BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019558
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EVY|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4EVY|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus In Complex With Tobramycin
pdb|4F0Y|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
pdb|4F0Y|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ig From Acinetobacter
Haemolyticus, Apo
Length = 166
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 58 LVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLEEW 117
L+A D + + +++ SI+ V + + VG++ G+ V P HRR G+ + L+ + E W
Sbjct: 66 LLAYSDHQAIAMLEASIRFEYVNGT--ETSPVGFLEGIYVLPAHRRSGVATMLIRQAEVW 123
>pdb|2Q0Y|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_295895.1) From Ralstonia Eutropha Jmp134 At 1.80 A
Resolution
Length = 153
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 88 KVGYVLGLRVAPLHRRKGIGSSLVCKLEEWFTSNDVDYAYM-ATE 131
K GY+L L V P HR +GIG +L + E F + +A + ATE
Sbjct: 86 KRGYILNLYVDPSHRERGIGQALXNRAEAEFAERGIAFAVLHATE 130
>pdb|1VKC|A Chain A, Putative Acetyl Transferase From Pyrococcus Furiosus
pdb|1VKC|B Chain B, Putative Acetyl Transferase From Pyrococcus Furiosus
Length = 158
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 55 YKMLVAELDR-ELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCK 113
+K VA +R EL+G + I TV D K+ Y+ + V R GIGS+L+ K
Sbjct: 61 HKFFVALNERSELLGHVWICITLDTV-----DYVKIAYIYDIEVVKWARGLGIGSALLRK 115
Query: 114 LEEWFTSNDVDYAYMATEKDNEA 136
EEW + E DN A
Sbjct: 116 AEEWAKERGAKKIVLRVEIDNPA 138
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 41 TLGDPICRIRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPL 100
T+ DP I + P + +R+L+G I G + + V P D A+ G+ +R PL
Sbjct: 100 TIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSF-MRDGPL 158
Query: 101 HRRKGIGSSLVCKLEEWF-TSNDVDYAYM 128
R + + EW T+ + D A++
Sbjct: 159 DMR--MDPTRGQSAAEWLQTAEEADIAWV 185
>pdb|3JVN|A Chain A, Crystal Structure Of The Acetyltransferase Vf_1542 From
Vibrio Fischeri, Northeast Structural Genomics
Consortium Target Vfr136
Length = 166
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 46 ICRIRNSPMYKMLVAELDRELVGVIQGSIKQV--TVQKPHEDLAKVGYVLGLRVAPLHRR 103
I R + P + VAE D ++G I G ++ TV K L + L + +RR
Sbjct: 47 IARYLDDPECXVYVAEXDDVIIGFITGHFCELISTVSK----LVXXATIDELYIEKEYRR 102
Query: 104 KGIGSSLVCKLEEWFTSNDVDYAYMATEKDNEASVKLFVNKLG 146
+G+ L ++E+ V ++ N+ +++ F NK G
Sbjct: 103 EGVAEQLXXRIEQELKDYGVKEIFVEVWDFNKGALE-FYNKQG 144
>pdb|1S3Z|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S3Z|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And Ribostamycin
pdb|1S5K|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S5K|B Chain B, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 1)
pdb|1S60|A Chain A, Aminoglycoside N-Acetyltransferase Aac(6')-Iy In Complex
With Coa And N-Terminal His(6)-Tag (Crystal Form 2)
pdb|2VBQ|A Chain A, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine.
pdb|2VBQ|B Chain B, Structure Of Aac(6')-Iy In Complex With Bisubstrate Analog
Coa-S-Monomethyl-Acetylneamine
Length = 165
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 58 LVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLEEW 117
+A D +G SI+ V D + V ++ G+ V P R++G+ L+ ++ W
Sbjct: 66 FIAMADGVAIGFADASIRHDYVNGC--DSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQRW 123
Query: 118 FTSNDVDYAYMATEKDNEASVKLFVNKLGY 147
T+ T +N S K+ LG+
Sbjct: 124 GTNKGCREMASDTSPENTISQKVH-QALGF 152
>pdb|3PP9|A Chain A, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|B Chain B, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
pdb|3PP9|C Chain C, 1.6 Angstrom Resolution Crystal Structure Of Putative
Streptothricin Acetyltransferase From Bacillus Anthracis
Str. Ames In Complex With Acetyl Coenzyme A
Length = 187
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 28 EVGPAERVFLFTDTLGDPICRIRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLA 87
+V E+ +L D N P + +A L +++G I ++K + A
Sbjct: 49 DVPSYEKSYLQNDNEELVYNEYINKPNQIIYIALLHNQIIGFI-------VLKKNWNNYA 101
Query: 88 KVGYVLGLRVAPLHRRKGIGSSLVCKLEEWFTSNDVDYAYMATEKDNEASVKLFVNKLGY 147
Y+ + V +R G+G L+ + ++W + + T+ +N A+ K F K G+
Sbjct: 102 ---YIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNXPGIXLETQNNNVAACK-FYEKCGF 157
Query: 148 V 148
V
Sbjct: 158 V 158
>pdb|4E8O|A Chain A, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
pdb|4E8O|B Chain B, Crystal Structure Of Aminoglycoside Antibiotic
6'-N-Acetyltransferase Aac(6')-Ih From Acinetobacter
Baumannii
Length = 167
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 49 IRNSPMYKMLVAELDRELVGVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGS 108
I + ++L ++ + +++ SI+ V + V ++ G+ V P +RR GI +
Sbjct: 58 ITQAHRLQLLAYTDTQQAIAMLEASIRYEYVNGTQT--SPVAFLEGIFVLPEYRRSGIAT 115
Query: 109 SLVCKLEEW 117
LV ++E W
Sbjct: 116 GLVQQVEIW 124
>pdb|1BO4|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
pdb|1BO4|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase:
Serratia Marescens Aminoglycoside 3-N-Acetyltransferase
Length = 168
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 25 RRCEVGPAE------RVFLFTDTLGDPICRIRNSPMYKML-----------VAELDRELV 67
R C +GP + + LF GD ++ P L +A D+E
Sbjct: 28 RTCRLGPDQVKSMRAALDLFGREFGDVATYSQHQPDSDYLGNLLRSKTFIALAAFDQE-- 85
Query: 68 GVIQGSIKQVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLEEWFTSNDVDYAY 127
+ G++ + K + +++ Y+ L V+ HRR+GI ++L+ L+ + Y
Sbjct: 86 -AVVGALAAYVLPKFEQPRSEI-YIYDLAVSGEHRRQGIATALINLLKHEANALGAYVIY 143
Query: 128 MATEKDNEASVKLFVNKLG 146
+ + ++ +V L+ KLG
Sbjct: 144 VQADYGDDPAVALY-TKLG 161
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 167 TPSNVQIRKLRIEEAENLYYK----FMASTEFFPYDIGNI 202
T +VQ ++R+E +N+Y++ F A TEF+ D +I
Sbjct: 228 TSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDI 267
>pdb|2X7B|A Chain A, Crystal Structure Of The N-Terminal Acetylase Ard1 From
Sulfolobus Solfataricus P2
Length = 168
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 57 MLVAELDRELVGVIQGSIK-QVTVQKPHEDLAKVGYVLGLRVAPLHRRKGIGSSLVCKLE 115
VA +D +VG I I+ + K L + G+V+ + V +RRKGI ++L LE
Sbjct: 54 FFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTL---LE 110
Query: 116 EWFTSNDVDY----AYMATEKDNEASVKLFVNKLGYVNFRTPAIL 156
S DY Y+ N ++ L+ +NF+ +L
Sbjct: 111 ASMKSMKNDYNAEEIYLEVRVSNYPAIALYEK----LNFKKVKVL 151
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 74 IKQVTVQKPHEDLAKVGYVLGLRVAPLH----RRKGIGSSLV----------CKLEEWFT 119
+K+V Q P+ +L VG+ LG VA L R KG S+ + L ++ T
Sbjct: 127 LKEVVAQNPNYELVVVGHSLGAAVATLAATDLRGKGYPSAKLYAYASPRVGNAALAKYIT 186
Query: 120 SNDVDYAYMATEKDNEASVKLFVNKLGYVNFRTPAILVHPVNNRMFHTPSNVQI 173
+ ++ + T N+ KL + +GYV+ +P + NN T S++++
Sbjct: 187 AQGNNFRFTHT---NDPVPKLPLLSMGYVHV-SPEYWITSPNNATVST-SDIKV 235
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 147 YVNFRTPAILVHPVNNRMFHTPSNVQIRKLRIEEAENLYYKFMASTEFFPYD 198
Y NFR P + H + + S ++ KL I ++NL + +EF PY+
Sbjct: 165 YQNFRDPFVFWHDESQKWVVVTSIAELHKLAIYTSDNL-KDWKLVSEFGPYN 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,268,472
Number of Sequences: 62578
Number of extensions: 424357
Number of successful extensions: 912
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 17
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)