
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVE--EMVTLNNKNVQIV 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~-g~~VIIrAHGv~~~--~~~~l~~~g~~ii 82 (339)
|-.|...- .--.+...+.|++.|+.+.... +.+.+.. -| +||.+=|+|+. ++++++++|+.|+
T Consensus 43 G~~V~~sD-~~~~~~~~~~L~~~gi~~~~G~----~~~~~~~~~d-~vV~Spgi~~~~p~l~~a~~~gi~v~ 108 (524)
T 3hn7_A 43 GHTVTGSD-ANIYPPMSTQLEQAGVTIEEGY----LIAHLQPAPD-LVVVGNAMKRGMDVIEYMLDTGLRYT 108 (524)
T ss_dssp TCEEEEEE-SCCCTTHHHHHHHTTCEEEESC----CGGGGCSCCS-EEEECTTCCTTSHHHHHHHHHTCCEE
T ss_pred CCEEEEEC-CCCCcHHHHHHHHCCCEEECCC----CHHHcCCCCC-EEEECCCcCCCCHHHHHHHHCCCcEE
Confidence 33454432 2223556789999999987532 1233333 35 55555689864 6788889999887
No 107
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=39.34 E-value=65 Score=28.96 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=57.7
Q ss_pred ceEEEEEccC-CChHHHHHHHHHHHHHHhhhcc-cccccccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCCCc
Q 019556 177 VKVGIANQTT-MLKGETEEIGKLVEKTMMRKFG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWNSS 253 (339)
Q Consensus 177 ~~v~vvsQTT-~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~nSS 253 (339)
-+|+++.-.| .....+.++..-++..+.+.-+ .....-++.+.|+-|+..... +.+++|.. ..||+ |||...|+
T Consensus 17 i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~--iig~~~s~ 93 (375)
T 4evq_A 17 LKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKAT-ELTTKLIQSEKADV--LIGTVHSG 93 (375)
T ss_dssp EEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHH-HHHHCCCCCSCCSE--EEECSSHH
T ss_pred eEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHH-HHHHHHHhcCCceE--EEcCCccH
Confidence 4788876443 3344455565555543332210 000114566778888765544 45566653 25665 57888889
Q ss_pred chHHHHHHHHHhCCCceeeC
Q 019556 254 NTSHLQEIAEDRGIPSYWID 273 (339)
Q Consensus 254 NT~rL~eia~~~~~~ty~Ie 273 (339)
.+..+.+++++.+.|.....
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~ 113 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPN 113 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESS
T ss_pred HHHHHHHHHHHcCceEEecC
Confidence 99999999999998877554
No 108
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=39.34 E-value=13 Score=34.97 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=41.9
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.|+-|+...-.+.+. +|....-.+..|||+..|+.+.....++...+.+.+-
T Consensus 58 l~l~~~D~~~~~~~a~~~a~-~li~~~~~v~aviG~~~S~~~~a~~~~~~~~~ip~is 114 (433)
T 4f11_A 58 LDLRLYDTECDNAKGLKAFY-DAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLS 114 (433)
T ss_dssp EEEEEEECTTCHHHHHHHHH-HHHHHSCCCSEEEECCSHHHHHHHHHTHHHHTCEEEE
T ss_pred EEEEEecCCCCHHHHHHHHH-HHHhcCCceEEEECCCcchHHHHHHHHHHhcCceEEE
Confidence 46778899998876655544 4442322455788999999999999999999877543
No 109
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=39.00 E-value=1.6e+02 Score=27.85 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=33.1
Q ss_pred cccccCCCEEEECCC-CCCHHHHHHHHhcCCcEEeC--------CCcchHH
Q 019556 50 FDVVNKGDVVVLPAF-GAAVEEMVTLNNKNVQIVDT--------TCPWVSK 91 (339)
Q Consensus 50 ~~~~~~g~~VIIrAH-Gv~~~~~~~l~~~g~~iiDa--------TCP~V~k 91 (339)
+..+.+|+.++...| ++.++..+.+.++|+++|+. ..|.+..
T Consensus 82 ~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~ 132 (377)
T 2vhw_A 82 YGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP 132 (377)
T ss_dssp GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH
T ss_pred HhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc
Confidence 445557888888888 58899999999999999955 5676653
No 110
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=38.92 E-value=63 Score=25.55 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=33.2
Q ss_pred hhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceee-CCCCccCC
Q 019556 238 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGP 280 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~I-e~~~el~~ 280 (339)
.+++-++|+-.+- |.|+. +|-.+|++.+.|.|.+ .+..||-.
T Consensus 35 ~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~ 78 (110)
T 3cpq_A 35 HGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELGA 78 (110)
T ss_dssp TTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHHH
T ss_pred cCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHHH
Confidence 3567777777777 88877 5778899999998887 88888853
No 111
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=38.32 E-value=1.2e+02 Score=29.92 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=38.6
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCH--HHHHHHHhcCCcEE
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAV--EEMVTLNNKNVQIV 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~--~~~~~l~~~g~~ii 82 (339)
+-.|+.. +.--++ ..+.|++.|+.+...- +.+.+..-| +||.+=|+|+ .+++.++++|+.|+
T Consensus 46 G~~V~~~-D~~~~~-~~~~l~~~gi~~~~g~----~~~~~~~~d-~vV~Spgi~~~~p~~~~a~~~gi~v~ 109 (494)
T 4hv4_A 46 GYQISGS-DLAPNS-VTQHLTALGAQIYFHH----RPENVLDAS-VVVVSTAISADNPEIVAAREARIPVI 109 (494)
T ss_dssp TCEEEEE-CSSCCH-HHHHHHHTTCEEESSC----CGGGGTTCS-EEEECTTSCTTCHHHHHHHHTTCCEE
T ss_pred CCeEEEE-ECCCCH-HHHHHHHCCCEEECCC----CHHHcCCCC-EEEECCCCCCCCHHHHHHHHCCCCEE
Confidence 3345543 333344 5678999999887531 122343345 4455568987 37778889999886
No 112
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=38.26 E-value=1e+02 Score=26.75 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=56.6
Q ss_pred hCCcEEEEEc-CCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEEeecC--CC
Q 019556 239 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGA--ST 315 (339)
Q Consensus 239 ~~vD~miVVG-G~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGA--ST 315 (339)
...|..+++. |.-|.=|.-=++.|+++++|.++|+= +++.+. .......+||....-.|-=.||- |.
T Consensus 72 ~DSDgTLI~~~g~lsGGT~lT~~~a~~~~KP~l~i~l-~~~~~~---------~~~~~v~~wl~~~~i~vLNVAGPReS~ 141 (158)
T 3imk_A 72 LDSDGTLIISHGILKGGSALTEFFAEQYKKPCLHIDL-DRISIE---------DAATLINSWTVSHHIQVLNIAGPRAGK 141 (158)
T ss_dssp HTSSEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEET-TTSCHH---------HHHHHHHHHHHHTTCCEEEEECCCTTT
T ss_pred hhcCeEEEEecCCCCCchHHHHHHHHHhCCCEEEEec-cccccc---------chHHHHHHHHHHCCceEEEeccCcccC
Confidence 3589999999 99999999999999999999888863 322220 11234458995555566667884 55
Q ss_pred cHHHHHHHHHHHHhh
Q 019556 316 PDKAVEDVLKKVFEI 330 (339)
Q Consensus 316 P~~lI~eVi~~l~~~ 330 (339)
-..+=..+...|..+
T Consensus 142 ~PgI~~~~~~~L~~~ 156 (158)
T 3imk_A 142 DPEIYQATMDLLEVF 156 (158)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 556666666666554
No 113
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=37.38 E-value=16 Score=36.12 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcch-HHHHHHHHHhC--CCceee
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRG--IPSYWI 272 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSNT-~rL~eia~~~~--~~ty~I 272 (339)
..|+++++.|..-.+|+++||||-.|-.| .+|.+.+++.| .+...|
T Consensus 91 ~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGi 139 (419)
T 3hno_A 91 REYERLIEVFKAHDIGYFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHV 139 (419)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEe
Confidence 45666777665567999999999888655 58888887766 344443
No 114
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=37.32 E-value=2.3e+02 Score=25.48 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=65.4
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-. +.-.-|.++..-+.+... ..+ .++.++++- ....++| +.++.|.+..+|.+|+.+...+ .
T Consensus 62 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~-~~g-----~~~~~~~~~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~--~ 131 (349)
T 1jye_A 62 LLIGVATSS-LALHAPSQIVAAILSRAD-QLG-----ASVVVSMVE-RSGVEACKTAVHNLLAQRVSGLIINYPLDD--Q 131 (349)
T ss_dssp CEEEEEESC-TTSHHHHHHHHHHHHHHH-HTT-----CEEEEEECC-SSSHHHHHHHHHHHHTTTCSCEEEESCCCH--H
T ss_pred CEEEEEeCC-CCcccHHHHHHHHHHHHH-HcC-----CEEEEEeCC-CCcHHHHHHHHHHHHHCCCCEEEEecCCCC--h
Confidence 478888754 334456677766665332 222 123222210 1112333 3455565578999999875322 2
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI~ 321 (339)
..+...+...+.|...+....+-+. .-+.... .++.. --+|| ..|.++||+.+|........+
T Consensus 132 ~~~~~~~~~~~iPvV~i~~~~~~~~-~~V~~d~~~~~~~--a~~~L~~~G~~~I~~i~g~~~~~~~~~ 196 (349)
T 1jye_A 132 DAIAVEAACTNVPALFLDVSDQTPI-NSIIFSHEDGTRL--GVEHLVALGHQQIALLAGPLSSVSARL 196 (349)
T ss_dssp HHHHHHHHTTTSCEEESSSCTTSSS-CEEEECHHHHHHH--HHHHHHHHTCCSEEEEECCTTSHHHHH
T ss_pred hHHHHHHhhCCCCEEEEcccCCCCC-CEEEEchHHHHHH--HHHHHHHCCCCEEEEEeCCCCCccHHH
Confidence 2344445567889888876422111 1111111 11111 11222 237889999998754433333
No 115
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=37.30 E-value=1e+02 Score=27.45 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=19.6
Q ss_pred eEEecccccCHHHHHHHHHcCCEEec
Q 019556 17 IWITNEIIHNPTVNKRLEEMAVQNIP 42 (339)
Q Consensus 17 Vy~lG~lIHN~~Vv~~L~~~Gv~~v~ 42 (339)
.|-+----.|+.+.+.|+++|..++.
T Consensus 150 ~fr~P~G~~~~~~~~~l~~~G~~~v~ 175 (247)
T 2j13_A 150 YVRPPRGVFSERTLALTKEMGYYNVF 175 (247)
T ss_dssp EECCGGGEECHHHHHHHHHTTCEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHCCCEEEe
Confidence 44433345699999999999999774
No 116
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=36.73 E-value=1.9e+02 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCcE-EeCCCcchHHHHHHHHHHhcCCCeEEEE
Q 019556 68 VEEMVTLNNKNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIH 109 (339)
Q Consensus 68 ~~~~~~l~~~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~iIIi 109 (339)
.+..+.+++.|+.+ +|..+|. ..-..++++.+.|-..|.+
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~--t~~~~~~~~~~~g~d~i~v 133 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVD--DLPARVRLLEEAGADMLAV 133 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCS--SHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHHcCCCEEEE
Confidence 45667778888876 5655553 1234455555556555443
No 117
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.31 E-value=83 Score=25.34 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=42.3
Q ss_pred CCCceEEeccccc-CH-HHHHHHHHcCCEEecCCccccccccccC-CCEEEECCCCCCHHHHHHHHhcCCcEEeC
Q 019556 13 PEEKIWITNEIIH-NP-TVNKRLEEMAVQNIPVEEGKKQFDVVNK-GDVVVLPAFGAAVEEMVTLNNKNVQIVDT 84 (339)
Q Consensus 13 ~~~~Vy~lG~lIH-N~-~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~-g~~VIIrAHGv~~~~~~~l~~~g~~iiDa 84 (339)
.++.|...|.|-. ++ +..+.+++.|-++.... .. =+.||.-.. ..+.-+++|++.|+.|||-
T Consensus 24 ~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sV---------SkkTd~LV~G~~-~g~sKl~KA~~lgI~IisE 88 (112)
T 2ebu_A 24 EGLIFVITGVLESIERDEAKSLIERYGGKVTGNV---------SKKTNYLVMGRD-SGQSKSDKAAALGTKIIDE 88 (112)
T ss_dssp TTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSC---------CSSCCEEEECSS-CCSHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccc---------cCCeeEEEecCC-CChHHHHHHHHcCCeEEeH
Confidence 3567889999954 54 44566778999988653 22 234555442 3356788999999999974
No 118
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=35.73 E-value=2.1e+02 Score=24.49 Aligned_cols=87 Identities=25% Similarity=0.247 Sum_probs=50.2
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.-.. +..-|.++.+-+.+...+ .+ .++.+++ +....++| +.++.|.+..+|.+|+.+...+
T Consensus 8 ~~Ig~i~~~~-~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~--- 75 (289)
T 1dbq_A 8 KSIGLLATSS-EAAYFAEIIEAVEKNCFQ-KG-----YTLILGN--AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP--- 75 (289)
T ss_dssp CEEEEEESCT-TSHHHHHHHHHHHHHHHH-HT-----CEEEEEE--CTTCHHHHHHHHHHHHHTTCSEEEEECSCCC---
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CeEEEEc--CCCChHHHHHHHHHHHhCCCCEEEEEeccCC---
Confidence 5798887543 445667777777654332 22 1233322 12333444 3355555578999999875543
Q ss_pred HHHHHHHHH-hCCCceeeCCC
Q 019556 256 SHLQEIAED-RGIPSYWIDSE 275 (339)
Q Consensus 256 ~rL~eia~~-~~~~ty~Ie~~ 275 (339)
..+.+..++ .+.|...+.+.
T Consensus 76 ~~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 76 EPLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHhccCCCEEEEccC
Confidence 234444444 68898888764
No 119
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=35.52 E-value=23 Score=28.99 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC--CccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE--KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~--~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
.-+|+..+++.-=..|.+-|++.|.+++.|.++ -|+++ .....+|| .=.|...|
T Consensus 56 ~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~v 111 (121)
T 1wn2_A 56 KKVVVKVESEEELFKLKAEAEKLGLPNALIRDAGLTEIPP---------------------GTVTVLAV---GPAPEEIV 111 (121)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTTCTTSCT---------------------TCEEEEEE---EEEEHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCEEEEEe---ccCCHHHH
Confidence 456666676666678888888999999999888 55555 23446666 35677888
Q ss_pred HHHHHHH
Q 019556 321 EDVLKKV 327 (339)
Q Consensus 321 ~eVi~~l 327 (339)
++|...|
T Consensus 112 d~itg~L 118 (121)
T 1wn2_A 112 DKVTGNL 118 (121)
T ss_dssp HHHHTTS
T ss_pred HHhcCCC
Confidence 8876543
No 120
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=35.52 E-value=1.7e+02 Score=26.38 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=51.0
Q ss_pred ceEEEEEc-cCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcc
Q 019556 177 VKVGIANQ-TTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSN 254 (339)
Q Consensus 177 ~~v~vvsQ-TT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSN 254 (339)
.+|+++.- ..+.- .-|..+.+-+.+. .+.++ .++.+.++- .. .+.++.++.|++..+|.+|++|...+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~-~~~~g-----~~~~~~~~~-~~-~~~~~~l~~l~~~~~dgIi~~~~~~~-- 74 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRF-AQENN-----AKCKYVTAS-TD-AEYVPSLSAFADENMGLVVACGSFLV-- 74 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHH-HHHTT-----CEEEEEECC-SG-GGHHHHHHHHHHTTCSEEEEESTTTH--
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHH-HHHhC-----CeEEEEeCC-CH-HHHHHHHHHHHHcCCCEEEECChhHH--
Confidence 47998875 23332 4566666555542 22232 223333331 22 23445678887678999999875432
Q ss_pred hHHHHHHHHHh-CCCceeeCCCC
Q 019556 255 TSHLQEIAEDR-GIPSYWIDSEK 276 (339)
Q Consensus 255 T~rL~eia~~~-~~~ty~Ie~~~ 276 (339)
..+.+++++. +.|..+|.+..
T Consensus 75 -~~~~~~a~~~p~~p~v~id~~~ 96 (318)
T 2fqx_A 75 -EAVIETSARFPKQKFLVIDAVV 96 (318)
T ss_dssp -HHHHHHHHHCTTSCEEEESSCC
T ss_pred -HHHHHHHHHCCCCEEEEEcCcc
Confidence 2366677654 56788887643
No 121
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=35.37 E-value=26 Score=32.65 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=40.9
Q ss_pred cccccccc-----ccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 214 EHFISFNT-----ICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 214 ~~~~~~nT-----IC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
-++.+.|| -|....--+.+.+.|....| ..|||+..|+.|..+..++...+.|.+-
T Consensus 46 l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v--~aviG~~~S~~~~av~~~~~~~~ip~is 106 (435)
T 1dp4_A 46 VRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSP--AVFLGPGCVYSAAPVGRFTAHWRVPLLT 106 (435)
T ss_dssp EEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCC--SEEECCCSHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEEecCcCcccccchhhHHHHHHHHHHhcCc--eEEECCCChHHHHHHHHHHHhcCCcEEc
Confidence 35667888 67766554555555543444 4688999999999999999999887543
No 122
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=35.10 E-value=46 Score=30.71 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=41.1
Q ss_pred ccCCCEEEECCCCCCH---HHHHHHHh--cCCcE-EeCCCcchHHHHHHHHHHhcCCCeEEEEecCC
Q 019556 53 VNKGDVVVLPAFGAAV---EEMVTLNN--KNVQI-VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYS 113 (339)
Q Consensus 53 ~~~g~~VIIrAHGv~~---~~~~~l~~--~g~~i-iDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~ 113 (339)
+++|++|+ .||-+. .+.+.|.+ +.+.| ++-|-|+-.- +..+.++.+.|..+.++++.-
T Consensus 107 I~~g~~Il--T~~~s~Tv~~~l~~a~~~~~~~~V~v~etrP~~qG-~~~a~~L~~~gI~vtli~dsa 170 (276)
T 1vb5_A 107 IDDGDVII--THSFSSTVLEIIRTAKERKKRFKVILTESSPDYEG-LHLARELEFSGIEFEVITDAQ 170 (276)
T ss_dssp CCTTEEEE--CCSCCHHHHHHHHHHHHTTCCEEEEEECCTTTTHH-HHHHHHHHHTTCCEEEECGGG
T ss_pred ccCCCEEE--EeCCChHHHHHHHHHHHcCCeEEEEEeCCCcchhh-HHHHHHHHHCCCCEEEEcHHH
Confidence 34676554 255554 45555544 34445 7789999877 889999999999999999654
No 123
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=34.65 E-value=1.6e+02 Score=26.81 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=56.0
Q ss_pred ceEEEEEccCC-ChHHHHHHHHHHHHHHhhh--cc-cccccccccccccccHHHHHHHHHHHHhhh-hCCcEEEEEcCCC
Q 019556 177 VKVGIANQTTM-LKGETEEIGKLVEKTMMRK--FG-VENVNEHFISFNTICDATQERQDAMYKMVE-EKVDLILVVGGWN 251 (339)
Q Consensus 177 ~~v~vvsQTT~-~~~~~~~i~~~l~~~~~~~--~~-~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~-~~vD~miVVGG~n 251 (339)
.+|+++.-.|- ...-+..+..-+...+.+. .+ .....-++.+.|+-|+..... +.+++|.. .+||.+ ||...
T Consensus 8 ~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~-~~~~~l~~~~~v~~i--ig~~~ 84 (385)
T 1pea_A 8 PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYR-LCAEDFIRNRGVRFL--VGCYM 84 (385)
T ss_dssp CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHH-HHHHHHHHTTCCCEE--EECCS
T ss_pred eEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHH-HHHHHHHhhCCcEEE--ECCCc
Confidence 48888865443 2334455555554433322 00 000112355677777654443 45566653 578876 56667
Q ss_pred CcchHHHHHHHHHhCCCceeeCCC
Q 019556 252 SSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 252 SSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
|+.+..+.+++++.+.|.+.+...
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~ 108 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY 108 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC
T ss_pred hHHHHHHHHHHHhcCceEEECCcc
Confidence 777888899998888887766553
No 124
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=34.20 E-value=34 Score=31.51 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=56.3
Q ss_pred cccccccccHHHHHHHHHHHHhh-hhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccC-CCCcchhhh-ccc
Q 019556 215 HFISFNTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKL-MHG 291 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la-~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~-~~~~~~~~~-~~~ 291 (339)
++.+.|+-|+.....+ ++++|. ...||++ || ..|+.+..+.+++++.+.|.+......++. ....++..+ -.-
T Consensus 51 ~l~~~D~~~~~~~a~~-~~~~li~~~~V~~i--iG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~ 126 (391)
T 3eaf_A 51 NYIKRDYAYNPTTAEE-YYREFRDRYGVIAI--IG-WGTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYST 126 (391)
T ss_dssp EEEEEECTTCHHHHHH-HHHHHHHTTCCSEE--EE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHH
T ss_pred EEEEeCCCCCHHHHHH-HHHHHHhhcCcEEE--EE-cCcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHH
Confidence 5678898888766554 455565 4567765 56 678889999999999998877655544432 111111111 000
Q ss_pred hhhhhhcccc-C-CCcEEEEeecC
Q 019556 292 ELVEKENWLP-K-GQITIGITSGA 313 (339)
Q Consensus 292 ~~~~~~~wl~-~-~~~~VGITAGA 313 (339)
+...-.+|+- . +.++|++..+.
T Consensus 127 ~~~~~~~~l~~~~g~~~iaii~~~ 150 (391)
T 3eaf_A 127 QACSGLAFLASEFGQGKLALAYDS 150 (391)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 1111123431 1 67899999874
No 125
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=34.16 E-value=61 Score=30.81 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=35.2
Q ss_pred ccccHHHHHHHHHHHHhh-hhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCC
Q 019556 220 NTICDATQERQDAMYKMV-EEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 220 nTIC~AT~~RQ~a~~~la-~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.|....|..-...+.++. ..+-|+++|.|+++|.-. +-.|+..+.|.+|++.
T Consensus 73 ~~~~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a---alaA~~~~IPv~h~ea 125 (385)
T 4hwg_A 73 DNTAKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLS---AIAAKRRKIPIFHMEA 125 (385)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGG---HHHHHHTTCCEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHH---HHHHHHhCCCEEEEeC
Confidence 355555555554444443 346899999999988665 3357778888999885
No 126
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=34.12 E-value=23 Score=33.15 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=21.9
Q ss_pred HHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHh
Q 019556 229 RQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDR 265 (339)
Q Consensus 229 RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~ 265 (339)
..+.+..|. ++|+++|-|| ||.+|.++-++.
T Consensus 101 ~~~~~~~l~--~ad~I~v~GG----nt~~l~~~l~~t 131 (291)
T 3en0_A 101 DSGYRLFVE--QCTGIFMTGG----DQLRLCGLLADT 131 (291)
T ss_dssp CHHHHHHHH--HCSEEEECCS----CHHHHHHHHTTC
T ss_pred CHHHHHHHh--cCCEEEECCC----CHHHHHHHHHhC
Confidence 334455563 6999999885 788888887654
No 127
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=34.02 E-value=1.9e+02 Score=26.42 Aligned_cols=91 Identities=10% Similarity=0.020 Sum_probs=58.0
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc-cCCCEEEECCCCCCHHHHHHHH-------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN------- 75 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~~l~------- 75 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ ++++ ..-|.||+ +=..+..+.+.+.
T Consensus 46 ~a~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~e~~~~aDvVi~-~vp~~~~~~~v~~~~~~~~~ 113 (320)
T 4dll_A 46 MARRLCEA--GYALQVWN---RTPARAASLAALGATIHEQ------ARAAARDADIVVS-MLENGAVVQDVLFAQGVAAA 113 (320)
T ss_dssp HHHHHHHT--TCEEEEEC---SCHHHHHHHHTTTCEEESS------HHHHHTTCSEEEE-CCSSHHHHHHHHTTTCHHHH
T ss_pred HHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCEeeCC------HHHHHhcCCEEEE-ECCCHHHHHHHHcchhHHhh
Confidence 44555543 34677764 5888999999999988764 2333 34464444 4333344444332
Q ss_pred -hcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 76 -NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 76 -~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
..|..|||.+=-......+.++.+.+.|...
T Consensus 114 l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 145 (320)
T 4dll_A 114 MKPGSLFLDMASITPREARDHAARLGALGIAH 145 (320)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence 4688899988777777777777777777553
No 128
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=33.93 E-value=20 Score=33.11 Aligned_cols=55 Identities=22% Similarity=0.343 Sum_probs=39.2
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcch-HHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT-SHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT-~rL~eia~~~~~~ty 270 (339)
-++.+.|+-|.....-..++.+|..+ .+..|||+..|+.| .-+..++.+.+.|..
T Consensus 44 l~~~~~D~~~~~~~~~~~~~~~l~~~--~V~aiiG~~~S~~~~~a~~~i~~~~~ip~i 99 (393)
T 3om0_A 44 VEVDIFELQRDSQYETTDTMCQILPK--GVVSVLGPSSSPASASTVSHICGEKEIPHI 99 (393)
T ss_dssp EEEEEEECCSSCHHHHHHHHHHHGGG--CCSCEECCSSCHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEEecCCCchhHHHHHHHHHHhc--CcEEEECCCCchhHHHHHHHHHhccCCCeE
Confidence 35667888886554445566666533 35667899999777 599999999987754
No 129
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=33.83 E-value=1.5e+02 Score=24.88 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=48.6
Q ss_pred CceEEecccccCHHHHHHHHHc--CCEEecCCccccc-cccccC------CCEEEECCCCCCHHHHHHHHhcCCcEEeCC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEM--AVQNIPVEEGKKQ-FDVVNK------GDVVVLPAFGAAVEEMVTLNNKNVQIVDTT 85 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~--Gv~~v~~~~~~~~-~~~~~~------g~~VIIrAHGv~~~~~~~l~~~g~~iiDaT 85 (339)
..|+.+|+++. +.+++.|++. .+..|...-+... +..+|. +..-|+=.||-++..
T Consensus 52 D~ii~~GD~~~-~~~~~~l~~~~~~v~~V~GNhD~~~~~~~lp~~~~~~~~g~~i~l~HG~~~~~--------------- 115 (178)
T 2kkn_A 52 DGVIGLGDYVD-LDTVILLEKFSKEFYGVHGNMDYPDVKEHLPFSKVLLVEGVTIGMCHGWGAPW--------------- 115 (178)
T ss_dssp SEEEESSCBSC-HHHHHHHHHHTSSEEECCCSSSCGGGGGTSCSCEEEEETTEEEEECCSCCCHH---------------
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEECCCCcHHHHhhCCcceEEEECCEEEEEECCCCCCC---------------
Confidence 46999999987 5788999987 4666654211100 123332 223355578864310
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEecCCCceee
Q 019556 86 CPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETV 118 (339)
Q Consensus 86 CP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~ 118 (339)
.....+.+..+.+..+++.|+...|.+.
T Consensus 116 -----~~~~~~~~~~~~~~d~vi~GHtH~~~~~ 143 (178)
T 2kkn_A 116 -----DLKDRLLKVFNEKPQVILFGHTHEPEDT 143 (178)
T ss_dssp -----HHHHHHHHHSSSCCSEEECCSCSSCCEE
T ss_pred -----CHHHHHHHHhccCCCEEEECccCCCCeE
Confidence 0112222222378899999998888765
No 130
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=33.62 E-value=35 Score=29.54 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=30.9
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCccccccccccCCCEE-EECCCCCCHHHHHHH
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVV-VLPAFGAAVEEMVTL 74 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~V-IIrAHGv~~~~~~~l 74 (339)
++.||++|- =|-.-+.+..-.+. .-.+......+..++.++|+| ||+..|..+...+.+
T Consensus 38 ~g~IyvfG~-Ghs~~~~~e~~~~~-e~l~~~~~~~~~~~i~~~D~vii~S~Sg~n~~~ie~A 97 (170)
T 3jx9_A 38 QGKVYLDAY-GEFEGLYPMLSDGP-DQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASL 97 (170)
T ss_dssp TCCEEEEEC-GGGGGGTHHHHTST-TCCTTEEECCTTCCCCTTCEEEEEESCSCCHHHHHHH
T ss_pred CCEEEEECC-CcHHHHHHHHHccc-CCccchhhhhhcCCCCCCCEEEEEeCCCCCHHHHHHH
Confidence 468999883 34444333332221 101100000112366778875 899999988766554
No 131
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=33.26 E-value=18 Score=33.50 Aligned_cols=108 Identities=9% Similarity=-0.069 Sum_probs=61.2
Q ss_pred ccccccccc-HHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhh--hccc
Q 019556 215 HFISFNTIC-DATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYK--LMHG 291 (339)
Q Consensus 215 ~~~~~nTIC-~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~--~~~~ 291 (339)
++.+.|+-| +...- ..++.+|..+ .+..|||+..|+.+.-...++.+.+.|..--... .+.. ..+.+. +-++
T Consensus 42 ~~~~~D~~~~d~~~a-~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~~~~~~~iP~is~~~~-~~~~-~~~~~~~~p~~~ 116 (384)
T 3saj_A 42 LPQIDIVNISDSFEM-TYRFCSQFSK--GVYAIFGFYERRTVNMLTSFCGALHVCFITPSFP-VDTS-NQFVLQLRPELQ 116 (384)
T ss_dssp EEEEEECCTTCHHHH-HHHHHHHHHT--TCSCEEECCCHHHHHHHHHHHHHHTCCEEECSCC-CSSC-CTTEEECSCCCH
T ss_pred ceeeEecccCchhhH-HHHHHHHHhc--CeEEEECCCCHHHHHHHHHHhccCCCCeEecccc-CcCc-cCceEEecccHH
Confidence 456778888 44433 3455566533 5667899999999999999999998875433222 1222 111111 1111
Q ss_pred hh-hhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHHh
Q 019556 292 EL-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFE 329 (339)
Q Consensus 292 ~~-~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~ 329 (339)
.. ..-...| +.++|+|..--.--..+.+.+.+.+++
T Consensus 117 ~a~~~~~~~~--g~~~v~ii~d~~~g~~~~~~~~~~~~~ 153 (384)
T 3saj_A 117 EALISIIDHY--KWQTFVYIYDADRGLSVLQRVLDTAAE 153 (384)
T ss_dssp HHHHHHHHHT--TCCEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcEEEEEEeCchhHHHHHHHHHHhhh
Confidence 11 1111223 567888887333344566666666654
No 132
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=33.17 E-value=1.1e+02 Score=25.07 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=48.9
Q ss_pred CHHHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc-EEeCCCcchHHHHHHHHHHhcCCC
Q 019556 26 NPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDY 104 (339)
Q Consensus 26 N~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~~~~~~~~Gy 104 (339)
+..+++.|+++|+.++= + .| +-.......++..|+. +.+..+|...-+....+++.-.-.
T Consensus 40 ~~~~l~~L~~~G~~~~i----------~-Tg--------~~~~~~~~~~~~lgl~~~~~~~k~k~~~~~~~~~~~~~~~~ 100 (180)
T 1k1e_A 40 DGLGIKMLMDADIQVAV----------L-SG--------RDSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAE 100 (180)
T ss_dssp HHHHHHHHHHTTCEEEE----------E-ES--------CCCHHHHHHHHHHTCCEEEESCSCHHHHHHHHHHHHTCCGG
T ss_pred hHHHHHHHHHCCCeEEE----------E-eC--------CCcHHHHHHHHHcCCceeecCCCCcHHHHHHHHHHcCCCHH
Confidence 55788899998887551 1 12 1234566677777875 578889988888888887755556
Q ss_pred eEEEEecCC
Q 019556 105 TSIIHGKYS 113 (339)
Q Consensus 105 ~iIIiG~~~ 113 (339)
.++.|||..
T Consensus 101 ~~~~vGD~~ 109 (180)
T 1k1e_A 101 QTAYIGDDS 109 (180)
T ss_dssp GEEEEECSG
T ss_pred HEEEECCCH
Confidence 899999987
No 133
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=33.10 E-value=74 Score=29.83 Aligned_cols=120 Identities=11% Similarity=0.047 Sum_probs=60.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchH
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTS 256 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~ 256 (339)
..|+++.- ++-.-|.++.+-+.+...+ .+ .++.+++ .. +-.+.+..|.+..+|.+|+. .++.
T Consensus 26 ~~Igvv~~--~~~~f~~~l~~gi~~~a~~-~g-----~~~~i~~----~~-~~~~~i~~l~~~~vDGiIi~-----~~~~ 87 (412)
T 4fe7_A 26 HRITLLFN--ANKAYDRQVVEGVGEYLQA-SQ-----SEWDIFI----EE-DFRARIDKIKDWLGDGVIAD-----FDDK 87 (412)
T ss_dssp EEEEEECC--TTSHHHHHHHHHHHHHHHH-HT-----CCEEEEE----CC--CC--------CCCSEEEEE-----TTCH
T ss_pred ceEEEEeC--CcchhhHHHHHHHHHHHHh-cC-----CCeEEEe----cC-CccchhhhHhcCCCCEEEEe-----cCCh
Confidence 57999883 5556677888777664332 22 1222222 11 11233555655789999982 2345
Q ss_pred HHHHHHHHhCCCceeeCCCCcc----CCCCcchhhh-ccch-hhhhhccccCCCcEEEEeecCCCc
Q 019556 257 HLQEIAEDRGIPSYWIDSEKRI----GPGNKIAYKL-MHGE-LVEKENWLPKGQITIGITSGASTP 316 (339)
Q Consensus 257 rL~eia~~~~~~ty~Ie~~~el----~~~~~~~~~~-~~~~-~~~~~~wl~~~~~~VGITAGASTP 316 (339)
.+.+.+++.+.|...|.+..+- +...-+.... .++. +.+- .+..|.++||+.+|....
T Consensus 88 ~~~~~l~~~~iPvV~i~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~--L~~~G~r~I~~i~~~~~~ 151 (412)
T 4fe7_A 88 QIEQALADVDVPIVGVGGSYHLAESYPPVHYIATDNYALVESAFLH--LKEKGVNRFAFYGLPESS 151 (412)
T ss_dssp HHHHHHTTCCSCEEEEEECCSSGGGSCSSEEEEECHHHHHHHHHHH--HHHTTCCEEEEECCCTTS
T ss_pred HHHHHHhhCCCCEEEecCCccccccCCCCCEEEeCHHHHHHHHHHH--HHHcCCceEEEecccccc
Confidence 6677777889999888764321 1100011011 1111 1221 122488999999887553
No 134
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=32.60 E-value=85 Score=25.87 Aligned_cols=67 Identities=6% Similarity=-0.055 Sum_probs=51.1
Q ss_pred HHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEEE
Q 019556 29 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSII 108 (339)
Q Consensus 29 Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iII 108 (339)
.++.|+++|+.+. |++ -+-.......++..|+.+++...|...-+....+++.-+...++.
T Consensus 47 ~l~~L~~~g~~~~------------------i~T-~~~~~~~~~~~~~lgi~~~~~~~~k~~~l~~~~~~~~~~~~~~~~ 107 (176)
T 3mmz_A 47 GIAALRKSGLTML------------------ILS-TEQNPVVAARARKLKIPVLHGIDRKDLALKQWCEEQGIAPERVLY 107 (176)
T ss_dssp HHHHHHHTTCEEE------------------EEE-SSCCHHHHHHHHHHTCCEEESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHCCCeEE------------------EEE-CcChHHHHHHHHHcCCeeEeCCCChHHHHHHHHHHcCCCHHHEEE
Confidence 5778888877643 111 123456777888889889999999999999999988777788999
Q ss_pred EecCCC
Q 019556 109 HGKYSH 114 (339)
Q Consensus 109 iG~~~H 114 (339)
+||..+
T Consensus 108 vGD~~n 113 (176)
T 3mmz_A 108 VGNDVN 113 (176)
T ss_dssp EECSGG
T ss_pred EcCCHH
Confidence 999874
No 135
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=32.34 E-value=1.1e+02 Score=27.53 Aligned_cols=84 Identities=17% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHhhhhCCcEEEE-EcCCCCcch---------HHHHHHHHHhCC----CceeeCCCCccCCCCcchhhhccchhhhh
Q 019556 231 DAMYKMVEEKVDLILV-VGGWNSSNT---------SHLQEIAEDRGI----PSYWIDSEKRIGPGNKIAYKLMHGELVEK 296 (339)
Q Consensus 231 ~a~~~la~~~vD~miV-VGG~nSSNT---------~rL~eia~~~~~----~ty~Ie~~~el~~~~~~~~~~~~~~~~~~ 296 (339)
+++.+++ +++|+.|+ ||..+...+ ..+.++ ++.|. ..+|++...++.+ ..+....++..+
T Consensus 147 ~~vl~~~-~~aDiai~GIG~~~~~~~~~~~g~~s~~~~~~L-~~~gaVGdi~~~ffd~~G~~v~-~~~~~r~i~~~l--- 220 (266)
T 3efb_A 147 KTISAYW-DNLDIALVGIGSPAIRDGANWHAFYGGEESDDL-NARQVAGDICSRFFDIHGAMVE-TNMSEKTLSIEM--- 220 (266)
T ss_dssp HHHHHHH-HTCSEEEECCBCCC---------CSCHHHHHHH-HHTTCCEEETTEEECTTSCBCC-CTTGGGBCBCCH---
T ss_pred HHHHHHH-hcCCEEEEecCCCCCCchhHHhcCCCHHHHHHH-HHCCcEEEEecccccCCCCCCC-cchhcceecCCH---
Confidence 4566776 78999999 998653221 223333 34443 5688877777654 112222222222
Q ss_pred hccccCCCcEEEEeecCCCcHHHHH
Q 019556 297 ENWLPKGQITIGITSGASTPDKAVE 321 (339)
Q Consensus 297 ~~wl~~~~~~VGITAGASTP~~lI~ 321 (339)
+-|.+-...|+|.+|.+=-+-+..
T Consensus 221 -~~l~~~~~~i~va~G~~Ka~Ai~a 244 (266)
T 3efb_A 221 -NKLKQARYSIGIAMSEEKYSGIIG 244 (266)
T ss_dssp -HHHHTSSEEEEECCCSCSSCHHHH
T ss_pred -HHHhCCCCEEEEecChHHHHHHHH
Confidence 222133568999999886655443
No 136
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=32.29 E-value=2.4e+02 Score=24.18 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=65.8
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... +-.-|.++.+-+.+... ..+ .++.++++ ....++| +.++.|.+..+|.+|+.+...+..
T Consensus 9 ~~Igvi~~~--~~~~~~~~~~gi~~~~~-~~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~- 77 (288)
T 2qu7_A 9 NIIAFIVPD--QNPFFTEVLTEISHECQ-KHH-----LHVAVASS--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQ- 77 (288)
T ss_dssp EEEEEEESS--CCHHHHHHHHHHHHHHG-GGT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCC-
T ss_pred CEEEEEECC--CCchHHHHHHHHHHHHH-HCC-----CEEEEEeC--CCCHHHHHHHHHHHHHcCccEEEEecCCCChH-
Confidence 579998876 55667778777766432 222 23333332 2223444 345555557899999987654332
Q ss_pred HHHHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHHHH
Q 019556 256 SHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~lI 320 (339)
.+.++ .+.|...+.+..+-+...-+.... ..+.. --+|| ..|.++||+..|.....+..
T Consensus 78 -~~~~l---~~iPvV~~~~~~~~~~~~~V~~d~~~~g~~--a~~~L~~~G~~~I~~i~~~~~~~~~~ 138 (288)
T 2qu7_A 78 -MKREW---LKIPIMTLDRELESTSLPSITVDNEEAAYI--ATKRVLESTCKEVGLLLANPNISTTI 138 (288)
T ss_dssp -CCGGG---GGSCEEEESCCCSSCCCCEEEECHHHHHHH--HHHHHHTSSCCCEEEEECCTTSHHHH
T ss_pred -HHHHh---cCCCEEEEecccCCCCCCEEEECcHHHHHH--HHHHHHHcCCCcEEEEecCCCCCCHH
Confidence 22222 678888887643211100011001 11111 11222 23788999998875433333
No 137
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=31.86 E-value=23 Score=28.72 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=43.3
Q ss_pred cEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCC--CccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHH
Q 019556 242 DLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSE--KRIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKA 319 (339)
Q Consensus 242 D~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~--~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~l 319 (339)
-.-+|+-.+++.-=..|++-|++.|.+++.|.++ -|+++ .....+|| .=.|...
T Consensus 51 ~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~ 106 (117)
T 1rlk_A 51 QRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRGYTQVEP---------------------GTITCIGL---GPDEEEK 106 (117)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCCSSSSSC---------------------CCEEEEEE---EEEEHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCCccCcCC---------------------CCEEEEEe---CcCCHHH
Confidence 3456676676666678888888899999999988 55555 23446666 2457778
Q ss_pred HHHHHHHH
Q 019556 320 VEDVLKKV 327 (339)
Q Consensus 320 I~eVi~~l 327 (339)
|++|...|
T Consensus 107 vd~itg~l 114 (117)
T 1rlk_A 107 LDKITGKY 114 (117)
T ss_dssp HHHHHTTS
T ss_pred HHHHcCCC
Confidence 88776543
No 138
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=31.59 E-value=1e+02 Score=27.54 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=58.1
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc-cCCCEEEECCCCCCHHHHHHH--------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 74 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~~l-------- 74 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ +.++ ..-|.||+ +=..++.+.+.+
T Consensus 16 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~advvi~-~v~~~~~~~~v~~~~~~l~~ 83 (287)
T 3pdu_A 16 MAANLVRA--GFDVTVWN---RNPAKCAPLVALGARQASS------PAEVCAACDITIA-MLADPAAAREVCFGANGVLE 83 (287)
T ss_dssp HHHHHHHH--TCCEEEEC---SSGGGGHHHHHHTCEECSC------HHHHHHHCSEEEE-CCSSHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHHcCCEEEE-EcCCHHHHHHHHcCchhhhh
Confidence 45555544 34677774 5888899999999988764 2333 33454444 434344454444
Q ss_pred -HhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 75 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 75 -~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
-..|..|||.+--......+..+.+.+.|...+
T Consensus 84 ~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pdu_A 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFL 117 (287)
T ss_dssp TCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred cccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 135778899888777777777777777776543
No 139
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=31.39 E-value=45 Score=30.22 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=44.3
Q ss_pred HHHhhhhCCcEEEEEcCCCCc---chHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCCcEEEE
Q 019556 233 MYKMVEEKVDLILVVGGWNSS---NTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQITIGI 309 (339)
Q Consensus 233 ~~~la~~~vD~miVVGG~nSS---NT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGI 309 (339)
+.+.. .++|++||||. |- -..+|...++..|.+.+.|.-.. -+. + ....+.|
T Consensus 177 a~~~~-~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~~~-~~~-----------------d----~~~~~~i 231 (253)
T 1ma3_A 177 AIEEA-KHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNAEP-TMA-----------------D----PIFDVKI 231 (253)
T ss_dssp HHHHH-HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEESSC-CTT-----------------G----GGCSEEE
T ss_pred HHHHH-HhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeCCC-CCC-----------------C----CceeEEE
Confidence 33343 46999999994 42 34578888988888877776432 111 0 1124556
Q ss_pred eecCCCcHHHHHHHHHHHHhhhh
Q 019556 310 TSGASTPDKAVEDVLKKVFEIKR 332 (339)
Q Consensus 310 TAGASTP~~lI~eVi~~l~~~~~ 332 (339)
.+.+ +..+.++++.|.+++.
T Consensus 232 ~~~~---~~~l~~l~~~l~~~~~ 251 (253)
T 1ma3_A 232 IGKA---GEVLPKIVEEVKRLRS 251 (253)
T ss_dssp ESCH---HHHHHHHHHHHHHHTC
T ss_pred eCCH---HHHHHHHHHHHHHHhh
Confidence 5544 4667777777776653
No 140
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=31.30 E-value=2.2e+02 Score=26.81 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=65.0
Q ss_pred ceEEEEEccCCCh-HHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLK-GETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
.+|++|.-.+..- .-+....+-+.+ +.+.++.. .++.+.++ .....+.++.++.|+++.+|++|..|.. -.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~-~~~~~G~~---~~~~~~e~-~~~~~d~~~~l~~l~~~g~d~Ii~~g~~---~~ 98 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKE-LVEALGDK---VETTFLEN-VAEGADAERSIKRIARAGNKLIFTTSFG---YM 98 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHH-HHHHHTTT---EEEEEECS-CCTTHHHHHHHHHHHHTTCSEEEECSGG---GH
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHH-HHHHhCCc---eEEEEEec-CCCHHHHHHHHHHHHHCCCCEEEECCHH---HH
Confidence 4899998434432 233444444432 33334311 11222221 1223466788999987789988777533 34
Q ss_pred HHHHHHHHHh-CCCceeeCCCCccCCCCcchhhhccchh----hhhhccccCCCcEEEEeecCCCcH
Q 019556 256 SHLQEIAEDR-GIPSYWIDSEKRIGPGNKIAYKLMHGEL----VEKENWLPKGQITIGITSGASTPD 317 (339)
Q Consensus 256 ~rL~eia~~~-~~~ty~Ie~~~el~~~~~~~~~~~~~~~----~~~~~wl~~~~~~VGITAGASTP~ 317 (339)
..+.++|++. ..+-.+|.+..+.+ +...+....-|. ..-...+ ...++||..+|--.|.
T Consensus 99 ~~~~~vA~~~Pdv~fv~id~~~~~~--Nv~sv~~~~~eg~ylaG~~A~~~-tk~~kIGfVgg~~~p~ 162 (356)
T 3s99_A 99 DPTVKVAKKFPDVKFEHATGYKTAD--NMSAYNARFYEGRYVQGVIAAKM-SKKGIAGYIGSVPVPE 162 (356)
T ss_dssp HHHHHHHTTCTTSEEEEESCCCCBT--TEEEEEECHHHHHHHHHHHHHHH-CSSCEEEEEECCCCHH
T ss_pred HHHHHHHHHCCCCEEEEEeccccCC--cEEEEEechhHHHHHHHHHHHHh-cCCCEEEEECCCccHH
Confidence 5677888765 23345565543322 222111100011 0001122 2367999999977664
No 141
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=31.07 E-value=97 Score=26.60 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.5
Q ss_pred hCCcEEEEEc-CCCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVG-GWNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVG-G~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++=|++|+|. +-+|.++..+++.|++.|.++.-|-+..
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~ 151 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGS 151 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4679999985 4678888899999999999999887654
No 142
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=31.05 E-value=3.7e+02 Score=25.89 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred ceEEecccccCHHH----HHHHHHcCCEEec--CCccccccccccCCCEEEECCCCCCHHHHHHH-HhcCCcEEeCCCcc
Q 019556 16 KIWITNEIIHNPTV----NKRLEEMAVQNIP--VEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTL-NNKNVQIVDTTCPW 88 (339)
Q Consensus 16 ~Vy~lG~lIHN~~V----v~~L~~~Gv~~v~--~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l-~~~g~~iiDaTCP~ 88 (339)
.|-.+|.+ |+.. ...|+++|+.++. .....+++..++.....+.-.+-.. ..-+.| ++.|+..+....|+
T Consensus 198 ~vnilG~~--~~~~~~ei~~lL~~~Gi~v~~~~~~~~~~el~~~~~A~~ni~~~~~~~-~~A~~Le~~~giP~~~~~~P~ 274 (460)
T 2xdq_A 198 PLVLFGSL--PDPVVTQLTLELKKQGIKVSGWLPAKRYTELPVIDEGYYVAGVNPFLS-RTATTLIRRRKCQLITAPFPI 274 (460)
T ss_dssp CEEEESCC--CHHHHHHHHHHHGGGTCCEEEEESCSSGGGCCCCCTTCEEEESSTTCH-HHHHHHHHTTCCEEECCCCSB
T ss_pred cEEEEEec--CccHHHHHHHHHHHcCCeEEEEeCCCCHHHHHccccCcEEEEcCHhHH-HHHHHHHHHcCCCceecCcCc
Confidence 68899987 7763 6688899998764 1122234444444444333333333 545555 66789999998898
Q ss_pred h-HHHHHHHHHH
Q 019556 89 V-SKVWTSVEKH 99 (339)
Q Consensus 89 V-~kv~~~~~~~ 99 (339)
- ..+-+..+++
T Consensus 275 G~~~T~~~Lr~i 286 (460)
T 2xdq_A 275 GPDGTRTWIEQI 286 (460)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 5 3333333333
No 143
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=31.02 E-value=58 Score=25.18 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=33.1
Q ss_pred hhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceee-CCCCccCC
Q 019556 238 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWI-DSEKRIGP 280 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~I-e~~~el~~ 280 (339)
.+++-++|+-.+ -|.|+. +|-.+|++.+.|.|.+ .+..||..
T Consensus 30 ~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~ 73 (101)
T 1w41_A 30 MGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELGT 73 (101)
T ss_dssp HTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHHH
T ss_pred cCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHHH
Confidence 356778877777 778877 5778899999998875 89888853
No 144
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=30.99 E-value=1.2e+02 Score=26.22 Aligned_cols=68 Identities=7% Similarity=-0.090 Sum_probs=49.8
Q ss_pred HHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc-EEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 29 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 29 Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
.++.|+++|+.+.= + .| .-...+...++..|+. +.+...|...-+....+++.-+...++
T Consensus 84 ~L~~L~~~G~~l~I----------~-T~--------~~~~~~~~~l~~lgi~~~f~~~k~K~~~l~~~~~~lg~~~~~~~ 144 (211)
T 3ij5_A 84 GIRCLITSDIDVAI----------I-TG--------RRAKLLEDRANTLGITHLYQGQSDKLVAYHELLATLQCQPEQVA 144 (211)
T ss_dssp HHHHHHHTTCEEEE----------E-CS--------SCCHHHHHHHHHHTCCEEECSCSSHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE----------E-eC--------CCHHHHHHHHHHcCCchhhcccCChHHHHHHHHHHcCcCcceEE
Confidence 67888888876431 1 11 1344667778888886 678888888888888888877788999
Q ss_pred EEecCCCc
Q 019556 108 IHGKYSHE 115 (339)
Q Consensus 108 IiG~~~Hp 115 (339)
.+||..+-
T Consensus 145 ~vGDs~nD 152 (211)
T 3ij5_A 145 YIGDDLID 152 (211)
T ss_dssp EEECSGGG
T ss_pred EEcCCHHH
Confidence 99998753
No 145
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=29.99 E-value=52 Score=29.75 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=25.5
Q ss_pred hCCcEEEEEcCCCCcc---hHHHHHHHHHhCCCceeeCC
Q 019556 239 EKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN---T~rL~eia~~~~~~ty~Ie~ 274 (339)
.++|++||||. |-. ..+|...++..|.+.+.|.-
T Consensus 176 ~~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 212 (249)
T 1m2k_A 176 ERADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINP 212 (249)
T ss_dssp HHCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred hcCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeC
Confidence 46899999994 423 35788889888887777765
No 146
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.69 E-value=53 Score=29.60 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=25.8
Q ss_pred hCCcEEEEEcCCCCcc---hHHHHHHHHHhCCCceeeCC
Q 019556 239 EKVDLILVVGGWNSSN---TSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN---T~rL~eia~~~~~~ty~Ie~ 274 (339)
.++|++||||- |-. ..+|...++..|.+.+.|.-
T Consensus 179 ~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~ 215 (246)
T 1yc5_A 179 SRASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNL 215 (246)
T ss_dssp HHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECS
T ss_pred hcCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeC
Confidence 46899999994 433 35788889888888777764
No 147
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=29.56 E-value=1.6e+02 Score=24.44 Aligned_cols=67 Identities=7% Similarity=-0.114 Sum_probs=46.4
Q ss_pred HHHHHHHcCCEEecCCccccccccccCCCEEEECCCCCCHHHHHHHHhcCCc-EEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 29 VNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNKNVQ-IVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 29 Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~-iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
.++.|+++|+.+.= + +-+-.......++..|+. +.|...|...-++...+++.-+...++
T Consensus 54 ~l~~L~~~g~~~~i------------------~-T~~~~~~~~~~~~~lgl~~~f~~~~~K~~~~~~~~~~~g~~~~~~~ 114 (189)
T 3mn1_A 54 GIKMLIASGVTTAI------------------I-SGRKTAIVERRAKSLGIEHLFQGREDKLVVLDKLLAELQLGYEQVA 114 (189)
T ss_dssp HHHHHHHTTCEEEE------------------E-CSSCCHHHHHHHHHHTCSEEECSCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHCCCEEEE------------------E-ECcChHHHHHHHHHcCCHHHhcCcCChHHHHHHHHHHcCCChhHEE
Confidence 67888888876431 1 112345677788888886 567666666666777777766678899
Q ss_pred EEecCCC
Q 019556 108 IHGKYSH 114 (339)
Q Consensus 108 IiG~~~H 114 (339)
.+||..+
T Consensus 115 ~vGD~~n 121 (189)
T 3mn1_A 115 YLGDDLP 121 (189)
T ss_dssp EEECSGG
T ss_pred EECCCHH
Confidence 9999864
No 148
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=28.87 E-value=49 Score=26.83 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=30.5
Q ss_pred hCCcEEEEEcCCCCcch--HHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNT--SHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT--~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++| |.+--|.|+ .+|-.+|++++.|.+++.+..+|-.
T Consensus 40 gka~LVv-IA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG~ 82 (113)
T 3jyw_G 40 KKAKLVL-IANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGT 82 (113)
T ss_dssp TCCSEEE-ECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTHH
T ss_pred CCceEEE-EeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 4555554 444455554 5788999999999999999998863
No 149
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=28.80 E-value=30 Score=35.41 Aligned_cols=110 Identities=7% Similarity=-0.019 Sum_probs=63.1
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhh--ccch
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL--MHGE 292 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~--~~~~ 292 (339)
.+.+.|+-|.....-..++.+|..+ ++..|||+..|+.+.....++...+.|-.-- +...+.. ..+.+.. -++.
T Consensus 35 ~~~~~D~~~~~~~~a~~~~~~l~~~--~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~-~~~~~~~-~~~~~r~~p~~~~ 110 (823)
T 3kg2_A 35 TPHIDNLEVANSFAVTNAFCSQFSR--GVYAIFGFYDKKSVNTITSFCGTLHVSFITP-SFPTDGT-HPFVIQMRPDLKG 110 (823)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEECCCTTTHHHHHHHHHHTTCEEEEC-SCCCSSC-CSSEEECSCCCHH
T ss_pred EEEEEEcCCCChHHHHHHHHHHHhc--CcEEEEcCCChhHHHHHHHHhhcCCCceeec-ccCCCCC-CceEEEeCCCHHH
Confidence 4557788884444444566666533 5777899999999999999999988764321 1111111 1111111 1122
Q ss_pred h-hhhhccccCCCcEEEEeecCCCcHHHHHHHHHHHHhh
Q 019556 293 L-VEKENWLPKGQITIGITSGASTPDKAVEDVLKKVFEI 330 (339)
Q Consensus 293 ~-~~~~~wl~~~~~~VGITAGASTP~~lI~eVi~~l~~~ 330 (339)
+ ..-...| +.++|+|-.-..--....+.+.+.+.+.
T Consensus 111 a~~~l~~~~--gw~~v~ii~d~~~g~~~~~~~~~~~~~~ 147 (823)
T 3kg2_A 111 ALLSLIEYY--QWDKFAYLYDSDRGLSTLQAVLDSAAEK 147 (823)
T ss_dssp HHHHHHHHT--TCSEEEEEECGGGCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHC--CCCEEEEEEeCChhHHHHHHHHHHhhcc
Confidence 1 1111224 5678888874333455666666666543
No 150
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=28.70 E-value=46 Score=31.93 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=26.5
Q ss_pred CceEEecccccCHHHHHHHHHcCCEEecC
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQNIPV 43 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~ 43 (339)
.+|++.|-.+.|+.+.+.|++.|+.+|-+
T Consensus 230 ~RI~~~G~~~~~~~l~~~le~~Ga~VV~~ 258 (385)
T 3o3m_B 230 KKVLLTGILADSKDILDILEDNNISVVAD 258 (385)
T ss_dssp EEEEEEESCCCCHHHHHHHHHTTEEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHCCCEEEEE
Confidence 37999999999999999999999999964
No 151
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=28.63 E-value=96 Score=28.74 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=12.8
Q ss_pred hCCcEEEEEcCCCCcc
Q 019556 239 EKVDLILVVGGWNSSN 254 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN 254 (339)
..+|++||+||-.+=|
T Consensus 81 ~~~d~vvv~GGDGTl~ 96 (332)
T 2bon_A 81 FGVATVIAGGGDGTIN 96 (332)
T ss_dssp HTCSEEEEEESHHHHH
T ss_pred cCCCEEEEEccchHHH
Confidence 5689999999976544
No 152
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=28.40 E-value=41 Score=25.30 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=30.6
Q ss_pred hCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++|+-.+-.. |+. +|-.+|++.+.|.+++.+-.||-.
T Consensus 26 gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~ 67 (82)
T 3v7e_A 26 GSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGK 67 (82)
T ss_dssp TCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHH
T ss_pred CCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 45666665555554 554 778899999999999999988853
No 153
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=27.69 E-value=1e+02 Score=28.31 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEeecCCCcHHHHHHHHHHHHhh
Q 019556 306 TIGITSGASTPDKAVEDVLKKVFEI 330 (339)
Q Consensus 306 ~VGITAGASTP~~lI~eVi~~l~~~ 330 (339)
..|+.+-+.||+.++.++.+.|.+.
T Consensus 261 ~~~l~ap~~~p~~vv~~l~~a~~e~ 285 (327)
T 4ddd_A 261 KASLVTTTELSNDLAYKIVKSIATH 285 (327)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHT
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHhC
Confidence 4588899999999999999888764
No 154
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=27.68 E-value=75 Score=30.28 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 233 MYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 233 ~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
+.+.+ .++|++||||..-. .=..+|..++...|.+.+.|.-
T Consensus 200 a~~~~-~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 200 ADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp HHHHH-HTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred HHHHH-hcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 44444 57999999998422 2235788889899988887754
No 155
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=27.64 E-value=3.2e+02 Score=24.25 Aligned_cols=91 Identities=9% Similarity=-0.032 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCcccccccc-ccCCCEEEECCCCCCHHHHHHHH-------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAVEEMVTLN------- 75 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~-~~~g~~VIIrAHGv~~~~~~~l~------- 75 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ +.+ +..-|.||+ +=..+..+.+.+.
T Consensus 18 ~a~~l~~~--G~~V~~~d---~~~~~~~~~~~~g~~~~~~------~~~~~~~aDvvi~-~vp~~~~~~~v~~~~~~~~~ 85 (302)
T 2h78_A 18 MATNLLKA--GYLLNVFD---LVQSAVDGLVAAGASAARS------ARDAVQGADVVIS-MLPASQHVEGLYLDDDGLLA 85 (302)
T ss_dssp HHHHHHHT--TCEEEEEC---SSHHHHHHHHHTTCEECSS------HHHHHTTCSEEEE-CCSCHHHHHHHHHSSSCGGG
T ss_pred HHHHHHhC--CCeEEEEc---CCHHHHHHHHHCCCeEcCC------HHHHHhCCCeEEE-ECCCHHHHHHHHcCchhHHh
Confidence 44445443 34677763 5889999999999988764 233 334565544 4333444444443
Q ss_pred --hcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 76 --NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 76 --~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
..|-.|||.+--.........+.+.+.|...
T Consensus 86 ~l~~~~~vi~~st~~~~~~~~l~~~~~~~g~~~ 118 (302)
T 2h78_A 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAM 118 (302)
T ss_dssp SSCSSCEEEECSCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCCCcEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 3577889965444455555556666667554
No 156
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.63 E-value=33 Score=29.06 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred EEEEEcC----CCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchh-hhhhccccC--CCcEEEEeecCC-
Q 019556 243 LILVVGG----WNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGEL-VEKENWLPK--GQITIGITSGAS- 314 (339)
Q Consensus 243 ~miVVGG----~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~-~~~~~wl~~--~~~~VGITAGAS- 314 (339)
.+|.+|. ...+|+.-|.+..++.|........+.|=.. .+ ..-.+|+ + ++..| ||+|++
T Consensus 17 ~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~-----------~i~~~l~~~~-~~~~~DlV-ittGG~g 83 (169)
T 1y5e_A 17 KIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKE-----------SIQQAVLAGY-HKEDVDVV-LTNGGTG 83 (169)
T ss_dssp EEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHH-----------HHHHHHHHHH-TCTTCSEE-EEECCCS
T ss_pred EEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHH-----------HHHHHHHHHH-hcCCCCEE-EEcCCCC
Q ss_pred -CcHHHHHHHHHHH
Q 019556 315 -TPDKAVEDVLKKV 327 (339)
Q Consensus 315 -TP~~lI~eVi~~l 327 (339)
||+.++.+++..+
T Consensus 84 ~g~~D~t~ea~~~~ 97 (169)
T 1y5e_A 84 ITKRDVTIEAVSAL 97 (169)
T ss_dssp SSTTCCHHHHHHTT
T ss_pred CCCCCCcHHHHHHH
No 157
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=27.60 E-value=1.5e+02 Score=26.17 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred hhHHHHHHhhCCCCc---eEEecccccCHHHHHHHHHcCCEEecCCcccccc----------------ccccCCCEEEEC
Q 019556 2 AFIAYEARKQFPEEK---IWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQF----------------DVVNKGDVVVLP 62 (339)
Q Consensus 2 v~~a~~~~~~~~~~~---Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~----------------~~~~~g~~VIIr 62 (339)
+..+.+++++..+.+ .|.+----.|+.+.+.|+++|..++.-.-+..++ +.+.+|++|++
T Consensus 120 i~~~~~~l~~~~G~~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~d~~Dw~~~~~~~~~~~~~~v~~~~~~g~Iil~- 198 (240)
T 1ny1_A 120 LDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGAIYLL- 198 (240)
T ss_dssp HHHHHHHHHHHHSCCCCCEECCGGGEECHHHHHHHHHTTCEEBCCSBCCSCCCGGGCCCHHHHHHHHHHTCCTTEEEEE-
T ss_pred HHHHHHHHHHHhCCCCCcEEeCCCCCCCHHHHHHHHHcCCEEEECcccccccCCcCCCCHHHHHHHHHhCCCCCeEEEE-
Q ss_pred CCCCCHHHHHHHHhcCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 63 AFGAAVEEMVTLNNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 63 AHGv~~~~~~~l~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
|...+...+.|.. ++..+.++||+.+
T Consensus 199 -Hd~~~~t~~aL~~------------------ii~~l~~~Gy~fv 224 (240)
T 1ny1_A 199 -HTVSRDNAEALDD------------------AITDLKKQGYTFK 224 (240)
T ss_dssp -CSCSTTHHHHHHH------------------HHHHHHHHTCEEE
T ss_pred -cCCChhHHHHHHH------------------HHHHHHHCCCEEE
No 158
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=27.58 E-value=3.3e+02 Score=24.22 Aligned_cols=128 Identities=22% Similarity=0.256 Sum_probs=64.6
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++.... .-.-|.++.+-+.+...+ .+ .++.+.++ ....++| +.++.|.+..+|.+|+.+...+.
T Consensus 59 ~~Igvi~~~~-~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-- 127 (340)
T 1qpz_A 59 KSIGLLATSS-EAAYFAEIIEAVEKNCFQ-KG-----YTLILGNA--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-- 127 (340)
T ss_dssp SEEEEEESCS-CSHHHHHHHHHHHHHHHH-TT-----CEEEEEEC--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCH--
T ss_pred CEEEEEeCCC-CChHHHHHHHHHHHHHHH-cC-----CEEEEEeC--CCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh--
Confidence 5799887543 445567777777654322 22 22333222 2233444 33555555789999998765432
Q ss_pred HHHHHHHHH-hCCCceeeCCCCc-cCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCcHH
Q 019556 256 SHLQEIAED-RGIPSYWIDSEKR-IGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTPDK 318 (339)
Q Consensus 256 ~rL~eia~~-~~~~ty~Ie~~~e-l~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP~~ 318 (339)
.+.+..++ .+.|...+.+..+ .+...-+.... .++.. --+|| ..|.++||+-+|.....+
T Consensus 128 -~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~--a~~~L~~~G~~~I~~i~g~~~~~~ 191 (340)
T 1qpz_A 128 -PLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYM--AGRYLIERGHREIGVIPGPLERNT 191 (340)
T ss_dssp -HHHHHHHTTTTSCEEEEEESSCCCSSSEEEECCHHHHHHH--HHHHHHHHTCCCEEEECCCTTSHH
T ss_pred -HHHHHHHhhCCCCEEEEecccCCCCCCCEEEECHHHHHHH--HHHHHHHCCCCEEEEEeCCCcccc
Confidence 33444444 6788888865321 11000011111 11111 11222 237889999988654333
No 159
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=27.18 E-value=33 Score=33.21 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-.++.|||+..|+.|..+..++...+.|..
T Consensus 116 ~~v~aiiG~~~S~~s~ava~~~~~~~iP~I 145 (481)
T 3mq4_A 116 EKVVGVIGASGSSVSIMVANILRLFQIPQI 145 (481)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHTTTTCCEE
T ss_pred CCcEEEEcCCCcHHHHHHHHHHHhCCCCEE
Confidence 358889999999999999999998887743
No 160
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=27.17 E-value=34 Score=32.13 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=37.8
Q ss_pred ccccccccccHHHHHHHHHHHHhhhhCC-cEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 214 EHFISFNTICDATQERQDAMYKMVEEKV-DLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 214 ~~~~~~nTIC~AT~~RQ~a~~~la~~~v-D~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-++.+.|+-|+.. --+..+..++...- .+..|||+..|+.+..+..++...+.|..
T Consensus 56 l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v~aiiG~~~S~~~~~v~~~~~~~~ip~i 112 (441)
T 1jdp_A 56 FQVAYEDSDCGNR-ALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPML 112 (441)
T ss_dssp EEEEEEECTTSTH-HHHHHHHHHHHTTTCCCSEEECCCSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEecCCCchh-HHHHHHHHHHhhccCCceEEECCCchhhHHHHHHHHhhcCCcEE
Confidence 3556789999865 22233333321111 45678899999999999999999988753
No 161
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=27.02 E-value=53 Score=29.39 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=36.6
Q ss_pred cccccccccHHHHHHHHHHHHhhhhCCcEEEEEcCCC-CcchHHHHHHHHHhCCCceeeCCC
Q 019556 215 HFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWN-SSNTSHLQEIAEDRGIPSYWIDSE 275 (339)
Q Consensus 215 ~~~~~nTIC~AT~~RQ~a~~~la~~~vD~miVVGG~n-SSNT~rL~eia~~~~~~ty~Ie~~ 275 (339)
++..|+.- .. +.+.+.+.+ .++|++||||..- -.-..+|...++..|.+...|.-.
T Consensus 147 ~vv~FGE~-p~---~~~~a~~~~-~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~ 203 (235)
T 1s5p_A 147 HVVWFGEM-PL---GMDEIYMAL-SMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLE 203 (235)
T ss_dssp EECCTTSC-CS---SHHHHHHHH-HHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESS
T ss_pred cEEEeCCC-HH---HHHHHHHHH-hcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECC
Confidence 45566655 32 233444454 4699999999742 224478999998888887777643
No 162
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=26.91 E-value=37 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=27.6
Q ss_pred EEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 244 ILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 244 miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
++|+||..|.=|.-=-+++.. |.+.++|.++.-.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~ 37 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDD 37 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC---
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCH
Confidence 789999999999876678877 878888999764443
No 163
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=26.87 E-value=99 Score=25.26 Aligned_cols=43 Identities=9% Similarity=0.164 Sum_probs=34.4
Q ss_pred hhCCcEEEEEcCCCCcchH-HHHHHHHHhCCCceeeCCCCccCC
Q 019556 238 EEKVDLILVVGGWNSSNTS-HLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 238 ~~~vD~miVVGG~nSSNT~-rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
.+++-++|+-..-.-.|+. +|-.+|++++.|.+++.+-.+|-.
T Consensus 38 ~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~ 81 (126)
T 2xzm_U 38 AKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGE 81 (126)
T ss_dssp HTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHH
T ss_pred cCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHH
Confidence 3677888777777666885 677899999999999999888753
No 164
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=26.87 E-value=1.7e+02 Score=26.54 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=57.6
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc-cCCCEEEECCCCCCHHHHHHHH-------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTLN------- 75 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~~l~------- 75 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ +.++ ..-|.||+ +=..+..+.+.+.
T Consensus 24 ~A~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~e~~~~aDvVi~-~vp~~~~~~~v~~~~~l~~~ 91 (306)
T 3l6d_A 24 MAQVLLKQ--GKRVAIWN---RSPGKAAALVAAGAHLCES------VKAALSASPATIF-VLLDNHATHEVLGMPGVARA 91 (306)
T ss_dssp HHHHHHHT--TCCEEEEC---SSHHHHHHHHHHTCEECSS------HHHHHHHSSEEEE-CCSSHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHC--CCEEEEEe---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEEEE-EeCCHHHHHHHhcccchhhc
Confidence 45555543 34677763 5888999999999987754 2332 23465554 3333333333332
Q ss_pred hcCCcEEeCCCcchHHHHHHHHHHhcCCCeEE
Q 019556 76 NKNVQIVDTTCPWVSKVWTSVEKHKKGDYTSI 107 (339)
Q Consensus 76 ~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~iI 107 (339)
..|-.|||.+=-.....++.++.+.+.|-..+
T Consensus 92 ~~g~ivid~st~~~~~~~~l~~~~~~~g~~~v 123 (306)
T 3l6d_A 92 LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYV 123 (306)
T ss_dssp TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 36788999887777777777777777776543
No 165
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=26.52 E-value=60 Score=28.40 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=43.4
Q ss_pred CCceEEecccccCHHHHHHHHHcCCEEecCCc-----cc-ccc-ccccCCCEEEECCCCCCHHHHHHHHhcCCcEE
Q 019556 14 EEKIWITNEIIHNPTVNKRLEEMAVQNIPVEE-----GK-KQF-DVVNKGDVVVLPAFGAAVEEMVTLNNKNVQIV 82 (339)
Q Consensus 14 ~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~-----~~-~~~-~~~~~g~~VIIrAHGv~~~~~~~l~~~g~~ii 82 (339)
+.++|+.|+ ..-+.|++.|+..+--.+ ++ +.+ ..++...++++|+-+-.+...+.|+++|..+.
T Consensus 67 ~~~i~aVG~-----~Ta~aL~~~G~~~~~~p~~~~~e~L~~~l~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~ 137 (229)
T 3p9z_A 67 NIPAYALSE-----PTAKTLQDHHFKVAFMGEKAHGKEFVQEIFPLLEKKSVLYLRAKEIVSSLDTILLEHGIDFK 137 (229)
T ss_dssp TSCEEESSH-----HHHHHHHHTTCCBCCCCC---------CCHHHHTTCEEEEEEESSCSSCHHHHHHHTTCEEE
T ss_pred CCcEEEECH-----HHHHHHHHcCCCeeecCCcccHHHHHHHHHhhCCCCEEEEECCccchHHHHHHHHHCCCeEE
Confidence 357999995 567899999997542111 11 111 12333346789999889999999999998873
No 166
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=25.73 E-value=49 Score=33.93 Aligned_cols=41 Identities=22% Similarity=0.427 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhCCcEEEEEcCCCCcc-hHHHHHHHHHhCC
Q 019556 227 QERQDAMYKMVEEKVDLILVVGGWNSSN-TSHLQEIAEDRGI 267 (339)
Q Consensus 227 ~~RQ~a~~~la~~~vD~miVVGG~nSSN-T~rL~eia~~~~~ 267 (339)
..|+++++.|-.-.+|.++||||-.|-. ..+|.+.+++.+.
T Consensus 153 e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~~L~e~~~~~~~ 194 (555)
T 2f48_A 153 EHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNGE 194 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcHHHHHHHHHHHHHHhCC
Confidence 3567777777545799999999998844 5578888877663
No 167
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.70 E-value=1.8e+02 Score=24.89 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=60.5
Q ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcch
Q 019556 177 VKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNT 255 (339)
Q Consensus 177 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT 255 (339)
..|+++... ++..-|.++.+-+.+...+ .+ .++.++++- + .++| +.++.|.+..+|.+| ++...+ .
T Consensus 6 ~~Igvi~~~-~~~~~~~~~~~gi~~~a~~-~g-----~~~~~~~~~-~--~~~~~~~~~~l~~~~vdgiI-~~~~~~--~ 72 (280)
T 3gyb_A 6 QLIAVLIDD-YSNPWFIDLIQSLSDVLTP-KG-----YRLSVIDSL-T--SQAGTDPITSALSMRPDGII-IAQDIP--D 72 (280)
T ss_dssp CEEEEEESC-TTSGGGHHHHHHHHHHHGG-GT-----CEEEEECSS-S--SCSSSCHHHHHHTTCCSEEE-EESCC----
T ss_pred CEEEEEeCC-CCChHHHHHHHHHHHHHHH-CC-----CEEEEEeCC-C--chHHHHHHHHHHhCCCCEEE-ecCCCC--h
Confidence 579988865 3445577777777664332 22 234444333 2 2333 334445457899999 776544 2
Q ss_pred HHHHHHHHHhCCCceeeCCCC-ccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCCCc
Q 019556 256 SHLQEIAEDRGIPSYWIDSEK-RIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGASTP 316 (339)
Q Consensus 256 ~rL~eia~~~~~~ty~Ie~~~-el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGASTP 316 (339)
..+.+ .+.|...+.+.. +-+...-+.... ..+.. --++| ..|.++|++..|....
T Consensus 73 ~~~~~----~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~--a~~~L~~~G~~~i~~i~~~~~~ 130 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTRITQASTHDSVANDDFRGAEI--ATKHLIDLGHTHIAHLRVGSGA 130 (280)
T ss_dssp ----------CCCEEEESCCCSSSCSTTEEEECHHHHHHH--HHHHHHHTTCCSEEEECCSSHH
T ss_pred hhHhh----cCCCEEEECCCCCCCCCCCEEEechHHHHHH--HHHHHHHCCCCeEEEEeCCCch
Confidence 23322 788998888765 222111111111 11111 11222 2478899999886543
No 168
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=25.50 E-value=1.3e+02 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=20.4
Q ss_pred CceEEecccccCHHHHHHHHHcC--CEEec
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMA--VQNIP 42 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~G--v~~v~ 42 (339)
..|+.+|+|+. |.+++.|++.+ +.+|.
T Consensus 54 D~ii~~GDl~~-~~~~~~l~~l~~~~~~V~ 82 (190)
T 1s3l_A 54 ETVIHCGDFVS-LFVIKEFENLNANIIATY 82 (190)
T ss_dssp SEEEECSCCCS-THHHHHGGGCSSEEEEEC
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCEEEEe
Confidence 47999999985 67899998654 44454
No 169
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=25.40 E-value=78 Score=25.49 Aligned_cols=42 Identities=24% Similarity=0.525 Sum_probs=31.5
Q ss_pred hCCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++|+-++-.... ..+|-.+|++++.|-+++.+-.+|-.
T Consensus 35 gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~ 77 (121)
T 2lbw_A 35 GEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGA 77 (121)
T ss_dssp SCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHH
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHH
Confidence 4566666555554433 67899999999999999999888853
No 170
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=25.21 E-value=3.7e+02 Score=24.01 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=56.5
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEE-ecCCccccccccc-cCCCEEEECCCCCCHHHHHHH-------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQN-IPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL------- 74 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~-v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~~l------- 74 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+.. ..+ +.++ ..-|.||+ +=..+..+...+
T Consensus 22 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~~------~~e~~~~aDvvi~-~vp~~~~~~~v~~~~~~l~ 89 (303)
T 3g0o_A 22 AARSCLRA--GLSTWGAD---LNPQACANLLAEGACGAAAS------AREFAGVVDALVI-LVVNAAQVRQVLFGEDGVA 89 (303)
T ss_dssp HHHHHHHT--TCEEEEEC---SCHHHHHHHHHTTCSEEESS------STTTTTTCSEEEE-CCSSHHHHHHHHC--CCCG
T ss_pred HHHHHHHC--CCeEEEEE---CCHHHHHHHHHcCCccccCC------HHHHHhcCCEEEE-ECCCHHHHHHHHhChhhHH
Confidence 34444443 34677774 5899999999999877 543 2333 34465554 333333444433
Q ss_pred --HhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 75 --NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 75 --~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
...|..|||.+=-......+..+.+.+.|...
T Consensus 90 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~ 123 (303)
T 3g0o_A 90 HLMKPGSAVMVSSTISSADAQEIAAALTALNLNM 123 (303)
T ss_dssp GGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred hhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeE
Confidence 13577899988766777777777777777553
No 171
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=25.19 E-value=84 Score=29.06 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHh---CCCceeeCCCCccCCCCcchhhhccchhhhhhccccCCC-cEEEEeecCCC
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDR---GIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPKGQ-ITIGITSGAST 315 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~---~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~~~~-~~VGITAGAST 315 (339)
.+|++++.-|-.. -..++++.|++. +.+.-.+.+++. .. -+. -..+..+. -.||||+|+.+
T Consensus 106 ~adlViaat~d~~-~n~~I~~~Ar~~f~~~i~VNvvd~pel-~~--f~~-----------Pa~~~~g~~l~IaIST~Gks 170 (274)
T 1kyq_A 106 AWYIIMTCIPDHP-ESARIYHLCKERFGKQQLVNVADKPDL-CD--FYF-----------GANLEIGDRLQILISTNGLS 170 (274)
T ss_dssp CEEEEEECCSCHH-HHHHHHHHHHHHHCTTSEEEETTCGGG-BS--EEC-----------CEEEEETTTEEEEEEESSSC
T ss_pred CeEEEEEcCCChH-HHHHHHHHHHHhcCCCcEEEECCCccc-Ce--eEe-----------eeEEEeCCCEEEEEECCCCC
Confidence 4566655544222 346899999997 654444544432 21 000 01222344 49999999988
Q ss_pred cH
Q 019556 316 PD 317 (339)
Q Consensus 316 P~ 317 (339)
|-
T Consensus 171 p~ 172 (274)
T 1kyq_A 171 PR 172 (274)
T ss_dssp HH
T ss_pred cH
Confidence 84
No 172
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=25.09 E-value=93 Score=25.83 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=31.9
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++-|++|+|.- -+|.++..+++.|++.|.++..|-+..+
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46799888864 6678899999999999999999987644
No 173
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=24.87 E-value=1.8e+02 Score=24.65 Aligned_cols=120 Identities=9% Similarity=0.033 Sum_probs=53.9
Q ss_pred EEEEEccCCChHHHHHHHHHHHHHHhhhcccccccccccccccccHHHHHHH-HHHHHhhhhCCcEEEEEcCCCCcchHH
Q 019556 179 VGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQ-DAMYKMVEEKVDLILVVGGWNSSNTSH 257 (339)
Q Consensus 179 v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~nTIC~AT~~RQ-~a~~~la~~~vD~miVVGG~nSSNT~r 257 (339)
|+++.-. +.-.-|.++.+-+.+...+ .+ .++.++++- ...++| +.++.|.+..+|.+|+.+...+. .
T Consensus 2 Igvi~~~-~~~~~~~~~~~gi~~~~~~-~g-----~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~---~ 69 (276)
T 2h0a_A 2 VSVLLPF-VATEFYRRLVEGIEGVLLE-QR-----YDLALFPIL--SLARLKRYLENTTLAYLTDGLILASYDLTE---R 69 (276)
T ss_dssp EEEEECC-SCCHHHHHHHHHHHHHHGG-GT-----CEEEECCCC--SCCCCC---------CCCSEEEEESCCCC-----
T ss_pred EEEEECC-CCCHHHHHHHHHHHHHHHH-CC-----CEEEEEeCC--CchhhHHHHHHHHHhCCCCEEEEecCCCCH---H
Confidence 4555432 3445677777777654322 22 123333221 112233 34555555789999998764432 3
Q ss_pred HHHHHHHhCCCceeeCCCCccCCCCcchhhh-ccchhhhhhccc-cCCCcEEEEeecCC
Q 019556 258 LQEIAEDRGIPSYWIDSEKRIGPGNKIAYKL-MHGELVEKENWL-PKGQITIGITSGAS 314 (339)
Q Consensus 258 L~eia~~~~~~ty~Ie~~~el~~~~~~~~~~-~~~~~~~~~~wl-~~~~~~VGITAGAS 314 (339)
.++.+++.+.|...+.+..+ ...-+.... ..+.. --+|| ..|.++||+..|..
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~--~~~~V~~d~~~~~~~--a~~~L~~~G~~~i~~i~~~~ 124 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP--RYDSVYLDNRLGGRL--AGAYLARFPGPIFAIAVEEE 124 (276)
T ss_dssp ----CCSCSSCEEEESSCCT--TSEEEEECSHHHHHH--HHHHHTTSSSCEEEEEECCS
T ss_pred HHHHHhhcCCCEEEEeccCC--CCCEEEEccHHHHHH--HHHHHHHcCCCeEEEEecCc
Confidence 44555567889888876432 100000000 11111 11222 23789999998864
No 174
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=24.47 E-value=63 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=31.6
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++=|++|++.- .+|.++.++++.|++.|.++.-|.+..
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 150 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRD 150 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46799998854 678889999999999999999887753
No 175
>1vpq_A Hypothetical protein TM1631; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.1.32.1
Probab=24.43 E-value=50 Score=30.49 Aligned_cols=48 Identities=8% Similarity=-0.039 Sum_probs=31.1
Q ss_pred ecccccCHHHHHHHHHcCCEEec-CCcc----ccccccccCCCEEEECCCCCCH
Q 019556 20 TNEIIHNPTVNKRLEEMAVQNIP-VEEG----KKQFDVVNKGDVVVLPAFGAAV 68 (339)
Q Consensus 20 lG~lIHN~~Vv~~L~~~Gv~~v~-~~~~----~~~~~~~~~g~~VIIrAHGv~~ 68 (339)
.++=-.++.+.+.|++.|+..|- +.+. ......+ .++.+.+|-||-+.
T Consensus 157 Rh~sW~~~~~~~lL~~~~v~~V~~D~~~~~~~~P~~~~~-t~~~~yvRlHG~~~ 209 (273)
T 1vpq_A 157 RHYSWDREETYEFLRNHGITFVVVDEPKLPGLFPYRPIT-TTDYAYFRFHGRNE 209 (273)
T ss_dssp CBGGGCSHHHHHHHHHHTCEEEEEECCCCTTBCCCCCCC-SSSEEEEEECCCCT
T ss_pred cCchhccHHHHHHHHHcCcEEEEeCCCCCCCCCCccccc-CCCceEEEEeCCCc
Confidence 34434568999999999998763 2111 1111222 36789999999865
No 176
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.17 E-value=71 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=30.9
Q ss_pred hCCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCC
Q 019556 239 EKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGP 280 (339)
Q Consensus 239 ~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~ 280 (339)
+++-++|+-.+-...-.++|-..|+..+.|.+++.+..||..
T Consensus 34 gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eLG~ 75 (101)
T 3v7q_A 34 ARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVLGR 75 (101)
T ss_dssp TCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHHHH
T ss_pred CceeEEEEeccccccchhhhcccccccCCCeeeechHHHHHh
Confidence 567666665555444444777889999999999999998854
No 177
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=23.85 E-value=78 Score=29.93 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCceee
Q 019556 228 ERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWI 272 (339)
Q Consensus 228 ~RQ~a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~I 272 (339)
.|++++..|-.-.+|.+++|||-.|-.|-.. ++ +.+.+...|
T Consensus 81 ~~~~~~~~l~~~~Id~L~~IGGdgS~~~a~~--l~-~~~i~vigi 122 (319)
T 4a3s_A 81 GREKGIANLKKLGIEGLVVIGGDGSYMGAKK--LT-EHGFPCVGV 122 (319)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTHHHHHHH--HH-HTTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcHHHHHHHH--Hh-ccCCcEEEe
Confidence 4566666665567999999999888666542 33 566666554
No 178
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=23.65 E-value=57 Score=32.11 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcchHHHHHHHHHhCCCce
Q 019556 241 VDLILVVGGWNSSNTSHLQEIAEDRGIPSY 270 (339)
Q Consensus 241 vD~miVVGG~nSSNT~rL~eia~~~~~~ty 270 (339)
-.++.|||+..|+.|..++.++...+.|..
T Consensus 116 ~~v~aviG~~~S~~s~~va~~~~~~~iP~I 145 (555)
T 2e4u_A 116 LLIAGVIGGSYSSVSIQVANLLRLFQIPQI 145 (555)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHGGGTCCEE
T ss_pred CceEEEECCCCcHHHHHHHHHHhCcCCceE
Confidence 358889999999999999999998887753
No 179
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=23.57 E-value=1.8e+02 Score=25.86 Aligned_cols=91 Identities=11% Similarity=-0.055 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCccccccccc-cCCCEEEECCCCCCHHHHHHH--------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVV-NKGDVVVLPAFGAAVEEMVTL-------- 74 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~~-~~g~~VIIrAHGv~~~~~~~l-------- 74 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ +.++ ..-|.||+- =..+..+.+.+
T Consensus 16 ~a~~l~~~--G~~V~~~d---r~~~~~~~~~~~g~~~~~~------~~~~~~~aDvvi~~-vp~~~~~~~v~~~~~~l~~ 83 (287)
T 3pef_A 16 MAKNLVKA--GCSVTIWN---RSPEKAEELAALGAERAAT------PCEVVESCPVTFAM-LADPAAAEEVCFGKHGVLE 83 (287)
T ss_dssp HHHHHHHT--TCEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCSEEEEC-CSSHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHC--CCeEEEEc---CCHHHHHHHHHCCCeecCC------HHHHHhcCCEEEEE-cCCHHHHHHHHcCcchHhh
Confidence 34455543 34677664 5888899999999988764 2332 334655543 22233444333
Q ss_pred -HhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 75 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 75 -~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
-..|..|||.+--......+.++.+.+.|...
T Consensus 84 ~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pef_A 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRF 116 (287)
T ss_dssp HCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence 24678899998777777777777777777553
No 180
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=23.47 E-value=24 Score=28.60 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=39.5
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC--ccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK--RIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~--el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
.-+|+..+++.-=..|.+-|++.|.+++.|.++. |+++ .....+|| .=.|...|
T Consensus 50 ~kivlk~~~e~~l~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gt~Tvlai---gP~~~~~v 105 (115)
T 2zv3_A 50 KKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEP---------------------GTLTAVAI---GPEKDEKI 105 (115)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHTCCEEEEEECC----------------------------EEEEEEE---EEECHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeCCceecCC---------------------CCEEEEEe---CcCCHHHH
Confidence 4566666666666788888889999999998775 4444 22345666 34577788
Q ss_pred HHHHHHH
Q 019556 321 EDVLKKV 327 (339)
Q Consensus 321 ~eVi~~l 327 (339)
++|...|
T Consensus 106 d~itg~l 112 (115)
T 2zv3_A 106 DKITGHL 112 (115)
T ss_dssp HHHHTTS
T ss_pred HHHhCCC
Confidence 8776543
No 181
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=23.24 E-value=51 Score=26.78 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCC--ccCCCCcchhhhccchhhhhhccccCCCcEEEEeecCCCcHHHH
Q 019556 243 LILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEK--RIGPGNKIAYKLMHGELVEKENWLPKGQITIGITSGASTPDKAV 320 (339)
Q Consensus 243 ~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~--el~~~~~~~~~~~~~~~~~~~~wl~~~~~~VGITAGASTP~~lI 320 (339)
.-+|+..+++.-=..|++-|++.|.+++.|.++. |+++ .....+|| .=.|...|
T Consensus 55 ~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG~Tei~~---------------------gs~Tvlai---gP~~~~~v 110 (120)
T 1xty_A 55 PKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAGKTQLEP---------------------GTITCLGI---GPAPENLV 110 (120)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCSSSSSCT---------------------TCEEEEEE---EEEEHHHH
T ss_pred cEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCCccccCC---------------------CCeEEEEe---ccCCHHHH
Confidence 4566666666666788888888999999998885 4554 23445666 24577788
Q ss_pred HHHHHHH
Q 019556 321 EDVLKKV 327 (339)
Q Consensus 321 ~eVi~~l 327 (339)
++|...|
T Consensus 111 d~itg~L 117 (120)
T 1xty_A 111 DSITGDL 117 (120)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 7776543
No 182
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=22.88 E-value=1.1e+02 Score=28.60 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=25.9
Q ss_pred hCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 239 EKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 239 ~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.++|++||||-.-. .-..+|.+.|++.|.+.+.|.-
T Consensus 215 ~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 251 (290)
T 3u31_A 215 AKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINI 251 (290)
T ss_dssp HHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred hcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECC
Confidence 46999999996322 2234788888888888877754
No 183
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.85 E-value=38 Score=29.12 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=40.7
Q ss_pred CCCcchHHHHHHHHHhCCCceeeCCCCc-cCCCCcchhhhccchhhhhhccccC-CCcEEEEeecCC-CcHHHHHHHHHH
Q 019556 250 WNSSNTSHLQEIAEDRGIPSYWIDSEKR-IGPGNKIAYKLMHGELVEKENWLPK-GQITIGITSGAS-TPDKAVEDVLKK 326 (339)
Q Consensus 250 ~nSSNT~rL~eia~~~~~~ty~Ie~~~e-l~~~~~~~~~~~~~~~~~~~~wl~~-~~~~VGITAGAS-TP~~lI~eVi~~ 326 (339)
.--+|+.-|.+..++.|.......-+.| .+. +. ..-.+|+.. ++..|=+|.|.| +|+.++.+++..
T Consensus 37 i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~---I~--------~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~ 105 (178)
T 2pjk_A 37 IVDESGDIIKQLLIENGHKIIGYSLVPDDKIK---IL--------KAFTDALSIDEVDVIISTGGTGYSPTDITVETIRK 105 (178)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEECSCHHH---HH--------HHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGG
T ss_pred EeehHHHHHHHHHHHCCCEEEEEEEeCCCHHH---HH--------HHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHH
Confidence 3478999999999999976544332221 111 11 011256632 367776666666 677888888776
Q ss_pred H
Q 019556 327 V 327 (339)
Q Consensus 327 l 327 (339)
+
T Consensus 106 ~ 106 (178)
T 2pjk_A 106 L 106 (178)
T ss_dssp G
T ss_pred H
Confidence 6
No 184
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=22.45 E-value=1.2e+02 Score=28.21 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=15.7
Q ss_pred eEEEEEccCCChHHHHHHHHHHHH
Q 019556 178 KVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 178 ~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
+++++...... .+++.++|++
T Consensus 31 ki~iv~~~~~~---~~~l~~~L~~ 51 (278)
T 1z0s_A 31 RAAVVYKTDGH---VKRIEEALKR 51 (278)
T ss_dssp EEEEEESSSTT---HHHHHHHHHH
T ss_pred EEEEEeCCcHH---HHHHHHHHHH
Confidence 68999887765 6677777765
No 185
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=22.25 E-value=1.5e+02 Score=23.34 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHhcCCcE--EeCCCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeecccc-CcEEEEc
Q 019556 55 KGDVVVLPAFGAAVEEMVTLNNKNVQI--VDTTCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFA-GKYIIVK 131 (339)
Q Consensus 55 ~g~~VIIrAHGv~~~~~~~l~~~g~~i--iDaTCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~-~~~~vv~ 131 (339)
.+.++|+-+=-+...+.+.|++.|..| +|.. ...++++.+.|+. +++|+...+++---.+.. .+.+|+-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~-------~~~~~~~~~~g~~-~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS-------RTRVDELRERGVR-AVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC-------HHHHHHHHHTTCE-EEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-------HHHHHHHHHcCCC-EEECCCCCHHHHHhcCcccCCEEEEE
Confidence 355778876556778899999988876 6654 3345556667886 488999999875333322 2456655
Q ss_pred ChHHH
Q 019556 132 NMKEA 136 (339)
Q Consensus 132 ~~~e~ 136 (339)
.+++.
T Consensus 79 ~~~~~ 83 (140)
T 3fwz_A 79 IPNGY 83 (140)
T ss_dssp CSCHH
T ss_pred CCChH
Confidence 44433
No 186
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.10 E-value=87 Score=25.77 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=31.6
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++-|++|++.- -+|.++..+++.|++.|.++..|-+..+
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~ 148 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGG 148 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46799998864 6678899999999999999988877543
No 187
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.93 E-value=84 Score=25.81 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=30.6
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++-|++|+|.- .+|.++..+++.|++.|.++..|.+..+
T Consensus 95 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 45799888875 4667788888999999999998877543
No 188
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=21.91 E-value=3.6e+02 Score=23.48 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=21.0
Q ss_pred ceEEecccccCHHHHHHHHHcCCEEec
Q 019556 16 KIWITNEIIHNPTVNKRLEEMAVQNIP 42 (339)
Q Consensus 16 ~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~ 42 (339)
..|-+----.|+.+.+.|++.|..++.
T Consensus 125 ~~fr~P~G~~~~~~~~~l~~~G~~~~~ 151 (230)
T 2y8u_A 125 AYMRPPYLETNELVLQVMRDLDYRVIS 151 (230)
T ss_dssp SEECCGGGCCCHHHHHHHHHTTCEEEC
T ss_pred cEEECCCCCCCHHHHHHHHHcCCEEEE
Confidence 345544445799999999999999885
No 189
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=21.82 E-value=1.2e+02 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=31.9
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCC
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEK 276 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~ 276 (339)
++=|++|+|.- .+|.++.++++.|++.|.++.-|.+..
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46799998854 678899999999999999999998754
No 190
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.52 E-value=80 Score=25.70 Aligned_cols=11 Identities=0% Similarity=-0.157 Sum_probs=5.2
Q ss_pred HHHHHHhcCCc
Q 019556 70 EMVTLNNKNVQ 80 (339)
Q Consensus 70 ~~~~l~~~g~~ 80 (339)
+.+++.++|+.
T Consensus 85 v~~~~~~~g~~ 95 (138)
T 1y81_A 85 VAKEAVEAGFK 95 (138)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 44444455553
No 191
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=21.50 E-value=2e+02 Score=26.03 Aligned_cols=91 Identities=9% Similarity=-0.022 Sum_probs=56.9
Q ss_pred HHHHHHhhCCCCceEEecccccCHHHHHHHHHcCCEEecCCcccccccc-ccCCCEEEECCCCCCHHHHHHH--------
Q 019556 4 IAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDV-VNKGDVVVLPAFGAAVEEMVTL-------- 74 (339)
Q Consensus 4 ~a~~~~~~~~~~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~~~~~~~-~~~g~~VIIrAHGv~~~~~~~l-------- 74 (339)
+|...++. +-+|+.+. .|+...+.|.+.|+...++ +.+ +...|.|| -+=..+..+.+.+
T Consensus 36 ~A~~l~~~--G~~V~~~d---r~~~~~~~l~~~g~~~~~~------~~~~~~~aDvvi-~~vp~~~~~~~v~~~~~~l~~ 103 (310)
T 3doj_A 36 MSMNLLKN--GFKVTVWN---RTLSKCDELVEHGASVCES------PAEVIKKCKYTI-AMLSDPCAALSVVFDKGGVLE 103 (310)
T ss_dssp HHHHHHHT--TCEEEEEC---SSGGGGHHHHHTTCEECSS------HHHHHHHCSEEE-ECCSSHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHC--CCeEEEEe---CCHHHHHHHHHCCCeEcCC------HHHHHHhCCEEE-EEcCCHHHHHHHHhCchhhhh
Confidence 44555543 34677764 5788899999999988764 233 23346444 4444444454444
Q ss_pred -HhcCCcEEeCCCcchHHHHHHHHHHhcCCCeE
Q 019556 75 -NNKNVQIVDTTCPWVSKVWTSVEKHKKGDYTS 106 (339)
Q Consensus 75 -~~~g~~iiDaTCP~V~kv~~~~~~~~~~Gy~i 106 (339)
...|-.|||.+=-......+.++.+.+.|...
T Consensus 104 ~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 104 QICEGKGYIDMSTVDAETSLKINEAITGKGGRF 136 (310)
T ss_dssp GCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 13577899988766666777777777777653
No 192
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=21.44 E-value=1e+02 Score=27.08 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=45.4
Q ss_pred CceEEecccccCHHHHHHHHHcCCEEecCCcc-----c-cccc-----cccCCCEEEECCCCCCHHHHHHHHhcCCcEEe
Q 019556 15 EKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG-----K-KQFD-----VVNKGDVVVLPAFGAAVEEMVTLNNKNVQIVD 83 (339)
Q Consensus 15 ~~Vy~lG~lIHN~~Vv~~L~~~Gv~~v~~~~~-----~-~~~~-----~~~~g~~VIIrAHGv~~~~~~~l~~~g~~iiD 83 (339)
.++|+.|+ ..-+.|++.|+...-..++ + +.+. ..+...++++|+-+-.+...+.|+++|+.|..
T Consensus 87 ~~i~aVG~-----~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~ 161 (254)
T 4es6_A 87 QTWCSVGA-----ATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDY 161 (254)
T ss_dssp CEEEESSH-----HHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHTTCEEEE
T ss_pred CEEEEECH-----HHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHCCCEEEE
Confidence 47899886 4668899999976532211 1 1221 23334467899999999999999999998854
Q ss_pred CC
Q 019556 84 TT 85 (339)
Q Consensus 84 aT 85 (339)
..
T Consensus 162 ~~ 163 (254)
T 4es6_A 162 LP 163 (254)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 193
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=21.35 E-value=1.2e+02 Score=29.74 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCcc-hHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCC
Q 019556 240 KVDLILVVGGWNSSN-TSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAS 314 (339)
Q Consensus 240 ~vD~miVVGG~nSSN-T~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAS 314 (339)
.+|++|+ ..+... ...+++.|++.|.+.-.+.++ |+.. .++| .+.-.||||++..
T Consensus 72 ~~~lVi~--at~~~~~n~~i~~~a~~~~i~vn~~d~~-e~~~-----------------~~~pa~~~~~~l~iaIsT~Gk 131 (457)
T 1pjq_A 72 SCWLAIA--ATDDDTVNQRVSDAAESRRIFCNVVDAP-KAAS-----------------FIMPSIIDRSPLMVAVSSGGT 131 (457)
T ss_dssp TCSEEEE--CCSCHHHHHHHHHHHHHTTCEEEETTCT-TSSS-----------------EECCEEEEETTEEEEEECTTS
T ss_pred CccEEEE--cCCCHHHHHHHHHHHHHcCCEEEECCCc-ccCc-----------------eEeeeEEEeCCeEEEEECCCC
Confidence 4776665 444432 467899999998763333332 2332 2332 3445999999887
Q ss_pred CcH
Q 019556 315 TPD 317 (339)
Q Consensus 315 TP~ 317 (339)
||-
T Consensus 132 sp~ 134 (457)
T 1pjq_A 132 SPV 134 (457)
T ss_dssp CHH
T ss_pred ChH
Confidence 775
No 194
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=21.09 E-value=3.3e+02 Score=23.10 Aligned_cols=100 Identities=7% Similarity=-0.015 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCcEEeC-------CCcchHHHHHHHHHHhcCCCeEEEEecCCCceeeeeccccC-cEEEEcChHHHHHhh
Q 019556 69 EEMVTLNNKNVQIVDT-------TCPWVSKVWTSVEKHKKGDYTSIIHGKYSHEETVATASFAG-KYIIVKNMKEAEYVC 140 (339)
Q Consensus 69 ~~~~~l~~~g~~iiDa-------TCP~V~kv~~~~~~~~~~Gy~iIIiG~~~HpEv~gi~g~~~-~~~vv~~~~e~~~~~ 140 (339)
.+.+.|+++|.+|+|- .|.|.--.++.++... +...-|++.-.+=-..++.+-+-+ .+-++.|+..++.-.
T Consensus 24 ~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar 102 (148)
T 4em8_A 24 FLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSR 102 (148)
T ss_dssp HHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSHHHHHHHTTSTTCCEEECSSHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 5778899999999997 4667888888887777 655556665444222111111112 356777777665431
Q ss_pred hhhcCCCCCCCCChHHHHHHHHHhhhcCCCCCCCCCceEEEEEccCCChHHHHHHHHHHHH
Q 019556 141 DYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEK 201 (339)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvsQTT~~~~~~~~i~~~l~~ 201 (339)
+ + +..+|.-+.+=....+.-.+|++...+
T Consensus 103 ~------------------------h--------NnANVL~lG~rvig~~lA~~iv~~fL~ 131 (148)
T 4em8_A 103 E------------------------H--------NDANVLCFGSRYIDPDTAQSVLYTFMT 131 (148)
T ss_dssp H------------------------H--------HCCCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred H------------------------h--------CCCcEEEEchhhhCHHHHHHHHHHHHc
Confidence 1 1 124788888888888888888876643
No 195
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=20.99 E-value=96 Score=29.11 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=39.9
Q ss_pred CCEEEECCCCCCHHHHHHHHhcCCcEEeC-CCc------chHHHHHHHHHHhc-CCCeEEEEecCCC
Q 019556 56 GDVVVLPAFGAAVEEMVTLNNKNVQIVDT-TCP------WVSKVWTSVEKHKK-GDYTSIIHGKYSH 114 (339)
Q Consensus 56 g~~VIIrAHGv~~~~~~~l~~~g~~iiDa-TCP------~V~kv~~~~~~~~~-~Gy~iIIiG~~~H 114 (339)
.|.+++|.++ .....+.++..++.||+| -|. --.=+..+-+.+.. +|.+|.++||-.|
T Consensus 95 ~D~iviR~~~-~~~~~~la~~~~vPVINaG~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~ 160 (299)
T 1pg5_A 95 SDGIVMRHKY-DGASRFASEISDIPVINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKY 160 (299)
T ss_dssp CSEEEEEESS-BTHHHHHHHHCSSCEEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEEECCSS
T ss_pred CCEEEEeCCC-hhHHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCcEEEEECCCCC
Confidence 4679999544 334566666778999998 443 33444444455544 7999999999876
No 196
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=20.98 E-value=94 Score=30.07 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCEEecCCccccccccccCC-CEEEECCCCCCHH--HHHHHHhcCCcEEeC--------CCcchH-----
Q 019556 27 PTVNKRLEEMAVQNIPVEEGKKQFDVVNKG-DVVVLPAFGAAVE--EMVTLNNKNVQIVDT--------TCPWVS----- 90 (339)
Q Consensus 27 ~~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g-~~VIIrAHGv~~~--~~~~l~~~g~~iiDa--------TCP~V~----- 90 (339)
+...+.|++.|+.+..... .+++.++ .-+||-+=|+|+. .+++++++|+.|+.- ..|.+.
T Consensus 46 ~~~~~~L~~~gi~~~~g~~----~~~~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTn 121 (451)
T 3lk7_A 46 NPTAQSLLEEGIKVVCGSH----PLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSN 121 (451)
T ss_dssp CHHHHHHHHTTCEEEESCC----CGGGGGSCEEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSS
T ss_pred ChHHHHHHhCCCEEEECCC----hHHhhcCCCCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCC
Confidence 4466899999998875321 1122223 2355666789864 577888999988721 123331
Q ss_pred ---HHHH-HHHHHhcCCCeEEEEecCCCc
Q 019556 91 ---KVWT-SVEKHKKGDYTSIIHGKYSHE 115 (339)
Q Consensus 91 ---kv~~-~~~~~~~~Gy~iIIiG~~~Hp 115 (339)
-+-. ++.=+...|+.+.+.|.-+-|
T Consensus 122 GKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 122 GKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 1122 233355678878888875544
No 197
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=20.75 E-value=1.1e+02 Score=27.44 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCCcchHHHHHHHHHhCCCceeeCCCCccCCCCcchhhhccchhhhhhcccc----CCCcEEEEeecCCC
Q 019556 240 KVDLILVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLP----KGQITIGITSGAST 315 (339)
Q Consensus 240 ~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~Ie~~~el~~~~~~~~~~~~~~~~~~~~wl~----~~~~~VGITAGAST 315 (339)
.+|++|.--|-..-| ..+++.|+ .|.+.-.++++ +++. -+|| .+.-.||||+|+..
T Consensus 91 ~adLVIaAT~d~~~N-~~I~~~ak-~gi~VNvvD~p-~~~~-----------------f~~Paiv~rg~l~iaIST~G~s 150 (223)
T 3dfz_A 91 NVFFIVVATNDQAVN-KFVKQHIK-NDQLVNMASSF-SDGN-----------------IQIPAQFSRGRLSLAISTDGAS 150 (223)
T ss_dssp SCSEEEECCCCTHHH-HHHHHHSC-TTCEEEC------CCS-----------------EECCEEEEETTEEEEEECTTSC
T ss_pred CCCEEEECCCCHHHH-HHHHHHHh-CCCEEEEeCCc-ccCe-----------------EEEeeEEEeCCEEEEEECCCCC
Confidence 578776554433222 35666665 65543333332 2232 3443 35679999998877
Q ss_pred cHHHHHHHHHHHHhhhhh
Q 019556 316 PDKAVEDVLKKVFEIKRE 333 (339)
Q Consensus 316 P~~lI~eVi~~l~~~~~~ 333 (339)
| .+-..+.+.|++..++
T Consensus 151 P-~la~~iR~~ie~~lp~ 167 (223)
T 3dfz_A 151 P-LLTKRIKEDLSSNYDE 167 (223)
T ss_dssp H-HHHHHHHHHHHHHSCT
T ss_pred c-HHHHHHHHHHHHHccH
Confidence 7 4566666666655443
No 198
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=20.67 E-value=3.2e+02 Score=21.81 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=42.1
Q ss_pred CCCceEEecccccCH-HHHHHHHHcCCEEecCCccccccccccCCCEEEECCCCC--CHHHHHHHHhcCCcEEeCC
Q 019556 13 PEEKIWITNEIIHNP-TVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGA--AVEEMVTLNNKNVQIVDTT 85 (339)
Q Consensus 13 ~~~~Vy~lG~lIHN~-~Vv~~L~~~Gv~~v~~~~~~~~~~~~~~g~~VIIrAHGv--~~~~~~~l~~~g~~iiDaT 85 (339)
.+..|.+.|.|-+++ +..+.++++|-++... +......+|-.--+ +..-+++|++.|+.|||=.
T Consensus 12 ~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~s---------VskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 12 SNMKILTLGKLSRNKDEVKAMIEKLGGKLTGT---------ANKASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SSCEEEECSCCSSCHHHHHHHHHHTTCEEESC---------STTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHCCCEEcCc---------cccCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 356788999996664 4556778999998865 33333344432000 1256789999999999765
No 199
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.60 E-value=1.4e+02 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=13.5
Q ss_pred HHhhhhCCcEEEEEcCCCC
Q 019556 234 YKMVEEKVDLILVVGGWNS 252 (339)
Q Consensus 234 ~~la~~~vD~miVVGG~nS 252 (339)
++++...+|+++|+||-..
T Consensus 74 ~~~~~~~~d~vvv~GGDGT 92 (337)
T 2qv7_A 74 ERAMHENYDVLIAAGGDGT 92 (337)
T ss_dssp HHHTTTTCSEEEEEECHHH
T ss_pred HHHhhcCCCEEEEEcCchH
Confidence 3333356899999999654
No 200
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=20.57 E-value=75 Score=30.84 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHhhhhCCcEEEEEcCCCC-cchHHHHHHHHHhCCCceeeCC
Q 019556 232 AMYKMVEEKVDLILVVGGWNS-SNTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~nS-SNT~rL~eia~~~~~~ty~Ie~ 274 (339)
.+.+.+ .++|++||||..-. .=...|...+...|.+.+.|.-
T Consensus 199 ~A~~~~-~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~ 241 (355)
T 3pki_A 199 LADEAS-RNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (355)
T ss_dssp HHHHHH-HHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECS
T ss_pred HHHHHH-hcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 344444 57999999998422 1234677788889988887764
No 201
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=20.44 E-value=1e+02 Score=28.23 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=28.2
Q ss_pred HHHhhhhCCcEEEEEcCCCCc-chHHHHHHHHHhCCCceeeCC
Q 019556 233 MYKMVEEKVDLILVVGGWNSS-NTSHLQEIAEDRGIPSYWIDS 274 (339)
Q Consensus 233 ~~~la~~~vD~miVVGG~nSS-NT~rL~eia~~~~~~ty~Ie~ 274 (339)
+.+.+ .++|++||||..-.- =..+|...+...|.+...|..
T Consensus 206 a~~~~-~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 247 (273)
T 3riy_A 206 VDREL-AHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNT 247 (273)
T ss_dssp HHHHH-HHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECC
Confidence 33444 469999999974322 224677778888888887764
No 202
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.32 E-value=85 Score=25.92 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=31.0
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++=|++|+|.. .+|.++.++++.|++.|.++.-|.+..+
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 117 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPE 117 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 45798888765 4567788899999999999999987643
No 203
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=20.20 E-value=37 Score=31.29 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHhhhhCCcEEEEEcCCCCcchHHHHHHHHHhCCCcee
Q 019556 232 AMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEDRGIPSYW 271 (339)
Q Consensus 232 a~~~la~~~vD~miVVGG~nSSNT~rL~eia~~~~~~ty~ 271 (339)
++.+|..+. +..|||+..|+.+..+..++.+.+.|..-
T Consensus 63 ~a~~l~~~~--V~aiiG~~~S~~~~a~~~~~~~~~ip~is 100 (395)
T 3h6g_A 63 KACDQLSLG--VAAIFGPSHSSSANAVQSICNALGVPHIQ 100 (395)
T ss_dssp HHHHHHHHC--CSCEECCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhhhcC--cEEEECCCChhHHHHHHHHHhcCCCCeEe
Confidence 444554344 45678999999999999999999887653
No 204
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.03 E-value=96 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred hCCcEEEEEcC-CCCcchHHHHHHHHHhCCCceeeCCCCc
Q 019556 239 EKVDLILVVGG-WNSSNTSHLQEIAEDRGIPSYWIDSEKR 277 (339)
Q Consensus 239 ~~vD~miVVGG-~nSSNT~rL~eia~~~~~~ty~Ie~~~e 277 (339)
++=|++|++.- .+|.++..+++.|++.|.++.-|.+..+
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45699888854 4567778889999999999999987643
Done!