BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019560
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GXH3|OSB2_ARATH Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1
SV=2
Length = 371
Score = 290 bits (743), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 155/301 (51%), Positives = 206/301 (68%), Gaps = 23/301 (7%)
Query: 44 ATTKTTTSKDVVWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA 103
A+ TT ++ P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +A
Sbjct: 75 ASVTATTENEL--PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSA 132
Query: 104 SHS--LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLN 158
S S WIPI+FEGDLA A+ ++ KDD +H++G+L D PP + QANVQV+V +LN
Sbjct: 133 SDSSGFWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLN 192
Query: 159 LIEPTSQKRMFFV----SKKQEAATVDHSVKISSSKKDG--DSALSSWRDLLDNPEQWRD 212
I+P S F+ S+K+E+ + +K+D D A SW L++NP++W D
Sbjct: 193 FIQPMSPSPSPFMVMSSSEKEESGIKKQPAR---AKQDIVIDEASDSWNHLIENPKEWWD 249
Query: 213 YRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNY 272
+R +K+ GLVKPR+PDFK KD + LWLN AP+WVL +LEG+ FD P K+
Sbjct: 250 HRENKVNGLVKPRHPDFKSKDSSFSLWLNKAPNWVLPKLEGLEFDVLVP-------KARV 302
Query: 273 VKKSKVDDLWKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPV 332
VK+ K ++ WKDLV+NPDKWWDNR+DK++ K PDFKHKETG+ LWLN SP WV +LPPV
Sbjct: 303 VKQLKGEESWKDLVQNPDKWWDNRIDKRNAKAPDFKHKETGEALWLNESPTWVLPKLPPV 362
Query: 333 K 333
K
Sbjct: 363 K 363
>sp|Q9FYJ2|OSB4_ARATH Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2
SV=1
Length = 360
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 184/304 (60%), Gaps = 39/304 (12%)
Query: 56 WPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQH---------AASHS 106
WP+P E+P+Q K+ANS++LIG+V PVQF ++ DGK WAGTVI +S +
Sbjct: 59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSN 118
Query: 107 LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQ------------ 151
WIP+LFEGDLAH A+S+LKK+D VHI GQ+ D A QA+VQ
Sbjct: 119 FWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQLFKSFHGSFSHQ 178
Query: 152 VMVHSLNLIEPTSQKRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWR 211
VMV L+ IE + + Q + HS + ++ G + W DL+D P +W
Sbjct: 179 VMVRDLHYIEGSKAMPKVLPTLDQNEGVLKHSASVQRGREFGTNL---WFDLVDKPNEWC 235
Query: 212 DYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSN 271
DYR K G V P++PDFK+KDG+ LWLN+AP +LSEL+ V FD K
Sbjct: 236 DYREMKQNGSVNPKHPDFKKKDGSQALWLNNAPTEILSELKDVKFDIPK----------- 284
Query: 272 YVKKSKV-DDLWKDLVENPDKWWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLP 330
Y K+ K ++ WKDLV+N +KWWDNR+DK++ K PDFKHKETG LWL+ SP+WV +LP
Sbjct: 285 YAKQPKAGEESWKDLVDNMNKWWDNRVDKRTPKSPDFKHKETGVGLWLSDSPSWVLEKLP 344
Query: 331 PVKS 334
P KS
Sbjct: 345 PPKS 348
>sp|Q8GWJ4|OSB3_ARATH Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=OSB3 PE=2 SV=1
Length = 440
Score = 247 bits (631), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/282 (47%), Positives = 182/282 (64%), Gaps = 14/282 (4%)
Query: 59 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGD 116
P +I ++ +++N +NLIG V+ PVQF SDGK WAGTVI Q + S S WIPI+FEGD
Sbjct: 71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGD 130
Query: 117 LAHIASSHLKKDDHVHIAGQLTAD--PPAIE-GQANVQVMVHSLNLIEPTSQKRMFFVSK 173
LA IA H+KK+D +H++G+L D PP + Q+NVQVMV +LN ++ +
Sbjct: 131 LAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFVQAATSTTKTISPP 190
Query: 174 KQEAATVDHSVKISSSKKDGDSALS-SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRK 232
++E ++ S K D S SW+ L++NP++W D+R +K GLVKP +PDFK K
Sbjct: 191 EKEVTSIKKKPARSKKVKVIDEETSNSWKHLIENPKEWLDHRGNKANGLVKPGHPDFKMK 250
Query: 233 DGTLPLWLNSAPDWVLSELEGVVFDKSKPVLDDQTRKSNY-VKKSKVDDLWKDLVENPDK 291
G L LWL++APDW L +LE + FD P K N + + K ++ WKDLV+NPDK
Sbjct: 251 VGGLSLWLSTAPDWALLKLEELKFDVLVP-------KGNIKLNQLKGEESWKDLVQNPDK 303
Query: 292 WWDNRLDKKSEKGPDFKHKETGKPLWLNYSPAWVTSQLPPVK 333
W DNR DK + K PDFKHKETG+ LW+ SP WV S+LPP+K
Sbjct: 304 WLDNRSDKTNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLK 345
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 97/144 (67%), Gaps = 14/144 (9%)
Query: 199 SWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDK 258
SW+DL+ NP++W D RSDK +YPDFK K+ LW+ ++P WVLS+L + ++
Sbjct: 293 SWKDLVQNPDKWLDNRSDK----TNVKYPDFKHKETGEALWMTNSPIWVLSKLPPLKKNQ 348
Query: 259 SKPV---------LDDQTRKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKKSEKGPDFKH 309
+P LD + K N +K+ K +++WK+LVENP KWWDNRLDK++ KGPDFKH
Sbjct: 349 ERPFMSNKVSQLELDVEVPKGN-LKQLKREEIWKNLVENPSKWWDNRLDKRNPKGPDFKH 407
Query: 310 KETGKPLWLNYSPAWVTSQLPPVK 333
KETG+ LW+ SP W S+LPP+K
Sbjct: 408 KETGEALWIGDSPTWALSKLPPLK 431
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 200 WRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDWVLSELEGVVFDKS 259
W++L++NP +W D R DK P+ PDFK K+ LW+ +P W LS+L + ++
Sbjct: 380 WKNLVENPSKWWDNRLDKRN----PKGPDFKHKETGEALWIGDSPTWALSKLPPLKKNQE 435
Query: 260 KPVL 263
+PV+
Sbjct: 436 RPVM 439
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 262 VLDDQTRKSNYVKKSKVDDLWKDLVENPDKWWDNRLDKKS----EKGPDFKHKETGKPLW 317
V+D++T S WK L+ENP +W D+R +K + PDFK K G LW
Sbjct: 209 VIDEETSNS-----------WKHLIENPKEWLDHRGNKANGLVKPGHPDFKMKVGGLSLW 257
Query: 318 LNYSPAWVTSQLPPVKSTV 336
L+ +P W +L +K V
Sbjct: 258 LSTAPDWALLKLEELKFDV 276
>sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1
SV=1
Length = 261
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 26/233 (11%)
Query: 55 VWPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQH---AASHSLWIPI 111
++ KP + + NSV+L+G VD +Q + + T++ + S I +
Sbjct: 41 LFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISL 100
Query: 112 LFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEG-----QANVQVMVHSLNLIE-PTSQ 165
+A +HLK +DH+ ++G+L + + + QV V +N + P S
Sbjct: 101 RMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSH 160
Query: 166 KRMFFVSKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPR 225
+SK + T D I SKKD + W+ NP W D R +K P+
Sbjct: 161 VLDSQISKNPKTKTED---DIEESKKD---EIYLWQVFFSNPYDWWDNRRNK----KNPK 210
Query: 226 YPDFKRKDGTLPLWLNS-APDWVLSELEGVVFDKSKPVLDDQT----RKSNYV 273
PDFK KD LWL S PDW+ LE +FD+ D++ R S+Y+
Sbjct: 211 QPDFKHKDTGEALWLCSDLPDWITRRLE--LFDQKNRFYDEEKTRRDRLSDYI 261
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 9/77 (11%)
Query: 262 VLDDQ------TRKSNYVKKSKVDD--LWKDLVENPDKWWDNRLDKKSEKGPDFKHKETG 313
VLD Q T+ + +++SK D+ LW+ NP WWDNR +KK+ K PDFKHK+TG
Sbjct: 161 VLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYDWWDNRRNKKNPKQPDFKHKDTG 220
Query: 314 KPLWLNYS-PAWVTSQL 329
+ LWL P W+T +L
Sbjct: 221 EALWLCSDLPDWITRRL 237
>sp|Q5P9Q9|SECA_ANAMM Protein translocase subunit SecA OS=Anaplasma marginale (strain St.
Maries) GN=secA PE=3 SV=2
Length = 872
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 172 SKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKR 231
+++ E+ +D+ ++ S + GD LS + L++ + R + SDK+KG++K KR
Sbjct: 553 TERHESRRIDNQLR-GRSGRQGDPGLSKFFLSLED-DLLRIFGSDKVKGMLKK--LGMKR 608
Query: 232 KDGTLPLWLNSAP---------------------DWVLSELEGVVFDKSKPVLDDQTRKS 270
+ W++ A D V++E VVF++ VLD+ T
Sbjct: 609 GEAIQHKWISKAIERAQKKVEARNYDIRKSLLRFDDVINEQRQVVFEQRNQVLDNDTYDF 668
Query: 271 NYVKKSKVDDLWKDLVENPDKWWD 294
++ S DL +V+ DK++D
Sbjct: 669 AFMYHSVNQDLVSRVVK--DKYYD 690
>sp|B0RDG3|OBG_CLAMS GTPase obg OS=Clavibacter michiganensis subsp. sepedonicus (strain
ATCC 33113 / JCM 9667) GN=obg PE=3 SV=1
Length = 517
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 190 KKDGDSALSSWRDLLDNPEQW---RDYRSDKLKGLVKPRYPDFKRKDGTLPLWLNSAPDW 246
+ DG S +R + PE+W D+R+D+ G + R +DG +
Sbjct: 366 RVDGGSYGDIYRVIGTKPERWVQQTDFRNDEAVGYLADRLAKLGVEDGLFKAGAVAGSSV 425
Query: 247 VLSELEGVVFD 257
V+ E +GVVFD
Sbjct: 426 VIGEGDGVVFD 436
>sp|Q93GP7|SSB2_SALTY Single-stranded DNA-binding protein 2 OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=ssb2 PE=3 SV=1
Length = 172
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQ----------HAASHSLWIPILFEGDLAH 119
N V L+GH+ + + +G A + H+ W ++ G LA
Sbjct: 7 NKVILVGHIGQDPEVRYMPNGGAVANLTLATSETWRVRQDGEMREHTEWHRVVVFGKLAE 66
Query: 120 IASSHLKKDDHVHIAGQL 137
IAS +L+K V+I GQL
Sbjct: 67 IASEYLRKGAQVYIEGQL 84
>sp|Q5HA05|SECA_EHRRW Protein translocase subunit SecA OS=Ehrlichia ruminantium (strain
Welgevonden) GN=secA PE=3 SV=1
Length = 870
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 31/146 (21%)
Query: 172 SKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKR 231
+++ E+ +D+ ++ S + GD LS + L++ + R + SDK+KG++K K+
Sbjct: 552 TERHESRRIDNQLR-GRSGRQGDPGLSKFFLSLED-DLLRIFGSDKIKGMLKK--LGMKK 607
Query: 232 KDGTLPLWLNSAP---------------------DWVLSELEGVVFDKSKPVLDDQTRKS 270
+ W++ A D V++E VVFD+ +LD+ +
Sbjct: 608 GEAIQHTWISRAIEKAQHKVELRNYDIRKSLLKFDNVINEQRKVVFDQRNRILDNDSYNI 667
Query: 271 NYVKKSKVDDLWKDLVENP--DKWWD 294
+ + + D+ D+V N DK+++
Sbjct: 668 SLIYR----DINSDIVNNIIHDKYYN 689
>sp|Q5FGQ3|SECA_EHRRG Protein translocase subunit SecA OS=Ehrlichia ruminantium (strain
Gardel) GN=secA PE=3 SV=1
Length = 870
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 31/146 (21%)
Query: 172 SKKQEAATVDHSVKISSSKKDGDSALSSWRDLLDNPEQWRDYRSDKLKGLVKPRYPDFKR 231
+++ E+ +D+ ++ S + GD LS + L++ + R + SDK+KG++K K+
Sbjct: 552 TERHESRRIDNQLR-GRSGRQGDPGLSKFFLSLED-DLLRIFGSDKIKGMLKK--LGMKK 607
Query: 232 KDGTLPLWLNSAP---------------------DWVLSELEGVVFDKSKPVLDDQTRKS 270
+ W++ A D V++E VVFD+ +LD+ +
Sbjct: 608 GEAIQHTWISRAIEKAQHKVELRNYDIRKSLLKFDNVINEQRKVVFDQRNRILDNDSYNI 667
Query: 271 NYVKKSKVDDLWKDLVENP--DKWWD 294
+ + + D+ D+V N DK+++
Sbjct: 668 SLIYR----DINSDIVNNIIHDKYYN 689
>sp|Q48GG6|CHEB2_PSE14 Chemotaxis response regulator protein-glutamate methylesterase 2
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=cheB2 PE=3 SV=1
Length = 387
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 4 SLRRVMAQIGRSQTTVKRIILYSPAHFTRPFSSRAHQFTKATTKTTTSKDVVWP 57
+L+RV+ Q+ S +I + PA FT+ F+ R + K + K DV+ P
Sbjct: 217 ALQRVLTQLPASFPAPLVLIQHMPAAFTKAFAERLDKLCKISVKEAEDGDVLRP 270
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,454,485
Number of Sequences: 539616
Number of extensions: 5596171
Number of successful extensions: 13870
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 13831
Number of HSP's gapped (non-prelim): 24
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)