Query 019559
Match_columns 339
No_of_seqs 135 out of 158
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 03:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kxw_B Sodium channel protein 96.5 0.0016 5.6E-08 42.4 2.8 22 109-130 4-25 (27)
2 2l53_B CAM, voltage-gated sodi 96.5 0.0016 5.3E-08 43.8 2.7 24 109-132 4-27 (31)
3 2ix7_C Myosin-5A; contractIle 93.8 0.031 1E-06 40.1 2.4 36 109-144 3-40 (58)
4 1n2d_C IQ2 and IQ3 motifs from 93.4 0.036 1.2E-06 38.1 2.1 19 111-129 28-46 (48)
5 4dck_A Sodium channel protein 88.1 0.21 7.1E-06 44.2 2.2 23 109-131 128-150 (168)
6 2ix7_C Myosin-5A; contractIle 87.5 0.28 9.6E-06 34.9 2.2 22 110-131 27-48 (58)
7 1n2d_C IQ2 and IQ3 motifs from 82.8 0.52 1.8E-05 32.2 1.7 22 111-132 3-24 (48)
8 3dve_B Voltage-dependent N-typ 66.5 2.2 7.7E-05 26.9 1.2 17 112-128 6-22 (23)
9 3dvk_B Voltage-dependent R-typ 61.2 4.2 0.00015 25.7 1.8 17 112-128 7-23 (23)
10 3bxl_B CAM, voltage-dependent 59.3 4.7 0.00016 26.1 1.8 17 113-129 4-20 (26)
11 1kk8_A Myosin heavy chain, str 57.6 5.6 0.00019 42.4 3.1 35 110-144 778-817 (837)
12 2dfs_A Myosin-5A; myosin-V, in 48.4 7.4 0.00025 42.5 2.3 15 112-126 792-806 (1080)
13 2bl0_A Major plasmodial myosin 46.6 12 0.00042 27.0 2.6 20 110-129 29-48 (63)
14 1wdc_A Scallop myosin; calcium 41.8 16 0.00056 26.3 2.6 20 110-129 31-50 (64)
15 1f8p_A Neuropeptide Y (PNPY); 41.6 11 0.00038 26.1 1.5 28 181-209 9-37 (37)
16 2l60_A Peptide YY; GPCR ligand 41.4 22 0.00075 25.2 3.0 29 180-209 12-41 (41)
17 3gn4_A Myosin-VI; unconvention 39.3 14 0.00049 32.1 2.3 20 110-129 44-63 (148)
18 1w7j_A Myosin VA; motor protei 38.8 13 0.00044 39.5 2.3 21 110-130 767-787 (795)
19 2dfs_A Myosin-5A; myosin-V, in 38.7 18 0.0006 39.6 3.3 22 110-131 838-859 (1080)
20 3g43_E Voltage-dependent L-typ 38.3 13 0.00045 29.6 1.7 20 110-129 62-81 (81)
21 1kk8_A Myosin heavy chain, str 36.7 13 0.00046 39.6 2.0 27 111-146 805-831 (837)
22 3ohg_A Uncharacterized protein 32.4 42 0.0014 31.4 4.4 65 263-336 109-173 (285)
23 3q7m_A Lipoprotein YFGL, BAMB; 28.2 47 0.0016 29.0 3.8 49 290-338 318-373 (376)
24 4eiu_A Uncharacterized hypothe 27.6 44 0.0015 31.3 3.6 50 272-321 13-70 (249)
25 2bf9_A Pancreatic hormone; tur 25.2 74 0.0025 22.0 3.4 27 181-208 9-36 (36)
26 1qbf_A Peptide YY, PYY; PP-fol 23.8 11 0.00038 26.2 -0.9 28 181-209 9-37 (37)
27 3q7m_A Lipoprotein YFGL, BAMB; 23.6 1.2E+02 0.004 26.5 5.4 63 270-332 256-324 (376)
28 3ocp_A PRKG1 protein; serine/t 23.5 88 0.003 23.5 4.1 45 235-279 1-60 (139)
29 2d48_A Interleukin-4; four hel 23.3 55 0.0019 28.1 3.1 30 95-124 27-59 (129)
30 1bba_A Bovine pancreatic polyp 22.1 80 0.0027 21.8 3.1 27 181-208 9-36 (36)
31 1i84_S Smooth muscle myosin he 21.4 51 0.0017 35.9 3.1 21 111-131 792-812 (1184)
32 3no2_A Uncharacterized protein 20.6 1.5E+02 0.0053 25.6 5.6 69 264-334 145-233 (276)
No 1
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.50 E-value=0.0016 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhcc
Q 019559 109 ELDAAATKLQKVYKSYRTRRNL 130 (339)
Q Consensus 109 e~~~AA~~IQKvYRgYRTRR~L 130 (339)
+.+.||++||+.||+|..||.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999865
No 2
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.48 E-value=0.0016 Score=43.77 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhccCC
Q 019559 109 ELDAAATKLQKVYKSYRTRRNLAD 132 (339)
Q Consensus 109 e~~~AA~~IQKvYRgYRTRR~Lag 132 (339)
+.+-||+.||+.||+|+-||.+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567899999999999999998764
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=93.81 E-value=0.031 Score=40.05 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhccCCc--ccchHHHHHHH
Q 019559 109 ELDAAATKLQKVYKSYRTRRNLADC--AVVVEELWWKA 144 (339)
Q Consensus 109 e~~~AA~~IQKvYRgYRTRR~Lag~--av~~e~~Ww~a 144 (339)
....||++||+.||||..|+...-. +++.-+.+|..
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg 40 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRG 40 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999876542 33444555544
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.036 Score=38.14 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhhhhhc
Q 019559 111 DAAATKLQKVYKSYRTRRN 129 (339)
Q Consensus 111 ~~AA~~IQKvYRgYRTRR~ 129 (339)
+.||++||+.+|||..|+.
T Consensus 28 ~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 28 VNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHh
Confidence 4599999999999999864
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=88.13 E-value=0.21 Score=44.23 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhccC
Q 019559 109 ELDAAATKLQKVYKSYRTRRNLA 131 (339)
Q Consensus 109 e~~~AA~~IQKvYRgYRTRR~La 131 (339)
....||+.||+.||.|+-||++.
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~ 150 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLK 150 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 46679999999999999987654
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=87.46 E-value=0.28 Score=34.95 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhhhhhhccC
Q 019559 110 LDAAATKLQKVYKSYRTRRNLA 131 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~La 131 (339)
...||++||..+|||..|+.+.
T Consensus 27 ~r~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 27 MQRAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999998754
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=82.78 E-value=0.52 Score=32.22 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhccCC
Q 019559 111 DAAATKLQKVYKSYRTRRNLAD 132 (339)
Q Consensus 111 ~~AA~~IQKvYRgYRTRR~Lag 132 (339)
..||+.||+.+|||-.|++...
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988643
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=66.49 E-value=2.2 Score=26.94 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhhhhhhh
Q 019559 112 AAATKLQKVYKSYRTRR 128 (339)
Q Consensus 112 ~AA~~IQKvYRgYRTRR 128 (339)
=||..||..||.++.||
T Consensus 6 YAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 6 YAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 48999999999999886
No 9
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=61.18 E-value=4.2 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhhhhhh...
Q 019559 112 AAATKLQKVYKSYRTRR... 128 (339)
Q Consensus 112 ~AA~~IQKvYRgYRTRR... 128 (339)
=|+..||..||.++.|+
T Consensus 7 YA~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHHhccC...
Confidence 48999999999998874
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=59.34 E-value=4.7 Score=26.14 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhhhhc
Q 019559 113 AATKLQKVYKSYRTRRN 129 (339)
Q Consensus 113 AA~~IQKvYRgYRTRR~ 129 (339)
||..||-.||.+..||+
T Consensus 4 Aa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 89999999999999987
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=57.58 E-value=5.6 Score=42.38 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCc-----ccchHHHHHHH
Q 019559 110 LDAAATKLQKVYKSYRTRRNLADC-----AVVVEELWWKA 144 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~Lag~-----av~~e~~Ww~a 144 (339)
+..+|+.||+.+|||..||+..-. ++..-+++|++
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999987543 44555555554
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=48.35 E-value=7.4 Score=42.46 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhhh
Q 019559 112 AAATKLQKVYKSYRT 126 (339)
Q Consensus 112 ~AA~~IQKvYRgYRT 126 (339)
.||+.||+.||||..
T Consensus 792 ~aai~IQ~~~Rg~~a 806 (1080)
T 2dfs_A 792 RAAITIQRYVRGHQA 806 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555444
No 13
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=46.64 E-value=12 Score=26.95 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 019559 110 LDAAATKLQKVYKSYRTRRN 129 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~ 129 (339)
+..|+..||++.|+|=.+|+
T Consensus 29 ~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 29 KSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 45688899999999998874
No 14
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=41.80 E-value=16 Score=26.32 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 019559 110 LDAAATKLQKVYKSYRTRRN 129 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~ 129 (339)
+..|+..||++.|+|=.+|+
T Consensus 31 ~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 31 QRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 45677789999998888764
No 15
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=41.61 E-value=11 Score=26.15 Aligned_cols=28 Identities=32% Similarity=0.633 Sum_probs=21.9
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 019559 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (339)
Q Consensus 181 GkGlskd~kAq~l-~lqhwLE~iDprHRYG 209 (339)
|.+.+.++-||-+ +|+|.|-+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677788888876 799999888 478887
No 16
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=41.37 E-value=22 Score=25.18 Aligned_cols=29 Identities=34% Similarity=0.518 Sum_probs=23.6
Q ss_pred hcCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 019559 180 VGKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (339)
Q Consensus 180 vGkGlskd~kAq~l-~lqhwLE~iDprHRYG 209 (339)
-|.+.|.++-|+=+ +|+|.+-+| -|+|||
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinlv-TR~RyG 41 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNLV-TRQRYX 41 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHH-TTTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 47788899988876 799999988 589998
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=39.28 E-value=14 Score=32.11 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 019559 110 LDAAATKLQKVYKSYRTRRN 129 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~ 129 (339)
..+|+++||++-|+|-+|+.
T Consensus 44 R~~~~i~iQktvR~~L~rkk 63 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRR 63 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999865
No 18
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=38.83 E-value=13 Score=39.45 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 019559 110 LDAAATKLQKVYKSYRTRRNL 130 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~L 130 (339)
+.++|+.||+++|||..||+.
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999764
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.67 E-value=18 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccC
Q 019559 110 LDAAATKLQKVYKSYRTRRNLA 131 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~La 131 (339)
...||+.||..+|||..||++.
T Consensus 838 lr~aai~IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 838 MRDATIALQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666554
No 20
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=38.33 E-value=13 Score=29.62 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 019559 110 LDAAATKLQKVYKSYRTRRN 129 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~ 129 (339)
.-=||..||..||.||.|++
T Consensus 62 KiYA~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 62 KFYATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp CHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 33599999999999999864
No 21
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=36.66 E-value=13 Score=39.56 Aligned_cols=27 Identities=22% Similarity=0.548 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHH
Q 019559 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALD 146 (339)
Q Consensus 111 ~~AA~~IQKvYRgYRTRR~Lag~av~~e~~Ww~ald 146 (339)
..||++||+.+|+|..||+-. ||+.+-
T Consensus 805 r~a~~~IQ~~~R~~~~~r~~~---------w~~l~~ 831 (837)
T 1kk8_A 805 RIGLSVIQRNIRKWLVLRNWQ---------WWKLYS 831 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHTCH---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcchH---------HHHHHh
Confidence 579999999999999998643 887753
No 22
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=32.40 E-value=42 Score=31.36 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=37.1
Q ss_pred hcceEEEEecCeEEEcccCceeeccCCCeEEEEEcCCCceeeecCCCCcccccccCCCCccccceeEEEecCee
Q 019559 263 REEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAHDGIL 336 (339)
Q Consensus 263 Re~YeV~VedGkL~yk~sg~~vdT~~~~kWIFVmdts~~LYvG~KkkG~FQHSSFLaGg~t~AAG~Lvv~dG~L 336 (339)
+..+=+.|+||++++..++. ...-+|.++.+|++.++.... |+-.. ..=--++.+|-+-|+||.+
T Consensus 109 ~~P~G~~I~nG~~i~~~~~~------~~~~~f~i~~dG~~~I~~~~~--~~~~~-~~~~~av~~gp~Lv~nG~~ 173 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYFE------GHDEVLYQLKNGETYVGQADE--ALAHE-ANLLHALGGYGLLVKDGVV 173 (285)
T ss_dssp TEESSCEEETTEEEECCCCT------TCCEEEEEETTSCEEEEEHHH--HHTTG-GGEEEEEEESCEEEETTEE
T ss_pred CceeEEEEECCEEEecCCCC------CcceEEEEeeCCeEEEEecch--hhhhh-cCccEEEEcchhheECCeE
Confidence 44455566667666544321 133588999999999986521 11000 0001255667778888876
No 23
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=28.22 E-value=47 Score=29.02 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCceeeecCCCCcccccccC-----CCCccccceeEEEe--cCeeee
Q 019559 290 SKWIFVLSTSRALYVGQKKKGVFQHSSFL-----SGGAITAAGRLVAH--DGILEV 338 (339)
Q Consensus 290 ~kWIFVmdts~~LYvG~KkkG~FQHSSFL-----aGg~t~AAG~Lvv~--dG~Lka 338 (339)
+.-|||.+.+|.||+=..+.|.+....-+ ...++.+-|.|.+- ||.|.+
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYS 373 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEE
Confidence 45689999889999888888887654333 23344455666553 455543
No 24
>4eiu_A Uncharacterized hypothetical protein; PF12866 family protein, DUF3823, structural genomics, joint for structural genomics, JCSG; HET: PGE; 1.90A {Bacteroides uniformis}
Probab=27.59 E-value=44 Score=31.32 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=37.8
Q ss_pred cCeEEEcccCceeeccCCC--eEEEEEcCC-----Cce-eeecCCCCcccccccCCCC
Q 019559 272 SGKLVYRQTGMFVNTNEDS--KWIFVLSTS-----RAL-YVGQKKKGVFQHSSFLSGG 321 (339)
Q Consensus 272 dGkL~yk~sg~~vdT~~~~--kWIFVmdts-----~~L-YvG~KkkG~FQHSSFLaGg 321 (339)
.|+|+|+.+|++|.|..++ -=|-+.-.+ ..+ ++-.|+-|.|+|+.+..|-
T Consensus 13 ~G~ivd~~tGE~i~~~~g~~gv~i~l~E~g~~~~~~~~~~~~v~~DGtf~Nt~lF~G~ 70 (249)
T 4eiu_A 13 WGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFKGE 70 (249)
T ss_dssp EEEEEETTTCCBCCCCSSTTSCEEEEEECCSSCCBCCSCCEECCTTSEEEEEEECSEE
T ss_pred EEEEEECCCCCEeeeccCCCceEEEEEecccccCCCccCCEEECCCCceeeeeEEcce
Confidence 5999999999999887543 445554432 344 6677899999999998874
No 25
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=25.18 E-value=74 Score=21.96 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=21.6
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCcccc
Q 019559 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (339)
Q Consensus 181 GkGlskd~kAq~l-~lqhwLE~iDprHRY 208 (339)
|.+.+.++-||-. +|+|+|-+|- |+||
T Consensus 9 G~dA~~Eela~Y~~~LrhYiNlvT-RqRy 36 (36)
T 2bf9_A 9 GDDAPVEDLIRFYNDLQQYLNVVT-RHRX 36 (36)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh-ccCC
Confidence 6677888888866 7999999984 6776
No 26
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=23.80 E-value=11 Score=26.15 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=19.3
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 019559 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRYG 209 (339)
Q Consensus 181 GkGlskd~kAq~l-~lqhwLE~iDprHRYG 209 (339)
|.+.+.++-||=+ +|+|.|-+| -|+|||
T Consensus 9 g~da~pEela~Y~~~Lr~Yinlv-TR~RyG 37 (37)
T 1qbf_A 9 GEDASPEELSRYYASLRHYLNLV-TRQRYX 37 (37)
T ss_dssp CCSSSSSTTTTTTTGGGHHHHHT-SSSCC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 4555666666655 688999887 478887
No 27
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=23.57 E-value=1.2e+02 Score=26.49 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=34.6
Q ss_pred EecCeEEEcccCcee-eccCCCeEEEEEcCCCceeeecCCCCccccccc-C----CCCccccceeEEEe
Q 019559 270 VESGKLVYRQTGMFV-NTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSF-L----SGGAITAAGRLVAH 332 (339)
Q Consensus 270 VedGkL~yk~sg~~v-dT~~~~kWIFVmdts~~LYvG~KkkG~FQHSSF-L----aGg~t~AAG~Lvv~ 332 (339)
.++|+++|...-... .-.-.+.-|||.+..+.||+=..+.|......- + ...++.+.|.|.+-
T Consensus 256 ~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 256 LRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG 324 (376)
T ss_dssp TTTCCEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE
T ss_pred CCCCcEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEE
Confidence 336777766542111 111124568888888888887777887654322 1 22344455555543
No 28
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=23.53 E-value=88 Score=23.48 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=26.6
Q ss_pred CCCCccCCCCCCccccccccc----------ccCChhhhcce-----EEEEecCeEEEcc
Q 019559 235 GDGKEVNLEKCPRNVLQRQCI----------KYLGPKEREEF-----EVVVESGKLVYRQ 279 (339)
Q Consensus 235 G~Gk~v~le~CpR~kL~~q~V----------~YL~p~ERe~Y-----eV~VedGkL~yk~ 279 (339)
|-|..++++.++|+..+.+.+ .-|++++.+.. ...+..|.+++.+
T Consensus 1 ~~~~~~~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~ 60 (139)
T 3ocp_A 1 GSGSHVTLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKE 60 (139)
T ss_dssp ---CCCCCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECT
T ss_pred CCCCcccCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeC
Confidence 567889999999988766554 45677766543 2334445554443
No 29
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=23.31 E-value=55 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.7
Q ss_pred CCCCccccCCCCCchHH---HHHHHHHHHhhhh
Q 019559 95 LPEPVVFHSPRPVSELD---AAATKLQKVYKSY 124 (339)
Q Consensus 95 ~p~~~~~~~p~~~~e~~---~AA~~IQKvYRgY 124 (339)
.+-|.+|..|+-.+|.+ +||+.+++.|..+
T Consensus 27 l~V~Dvfaa~KNttEkE~~CrAatvLrq~Y~~H 59 (129)
T 2d48_A 27 LTVTDIFAASKNTTEKETFCRAATVLRQFYSHH 59 (129)
T ss_dssp SEEECGGGSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCchHHHHHHHHHHHHHHHHhc
Confidence 34456888999888877 7999999999876
No 30
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=22.10 E-value=80 Score=21.78 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.5
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCcccc
Q 019559 181 GKGLSKDENAQKL-ALQHWLEAIDPRHRY 208 (339)
Q Consensus 181 GkGlskd~kAq~l-~lqhwLE~iDprHRY 208 (339)
|.+.+.++-||-. +|+|+|-+|- |+||
T Consensus 9 G~dA~pEela~Y~~~Lr~YiNlvT-RqRy 36 (36)
T 1bba_A 9 GDNATPEQMAQYAAELRRYINMLT-RPRY 36 (36)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHHHC-CCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh-cccC
Confidence 6677888888865 7999999984 6676
No 31
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.38 E-value=51 Score=35.89 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhhhhhhhccC
Q 019559 111 DAAATKLQKVYKSYRTRRNLA 131 (339)
Q Consensus 111 ~~AA~~IQKvYRgYRTRR~La 131 (339)
..+|+.||+++|||..||...
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~ 812 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFA 812 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999888764
No 32
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=20.59 E-value=1.5e+02 Score=25.59 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred cceEEEEe-cCeEEEccc-------------CceeeccCCCeEEEEEcCC-Cce---eeecCCCCcccccccCCCCcccc
Q 019559 264 EEFEVVVE-SGKLVYRQT-------------GMFVNTNEDSKWIFVLSTS-RAL---YVGQKKKGVFQHSSFLSGGAITA 325 (339)
Q Consensus 264 e~YeV~Ve-dGkL~yk~s-------------g~~vdT~~~~kWIFVmdts-~~L---YvG~KkkG~FQHSSFLaGg~t~A 325 (339)
...-+.++ +|+++|... |.++=+..++..|+++|.. |.+ |-.....|. +..+..|.++..
T Consensus 145 ~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~--~l~~~~~~~~~~ 222 (276)
T 3no2_A 145 TSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV--QLFFVAQLFPLQ 222 (276)
T ss_dssp TTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC--CCSEEEEEEECT
T ss_pred CCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc--cccccccceEcC
Q ss_pred ceeEEEec--C
Q 019559 326 AGRLVAHD--G 334 (339)
Q Consensus 326 AG~Lvv~d--G 334 (339)
.|.|.|-+ |
T Consensus 223 ~G~i~v~~~~g 233 (276)
T 3no2_A 223 NGGLYICNWQG 233 (276)
T ss_dssp TSCEEEEEECT
T ss_pred CCCEEEEeccC
Done!