Query 019559
Match_columns 339
No_of_seqs 135 out of 158
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 03:39:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019559.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019559hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2mysa2 c.37.1.9 (A:4-33,A:80- 73.2 1 7.4E-05 44.9 3.6 36 110-145 734-774 (794)
2 d1kk8a2 c.37.1.9 (A:1-28,A:77- 64.9 1.9 0.00014 42.7 3.6 36 110-145 730-770 (789)
3 d2mysa2 c.37.1.9 (A:4-33,A:80- 56.9 1.9 0.00014 42.8 2.0 27 110-145 760-786 (794)
4 d2o9ca2 d.110.3.9 (A:4-130) Ba 55.3 4.4 0.00032 31.2 3.5 40 236-280 12-53 (127)
5 d1w7ja2 c.37.1.9 (A:63-792) My 55.3 2.2 0.00016 41.7 2.1 21 110-130 705-725 (730)
6 d1kk8a2 c.37.1.9 (A:1-28,A:77- 54.4 2.3 0.00017 42.2 2.0 27 111-146 757-783 (789)
7 d1xd5a_ b.78.1.1 (A:) Gastrodi 36.1 47 0.0034 24.0 6.5 44 264-307 19-67 (112)
8 d1onwa1 b.92.1.7 (A:1-62,A:347 25.7 69 0.005 23.4 5.9 74 259-335 19-96 (105)
9 d1ijqa1 b.68.5.1 (A:377-642) L 23.6 1.1E+02 0.0077 24.7 7.3 99 224-331 129-258 (266)
10 d2hu7a1 b.69.7.2 (A:9-321) Acy 22.2 35 0.0025 30.4 4.0 76 252-328 113-204 (313)
11 d1npea_ b.68.5.1 (A:) Nidogen 21.0 1.1E+02 0.0084 24.6 7.0 42 290-332 218-260 (263)
No 1
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=73.23 E-value=1 Score=44.88 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCc-----ccchHHHHHHHH
Q 019559 110 LDAAATKLQKVYKSYRTRRNLADC-----AVVVEELWWKAL 145 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~Lag~-----av~~e~~Ww~al 145 (339)
+..+|++||+.+|||..||..+-. ++..=+++|+..
T Consensus 734 l~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~ 774 (794)
T d2mysa2 734 LAEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSF 774 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999877532 455556666544
No 2
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=64.89 E-value=1.9 Score=42.74 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhhhhhccCC-----cccchHHHHHHHH
Q 019559 110 LDAAATKLQKVYKSYRTRRNLAD-----CAVVVEELWWKAL 145 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~Lag-----~av~~e~~Ww~al 145 (339)
..++|+.||+++|+|..|++..- +++..-+++|++.
T Consensus 730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~ 770 (789)
T d1kk8a2 730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKW 770 (789)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999986542 3555566666654
No 3
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=56.94 E-value=1.9 Score=42.76 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHH
Q 019559 110 LDAAATKLQKVYKSYRTRRNLADCAVVVEELWWKAL 145 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~Lag~av~~e~~Ww~al 145 (339)
+..||+.||+.||+|.+||.- .||+.+
T Consensus 760 ~r~a~~~IQ~~~R~~~~~r~~---------~~~rl~ 786 (794)
T d2mysa2 760 RRESIFCIQYNVRSFMNVKHW---------PWMKLF 786 (794)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------HHHHHH
Confidence 367999999999999999875 488765
No 4
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=55.26 E-value=4.4 Score=31.22 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=34.6
Q ss_pred CCCccCCCCCCcccccccccccCChhhhcceEEEEe--cCeEEEccc
Q 019559 236 DGKEVNLEKCPRNVLQRQCIKYLGPKEREEFEVVVE--SGKLVYRQT 280 (339)
Q Consensus 236 ~Gk~v~le~CpR~kL~~q~V~YL~p~ERe~YeV~Ve--dGkL~yk~s 280 (339)
-|.+|||..|-| |.|+..+.-|=--+++.++ ++++++...
T Consensus 12 ~~~~vdL~nCer-----EPIHipG~IQphG~LLald~~~~~I~~~S~ 53 (127)
T d2o9ca2 12 GGPEITTENCER-----EPIHIPGSIQPHGALLTADGHSGEVLQMSL 53 (127)
T ss_dssp TCCCCCTTTGGG-----CCTTCCSEECTTSEEEEEETTTCBEEEEET
T ss_pred CCCccCcccccc-----ccccCCCccCCCeEEEEEECCCCEEEEECC
Confidence 378999999985 8899999999999999997 688877654
No 5
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=55.26 E-value=2.2 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcc
Q 019559 110 LDAAATKLQKVYKSYRTRRNL 130 (339)
Q Consensus 110 ~~~AA~~IQKvYRgYRTRR~L 130 (339)
+..||++||++||+|-+||+.
T Consensus 705 l~~~~~~iQ~~~R~~l~Rk~~ 725 (730)
T d1w7ja2 705 LRAACIRIQKTIRGWLMRKKY 725 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999753
No 6
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=54.37 E-value=2.3 Score=42.22 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhhhhccCCcccchHHHHHHHHH
Q 019559 111 DAAATKLQKVYKSYRTRRNLADCAVVVEELWWKALD 146 (339)
Q Consensus 111 ~~AA~~IQKvYRgYRTRR~Lag~av~~e~~Ww~ald 146 (339)
..|++.|||.||+|..||.. +||+.+.
T Consensus 757 ~~ai~~iQ~~~R~~~~rr~~---------~~~~l~~ 783 (789)
T d1kk8a2 757 RIGLSVIQRNIRKWLVLRNW---------QWWKLYS 783 (789)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccc---------HHHHHHH
Confidence 34888999999999999876 4888654
No 7
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]}
Probab=36.10 E-value=47 Score=23.97 Aligned_cols=44 Identities=11% Similarity=0.145 Sum_probs=29.2
Q ss_pred cceEEEEe-cCeEEEcccCceeeccC----CCeEEEEEcCCCceeeecC
Q 019559 264 EEFEVVVE-SGKLVYRQTGMFVNTNE----DSKWIFVLSTSRALYVGQK 307 (339)
Q Consensus 264 e~YeV~Ve-dGkL~yk~sg~~vdT~~----~~kWIFVmdts~~LYvG~K 307 (339)
-.|.+.+. ||.|+.-.++.+|-.+. ..--.++|..+|+|++-..
T Consensus 19 g~~~l~~q~DGNLvly~~~~~vW~s~~~~~~~~~~l~l~~dGnLvl~~~ 67 (112)
T d1xd5a_ 19 GGYLFIIQNDCNLVLYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYSG 67 (112)
T ss_dssp TTEEEEECTTSCEEEEETTEEEEECCCTTSCSSEEEEECTTSCEEEEET
T ss_pred CCEEEEEcCCCCEEEEcCCcEEEEccCccCCCCcEEEEeccccEEEEec
Confidence 35777775 88887656777763221 2234688899999987554
No 8
>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]}
Probab=25.72 E-value=69 Score=23.38 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=41.5
Q ss_pred ChhhhcceEEEEecCeEEEcccCceeeccCCCeEEEEEcCCCceeeecCCCCcccccccCCCCc----cccceeEEEecC
Q 019559 259 GPKEREEFEVVVESGKLVYRQTGMFVNTNEDSKWIFVLSTSRALYVGQKKKGVFQHSSFLSGGA----ITAAGRLVAHDG 334 (339)
Q Consensus 259 ~p~ERe~YeV~VedGkL~yk~sg~~vdT~~~~kWIFVmdts~~LYvG~KkkG~FQHSSFLaGg~----t~AAG~Lvv~dG 334 (339)
+|+.+..-.|.|++||+.+--++......++.+ |.|..|.+-+=-=--+.-||-+|+..+. +.++|.-.+.+|
T Consensus 19 ~~~~~~~~dI~I~~g~I~~I~~~~~~~~~~~~~---vID~~G~~v~PG~ID~H~h~~~~~~p~~~~~~~~~~G~~~v~~~ 95 (105)
T d1onwa1 19 APEDRGICDVLVANGKIIAVASNIPSDIVPNCT---VVDLSGQILCPEILPGNDADLLVMTPELRIEQVYARGKLMVKDG 95 (105)
T ss_dssp SSSEEEECEEEEETTEEEEEETTCCTTSSSSCE---EEECTTCEEEESCCTTSBCCEEEECTTCCEEEEEETTEEEEETT
T ss_pred cCCCCeeeeEEEECCEEEEeccCcccccCCCCe---EEcCCCCEEeCCEeecccCcceecCCCcchHHHhhcceEEeccC
Confidence 566777778889999998865554443333333 3476555433111112234455554443 356677777776
Q ss_pred e
Q 019559 335 I 335 (339)
Q Consensus 335 ~ 335 (339)
.
T Consensus 96 ~ 96 (105)
T d1onwa1 96 K 96 (105)
T ss_dssp E
T ss_pred c
Confidence 4
No 9
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.57 E-value=1.1e+02 Score=24.74 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=50.4
Q ss_pred CCCCceEEeecCCCCc---cCCCCCCcccccccccccCChhhhcceEEEEe--cCeEEEccc-----------Cc---ee
Q 019559 224 STQPFFYWLDVGDGKE---VNLEKCPRNVLQRQCIKYLGPKEREEFEVVVE--SGKLVYRQT-----------GM---FV 284 (339)
Q Consensus 224 s~q~FFyWLD~G~Gk~---v~le~CpR~kL~~q~V~YL~p~ERe~YeV~Ve--dGkL~yk~s-----------g~---~v 284 (339)
....+.||.|.|..-. .+++.-.+..|..+.+.+- --+.|+ +++|.|.-. |. .+
T Consensus 129 ~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p-------~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~ 201 (266)
T d1ijqa1 129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP-------NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 201 (266)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE-------EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cccCeEEEeccCCCcceeEeccCCCceeccccccccee-------eEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE
Confidence 4456889999876533 3556656666655544332 123333 344444321 21 11
Q ss_pred eccC-----------CCeEEEEEc-CCCceeeecCCCCcccccccCCCCccccceeEEE
Q 019559 285 NTNE-----------DSKWIFVLS-TSRALYVGQKKKGVFQHSSFLSGGAITAAGRLVA 331 (339)
Q Consensus 285 dT~~-----------~~kWIFVmd-ts~~LYvG~KkkG~FQHSSFLaGg~t~AAG~Lvv 331 (339)
-+.. .+.+||+.| .++++|.=.|..|. ....+.++.....|..++
T Consensus 202 ~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~--~~~~~~~~~~~p~~i~v~ 258 (266)
T d1ijqa1 202 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS--DVNLLAENLLSPEDMVLF 258 (266)
T ss_dssp EECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC--CCEEEECSCSCCCCEEEE
T ss_pred EeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCc--ceEEEEcCCCCceEEEEE
Confidence 1111 256788887 45777777776654 223344444444444443
No 10
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Probab=22.15 E-value=35 Score=30.38 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=57.1
Q ss_pred ccccccCChhhhcceEEEEecCeEEE-----------cccCceeecc----CCCeEEEEEcC-CCceeeecCCCCccccc
Q 019559 252 RQCIKYLGPKEREEFEVVVESGKLVY-----------RQTGMFVNTN----EDSKWIFVLST-SRALYVGQKKKGVFQHS 315 (339)
Q Consensus 252 ~q~V~YL~p~ERe~YeV~VedGkL~y-----------k~sg~~vdT~----~~~kWIFVmdt-s~~LYvG~KkkG~FQHS 315 (339)
.+.|-+.+..|-+.|++.+|.|+|.- +-+|..+--. .+..=.|+.|- ||+|=|=.-+-|.|..-
T Consensus 113 dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS~~~a 192 (313)
T d2hu7a1 113 GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSA 192 (313)
T ss_dssp SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECCSSEEEEEE
T ss_pred CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecCCCCcccce
Confidence 46677888999999999999999852 2233333211 22334899998 99999998999999999
Q ss_pred ccCCCCcccccee
Q 019559 316 SFLSGGAITAAGR 328 (339)
Q Consensus 316 SFLaGg~t~AAG~ 328 (339)
+.+-|..+ +||.
T Consensus 193 y~~~gnKV-~sdy 204 (313)
T d2hu7a1 193 SISPGMKV-TAGL 204 (313)
T ss_dssp EECTTSCE-EEEE
T ss_pred eEccCcee-eecc
Confidence 99999998 4443
No 11
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.01 E-value=1.1e+02 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=25.2
Q ss_pred CeEEEEEcC-CCceeeecCCCCcccccccCCCCccccceeEEEe
Q 019559 290 SKWIFVLST-SRALYVGQKKKGVFQHSSFLSGGAITAAGRLVAH 332 (339)
Q Consensus 290 ~kWIFVmdt-s~~LYvG~KkkG~FQHSSFLaGg~t~AAG~Lvv~ 332 (339)
+.+||+.|. +++++.=.|..|.-. ..++.+...-.+|..+++
T Consensus 218 ~~~lYwtd~~~~~I~~~~~~~g~~~-~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 218 GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEEC
T ss_pred CCEEEEEECCCCEEEEEECCCCccc-eEECCCCCCCcceEEEeC
Confidence 678999984 578888888766533 223323333344655554
Done!