Query 019560
Match_columns 339
No_of_seqs 237 out of 1100
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 03:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3koj_A Uncharacterized protein 99.9 8.3E-28 2.8E-32 199.9 12.6 91 68-158 10-107 (108)
2 3vdy_A SSB, single-stranded DN 99.9 1.9E-27 6.6E-32 197.5 14.2 100 67-166 3-112 (116)
3 3ull_A DNA binding protein; DN 99.9 5.1E-27 1.7E-31 199.6 11.0 102 65-166 10-130 (132)
4 2vw9_A Single-stranded DNA bin 99.9 1.3E-26 4.6E-31 198.0 11.8 99 68-166 1-111 (134)
5 3ulp_A Single-strand binding p 99.9 2.6E-26 8.9E-31 193.2 13.3 99 67-165 4-122 (124)
6 1z9f_A Single-strand binding p 99.9 4.1E-26 1.4E-30 199.6 13.3 100 67-166 14-125 (153)
7 1txy_A Primosomal replication 99.9 1.4E-26 4.8E-31 189.8 8.9 94 68-163 1-103 (104)
8 1qvc_A Single stranded DNA bin 99.9 5.5E-26 1.9E-30 196.5 12.8 100 67-166 3-118 (145)
9 3tqy_A Single-stranded DNA-bin 99.9 9.1E-26 3.1E-30 198.1 13.2 102 65-166 4-118 (158)
10 3lgj_A Single-stranded DNA-bin 99.9 2E-25 6.8E-30 198.2 13.9 100 67-166 21-138 (169)
11 1v1q_A Primosomal replication 99.9 7E-26 2.4E-30 194.9 10.1 97 68-165 18-122 (134)
12 4gs3_A Single-stranded DNA-bin 99.9 4.9E-25 1.7E-29 183.3 10.2 91 69-161 11-106 (107)
13 3pgz_A Single-stranded DNA-bin 99.9 7.3E-25 2.5E-29 198.7 11.8 102 65-166 22-141 (193)
14 3afp_A Single-stranded DNA-bin 99.9 1.3E-24 4.5E-29 192.5 11.5 98 68-165 3-118 (168)
15 4dam_A Single-stranded DNA-bin 99.9 1.2E-24 3.9E-29 185.4 10.3 92 67-160 13-118 (128)
16 1eqq_A Single stranded DNA bin 99.9 3.1E-25 1.1E-29 198.3 6.1 99 67-165 4-118 (178)
17 3fhw_A Primosomal replication 99.9 2.5E-24 8.5E-29 180.9 11.1 94 69-166 1-102 (115)
18 3k81_C MP18 RNA editing comple 99.9 2.7E-24 9.3E-29 190.6 11.5 103 62-166 15-136 (164)
19 3k7u_C MP18 RNA editing comple 99.9 4.3E-24 1.5E-28 186.4 11.5 98 67-166 4-120 (148)
20 3k8a_A Putative primosomal rep 99.9 5.3E-24 1.8E-28 175.4 9.9 87 70-161 8-102 (103)
21 2fxq_A Single-strand binding p 99.9 1.7E-23 5.8E-28 195.7 12.9 101 65-166 124-233 (264)
22 3eiv_A Single-stranded DNA-bin 99.9 4.6E-23 1.6E-27 187.7 14.8 95 68-162 3-111 (199)
23 1se8_A Single-strand binding p 99.9 5.5E-23 1.9E-27 196.8 13.5 100 66-165 2-114 (301)
24 2fxq_A Single-strand binding p 99.9 3.5E-23 1.2E-27 193.6 11.2 99 66-164 2-111 (264)
25 1se8_A Single-strand binding p 99.9 2.2E-22 7.5E-27 192.7 12.3 101 65-166 125-237 (301)
26 3en2_A Probable primosomal rep 99.8 8.7E-22 3E-26 162.1 7.6 76 69-145 2-85 (101)
27 4dni_A Fusion protein of RNA-e 99.8 1.1E-20 3.9E-25 177.8 11.1 90 69-161 146-255 (257)
28 4dni_A Fusion protein of RNA-e 99.8 2.9E-19 1E-23 168.2 9.7 91 67-161 28-128 (257)
29 3stb_C RNA-editing complex pro 99.7 1.2E-17 4.1E-22 145.8 10.6 77 67-145 42-125 (148)
30 4dka_C RNA-editing complex pro 97.6 0.00056 1.9E-08 56.4 10.1 76 70-147 4-85 (105)
31 3dm3_A Replication factor A; p 96.2 0.05 1.7E-06 44.1 10.8 81 70-162 15-99 (105)
32 2k50_A Replication factor A re 96.0 0.036 1.2E-06 44.6 9.2 70 70-144 17-90 (115)
33 3e0e_A Replication protein A; 95.9 0.061 2.1E-06 42.7 9.8 78 70-160 12-93 (97)
34 1o7i_A SSB, SSO2364, single st 94.0 0.2 6.8E-06 40.9 7.9 63 69-139 12-78 (119)
35 2k75_A Uncharacterized protein 93.3 0.26 8.9E-06 39.7 7.4 60 69-139 13-75 (106)
36 1ynx_A Replication factor-A pr 93.1 0.17 5.7E-06 41.2 6.0 64 68-135 13-79 (114)
37 2hql_A Hypothetical protein Mg 91.5 2.9 0.0001 33.8 11.2 85 67-157 6-96 (110)
38 3f2b_A DNA-directed DNA polyme 89.6 3.3 0.00011 45.8 13.2 87 67-162 15-103 (1041)
39 4gop_B Putative uncharacterize 86.0 6.1 0.00021 32.6 10.0 87 60-162 27-116 (136)
40 1eov_A ASPRS, aspartyl-tRNA sy 85.0 8.1 0.00028 38.8 12.2 86 70-164 37-131 (487)
41 3kdf_D Replication protein A 3 84.6 5.2 0.00018 32.9 8.9 88 60-163 22-112 (132)
42 2hpi_A DNA polymerase III alph 84.0 1.8 6E-05 48.6 7.3 79 71-161 1044-1122(1220)
43 1jmc_A Protein (replication pr 83.3 2.9 0.0001 37.3 7.3 63 69-135 18-83 (246)
44 4gop_C Putative uncharacterize 78.4 3.2 0.00011 40.7 6.3 64 69-136 13-79 (444)
45 3kf6_A Protein STN1; OB fold, 78.0 19 0.00067 31.0 10.5 87 64-165 42-131 (159)
46 3kf8_A Protein STN1; OB fold; 76.6 10 0.00035 34.8 8.7 106 60-165 76-187 (220)
47 3au7_A TIAS, putative uncharac 75.2 16 0.00055 36.2 10.3 80 65-162 280-361 (402)
48 3m4p_A Ehasnrs, asparaginyl-tR 74.5 11 0.00039 37.5 9.2 87 69-164 30-123 (456)
49 2pi2_A Replication protein A 3 73.6 12 0.0004 34.6 8.4 54 105-164 97-153 (270)
50 3bju_A Lysyl-tRNA synthetase; 72.2 15 0.00051 37.3 9.5 79 71-163 57-141 (521)
51 2xgt_A Asparaginyl-tRNA synthe 72.0 12 0.00042 36.9 8.6 83 70-162 12-96 (435)
52 1wjj_A Hypothetical protein F2 71.3 15 0.00051 31.4 7.9 61 68-136 25-98 (145)
53 3nem_A Aspartyl-tRNA synthetas 71.0 34 0.0011 34.0 11.5 82 70-164 17-102 (438)
54 1wyd_A Hypothetical aspartyl-t 71.0 18 0.00062 35.7 9.6 80 70-163 17-98 (429)
55 1x54_A Asparaginyl-tRNA synthe 70.8 20 0.00068 35.4 9.8 81 70-163 17-101 (434)
56 3i7f_A Aspartyl-tRNA synthetas 69.5 25 0.00085 36.2 10.4 85 70-164 63-154 (548)
57 1n9w_A Aspartyl-tRNA synthetas 68.8 21 0.00072 35.2 9.5 75 69-163 13-88 (422)
58 1jmc_A Protein (replication pr 65.9 12 0.00042 33.1 6.6 67 71-142 140-210 (246)
59 2kbn_A Conserved protein; nucl 63.1 47 0.0016 26.3 9.0 62 69-140 15-77 (109)
60 1c0a_A Aspartyl tRNA synthetas 62.3 31 0.0011 35.4 9.6 84 71-164 17-106 (585)
61 3a74_A Lysyl-tRNA synthetase; 61.9 32 0.0011 34.6 9.4 78 71-163 58-139 (493)
62 1l0w_A Aspartyl-tRNA synthetas 61.8 25 0.00085 36.2 8.7 84 71-164 18-104 (580)
63 2vl6_A SSO MCM N-TER, minichro 56.3 30 0.001 31.5 7.4 52 106-161 210-266 (268)
64 1e1o_A Lysyl-tRNA synthetase, 53.3 89 0.003 31.5 11.0 78 71-163 66-148 (504)
65 4hik_A Protection of telomeres 49.7 13 0.00043 31.9 3.5 27 108-134 66-92 (143)
66 4ex5_A Lysine--tRNA ligase; st 48.3 1E+02 0.0035 31.4 10.6 79 71-164 88-170 (529)
67 4hsp_A Hypothetical protein; P 36.6 37 0.0013 29.4 4.4 85 67-160 51-145 (150)
68 1ltl_A DNA replication initiat 35.9 51 0.0017 30.3 5.6 53 106-163 197-250 (279)
69 1xjv_A Protection of telomeres 34.1 50 0.0017 30.5 5.3 73 69-145 15-87 (294)
70 4gop_C Putative uncharacterize 28.3 1.3E+02 0.0045 29.2 7.4 69 71-144 135-211 (444)
71 4eh1_A Flavohemoprotein; struc 24.6 1.3E+02 0.0046 25.6 6.1 48 95-142 56-110 (243)
72 3ebe_A Protein MCM10 homolog; 24.3 78 0.0027 28.3 4.5 63 71-135 57-119 (200)
73 1gm5_A RECG; helicase, replica 24.1 44 0.0015 35.4 3.3 62 70-139 166-229 (780)
74 3mal_A Stromal cell-derived fa 23.7 15 0.0005 32.8 -0.4 27 305-331 144-172 (199)
75 1t9f_A Protein 1D10; structura 21.6 18 0.00062 31.7 -0.2 26 306-331 133-160 (187)
76 4ah6_A Aspartate--tRNA ligase, 21.4 1.6E+02 0.0054 30.7 6.7 82 70-164 25-114 (617)
No 1
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.95 E-value=8.3e-28 Score=199.94 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=80.4
Q ss_pred cccEEEEEEEeCCCCeEEECCCC-cEEEEEEEEEcC---CCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCC
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDG-KHWAGTVIVQHA---ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA 143 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G-~~Va~fsLAv~r---~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~sye 143 (339)
-||+|+|||||++|||+|+|++| .++|+|+||+++ .++|+||+|++||++||+|++||+|||+|+|+|+|++++|+
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL~~r~y~ 89 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRLRINSLL 89 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEEEEEC--
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEEEeeeEE
Confidence 58999999999999999999998 999999999985 24789999999999999999999999999999999999999
Q ss_pred cC---CeEEEEEEEeeEE
Q 019560 144 IE---GQANVQVMVHSLN 158 (339)
Q Consensus 144 dk---~r~~~eViV~~I~ 158 (339)
++ +++.+||+|++|.
T Consensus 90 ~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 90 KPDGNREKQTELTVTRVH 107 (108)
T ss_dssp ------CCEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEEEEE
Confidence 85 6689999999885
No 2
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=99.95 E-value=1.9e-27 Score=197.52 Aligned_cols=100 Identities=14% Similarity=0.221 Sum_probs=88.2
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeee
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s 139 (339)
.|||+|+|||||++|||+++|++|.++|.|+||+++. .+++||+|++||++||.+++||+||++|+|+|+|++
T Consensus 3 ~mmN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 3 HMFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred ceEeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEEEEEEe
Confidence 5999999999999999999999999999999999862 368999999999999999999999999999999999
Q ss_pred cCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 140 DPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 140 ~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
++|+++ .++.++|+|++|+||++++..
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~~~~ 112 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPKPRE 112 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC-----
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 999975 568899999999999887653
No 3
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=99.94 E-value=5.1e-27 Score=199.64 Aligned_cols=102 Identities=12% Similarity=0.194 Sum_probs=88.5
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------------CCCeeEEEEEec-cHHHHHHhhCCCC
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------------SHSLWIPILFEG-DLAHIASSHLKKD 128 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---------------~~T~wI~VvawG-klAE~~a~yLkKG 128 (339)
++++||+|+||||||+|||+|+|++|.++|.|+||+++. ..++||+|++|| ++||++++||+||
T Consensus 10 m~~~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~l~KG 89 (132)
T 3ull_A 10 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 89 (132)
T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred hhhcCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhhCCCC
Confidence 567899999999999999999999999999999999861 147999999999 5999999999999
Q ss_pred CeEEEEEEeeecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 129 DHVHIAGQLTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 129 D~V~VeGrL~s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
++|+|+|+|++++|+++ .++.++|+|++|.||++++.+
T Consensus 90 ~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~~k~ 130 (132)
T 3ull_A 90 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQTKE 130 (132)
T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC------
T ss_pred CEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999999999999875 457889999999999887654
No 4
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=99.94 E-value=1.3e-26 Score=198.02 Aligned_cols=99 Identities=21% Similarity=0.263 Sum_probs=89.1
Q ss_pred cccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEee
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~ 138 (339)
|||+|+|||||++|||+|+|++|.++|.|+||+++. ++++||+|++||++||.+++||+||++|+|+|+|+
T Consensus 1 mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 1 MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT 80 (134)
T ss_dssp CCCCEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEEEEEEEE
Confidence 799999999999999999999999999999999851 15799999999999999999999999999999999
Q ss_pred ecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 139 s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
+++|+++ .++.++|+|++|+||+++...
T Consensus 81 ~~~~~dkdG~~r~~~ev~a~~i~~l~~~~~~ 111 (134)
T 2vw9_A 81 YESWMDQTGKKNSRHTITADSLQFMDKKSDN 111 (134)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEEECCCC---
T ss_pred eeeEECCCCCEEEEEEEEEEEEEEccCCccc
Confidence 9999875 457789999999999876543
No 5
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=99.94 E-value=2.6e-26 Score=193.17 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=88.2
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEec-cHHHHHHhhCCCCCeEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawG-klAE~~a~yLkKGD~V~VeG 135 (339)
+|||+|+||||||+|||+|+|++|.++|.|+||+++. ++|+||+|++|| ++||.+++||+||++|+|+|
T Consensus 4 ~~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 4 KSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCEEEEEE
Confidence 6899999999999999999999999999999999751 158999999999 99999999999999999999
Q ss_pred EeeecCCCc---C--CeEEEEEEEe----eEEeccCCCc
Q 019560 136 QLTADPPAI---E--GQANVQVMVH----SLNLIEPTSQ 165 (339)
Q Consensus 136 rL~s~syed---k--~r~~~eViV~----~I~FL~~k~~ 165 (339)
+|++++|++ + .++.++|+|+ +|.||++++.
T Consensus 84 ~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~k~~ 122 (124)
T 3ulp_A 84 SLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDDKRN 122 (124)
T ss_dssp EEEEEEECC----CCCEEEEEEEECTTTCEEEECC----
T ss_pred EEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecCcCC
Confidence 999999985 4 6788999998 9999988764
No 6
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=99.93 E-value=4.1e-26 Score=199.62 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=83.1
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-C-------C-CCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEe
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-A-------S-HSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r-~-------~-~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL 137 (339)
-+||+|+||||||+|||+|+|++|+.+|+|+||+++ . . +|+||+|++||++||++++||+||++|+|+|+|
T Consensus 14 ~~~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 14 SFFNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp SCCCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCCEEEEEEEE
Confidence 379999999999999999999999999999999987 3 1 289999999999999999999999999999999
Q ss_pred eecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 138 TADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 138 ~s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
++++|+++ .++.++|+|++|.||+++...
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~~~~~ 125 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDRKPAE 125 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC-----
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccCCCcc
Confidence 99999965 567899999999999877654
No 7
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=99.93 E-value=1.4e-26 Score=189.79 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=79.4
Q ss_pred cccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-CCCCee-------EEEEEeccHHHHHHhhCCCCCeEEEEEEeee
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-ASHSLW-------IPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r-~~~T~w-------I~VvawGklAE~~a~yLkKGD~V~VeGrL~s 139 (339)
|||+|+|||||++|||+|||++|.++|+|+||++. ..+++| |+|++||++||.+++||+||++|+|+|+|++
T Consensus 1 M~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V~G~L~~ 80 (104)
T 1txy_A 1 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 80 (104)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred CcEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEEEEEEEe
Confidence 78999999999999999999999999999999974 345677 9999999999999999999999999999999
Q ss_pred cCCCcC-CeEEEEEEEeeEEeccCC
Q 019560 140 DPPAIE-GQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 140 ~syedk-~r~~~eViV~~I~FL~~k 163 (339)
+ +++ ++..++|+|++|+||+++
T Consensus 81 ~--~~~~G~~r~~v~~~~i~~l~~~ 103 (104)
T 1txy_A 81 H--KAKNGLSKMVLHAEQIELIDSG 103 (104)
T ss_dssp ----------CCEEEEEEEEEC---
T ss_pred c--cCCCCCEEEEEEEEEEEECcCC
Confidence 9 444 555599999999999754
No 8
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=99.93 E-value=5.5e-26 Score=196.55 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=91.5
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
+|||+|+|||||++|||+|+|++|.++|.|+||+++. ++++||+|++||++||.+++||+|||+|+|+|+
T Consensus 3 ~~mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 3 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp CCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred CceEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEEEEEEE
Confidence 6899999999999999999999999999999999861 248999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEE---EEeeEEeccCCCcc
Q 019560 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQK 166 (339)
Q Consensus 137 L~s~syedk---~r~~~eV---iV~~I~FL~~k~~~ 166 (339)
|++++|+++ .++.++| +|++|.||+++...
T Consensus 83 L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~~~~~ 118 (145)
T 1qvc_A 83 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145)
T ss_dssp EEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred EEeeEEECCCCcEEEEEEEeeeEeCEEEEccCCCcC
Confidence 999999976 5577899 99999999877543
No 9
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=99.93 E-value=9.1e-26 Score=198.14 Aligned_cols=102 Identities=18% Similarity=0.318 Sum_probs=89.5
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---C-------CCeeEEEEEeccHHHHHHhhCCCCCeEEEE
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---S-------HSLWIPILFEGDLAHIASSHLKKDDHVHIA 134 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---~-------~T~wI~VvawGklAE~~a~yLkKGD~V~Ve 134 (339)
+.+.||+|+|||||++|||+|+|++|+.||.|+||+++. . +|+||+|++||++||.+++||+||++|+|+
T Consensus 4 Ma~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 4 MARGVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSKIYIE 83 (158)
T ss_dssp CCSCEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCEEEEE
T ss_pred hhcccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCEEEEE
Confidence 456799999999999999999999999999999999751 1 489999999999999999999999999999
Q ss_pred EEeeecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 135 GQLTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 135 GrL~s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
|+|++++|+++ .++.++|+|++|.||+++...
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k~~~ 118 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNRGGG 118 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC-----
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCCccc
Confidence 99999999875 567889999999999887643
No 10
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=99.93 E-value=2e-25 Score=198.23 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=85.3
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEecc-HHHHHHhhCCCCCeEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawGk-lAE~~a~yLkKGD~V~VeG 135 (339)
.|||+|+||||||+|||+|+|++|+.+|+|+||+++. ++|+||+|++||+ +||++++||+||++|+|+|
T Consensus 21 ~~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 21 SMLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCEEEEEE
Confidence 6899999999999999999999999999999999862 2589999999999 9999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEE----eeEEeccCCCcc
Q 019560 136 QLTADPPAIE---GQANVQVMV----HSLNLIEPTSQK 166 (339)
Q Consensus 136 rL~s~syedk---~r~~~eViV----~~I~FL~~k~~~ 166 (339)
+|++++|+++ .++.++|+| ++|.||++++..
T Consensus 101 rL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k~~~ 138 (169)
T 3lgj_A 101 KLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAKKEQ 138 (169)
T ss_dssp EEEEECC--------CEEEEEECTTCCEEEEECC----
T ss_pred EEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCCCcc
Confidence 9999999976 567889998 589999988764
No 11
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=99.93 E-value=7e-26 Score=194.94 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=85.1
Q ss_pred cccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C----CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeee
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A----SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA 139 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r----~----~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s 139 (339)
|+|+|+|||||++|||+|||++|.+||+|+||+++ . +.++||+|++||++||+|.+||+||++|+|+|+|++
T Consensus 18 M~NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~VeGrL~t 97 (134)
T 1v1q_A 18 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISC 97 (134)
T ss_dssp CCEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEEEEEEE
T ss_pred ceeEEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 45999999999999999999999999999999975 1 135799999999999999999999999999999999
Q ss_pred cCCCcCCeEEEEEEEeeEEeccCCCc
Q 019560 140 DPPAIEGQANVQVMVHSLNLIEPTSQ 165 (339)
Q Consensus 140 ~syedk~r~~~eViV~~I~FL~~k~~ 165 (339)
++. .+++..|.++|++|+||+++..
T Consensus 98 r~~-k~G~kr~~~~a~~i~~l~~k~~ 122 (134)
T 1v1q_A 98 HKA-KNGLSKMVLHAEQIELIDSVDK 122 (134)
T ss_dssp ECT-TTTSCEEEEEEEEEEETTSCSC
T ss_pred EEC-CCCCEEEEEEEEEEEECcCCCC
Confidence 852 2366667779999999987654
No 12
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=99.92 E-value=4.9e-25 Score=183.27 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=80.5
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeee-cCCCcC-
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTA-DPPAIE- 145 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s-~syedk- 145 (339)
.|+|+|||||++|||+|+|++|..+++|+|||+|. .++|||+|++|+++||++..| ||++|+|+|+|++ +.|+++
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~--kG~~v~v~G~lrsy~~~~~~d 88 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFEGMNLE--VGTRVKIEGQLRSYNRKSPEE 88 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCC--TTCEEEEEEEEEEEECC----
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhc--CCCEEEEEEEEEecceEECCC
Confidence 39999999999999999999999999999999994 568999999999999998755 9999999999997 788765
Q ss_pred --CeEEEEEEEeeEEecc
Q 019560 146 --GQANVQVMVHSLNLIE 161 (339)
Q Consensus 146 --~r~~~eViV~~I~FL~ 161 (339)
.++.++|+|++|+||+
T Consensus 89 G~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 89 GKNKLILTVFARDISVVP 106 (107)
T ss_dssp ----EEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEEEEEcc
Confidence 6788999999999996
No 13
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=99.92 E-value=7.3e-25 Score=198.74 Aligned_cols=102 Identities=20% Similarity=0.320 Sum_probs=88.1
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEecc-HHHHHHhhCCCCCeEEE
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGD-LAHIASSHLKKDDHVHI 133 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawGk-lAE~~a~yLkKGD~V~V 133 (339)
+.+.||+|+|||||++|||+|+|++|++||+|+||+++. ++|+||+|++||+ +||+|.+||+||++|+|
T Consensus 22 Ma~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~V~V 101 (193)
T 3pgz_A 22 MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSKIYI 101 (193)
T ss_dssp -CCCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCEEEE
T ss_pred HhhhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCEEEE
Confidence 345689999999999999999999999999999999851 1479999999996 99999999999999999
Q ss_pred EEEeeecCCCcC---CeEEEEEEEe----eEEeccCCCcc
Q 019560 134 AGQLTADPPAIE---GQANVQVMVH----SLNLIEPTSQK 166 (339)
Q Consensus 134 eGrL~s~syedk---~r~~~eViV~----~I~FL~~k~~~ 166 (339)
+|+|++++|+++ .++.++|+|+ +|.||+++...
T Consensus 102 eGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 102 EGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGRAAA 141 (193)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC-----
T ss_pred EEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCCCCC
Confidence 999999999875 5678899999 68999988754
No 14
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=99.91 E-value=1.3e-24 Score=192.46 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=87.0
Q ss_pred cccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-----------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
.||+|+|||||++|||+|+|++|+.||+|+||+++. .+++||+|++||++||+|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEE
Confidence 489999999999999999999999999999999741 158999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEEEEe----eEEeccCCCc
Q 019560 137 LTADPPAIE---GQANVQVMVH----SLNLIEPTSQ 165 (339)
Q Consensus 137 L~s~syedk---~r~~~eViV~----~I~FL~~k~~ 165 (339)
|++++|+++ .++.++|+|+ +|.|++.+..
T Consensus 83 L~~~~~~dkdG~~r~~~ev~a~~v~~~l~~l~~~~~ 118 (168)
T 3afp_A 83 LKQRSFETREGEKRTVVEVEVDEIGPSLRYATAKVN 118 (168)
T ss_dssp EEEEEEC-CCSCCEEEEEEEEEEEEECCSSEEEEEE
T ss_pred EEeeeEECCCCcEEEEEEEEEEEeecCEEEeccccc
Confidence 999999975 6788999777 7788865543
No 15
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=99.91 E-value=1.2e-24 Score=185.41 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=83.6
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-----------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-----------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeG 135 (339)
.-+|+|+||||||+|||+|++++| ++|+|+||+++. .+|+||+|++||++||++++||+||++|+|+|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~V~VeG 91 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDPVVVQG 91 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCEEEEEE
Confidence 348999999999999999999999 999999999851 15799999999999999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEeeEEec
Q 019560 136 QLTADPPAIE---GQANVQVMVHSLNLI 160 (339)
Q Consensus 136 rL~s~syedk---~r~~~eViV~~I~FL 160 (339)
+|++++| ++ .++.++|+|++|..-
T Consensus 92 rL~~~~~-dkdG~~r~~~ev~a~~vg~d 118 (128)
T 4dam_A 92 RLKVRTD-VREGQSRTSADIDAVAIGHD 118 (128)
T ss_dssp EEEEEEE-EETTEEEEEEEEEEEEEEEC
T ss_pred EEEEeEE-cCCCCEEEEEEEEEEEEEec
Confidence 9999999 54 567889999998764
No 16
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=99.91 E-value=3.1e-25 Score=198.34 Aligned_cols=99 Identities=20% Similarity=0.321 Sum_probs=88.4
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
++||+|+|||||++|||+|+|++|+.||+|+||+++. ++|+||+|++||++||.|++||+||++|+|+|+
T Consensus 4 ~~~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 4 RGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp CCEEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEEEECCE
T ss_pred cCeeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEEEEEEE
Confidence 5799999999999999999999999999999999851 137999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEE---EEeeEEeccCCCc
Q 019560 137 LTADPPAIE---GQANVQV---MVHSLNLIEPTSQ 165 (339)
Q Consensus 137 L~s~syedk---~r~~~eV---iV~~I~FL~~k~~ 165 (339)
|++++|+++ .++.++| +|++|.||+++..
T Consensus 84 L~~r~~~dkdG~~r~~~eI~v~va~~i~~l~~~~~ 118 (178)
T 1eqq_A 84 LRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQG 118 (178)
T ss_dssp EEEEEEECSSSEEEEEEEEECSSSCCEECSCC---
T ss_pred EEeeeEECCCCCEEEEEEEeeeecCeEEEccccCC
Confidence 999999976 4577899 8999999987644
No 17
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.91 E-value=2.5e-24 Score=180.92 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=83.5
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CC-CeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeec
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SH-SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-------~~-T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~ 140 (339)
||+|+|||||++|||+|||++|.+||+|+||+++. .+ .+||+|++||++||++ +||+||++|+|+|+|+++
T Consensus 1 MNkviL~GrL~~dPelRyTpsG~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~-~~l~kGs~V~VeGrL~tr 79 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLL-ADTPLGTEMQVQGFLAPA 79 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHH-TTCCTTCEEEEEEEEEES
T ss_pred CCEEEEEEEECcCcceEECCCCCEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhh-hccCCCCEEEEEEEEEEC
Confidence 79999999999999999999999999999999751 12 3559999999999998 999999999999999998
Q ss_pred CCCcCCeEEEEEEEeeEEeccCCCcc
Q 019560 141 PPAIEGQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 141 syedk~r~~~eViV~~I~FL~~k~~~ 166 (339)
+- ++ +.++|.|++|+||++..++
T Consensus 80 s~--~G-~kl~l~a~~Ie~l~~~~~~ 102 (115)
T 3fhw_A 80 RK--DS-VKVKLHLQQARRIAGSMGR 102 (115)
T ss_dssp ST--TC-SSEEEEEEEEEECCCSCCC
T ss_pred CC--CC-CEEEEEEEEEEEcCCCCCC
Confidence 62 24 6789999999999887664
No 18
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=99.91 E-value=2.7e-24 Score=190.63 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=83.6
Q ss_pred cccccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-------C---CCCeeEEEEEeccH-HHHHHhhCCCCCe
Q 019560 62 IPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-------A---SHSLWIPILFEGDL-AHIASSHLKKDDH 130 (339)
Q Consensus 62 I~~~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r-------~---~~T~wI~VvawGkl-AE~~a~yLkKGD~ 130 (339)
+.=....||+|+||||||+|||+|+++ .+||+|+||+++ . ++|+||+|++||++ ||+|.+||+||++
T Consensus 15 ~~r~a~smNkViLiGrLg~DPElR~t~--~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL~KGs~ 92 (164)
T 3k81_C 15 FMRCCKSVNSVTLVGVVHDIQSGFVYE--DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNV 92 (164)
T ss_dssp -----CCEEEEEEEEEEECCCCEESSS--CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred hhHHhcCCcEEEEEEEeccCCEEEEcC--ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhcCCCCE
Confidence 333457799999999999999999998 899999999983 1 36899999999999 9999999999999
Q ss_pred EEEEEEeeecCCCcC---CeE-EEEEEEe----eEEeccCCCcc
Q 019560 131 VHIAGQLTADPPAIE---GQA-NVQVMVH----SLNLIEPTSQK 166 (339)
Q Consensus 131 V~VeGrL~s~syedk---~r~-~~eViV~----~I~FL~~k~~~ 166 (339)
|+|+|+|++++|+|+ +++ ...|+|. .|.+|+++...
T Consensus 93 V~VeGrL~tr~w~D~~g~k~~~~~~i~V~~~~g~l~~L~~~r~~ 136 (164)
T 3k81_C 93 VCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 136 (164)
T ss_dssp EEECCEEEEECCCCSSCSCCCCEEEEEECTTTCCEEEECC----
T ss_pred EEEEEEEEeeeEEcCCCCEEEEEEEEEEeCCCCEEEEecCCCCC
Confidence 999999999999987 233 4456666 79999877544
No 19
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=99.90 E-value=4.3e-24 Score=186.39 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=83.7
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC----------CCCeeEEEEEeccH-HHHHHhhCCCCCeEEEEE
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA----------SHSLWIPILFEGDL-AHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~----------~~T~wI~VvawGkl-AE~~a~yLkKGD~V~VeG 135 (339)
..||+|+||||||+||| |++ +|..||+|+||+++. ++|+||+|++||++ ||+|++||+||++|+|+|
T Consensus 4 ~~~NkV~LiGrLg~DPe-r~t-~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 4 KSVNSVTLVGVVHDIQS-GFV-YEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp -CCCCEEEEEEEEEEEE-EES-SSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccCcEEEEEEEeccCCE-eee-CCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCCEEEEEE
Confidence 45899999999999999 999 999999999999851 46899999999997 999999999999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEe-----eEEeccCCCcc
Q 019560 136 QLTADPPAIE---GQANVQVMVH-----SLNLIEPTSQK 166 (339)
Q Consensus 136 rL~s~syedk---~r~~~eViV~-----~I~FL~~k~~~ 166 (339)
+|++++|+++ +++.++|++- .+.+|+++...
T Consensus 82 rL~~r~~~dkdG~kr~~teVi~v~~~~g~~~ll~~~r~~ 120 (148)
T 3k7u_C 82 RLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGDRRT 120 (148)
T ss_dssp EEEECCCSCCC-----CCEEEEECTTTCEEEEEECCC--
T ss_pred EEEeeeeECCCCCEEEEEEEEEEecCCCeEEEccCCCCC
Confidence 9999999876 5667788864 59999877543
No 20
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=99.90 E-value=5.3e-24 Score=175.44 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=77.3
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------CCC-eeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecC
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADP 141 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-------~~T-~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~s 141 (339)
|+|+|||||++|||+|||++|.+||+|+||+++. .++ +||+|++||++|| +.+ |+||++|+|+|+|++++
T Consensus 8 Nkv~LiG~L~~dPelRytp~G~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae-~~~-l~KG~~v~veGrL~~rs 85 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTPAGIPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAE-EWQ-YRQGDCATVEGFLAQKS 85 (103)
T ss_dssp EEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHH-HST-TCTTCEEEEEEEEEESS
T ss_pred cEEEEEEEECCCCceEECCCCCEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhh-hhc-cCCCCEEEEEEEEEECc
Confidence 9999999999999999999999999999999751 133 5599999999999 654 99999999999999999
Q ss_pred CCcCCeEEEEEEEeeEEecc
Q 019560 142 PAIEGQANVQVMVHSLNLIE 161 (339)
Q Consensus 142 yedk~r~~~eViV~~I~FL~ 161 (339)
|. ++ ...+.+++|++++
T Consensus 86 ~~--~~-~lvlhi~~i~~i~ 102 (103)
T 3k8a_A 86 RR--SL-MPMLRIQNIKEYK 102 (103)
T ss_dssp SS--CC-CEEEEEEEEEECC
T ss_pred cC--Cc-cEEEEEEEEEEcC
Confidence 93 33 7889999999984
No 21
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.90 E-value=1.7e-23 Score=195.73 Aligned_cols=101 Identities=17% Similarity=0.198 Sum_probs=88.3
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEee
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLT 138 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~ 138 (339)
+.++||+|+|+|||++|||+|+|++|+++|.|+||+++. ++++||+|++||++||.++ ||+||++|+|+|+|+
T Consensus 124 m~~~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~-~l~KG~~V~V~G~l~ 202 (264)
T 2fxq_A 124 LRRALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWAS-ELRKGDGLLVIGRLV 202 (264)
T ss_dssp -CCCCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHT-TCCTTCEEEEEEEEE
T ss_pred cccceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhh-hcCCCCEEEEEEEEE
Confidence 335799999999999999999999999999999999973 2579999999999999999 999999999999999
Q ss_pred ecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 139 ADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 139 s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
+++|+++ .++.++|+|++|.||+++...
T Consensus 203 ~~~~~~~dG~~~~~~ev~a~~i~~l~~~~~~ 233 (264)
T 2fxq_A 203 NDSWTSSSGERRFQTRVEALRLERPTRGPAQ 233 (264)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEECCCC----
T ss_pred eeEEECCCCCEEEEEEEEEEEEEECcccccc
Confidence 9999875 457789999999999876543
No 22
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=99.90 E-value=4.6e-23 Score=187.67 Aligned_cols=95 Identities=12% Similarity=0.130 Sum_probs=82.2
Q ss_pred cccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC-----C------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 68 VANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA-----A------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r-----~------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
.+|+|+|||||++|||+|+|++|+.||+|+||+++ . .+|+||+|++|+++||+|++||+||++|+|+|+
T Consensus 3 ~~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~V~VeGr 82 (199)
T 3eiv_A 3 GETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMRVIVQGR 82 (199)
T ss_dssp -CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCEEEEEEE
T ss_pred cccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCEEEEEEE
Confidence 37999999999999999999999999999999973 1 268999999999999999999999999999999
Q ss_pred eeecCCCcC---CeEEEEEEEeeEEeccC
Q 019560 137 LTADPPAIE---GQANVQVMVHSLNLIEP 162 (339)
Q Consensus 137 L~s~syedk---~r~~~eViV~~I~FL~~ 162 (339)
|++++|+++ +++.++|+|++|..-=.
T Consensus 83 L~~rswedkdG~kr~~~eVvA~~Ig~dL~ 111 (199)
T 3eiv_A 83 LKQRSYEDREGVKRTVYELDVDEVGASLR 111 (199)
T ss_dssp EEEEC--------CCEEEEEEEEEEEECS
T ss_pred EEeeEEECCCCCEEEEEEEEEEEEecccc
Confidence 999999975 67899999999986433
No 23
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.89 E-value=5.5e-23 Score=196.80 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=89.6
Q ss_pred cccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhh-CCCCCeEEEEE
Q 019560 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSH-LKKDDHVHIAG 135 (339)
Q Consensus 66 ~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---------~~T~wI~VvawGklAE~~a~y-LkKGD~V~VeG 135 (339)
.++||+|+|||||++|||+|+|++|..+|+|+||+++. +.++||+|++||++||++++| |+||++|+|+|
T Consensus 2 a~~mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V~VeG 81 (301)
T 1se8_A 2 ARGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAVVVEG 81 (301)
T ss_dssp -CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEEEEEE
T ss_pred CCceeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEEEEEE
Confidence 45799999999999999999999999999999999751 136999999999999999999 99999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEeeEEeccCCCc
Q 019560 136 QLTADPPAIE---GQANVQVMVHSLNLIEPTSQ 165 (339)
Q Consensus 136 rL~s~syedk---~r~~~eViV~~I~FL~~k~~ 165 (339)
+|++++|+++ .++.++|+|++|+||+.+..
T Consensus 82 ~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~~~ 114 (301)
T 1se8_A 82 TLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPE 114 (301)
T ss_dssp EEEEEEEC-----CEEEEEEEEEEEEECSSCCC
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEeecccc
Confidence 9999999976 56788999999999987753
No 24
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=99.89 E-value=3.5e-23 Score=193.63 Aligned_cols=99 Identities=18% Similarity=0.216 Sum_probs=84.4
Q ss_pred cccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 66 VKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 66 ~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
.++||+|+|+|||++|||+|+|++|.++|+|+||+++. +.++||+|++||++||.+++||+||++|+|+|+
T Consensus 2 ~~~~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~V~G~ 81 (264)
T 2fxq_A 2 ARGLNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIFVEGR 81 (264)
T ss_dssp -CCEEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEEEEEE
T ss_pred CCceeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEEEEEE
Confidence 35799999999999999999999999999999999861 137999999999999999999999999999999
Q ss_pred eeecCCCcC--CeEEEEEEEeeEEeccCCC
Q 019560 137 LTADPPAIE--GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 137 L~s~syedk--~r~~~eViV~~I~FL~~k~ 164 (339)
|++++|+++ .++.++|+|++|.||+++.
T Consensus 82 L~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 82 LEYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEEC---------CCEEEEEEEEEECCCC-
T ss_pred EEeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 999999865 5677899999999998876
No 25
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=99.87 E-value=2.2e-22 Score=192.65 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=87.9
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC---------CCCeeEEEEEeccHHHHHHhhCCCCCeEEEEE
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA---------SHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~---------~~T~wI~VvawGklAE~~a~yLkKGD~V~VeG 135 (339)
+.+|||+|+|+|||++|||+|+|++|+.+|.|+||+++. ++++||+|++||++||.+++ |+||++|+|+|
T Consensus 125 m~~mmN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~-l~KG~~V~V~G 203 (301)
T 1se8_A 125 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKE-LRKGDPVMIMG 203 (301)
T ss_dssp EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTT-CCTTCEEEEEE
T ss_pred hhcceeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHh-cCCCCEEEEEE
Confidence 457899999999999999999999999999999999861 24799999999999999999 99999999999
Q ss_pred EeeecCCCcC---CeEEEEEEEeeEEeccCCCcc
Q 019560 136 QLTADPPAIE---GQANVQVMVHSLNLIEPTSQK 166 (339)
Q Consensus 136 rL~s~syedk---~r~~~eViV~~I~FL~~k~~~ 166 (339)
+|++++|+++ .++.++|+|++|+||+.+...
T Consensus 204 rL~~~~y~dkdG~~r~~~ev~a~~i~~l~~k~~~ 237 (301)
T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALARGAGN 237 (301)
T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC----
T ss_pred EEeeeeEECCCCcEEEEEEEEEEEEEEeccCCCC
Confidence 9999999976 567899999999999876543
No 26
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=99.85 E-value=8.7e-22 Score=162.10 Aligned_cols=76 Identities=13% Similarity=0.174 Sum_probs=66.1
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC----C---CCC-eeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeec
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA----A---SHS-LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD 140 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r----~---~~T-~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~ 140 (339)
||+|+|+|||++|||+|||++|.+||.|+||+++ . .++ +||+|++||++||++++ ++||++|.|+|+|+++
T Consensus 2 MN~v~L~GrLt~dPelRyTpsG~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~-~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTPAGVPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFLARK 80 (101)
T ss_dssp CCCEEEEEEEEEECCCEECTTCCEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTT-SCTTCEEEEEEEEEEC
T ss_pred cCEEEEEEEECcCccEEECCCCCEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhh-cCCCCEEEEEEEEEeC
Confidence 8999999999999999999999999999999985 1 134 45999999999999997 6899999999999999
Q ss_pred CCCcC
Q 019560 141 PPAIE 145 (339)
Q Consensus 141 syedk 145 (339)
+|..+
T Consensus 81 s~~s~ 85 (101)
T 3en2_A 81 HRSSK 85 (101)
T ss_dssp C----
T ss_pred cCCCC
Confidence 99654
No 27
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.83 E-value=1.1e-20 Score=177.77 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=78.4
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC-------C---CCeeEEEEEeccH--HHHHHhhCCCCCeEEEEEE
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA-------S---HSLWIPILFEGDL--AHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~-------~---~T~wI~VvawGkl--AE~~a~yLkKGD~V~VeGr 136 (339)
+|+|+||||| +|||+|+|+ |++||+|+||+++. + +|+||+|++||++ || +++||+||++|+|+|+
T Consensus 146 lNkV~LiGrL-~DPElR~t~-G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE-i~~~L~KG~~V~VeGr 222 (257)
T 4dni_A 146 VNSVTLVGVV-HDIQSGFVY-EDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE-VKQKVKEGNVVCVNGR 222 (257)
T ss_dssp EEEEEEEEEE-EEEEEEEET-TEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH-HHHHCCTTCEEEEEEE
T ss_pred cCEEEEEEEc-CCCEEEEeC-CcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH-HHhhCCCCCEEEEEEE
Confidence 8999999999 999999999 99999999999861 1 5899999999999 99 8889999999999999
Q ss_pred eeecCCCcC---CeEEEE-EEEe----eEEecc
Q 019560 137 LTADPPAIE---GQANVQ-VMVH----SLNLIE 161 (339)
Q Consensus 137 L~s~syedk---~r~~~e-ViV~----~I~FL~ 161 (339)
|++++|+|+ +++.++ |.|+ .|.+|+
T Consensus 223 L~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~ 255 (257)
T 4dni_A 223 LRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIH 255 (257)
T ss_dssp EEEEEEECSSSSCEEEEEEEEECTTTCEEEECC
T ss_pred EEeeeEEcCCCCEEEEEEEEEEECCCCEEEEec
Confidence 999999986 455555 5555 555554
No 28
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=99.78 E-value=2.9e-19 Score=168.18 Aligned_cols=91 Identities=11% Similarity=0.056 Sum_probs=78.5
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-cHHHHHHhhCCCCCeEEEEEEeee
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~------~~T~wI~VvawG-klAE~~a~yLkKGD~V~VeGrL~s 139 (339)
+++|+|+|||||++| |+|||++|. ++.|+||+++. .+++||.|++|| ++||.|.+||+||++|+|+|||++
T Consensus 28 r~~N~viLiGrLtrd-ElRyT~~g~-~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNI-QEGFVFEDK-VLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEE-EEEEETTEE-EEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEece-EEEECCCCC-EEEEEEEEEecCCCCCCCcccEEEEEEECCHHHHHHHHhccCCCEEEEEEEEEE
Confidence 799999999999999 999999984 56666666541 245899999999 999999999999999999999999
Q ss_pred cCCCcC---CeEEEEEEEeeEEecc
Q 019560 140 DPPAIE---GQANVQVMVHSLNLIE 161 (339)
Q Consensus 140 ~syedk---~r~~~eViV~~I~FL~ 161 (339)
|+++ +++.++|+|.++.-++
T Consensus 106 --~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 --VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp --EEEECSSSSSEEEEEEEEECTTT
T ss_pred --eECCCCCcEEEEEEEEEEEEecC
Confidence 6543 7889999999988754
No 29
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=99.73 E-value=1.2e-17 Score=145.82 Aligned_cols=77 Identities=12% Similarity=0.134 Sum_probs=70.6
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC------CCCeeEEEEEec-cHHHHHHhhCCCCCeEEEEEEeee
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA------SHSLWIPILFEG-DLAHIASSHLKKDDHVHIAGQLTA 139 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~------~~T~wI~VvawG-klAE~~a~yLkKGD~V~VeGrL~s 139 (339)
+-+|+|+|+|||+ ||+.+++. +..|+.|+||+++. .+++||+|.+|| ++||.+.+||+||++|+|+|||++
T Consensus 42 r~vN~VvLmGRvt-dpq~ry~~-~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfGg~lAE~i~~ylkkG~rVlVeGRLrm 119 (148)
T 3stb_C 42 RCVNHCVMLGVVQ-NIQEGFVF-EDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSSRVKEQLRDGEWFLVTGRLRM 119 (148)
T ss_dssp SCSEEEEEEEEEE-EEEEEEET-TEEEEEEEEEEECSSCCTTSCSEEEEEEEECSHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eecceEEEEEEec-CccccccC-CCcEEEEEEEEecCCCCCCCCccceEEEEEECChHHHHHHHHhcCCCEEEEEEEEEc
Confidence 6799999999996 99999995 88999999999872 356999999996 999999999999999999999999
Q ss_pred cCCCcC
Q 019560 140 DPPAIE 145 (339)
Q Consensus 140 ~syedk 145 (339)
++|+++
T Consensus 120 n~~~d~ 125 (148)
T 3stb_C 120 VPQYDG 125 (148)
T ss_dssp EEEEET
T ss_pred ceeECC
Confidence 999876
No 30
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=97.55 E-value=0.00056 Score=56.45 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=53.6
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCC--CCCeeEEEEEeccHH--HHHHhhCCCCCeEEEEEEeeec-CCCc
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAA--SHSLWIPILFEGDLA--HIASSHLKKDDHVHIAGQLTAD-PPAI 144 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~--~~T~wI~VvawGklA--E~~a~yLkKGD~V~VeGrL~s~-syed 144 (339)
.++.|+|+|- |++--+. ....|..|+|+++-. -+-++|.|-++|+.+ +.+-+.|+-|+.|.|.|||++. .|+.
T Consensus 4 sn~vlvG~V~-DVQ~Gfl-~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p~~d~ 81 (105)
T 4dka_C 4 SNALMIGRIA-DVQHGFL-GAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNRHVDD 81 (105)
T ss_dssp CEEEEEEEEE-EEEEEEE-TTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCCEECT
T ss_pred cceEEEEEEE-Eeeeccc-ccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeeecccc
Confidence 4789999986 5665444 346788999999753 456999999999987 8889999999999999999995 4544
Q ss_pred C-Ce
Q 019560 145 E-GQ 147 (339)
Q Consensus 145 k-~r 147 (339)
- ++
T Consensus 82 ~~kk 85 (105)
T 4dka_C 82 VSKR 85 (105)
T ss_dssp TTCS
T ss_pred ccce
Confidence 3 44
No 31
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.05 Score=44.14 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=59.3
Q ss_pred cEEEEEEEeCCCCeEEE--CCCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 70 NSVNLIGHVDAPVQFQT--SSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~--T~~G~~--Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
+.|.++|+|..--+++. ..+|.. +..+.|+= +|--|+|++|++.|+. .++.||.|.|.|+.+....-
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D----~TG~IrvtlW~~~a~~---~l~~Gdvv~i~g~vk~~~~g-- 85 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRD----ETGSIRVTLWDNLTDI---DVGRGDYVRVRGYIREGYYG-- 85 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEE----TTEEEEEEEEGGGGGS---CCCTTCEEEEEEEEEECTTS--
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECccccc---ccCCCCEEEEEEEEEEccCC--
Confidence 78999999998776764 357754 55555543 4557999999999986 79999999999988876321
Q ss_pred CeEEEEEEEeeEEeccC
Q 019560 146 GQANVQVMVHSLNLIEP 162 (339)
Q Consensus 146 ~r~~~eViV~~I~FL~~ 162 (339)
.+++.+.+..-|+.
T Consensus 86 ---~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 86 ---GLECTANYVEILKK 99 (105)
T ss_dssp ---SEEEEEEEEEEEEC
T ss_pred ---CEEEEeCCceEEEe
Confidence 25666666555543
No 32
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.04 E-value=0.036 Score=44.59 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=53.8
Q ss_pred cEEEEEEEeCCCCeEE--ECCCC--cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCc
Q 019560 70 NSVNLIGHVDAPVQFQ--TSSDG--KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAI 144 (339)
Q Consensus 70 N~V~LIGrLgkDPElr--~T~~G--~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syed 144 (339)
..|.++|.|..--+++ .+.+| ..++.++|+= +|--|++++|++.|+.. ..|+.|+.|+|.|......|.+
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D----~TG~I~~t~w~~~~~~~-~~l~~G~vv~i~g~~v~~~f~g 90 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIAD----DTGELRAVFWTENIKLL-KKFREGDVIRIKDVNIRGGFGG 90 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEE----TTEEEEEEEETTGGGGG-GTCCTTSEEEEEEEEECCCSSS
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEe----CCCeEEEEEeCchhhhh-hcCCCCCEEEEEeeEEccccCC
Confidence 4679999998754666 46677 6777777764 45689999999998754 6799999999999885555643
No 33
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.91 E-value=0.061 Score=42.73 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=55.1
Q ss_pred cEEEEEEEeCCCCeEEE--CCCCc--EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 70 NSVNLIGHVDAPVQFQT--SSDGK--HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~--T~~G~--~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
+.|.++|+|..--+++. ..+|. .+..+.|+= +|--|++++|++.|+. .++.||.|.|.|+.+.. +
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~D----eTG~I~~tlW~~~~~~---~i~~Gdvv~i~g~v~~~-~--- 80 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKD----DTGSIRGTLWNELADF---EVKKGDIAEVSGYVKQG-Y--- 80 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEE----TTEEEEEEEEGGGGGC---CCCTTCEEEEEEEEEEC-----
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEEC----CCCcEEEEEECCcccc---ccCCCCEEEEEEEEEEc-C---
Confidence 68999999987666655 34674 466666653 5779999999999976 69999999999987543 1
Q ss_pred CeEEEEEEEeeEEec
Q 019560 146 GQANVQVMVHSLNLI 160 (339)
Q Consensus 146 ~r~~~eViV~~I~FL 160 (339)
..+++.+.+..-|
T Consensus 81 --~~~el~~g~~~~i 93 (97)
T 3e0e_A 81 --SGLEISVDNIGII 93 (97)
T ss_dssp ---CEEEEEEEEEEE
T ss_pred --CeEEEEECCCcEE
Confidence 1467777665544
No 34
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.95 E-value=0.2 Score=40.88 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=47.4
Q ss_pred ccEEEEEEEeCCCCeEE--ECCCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEE-EEeee
Q 019560 69 ANSVNLIGHVDAPVQFQ--TSSDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr--~T~~G~-~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~Ve-GrL~s 139 (339)
.+.|.++|.|..--+++ .+.+|. .+..+.|+= +|--|++++|+..|+ .++.|+.|+|. |++..
T Consensus 12 ~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D----~TG~I~~tlW~~~~~----~~~~G~vv~i~~g~v~~ 78 (119)
T 1o7i_A 12 MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGD----ETGRVKLTLWGKHAG----SIKEGQVVKIENAWTTA 78 (119)
T ss_dssp CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEE----TTEEEEEEEEGGGTT----CCCTTCEEEEEEEEEEE
T ss_pred CCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEe----CCCEEEEEEECChhh----cCCCCCEEEEEeEEEEE
Confidence 45688888887654434 567886 676666663 455699999999874 48999999999 87765
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=93.31 E-value=0.26 Score=39.74 Aligned_cols=60 Identities=23% Similarity=0.250 Sum_probs=47.7
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcE--EEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEE-EEeee
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKH--WAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTA 139 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~--Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~Ve-GrL~s 139 (339)
++.|.++|+|-.--+.+.+.+|.. ++...|+= +|--|++++|++. |+.||.|.|. |....
T Consensus 13 ~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~D----eTG~I~~tlW~~~-------l~~Gdvv~i~ng~v~~ 75 (106)
T 2k75_A 13 TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIED----DTARIRISSFGKQ-------LQDSDVVRIDNARVAQ 75 (106)
T ss_dssp CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEC----SSCEEEEEEESSC-------CCTTEEEEEEEEEEEE
T ss_pred CceEEEEEEEEEccccccccCCCeeEEEEEEEEc----CCCeEEEEEEcCc-------cCCCCEEEEEeeEEeE
Confidence 577999999987666666678874 76766663 5667999999987 9999999999 77764
No 36
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.17 Score=41.16 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=50.2
Q ss_pred cccEEEEEEEeCCCCeEEECC--CC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEE
Q 019560 68 VANSVNLIGHVDAPVQFQTSS--DG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr~T~--~G-~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeG 135 (339)
.++.+.+.|||.+--++|... +| ..+..+.|+= ++--|++++|+++|+.....|+.|+.++|+|
T Consensus 13 ~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~D----e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 13 YQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLD----TSGEIRATAFNDFATKFNEILQEGKVYYVSK 79 (114)
T ss_dssp TTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEE----TTEEEEEEECHHHHHHHHHHSCSSSEEEEES
T ss_pred CCCceEEEEEEEEeccceEEecCCCCceEEEEEEEC----CCCeEEEEECHHHHHHHHhhcccCcEEEECC
Confidence 356789999999888876543 33 2455665543 2339999999999999999999999999998
No 37
>2hql_A Hypothetical protein Mg376 homolog; structural genomics, conserved hypothetical protein, GI:1673959, MPN554, OB fold; 2.00A {Mycoplasma pneumoniae}
Probab=91.48 E-value=2.9 Score=33.84 Aligned_cols=85 Identities=21% Similarity=0.141 Sum_probs=58.5
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--CCC--CeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCC
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--ASH--SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r--~~~--T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~sy 142 (339)
.|+|.|.|-|-+..- .-+ ..+.-...+|...| ++. |||+-+-+=|.||-.+.+|.+|=.-|.|+|-|++.
T Consensus 6 gMLN~V~LEG~IeS~---kWS-~kKTGF~VTIkQkR~FGer~FTDyyViYAN~QL~~ELEky~~k~k~isieG~L~TY-- 79 (110)
T 2hql_A 6 GMLNRVFLEGEIESS---CWS-VKKTGFLVTIKQMRFFGERLFTDYYVIYANGQLAYELEKHTKKYKTISIEGILRTY-- 79 (110)
T ss_dssp -CCEEEEEEEEEEEE---EEC-TTCSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHTTCSEEEEEEEEEEE--
T ss_pred ceEEEEEEeeeeehh---ccc-ccCceEEEEEeehhhhccccceeEEEEEECCeeehhHHHhhhhceEEEEeeehhhH--
Confidence 589999999987531 222 22222233455555 333 68999999999999999999999999999999874
Q ss_pred CcC--CeEEEEEEEeeE
Q 019560 143 AIE--GQANVQVMVHSL 157 (339)
Q Consensus 143 edk--~r~~~eViV~~I 157 (339)
.++ +.-.+.|.|..|
T Consensus 80 ~ekkS~iWKTtI~~~KI 96 (110)
T 2hql_A 80 LERKSEIWKTTIEIVKI 96 (110)
T ss_dssp EETTTTEEEEEEEEEEE
T ss_pred HHHhcccceeEEEEEEE
Confidence 333 444556655544
No 38
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=89.61 E-value=3.3 Score=45.77 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=66.3
Q ss_pred ccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhCCCCCeEEEEEEeeecCCCc
Q 019560 67 KVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAI 144 (339)
Q Consensus 67 ~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~--~a~yLkKGD~V~VeGrL~s~syed 144 (339)
.-.+.|++.|.|-. .|.|.+.+|+.+..|.|. +.|+-|.|..|-+-.+. +.+.+++|+-|.|.|.++.++|..
T Consensus 15 ~~~~~~~~~g~v~~-~~~~~~~~~~~~~~~~~t----d~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~ 89 (1041)
T 3f2b_A 15 EEERRVVVQGYVFD-AEVSELKSGRTLLTMKIT----DYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVR 89 (1041)
T ss_dssp SCEEEEEEEEEEEE-EEEEECTTSCEEEEEEEE----CSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTT
T ss_pred cccceEEEEEEEEE-EEEEEccCCCEEEEEEEE----eCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCc
Confidence 45688999999885 899999999988777664 24777999888665443 456799999999999999999975
Q ss_pred CCeEEEEEEEeeEEeccC
Q 019560 145 EGQANVQVMVHSLNLIEP 162 (339)
Q Consensus 145 k~r~~~eViV~~I~FL~~ 162 (339)
+ +.+.+.+|.-+..
T Consensus 90 ~----~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 90 D----LVIIANDLNEIAA 103 (1041)
T ss_dssp E----EEEEEEEEEEECC
T ss_pred c----eEEEeeeeEEecc
Confidence 3 2355555655553
No 39
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=86.00 E-value=6.1 Score=32.64 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=56.4
Q ss_pred CccccccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH---HHhhCCCCCeEEEEEE
Q 019560 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI---ASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 60 ~~I~~~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~---~a~yLkKGD~V~VeGr 136 (339)
..+...-.-++.|.|+|.|.. .+ .+.....|+|. . .|--|.|..|....+. -...+..|+.|.|.|+
T Consensus 27 ~~f~i~g~~i~~V~iVG~V~~-~~-----~~~~~~~~~ld--D--~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~ 96 (136)
T 4gop_B 27 AEFILDGAELGQLTFVAVVRN-IS-----RNATNVAYSVE--D--GTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGT 96 (136)
T ss_dssp CCCBSSSSBCCEEEEEEEEEE-EE-----ECSSEEEEEEE--C--SSCEEEEEEECC--------CCSCCTTCEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE-EE-----ecCCeEEEEEE--C--CCCCEEEEEecccCCcccccccccCCCCEEEEEEE
Confidence 345555567999999999874 22 23334444443 2 4557999999876643 3567999999999999
Q ss_pred eeecCCCcCCeEEEEEEEeeEEeccC
Q 019560 137 LTADPPAIEGQANVQVMVHSLNLIEP 162 (339)
Q Consensus 137 L~s~syedk~r~~~eViV~~I~FL~~ 162 (339)
|+.- .+ ..+|.+..|..++.
T Consensus 97 v~~f--~g----~~qi~~~~ir~v~d 116 (136)
T 4gop_B 97 LKSF--QN----RRSISSGHMRPVID 116 (136)
T ss_dssp EEEE--TT----EEEEEESEEEECSS
T ss_pred EEEe--CC----EEEEEEEEEEECCC
Confidence 9873 22 24677777777644
No 40
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=85.04 E-value=8.1 Score=38.85 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=58.0
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc----HH---HHHHhhCCCCCeEEEEEEeeecCC
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD----LA---HIASSHLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGk----lA---E~~a~yLkKGD~V~VeGrL~s~sy 142 (339)
..|.|.|+|.+ +|. .|+.++.+.|- + .+..|+|++-.+ +. ...++.|..||.|.|+|.+....-
T Consensus 37 ~~V~v~GwV~~---~R~--~g~~l~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~ 107 (487)
T 1eov_A 37 KEVLFRARVHN---TRQ--QGATLAFLTLR-Q---QASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDE 107 (487)
T ss_dssp CEEEEEEEEEE---EEE--CSSSEEEEEEE-E---TTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSS
T ss_pred CEEEEEEEEEE---eec--cCCccEEEEEE-E---CCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 46999999974 444 35543444443 2 345789888543 22 234567999999999999987643
Q ss_pred CcC--CeEEEEEEEeeEEeccCCC
Q 019560 143 AIE--GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 143 edk--~r~~~eViV~~I~FL~~k~ 164 (339)
... ..-.++|.|++|..|.+..
T Consensus 108 ~~~~~~~g~~El~~~~i~vl~~a~ 131 (487)
T 1eov_A 108 PIKSATVQNLEIHITKIYTISETP 131 (487)
T ss_dssp CCTTSSEEEEEEEEEEEEEEECCC
T ss_pred CCcCCCCCcEEEEEEEEEEeeccc
Confidence 222 3357999999999998654
No 41
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=84.60 E-value=5.2 Score=32.88 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=54.4
Q ss_pred CccccccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHH--HHhhCCCCCeEEEEEE
Q 019560 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 60 ~~I~~~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~-wI~VvawGklAE~--~a~yLkKGD~V~VeGr 136 (339)
..+...-.-++.|.|+|.|.. .+ .+.....++|. +.|- -|.|..|.+..+. ....+..|+-|.|.|+
T Consensus 22 ~~f~i~g~~i~~V~iVG~V~~-~~-----~~~~~~~~~ld----D~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~ 91 (132)
T 3kdf_D 22 EVFRIGNVEISQVTIVGIIRH-AE-----KAPTNIVYKID----DMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGH 91 (132)
T ss_dssp SCEEETTEECCEEEEEEEEEE-EE-----ECSSEEEEEEE----CSSSSCEEEEEEC---------CCCCTTCEEEEEEE
T ss_pred CcEEECCEEEEEEEEEEEEEE-EE-----EcCCeEEEEEE----CCCCCEEEEEEEccCCCcccccccccCCCEEEEEEE
Confidence 344445566899999999874 12 12233344443 2455 7999999876533 3567999999999999
Q ss_pred eeecCCCcCCeEEEEEEEeeEEeccCC
Q 019560 137 LTADPPAIEGQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 137 L~s~syedk~r~~~eViV~~I~FL~~k 163 (339)
|+.- .+ ..+|.+..|..++..
T Consensus 92 l~~f--~g----~~qi~~~~ir~v~d~ 112 (132)
T 3kdf_D 92 LRSF--QN----KKSLVAFKIMPLEDM 112 (132)
T ss_dssp EEEE--TT----EEEEEEEEEEECSST
T ss_pred EEeE--CC----EEEEEEEEEEEcCCc
Confidence 9973 22 245777777776544
No 42
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=83.97 E-value=1.8 Score=48.60 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=40.5
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCcCCeEEE
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIEGQANV 150 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syedk~r~~~ 150 (339)
.|.+.|-|.. .+.+.|.+|..++.++|.- .|--+.|++|.+.-+.....|..|..|.|.|+++.+. .+
T Consensus 1044 ~v~v~G~v~~-~~~~~Tk~G~~maf~tleD----~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v~~~~-------~~ 1111 (1220)
T 2hpi_A 1044 KVLLSGMVEE-VVRKPTRSGGMMARFTLSD----ETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVEKGE-------EL 1111 (1220)
T ss_dssp EEEEEEEECC-C------------CEEEEE----TTEEEEEC-------------CTTCEEEEEEEEC------------
T ss_pred eEEEEEEEEE-EEEeecCCCCeEEEEEEEE----CCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEEEECC-------Cc
Confidence 4778888774 6777888999999888874 4666999999999999999999999999999998542 36
Q ss_pred EEEEeeEEecc
Q 019560 151 QVMVHSLNLIE 161 (339)
Q Consensus 151 eViV~~I~FL~ 161 (339)
+|+|++|.-++
T Consensus 1112 ~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1112 RVLAQAVWTLE 1122 (1220)
T ss_dssp CEEEEEEEEHH
T ss_pred EEEEeeeecHH
Confidence 89999987664
No 43
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=83.30 E-value=2.9 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=47.5
Q ss_pred ccEEEEEEEeCCCCeEEEC--CCC-cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEE
Q 019560 69 ANSVNLIGHVDAPVQFQTS--SDG-KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T--~~G-~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeG 135 (339)
++.+.|.|||.+--++|.. ++| ..+..+.|+ +. .. -|++++|+++|+.....|+.|+.++|++
T Consensus 18 ~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~-De--~G-~I~at~~~~~~~~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 18 QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV-DE--SG-EIRATAFNEQVDKFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE-CS--SC-EEEEEEEHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCceEEEEEEEEecccceeeCCCCCceEEEEEEE-CC--CC-eEEEEEChHHHHHhhhhcccCCEEEECC
Confidence 5678899999987776643 233 234455444 21 23 8999999999999999999999999999
No 44
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=78.40 E-value=3.2 Score=40.73 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=48.5
Q ss_pred ccEEEEEEEeCCCCeEEEC--CCCc-EEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEE
Q 019560 69 ANSVNLIGHVDAPVQFQTS--SDGK-HWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQ 136 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T--~~G~-~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGr 136 (339)
++.+.|.|||..--++|.. ++|. .+..+.|+ + ++--|++++|+++|+.....|+.|+.++|++-
T Consensus 13 ~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~-D---e~G~I~at~~~~~~~~f~~~l~eG~vy~Is~~ 79 (444)
T 4gop_C 13 QNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLL-D---DSGEIKATGFNDAVDRFYPLLQENHVYLISKA 79 (444)
T ss_dssp CCSCEEEEECCEECCCEEEECSSCEEEEEEEEEE-C---SSCEEEEEEETHHHHHHTTTCCTTCEEEEESC
T ss_pred CcceEEEEEEEEccCcceecCCCCCceEEEEEEE-c---CCCEEEEEEeHHHHHHHHHheecCCEEEEcCC
Confidence 4678999999976666643 2332 45555554 2 23389999999999999999999999999983
No 45
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=78.00 E-value=19 Score=31.04 Aligned_cols=87 Identities=10% Similarity=0.177 Sum_probs=58.1
Q ss_pred cccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-H--HHHHhhCCCCCeEEEEEEeeec
Q 019560 64 FQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A--HIASSHLKKDDHVHIAGQLTAD 140 (339)
Q Consensus 64 ~~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGkl-A--E~~a~yLkKGD~V~VeGrL~s~ 140 (339)
|...-++.|.|+|.|.. .+-+ .+ +....+++.. ..-|.|++|-+. + ......+.-|+.|.|.|+|++-
T Consensus 42 ~~n~PI~~V~IvGiVv~-~~~~----~~---~~~ytIDD~T-G~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~f 112 (159)
T 3kf6_A 42 WMGFPIRWIQIVGYIAA-IDIY----EG---KHVLTVDDCS-GMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSF 112 (159)
T ss_dssp ETTEEECEEEEEEEEEE-EEEE----TT---EEEEEEECSS-SCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECS
T ss_pred ECCeEEEEEEEEEEEEE-EEEe----CC---EEEEEEecCC-CCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEee
Confidence 44455899999999986 2211 12 2344555422 237999999876 2 2334458999999999999874
Q ss_pred CCCcCCeEEEEEEEeeEEeccCCCc
Q 019560 141 PPAIEGQANVQVMVHSLNLIEPTSQ 165 (339)
Q Consensus 141 syedk~r~~~eViV~~I~FL~~k~~ 165 (339)
.-+ -+|.|+.|..++....
T Consensus 113 r~~------rqI~~~~i~~v~d~n~ 131 (159)
T 3kf6_A 113 RSE------VELIAQSFEELRDPND 131 (159)
T ss_dssp SSS------CEEEEEEEEEECSTHH
T ss_pred CCE------EEEEEEEEEECCCcHH
Confidence 222 3888888888875443
No 46
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=76.56 E-value=10 Score=34.76 Aligned_cols=106 Identities=8% Similarity=0.071 Sum_probs=66.7
Q ss_pred CccccccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCC-CCeeEEEEEeccHHHHHHhh---CCCCCeEEEEE
Q 019560 60 SEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAAS-HSLWIPILFEGDLAHIASSH---LKKDDHVHIAG 135 (339)
Q Consensus 60 ~~I~~~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~-~T~wI~VvawGklAE~~a~y---LkKGD~V~VeG 135 (339)
.-+-|...-+|.|.++|.|..--+.-....|.-..+..+.++... ....|.|.+--..+-.+.-- .--|..|.|.|
T Consensus 76 ~i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG 155 (220)
T 3kf8_A 76 HVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEG 155 (220)
T ss_dssp TCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEE
T ss_pred cEEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEE
Confidence 345566667999999999987433322223444455667777633 24577776654433222111 23599999999
Q ss_pred Eeeec--CCCcCCeEEEEEEEeeEEeccCCCc
Q 019560 136 QLTAD--PPAIEGQANVQVMVHSLNLIEPTSQ 165 (339)
Q Consensus 136 rL~s~--syedk~r~~~eViV~~I~FL~~k~~ 165 (339)
.+.+. .+...+...-||.|+.|.+|+..+.
T Consensus 156 ~i~~~r~~~~~~~~~~rei~ve~i~vl~~~~~ 187 (220)
T 3kf8_A 156 EIYNWYDSINVSKKPDRELKVSKITVLSHRPD 187 (220)
T ss_dssp EEEECCCSTTTTSCCCEEEEEEEEEEEESSSC
T ss_pred EEEeeccccccccccceEEEEEEEEEeccCCC
Confidence 99974 2333344445999999999987643
No 47
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=75.23 E-value=16 Score=36.24 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=59.6
Q ss_pred ccccccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec--cHHHHHHhhCCCCCeEEEEEEeeecCC
Q 019560 65 QVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG--DLAHIASSHLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 65 ~~~l~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawG--klAE~~a~yLkKGD~V~VeGrL~s~sy 142 (339)
..+.+-++.+.|.|...|.. ..+|..+ |+|-- ++.-|+|++|. +-...+...|..||.|.|-|.+...
T Consensus 280 ~~~~~~~~~v~G~V~~~P~~--~~GGHV~--f~l~d----~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~g-- 349 (402)
T 3au7_A 280 RLENYRSYRLRGRVTLEPYD--IEGGHVF--FEIDT----KFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKKD-- 349 (402)
T ss_dssp SCCTTCEEEEEEEEEEEEEE--ETTTEEE--EEEEE----TTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEETT--
T ss_pred ccccCceEEEEEEEecCcEe--ccCceEE--EEEEc----CCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecCC--
Confidence 34578889999999976665 3466644 55554 36679999999 5466677889999999999997752
Q ss_pred CcCCeEEEEEEEeeEEeccC
Q 019560 143 AIEGQANVQVMVHSLNLIEP 162 (339)
Q Consensus 143 edk~r~~~eViV~~I~FL~~ 162 (339)
.|.++.+..+.-
T Consensus 350 --------tLnvEk~~v~~l 361 (402)
T 3au7_A 350 --------TINLEKIQIVEL 361 (402)
T ss_dssp --------EEEEEEEEEEEC
T ss_pred --------EEEEEEEEEccc
Confidence 677777777644
No 48
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=74.49 E-value=11 Score=37.51 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=55.7
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEec-cHHH-HHHhhCCCCCeEEEEEEeeecCCCcCC
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEG-DLAH-IASSHLKKDDHVHIAGQLTADPPAIEG 146 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawG-klAE-~~a~yLkKGD~V~VeGrL~s~syedk~ 146 (339)
-..|.|.|+|-. +|. .|+.++.+.|- + .+..|+|++-. ++.+ ..+..|..||.|.|+|.+....-....
T Consensus 30 g~~V~v~Gwv~~---~R~--~Gk~~~Fi~Lr-D---~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~ 100 (456)
T 3m4p_A 30 GKLVTFKGWAYH---IRK--ARKTLIFVELR-D---GSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHP 100 (456)
T ss_dssp SSEEEEEEEEEE---EEC--CSSSEEEEEEE-C---SSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCC
T ss_pred CCEEEEEEEEEE---Eec--CCCceEEEEEE-e---CCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccC
Confidence 347899999974 333 34434444332 2 23468998876 3322 123479999999999999865321111
Q ss_pred e-----EEEEEEEeeEEeccCCC
Q 019560 147 Q-----ANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 147 r-----~~~eViV~~I~FL~~k~ 164 (339)
. -.++|.|++|..|....
T Consensus 101 ~~~~t~g~~El~~~~i~vl~~a~ 123 (456)
T 3m4p_A 101 PEIADILNLEMQVTEWKVIGESP 123 (456)
T ss_dssp CSCTTBCSSEEEEEEEEEEECCC
T ss_pred cccCCCCcEEEEEeEEEEEecCC
Confidence 1 34799999999997654
No 49
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=73.63 E-value=12 Score=34.57 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCe-eEEEEEeccHHHH--HHhhCCCCCeEEEEEEeeecCCCcCCeEEEEEEEeeEEeccCCC
Q 019560 105 HSL-WIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPAIEGQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 105 ~T~-wI~VvawGklAE~--~a~yLkKGD~V~VeGrL~s~syedk~r~~~eViV~~I~FL~~k~ 164 (339)
.|- -|.|.+|....+. ....++.|+.|.|.|+|+.-. + ..+|.+..|..++..+
T Consensus 97 ~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~--g----~~qi~i~~ir~v~d~n 153 (270)
T 2pi2_A 97 MTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQ--N----KKSLVAFKIMPLEDMN 153 (270)
T ss_dssp SSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEET--T----EEEEEEEEEEECSCTH
T ss_pred CCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecC--C----eeEEEEEEEEecCCHh
Confidence 455 7999999876432 345699999999999999642 2 2467777777776544
No 50
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=72.21 E-value=15 Score=37.34 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHH---H---HHHhhCCCCCeEEEEEEeeecCCCc
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA---H---IASSHLKKDDHVHIAGQLTADPPAI 144 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklA---E---~~a~yLkKGD~V~VeGrL~s~syed 144 (339)
.|.|.|+|-. +|.. |+.++.+.|- + .+..|+|++-.+.. + .+.+.|..||.|.|+|.+....
T Consensus 57 ~V~v~Grv~~---~R~~--gkk~~F~~Lr-D---~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~--- 124 (521)
T 3bju_A 57 TLKVAGRIHA---KRAS--GGKLIFYDLR-G---EGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK--- 124 (521)
T ss_dssp CEEEEEEEEE---EEES--SSSEEEEEEE-E---TTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT---
T ss_pred EEEEEEEEEE---EecC--CCCcEEEEEE-E---CCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC---
Confidence 5999999974 4543 5334444443 2 24679998865421 2 2345799999999999998763
Q ss_pred CCeEEEEEEEeeEEeccCC
Q 019560 145 EGQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 145 k~r~~~eViV~~I~FL~~k 163 (339)
.+ .++|.|++|.+|++.
T Consensus 125 ~g--e~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 125 KG--ELSIIPYEITLLSPC 141 (521)
T ss_dssp TC--CEEEEEEEEEEEECC
T ss_pred CC--CEEEEEeEEEEeecC
Confidence 12 489999999999765
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=72.00 E-value=12 Score=36.89 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=53.0
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH-HHhhCCCCCeEEEEEEeeecCCCcC-Ce
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI-ASSHLKKDDHVHIAGQLTADPPAIE-GQ 147 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~-~a~yLkKGD~V~VeGrL~s~syedk-~r 147 (339)
..|.|.|+|.+ +|.. |+.++.+.|- + .+..++|++-.++.+. ....|..||.|.|+|.+..+. ... ..
T Consensus 12 ~~V~v~Gwv~~---~R~~--Gk~~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~-~~~~~~ 81 (435)
T 2xgt_A 12 ERVCIKGWIHR---MRRQ--GKSLMFFILR-D---GTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVP-EGKEAP 81 (435)
T ss_dssp SEEEEEEEEEE---EEEC--TTSEEEEEEE-C---SSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC-------
T ss_pred CEEEEEEEEEE---eccc--CCCcEEEEEE-E---CCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecC-CCcCCC
Confidence 36999999974 4443 4334444333 2 3446999886554321 112699999999999998742 111 12
Q ss_pred EEEEEEEeeEEeccC
Q 019560 148 ANVQVMVHSLNLIEP 162 (339)
Q Consensus 148 ~~~eViV~~I~FL~~ 162 (339)
-.++|.|+++..|..
T Consensus 82 g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 82 NGHELIADFWKIIGN 96 (435)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEeec
Confidence 248999999999985
No 52
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=71.33 E-value=15 Score=31.44 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=43.9
Q ss_pred cccEEEEEEEeCCCCeEE---EC--CCC--------cEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEE
Q 019560 68 VANSVNLIGHVDAPVQFQ---TS--SDG--------KHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA 134 (339)
Q Consensus 68 l~N~V~LIGrLgkDPElr---~T--~~G--------~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~Ve 134 (339)
.++.|+|+|+|-.--+.+ .+ .+| ..|+...|| ++|--|++++|++.|+. |+.||.|.|.
T Consensus 25 g~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVg----DeTG~I~ftlW~e~~~~----l~~Gd~v~i~ 96 (145)
T 1wjj_A 25 GTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIG----DETGCILFTARNDQVDL----MKPGATVILR 96 (145)
T ss_dssp TCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEE----CSSCEEEEEECTTHHHH----TCTTCEEEEE
T ss_pred CCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEE----cCCcEEEEEEecCCcCc----CCCCCEEEEe
Confidence 467799999987644433 22 134 257776666 36888999999998764 7899999998
Q ss_pred EE
Q 019560 135 GQ 136 (339)
Q Consensus 135 Gr 136 (339)
+-
T Consensus 97 na 98 (145)
T 1wjj_A 97 NS 98 (145)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 53
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=70.98 E-value=34 Score=33.96 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=55.2
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH--HH--HHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL--AH--IASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGkl--AE--~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
..|.|.|+|.. +|.. |+ ++.+.|- + .+..+.|++-.+. .+ ..++.|..||.|.|+|.+....-
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~--- 83 (438)
T 3nem_A 17 QKVKVAGWVWE---VKDL--GG-IKFLWIR-D---RDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPK--- 83 (438)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---
Confidence 46899999974 4443 44 4443333 2 2456999887653 11 23567999999999999987531
Q ss_pred CeEEEEEEEeeEEeccCCC
Q 019560 146 GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 146 ~r~~~eViV~~I~FL~~k~ 164 (339)
....++|.|++|..|....
T Consensus 84 ~~~~~el~~~~i~vl~~~~ 102 (438)
T 3nem_A 84 AKLGFEILPEKIVVLNRAE 102 (438)
T ss_dssp STTSEEEEEEEEEEEECBC
T ss_pred CCCcEEEEEEEEEEEecCC
Confidence 1124899999999997653
No 54
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=70.98 E-value=18 Score=35.71 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=54.6
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--HHHHHHhhCCCCCeEEEEEEeeecCCCcCCe
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--LAHIASSHLKKDDHVHIAGQLTADPPAIEGQ 147 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGk--lAE~~a~yLkKGD~V~VeGrL~s~syedk~r 147 (339)
..|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+ ..+. ++.|..||.|.|+|.+....- +.
T Consensus 17 ~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~~~~~~~~-~~~l~~~~~v~v~G~v~~~~~---~~ 82 (429)
T 1wyd_A 17 KEVIWAGWVHL---LRDL--GG-KKFIILR-D---KTGLGQVVVDKNSSAFGI-SQELTQESVIQVRGIVKADKR---AP 82 (429)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEEE-E---TTEEEEEEECTTSTTHHH-HTTCCTTCEEEEEEEEEECSS---SG
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChHHHHH-HHhCCCCCEEEEEEEEEecCC---CC
Confidence 46999999974 4443 55 4433332 3 355689888543 2222 367999999999999987631 22
Q ss_pred EEEEEEEeeEEeccCC
Q 019560 148 ANVQVMVHSLNLIEPT 163 (339)
Q Consensus 148 ~~~eViV~~I~FL~~k 163 (339)
..++|.|+++..|.+.
T Consensus 83 ~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 83 RGIELHAEEITLLSKA 98 (429)
T ss_dssp GGEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 3589999999999765
No 55
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=70.84 E-value=20 Score=35.44 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=54.8
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHH--H--HHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLA--H--IASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklA--E--~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
..|.|.|+|.+ +|.. |+ ++.+.| .+ .+..++|++-.+.. + ..++.|..||.|.|+|.+....-
T Consensus 17 ~~V~v~G~v~~---~R~~--g~-~~F~~l-rD---~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~--- 83 (434)
T 1x54_A 17 KKVRLAGWVYT---NMRV--GK-KIFLWI-RD---STGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADER--- 83 (434)
T ss_dssp CEEEEEEEEEE---EEEE--TT-EEEEEE-EE---TTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT---
T ss_pred CEEEEEEEEEE---EecC--CC-eEEEEE-EE---CCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCC---
Confidence 46999999974 4443 55 433333 33 35569999854321 1 23367999999999999987631
Q ss_pred CeEEEEEEEeeEEeccCC
Q 019560 146 GQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 146 ~r~~~eViV~~I~FL~~k 163 (339)
+...++|.|++|..|.+.
T Consensus 84 ~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 84 APGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp SGGGEEEEEEEEEEEECC
T ss_pred CCccEEEEEeEEEEeecC
Confidence 223589999999999865
No 56
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=69.52 E-value=25 Score=36.16 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=56.9
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc--H---HHHHHhhCCCCCeEEEEEEeeecCCCc
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD--L---AHIASSHLKKDDHVHIAGQLTADPPAI 144 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGk--l---AE~~a~yLkKGD~V~VeGrL~s~syed 144 (339)
-.|.|-|+|.+ +|. .|+ ++.+.|- + .+..|.|++-.+ . .-..++.|..||.|.|+|.+....-..
T Consensus 63 ~~V~v~Gwv~~---~R~--~gk-l~Fi~Lr-D---~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~ 132 (548)
T 3i7f_A 63 KTVTIRARVQA---VRG--KGN-MVFLFLR-K---GIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPI 132 (548)
T ss_dssp CEEEEEEEEEE---EEE--CSS-EEEEEEE-E---TTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCC
T ss_pred CEEEEEEEEEE---Eec--CCC-eEEEEEE-E---CCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCccc
Confidence 56899999974 444 353 4444443 2 345888888652 1 112356799999999999999864222
Q ss_pred C--CeEEEEEEEeeEEeccCCC
Q 019560 145 E--GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 145 k--~r~~~eViV~~I~FL~~k~ 164 (339)
+ ....++|.|++|..|....
T Consensus 133 ~~~~~~~~El~~~~i~vls~a~ 154 (548)
T 3i7f_A 133 EKATQQDVEIHVTSIAVVSLAE 154 (548)
T ss_dssp TTSSSCSEEEEEEEEEEEECCC
T ss_pred ccCCCCcEEEEEeEEEEEecCC
Confidence 2 2346899999999998763
No 57
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=68.76 E-value=21 Score=35.19 Aligned_cols=75 Identities=13% Similarity=0.294 Sum_probs=53.0
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCC-CCCeEEEEEEeeecCCCcCCe
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLK-KDDHVHIAGQLTADPPAIEGQ 147 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLk-KGD~V~VeGrL~s~syedk~r 147 (339)
-..|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-. +.|. .||.|.|+|.+....- +.
T Consensus 13 ~~~V~v~Gwv~~---~R~~--g~-~~F~~lr-D---~~g~iQ~v~~~-------~~l~~~~~~v~v~G~v~~~~~---~~ 72 (422)
T 1n9w_A 13 GQEVELLGFLHW---RRDL--GR-IQFLLLR-D---RSGVVQVVTGG-------LKLPLPESALRVRGLVVENAK---AP 72 (422)
T ss_dssp TSEEEEEEEEEE---EEEC--SS-EEEEEEE-E---TTEEEEEEEES-------CCCCCTTCEEEEEEEEEECTT---ST
T ss_pred CCEEEEEEEEEE---EecC--CC-eEEEEEE-E---CCEEEEEEEEc-------cccCCCCCEEEEEEEEEecCC---CC
Confidence 346999999974 4543 55 4443333 3 34568888754 6799 9999999999987631 12
Q ss_pred EEEEEEEeeEEeccCC
Q 019560 148 ANVQVMVHSLNLIEPT 163 (339)
Q Consensus 148 ~~~eViV~~I~FL~~k 163 (339)
..++|.|++|..|++.
T Consensus 73 ~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 73 GGLEVQAKEVEVLSPA 88 (422)
T ss_dssp TSEEEEEEEEEEEECC
T ss_pred ccEEEEEeEEEEeccC
Confidence 2589999999999765
No 58
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=65.87 E-value=12 Score=33.15 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=40.8
Q ss_pred EEEEEEEeCCCCeEE---ECCCCcEEEEEEEEEcCCCCCe-eEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCC
Q 019560 71 SVNLIGHVDAPVQFQ---TSSDGKHWAGTVIVQHAASHSL-WIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 71 ~V~LIGrLgkDPElr---~T~~G~~Va~fsLAv~r~~~T~-wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~sy 142 (339)
.|.+||.|..--+++ .-.+|+......+.... ++. -|+|++||+.|+.+. ...|+.|.+.|-- ...|
T Consensus 140 ~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D--~sg~~i~~tLWg~~a~~~~--~~~~~vv~i~~~~-v~~f 210 (246)
T 1jmc_A 140 LVDIIGICKSYEDATKITVRSNNREVAKRNIYLMD--TSGKVVTATLWGEDADKFD--GSRQPVLAIKGAR-VSDF 210 (246)
T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEEC--TTCCEEEEEEEHHHHHHCC--CTTCCEEEEEEEE-EECT
T ss_pred ceeEEEEEEEecCeEEEEEecCCCccEEEEEEEEC--CCCCEEEEEEEchhhhhcc--cCCCCEEEEEEEE-EEec
Confidence 588899887533332 22256644333333322 343 599999999998754 5788877776643 3445
No 59
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=63.12 E-value=47 Score=26.33 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=42.6
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEE-EEeeec
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIA-GQLTAD 140 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~Ve-GrL~s~ 140 (339)
...|.++|+|-.- ....+|..+....|+ ++|--|++++|++- .+..++.|+.|.|. |.....
T Consensus 15 ~~~v~v~~~V~~~---~~~~~~~~~~~~~l~----DeTG~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~ 77 (109)
T 2kbn_A 15 GQWANLKAKVIQL---WENTHESISQVGLLG----DETGIIKFTIWKNA---ELPLLEQGESYLLRSVVVGEY 77 (109)
T ss_dssp TCEEEEEEEEEEE---EECCCSSEEEEEEEE----CTTCCEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEE
T ss_pred CCcEEEEEEEEEe---EcCCCCeEEEEEEEE----CCCCeEEEEEECcc---cccccCCCCEEEEEEEEEEEE
Confidence 5678999998742 223345554444444 35668999999944 23579999999999 677653
No 60
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.33 E-value=31 Score=35.45 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHH--HHhhCCCCCeEEEEEEeeecCCC--c-C
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHI--ASSHLKKDDHVHIAGQLTADPPA--I-E 145 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~--~a~yLkKGD~V~VeGrL~s~sye--d-k 145 (339)
.|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+..+. .++.|..||.|.|+|.+..+.-. + +
T Consensus 17 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~ 86 (585)
T 1c0a_A 17 QVTLCGWVNR---RRDL--GS-LIFIDMR-D---REGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRD 86 (585)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTT
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEEE-E---CCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccccccc
Confidence 5999999974 4443 43 3333332 2 3456999886554332 34679999999999999876321 1 1
Q ss_pred -CeEEEEEEEeeEEeccCCC
Q 019560 146 -GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 146 -~r~~~eViV~~I~FL~~k~ 164 (339)
..-.++|.|++|..|....
T Consensus 87 ~~~geiEl~~~~i~vl~~a~ 106 (585)
T 1c0a_A 87 MATGEIEVLASSLTIINRAD 106 (585)
T ss_dssp STTTTEEEEEEEEEEEECCC
T ss_pred CCCccEEEEEeEEEEEeccC
Confidence 2234899999999998654
No 61
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=61.93 E-value=32 Score=34.62 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=53.4
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HHH---HHHhhCCCCCeEEEEEEeeecCCCcCC
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LAH---IASSHLKKDDHVHIAGQLTADPPAIEG 146 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGk-lAE---~~a~yLkKGD~V~VeGrL~s~syedk~ 146 (339)
.|.|.|+|-. +|.. |+ ++.+.| .+ .+..|+|++-.+ +.+ ...+.|..||.|.|+|.+....- +
T Consensus 58 ~V~v~Gwv~~---~R~~--gk-~~F~~L-rD---~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~---g 124 (493)
T 3a74_A 58 EVAVAGRIMT---KRGM--GK-AGFAHI-QD---VTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKV---G 124 (493)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEE-EE---TTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTT---C
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEE-EE---CCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC---C
Confidence 6999999974 4443 44 333333 33 245799988644 222 13367999999999999987521 2
Q ss_pred eEEEEEEEeeEEeccCC
Q 019560 147 QANVQVMVHSLNLIEPT 163 (339)
Q Consensus 147 r~~~eViV~~I~FL~~k 163 (339)
.++|.|++|..|.+.
T Consensus 125 --e~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 125 --ELSIKVSSYEFLTKA 139 (493)
T ss_dssp --CEEEEEEEEEEEECC
T ss_pred --cEEEEEEEEEEcccc
Confidence 489999999999765
No 62
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=61.76 E-value=25 Score=36.21 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=54.8
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-HHHHHhhCCCCCeEEEEEEeeecCCCcC--Ce
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-AHIASSHLKKDDHVHIAGQLTADPPAIE--GQ 147 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGkl-AE~~a~yLkKGD~V~VeGrL~s~syedk--~r 147 (339)
.|.|.|+|.+ +|.. |+ ++.+.|- + .+..++|++-.+. +-..++.|..||.|.|+|.+..+.-... ..
T Consensus 18 ~V~l~GwV~~---~R~~--G~-~~Fi~Lr-D---~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ 87 (580)
T 1l0w_A 18 EVVLEGWVNR---RRDL--GG-LIFLDLR-D---REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLAT 87 (580)
T ss_dssp EEEEEEEEEE---EEEC--SS-CEEEEEE-E---TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTT
T ss_pred EEEEEEEEEE---EecC--CC-eEEEEEE-E---CCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCC
Confidence 6999999974 4443 43 3333332 2 3456888885542 1123467999999999999988751111 22
Q ss_pred EEEEEEEeeEEeccCCC
Q 019560 148 ANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 148 ~~~eViV~~I~FL~~k~ 164 (339)
-.++|.|++|..|....
T Consensus 88 ge~Ei~~~~i~vl~~a~ 104 (580)
T 1l0w_A 88 GRVEVELSALEVLAEAK 104 (580)
T ss_dssp TTEEEEEEEEEEEECCC
T ss_pred ccEEEEEeEEEEeccCc
Confidence 34899999999998654
No 63
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=56.26 E-value=30 Score=31.51 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=38.9
Q ss_pred CeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCC--cC---CeEEEEEEEeeEEecc
Q 019560 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPA--IE---GQANVQVMVHSLNLIE 161 (339)
Q Consensus 106 T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~sye--dk---~r~~~eViV~~I~FL~ 161 (339)
+--+.|.+-++|.+ .++.||+|.|.|-+...... .. ....+-|.|..|..++
T Consensus 210 Prsi~v~l~~dLvd----~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 210 PRQLEIILEDDLVD----SARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp CCEEEEEEEGGGTT----SSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred CcEEEEEEccCccC----cccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 47899999999875 67999999999999886553 11 3345667777777654
No 64
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=53.27 E-value=89 Score=31.53 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEecc-HH----HHHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGD-LA----HIASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGk-lA----E~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
.|.|.|+|-. +|.. |+ ++.+.| .+ .+..|.|++-.+ +. +...+.|..||.|.|+|.+....-
T Consensus 66 ~V~v~Gwv~~---~R~~--gk-~~F~~L-rD---~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~--- 132 (504)
T 1e1o_A 66 EVSVAGRMMT---RRIM--GK-ASFVTL-QD---VGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQT--- 132 (504)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEE-EE---TTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTT---
T ss_pred EEEEEEEEEE---EecC--CC-cEEEEE-EE---CCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCC---
Confidence 6999999974 4443 44 333333 33 245799988543 21 113467999999999999987521
Q ss_pred CeEEEEEEEeeEEeccCC
Q 019560 146 GQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 146 ~r~~~eViV~~I~FL~~k 163 (339)
+ .++|.|++|..|.+.
T Consensus 133 g--e~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 133 G--ELSIHCTELRLLTKA 148 (504)
T ss_dssp C--CEEEEEEEEEEEECC
T ss_pred c--eEEEEEEEEEEeccc
Confidence 2 489999999999765
No 65
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=49.73 E-value=13 Score=31.89 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.6
Q ss_pred eEEEEEeccHHHHHHhhCCCCCeEEEE
Q 019560 108 WIPILFEGDLAHIASSHLKKDDHVHIA 134 (339)
Q Consensus 108 wI~VvawGklAE~~a~yLkKGD~V~Ve 134 (339)
=++|++|+..|..+.++|+.||-|.+.
T Consensus 66 tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 66 SIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred EEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 379999999999999999999999864
No 66
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=48.30 E-value=1e+02 Score=31.39 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=52.6
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH-H-H--HHHhhCCCCCeEEEEEEeeecCCCcCC
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL-A-H--IASSHLKKDDHVHIAGQLTADPPAIEG 146 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGkl-A-E--~~a~yLkKGD~V~VeGrL~s~syedk~ 146 (339)
.|.|.|+|-. +|.. |+ ++.+.| .+ .+.-|.|++-.+. . + ...+.|..||.|.|+|.+.... .+
T Consensus 88 ~V~v~GwV~~---~R~~--Gk-~~Fi~L-rD---~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~---~g 154 (529)
T 4ex5_A 88 EVAIAGRMML---KRVM--GK-ASFATV-QD---GSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTN---KG 154 (529)
T ss_dssp EEEEEEEEEE---EEEE--TT-EEEEEE-EC---SSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECT---TS
T ss_pred EEEEEEEEEe---eecC--CC-eEEEEE-Ee---CCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcC---CC
Confidence 6999999974 4443 54 333323 23 2347888886542 1 1 2345699999999999998632 12
Q ss_pred eEEEEEEEeeEEeccCCC
Q 019560 147 QANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 147 r~~~eViV~~I~FL~~k~ 164 (339)
.++|.|++|.+|++..
T Consensus 155 --elel~~~~i~vLs~a~ 170 (529)
T 4ex5_A 155 --ELSVKCTQLRLLAKAL 170 (529)
T ss_dssp --CEEEEEEEEEEEECCS
T ss_pred --cEEEEEEEEEEEecCC
Confidence 4899999999997653
No 67
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=36.55 E-value=37 Score=29.38 Aligned_cols=85 Identities=9% Similarity=0.098 Sum_probs=54.0
Q ss_pred cccc-EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcC--------CCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEe
Q 019560 67 KVAN-SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHA--------ASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQL 137 (339)
Q Consensus 67 ~l~N-~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r--------~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL 137 (339)
.|-+ .|.|-|.+. -+....+| .+..|.|.--- .-....|.|.+=...+ .-.--+.|.|+|+|
T Consensus 51 ~LdGk~VripGfvv---PLe~~~~~-~vteFlLVPy~GACiH~PPPPpNQiI~V~~~~g~~-----~~~l~~pvwV~G~L 121 (150)
T 4hsp_A 51 ALDGIEAKLPGYIV---PLEISEAG-LVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKGVQ-----MDELYQPFWVEGTF 121 (150)
T ss_dssp GGTTEEEEEEEEEE---EEEECTTS-EEEEEEEESSTTBTTTBCCCCGGGCEEEEEEEEEE-----STTTTSCEEEEEEE
T ss_pred hhCCCEEEeccEEE---EeccCCCC-cEEEEEEeCCCCcCcCCCCCCCceEEEEECCCCcc-----chhccceEEEEEEE
Confidence 5544 567778886 23233223 46777665332 1223677776543332 11223899999999
Q ss_pred eecCCCcC-CeEEEEEEEeeEEec
Q 019560 138 TADPPAIE-GQANVQVMVHSLNLI 160 (339)
Q Consensus 138 ~s~syedk-~r~~~eViV~~I~FL 160 (339)
++...+.+ ..+.|.+.++.|+-.
T Consensus 122 ~~~~~~~~l~~~~Y~m~a~~i~~y 145 (150)
T 4hsp_A 122 KVENASSELAAAGYRMQASKVTPY 145 (150)
T ss_dssp ECCCEECSSCEESEEEEEEEEEEC
T ss_pred EEeeecccceeEEeEEeeeEEEEe
Confidence 99998877 888899999988654
No 68
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=35.91 E-value=51 Score=30.26 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=38.2
Q ss_pred CeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCcC-CeEEEEEEEeeEEeccCC
Q 019560 106 SLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE-GQANVQVMVHSLNLIEPT 163 (339)
Q Consensus 106 T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syedk-~r~~~eViV~~I~FL~~k 163 (339)
+--+.|.+-++|.+ .++.||+|.|.|-+.... ... ....+-|.|..|...+..
T Consensus 197 Prsi~V~l~~dLvd----~~~PGDrV~vtGI~~~~~-~~~~~~~~~~l~a~~I~~~~~~ 250 (279)
T 1ltl_A 197 PRQITVVLEDDLVD----TLTPGDIVRVTGTLRTVR-DERTKRFKNFIYGNYTEFLEQE 250 (279)
T ss_dssp CCEEEEEEEGGGTT----CCCTTCEEEEEEEEEEEE-ETTTTEEEEEEEEEECCBC---
T ss_pred CeEEEEEEcccccC----ccCCCCEEEEEEEEEEee-CCCCceEEEEEEEEEEEEecCc
Confidence 47899999999865 679999999999998764 222 445667777777665443
No 69
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=34.08 E-value=50 Score=30.49 Aligned_cols=73 Identities=18% Similarity=0.047 Sum_probs=48.5
Q ss_pred ccEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 69 ANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 69 ~N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
-..|.+||-|..=-..+.+.+...++.|+|.=.. .. -+.|.+|.+..+.+-.-.+.||.|.+. +++...|.++
T Consensus 15 ~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S-~~--gl~v~iF~~~~~~LP~v~~~GDII~l~-~vki~~~~g~ 87 (294)
T 1xjv_A 15 GTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-NV--KLTCLLFSGNYEALPIIYKNGDIVRFH-RLKIQVYKKE 87 (294)
T ss_dssp SEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTT-CC--EEEEEEEESSGGGSCCCCSTTCEEEEE-EEEEEEETTE
T ss_pred CCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCC-CC--CEEEEEECCChHHCCCCCCCCCEEEEE-EEEEEEECCe
Confidence 4568999988643333455444667777776432 22 399999998777666555999988887 4555566554
No 70
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=28.30 E-value=1.3e+02 Score=29.17 Aligned_cols=69 Identities=10% Similarity=0.103 Sum_probs=42.0
Q ss_pred EEEEEEEeCCCCeEEE-C--CCCcE--EEEEEEEEcCCCCC-eeEEEEEeccHHHHHHh--hCCCCCeEEEEEEeeecCC
Q 019560 71 SVNLIGHVDAPVQFQT-S--SDGKH--WAGTVIVQHAASHS-LWIPILFEGDLAHIASS--HLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~-T--~~G~~--Va~fsLAv~r~~~T-~wI~VvawGklAE~~a~--yLkKGD~V~VeGrL~s~sy 142 (339)
.|.+||.|..--+++. + .+|+. +..+.|. + ++ .-|+|++||+.|+.+.. ....|+.|.|.|-. ...|
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~-D---~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~k-V~~f 209 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLV-D---QGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVK-VGDF 209 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEE-C---TTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCE-EECT
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEE-e---CCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEE-Eeec
Confidence 4677887765333332 2 25653 4444443 2 33 47999999999987552 26788888888743 3346
Q ss_pred Cc
Q 019560 143 AI 144 (339)
Q Consensus 143 ed 144 (339)
.+
T Consensus 210 ~G 211 (444)
T 4gop_C 210 GG 211 (444)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 71
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=24.61 E-value=1.3e+02 Score=25.58 Aligned_cols=48 Identities=15% Similarity=0.105 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCeeEEEEEe-------ccHHHHHHhhCCCCCeEEEEEEeeecCC
Q 019560 95 GTVIVQHAASHSLWIPILFE-------GDLAHIASSHLKKDDHVHIAGQLTADPP 142 (339)
Q Consensus 95 ~fsLAv~r~~~T~wI~Vvaw-------GklAE~~a~yLkKGD~V~VeGrL~s~sy 142 (339)
.|+|+........-|.|..- |.....+.++++.||.|.|.|-.-.-.+
T Consensus 56 ~ySi~s~~~~~~~~i~vk~~~~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~ 110 (243)
T 4eh1_A 56 QYSLSHASNGREYRISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFY 110 (243)
T ss_dssp EEEBCSCCCSSCEEEEEECTTTTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCC
T ss_pred eeEeccCCCCCeEEEEEEEeecCCCCCCeehhHHHhcCCCCCEEEEEccCcccCc
Confidence 35555432223333444444 6677778788999999999997654433
No 72
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=24.29 E-value=78 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=42.4
Q ss_pred EEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCCCCeEEEEE
Q 019560 71 SVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKKDDHVHIAG 135 (339)
Q Consensus 71 ~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkKGD~V~VeG 135 (339)
...++|=|....+.+.+.+|+.++.+.|.-=. .....+.|-+||+..+. .-.+..|+.|+|-.
T Consensus 57 dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~-~~~~~V~lfLFg~a~~~-~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSNNGKTFSIWRLNDLK-DLDKYISLFLFGDVHKE-HWKTDQGTVIGLLN 119 (200)
T ss_dssp CEEEEEEEEEEECC-------CCEEEEEECSS-STTCCEEEEECHHHHHH-HTTCCTTEEEEEES
T ss_pred CEEEEEEEEecCCccCcCCCCeEEEEEEEecC-CCCcEEEEEEechHHHH-hcCcCCceEEEEEC
Confidence 67889999998888889999987777665221 12357999999988776 33599999999875
No 73
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.11 E-value=44 Score=35.42 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=42.1
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccHHHHHHhhCCC--CCeEEEEEEeee
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDLAHIASSHLKK--DDHVHIAGQLTA 139 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGklAE~~a~yLkK--GD~V~VeGrL~s 139 (339)
..|++.|.|..-...++ .+.... .+.+.. .+..+.+++|+.- .+.+.++. |+.|.|.|++..
T Consensus 166 ~~~~~~~~v~~~~~~~~--~~~~~~--~~~~~d--~~~~~~~~~f~~~--~~~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 166 EKVTTQGKIVSVETKKF--QNMNIL--TAVLSD--GLVHVPLKWFNQD--YLQTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp CCCEEEECCCCCEEEEC--SSCEEE--EEEECC--SSCCEEEEECSCC--TTHHHHHTTCSSCEEEEEEECS
T ss_pred CEEEEEEEEEEEEeecC--CCCeEE--EEEEEE--CCceEEEEEECcH--HHHhhCccCCCCEEEEEEEEEE
Confidence 48899999998654433 333332 333332 3446899999842 34566788 999999999976
No 74
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0
Probab=23.73 E-value=15 Score=32.76 Aligned_cols=27 Identities=15% Similarity=0.001 Sum_probs=23.3
Q ss_pred CCCccCCCCcceeccC--CchhhhccCCC
Q 019560 305 PDFKHKETGKPLWLNY--SPAWVTSQLPP 331 (339)
Q Consensus 305 pDfkhk~~~~~lwl~~--~p~wv~~~l~~ 331 (339)
=-|+|.+||-.||-.+ .|.|...|.+.
T Consensus 144 fRL~H~~T~~yL~sh~~~lp~wg~~Q~EV 172 (199)
T 3mal_A 144 VRLQHIDTSGYLHSHDKKYQRIAGGQQEV 172 (199)
T ss_dssp EEEEETTTCCEEEEEEEECCSSSTTCEEE
T ss_pred EEEEECCCCeEEeeCCCCCCCCCCcceEE
Confidence 4588999999999985 89999998775
No 75
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1
Probab=21.58 E-value=18 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=22.5
Q ss_pred CCccCCCCcceeccC--CchhhhccCCC
Q 019560 306 DFKHKETGKPLWLNY--SPAWVTSQLPP 331 (339)
Q Consensus 306 Dfkhk~~~~~lwl~~--~p~wv~~~l~~ 331 (339)
-|+|.+||..||... .|.|...|.+.
T Consensus 133 RL~H~~tg~yL~~~~~~lp~w~~~Q~EV 160 (187)
T 1t9f_A 133 KLRHAVTGSYLSLSGQQFGRPIHGQREV 160 (187)
T ss_dssp EEEETTTCCEEEEEEEECCTTSTTCEEE
T ss_pred EEEECCcCeEEecCCcccCCCCCCceEE
Confidence 468999999999985 79999888776
No 76
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=21.44 E-value=1.6e+02 Score=30.66 Aligned_cols=82 Identities=12% Similarity=0.285 Sum_probs=53.3
Q ss_pred cEEEEEEEeCCCCeEEECCCCcEEEEEEEEEcCCCCCeeEEEEEeccH----HHHHHhhCCCCCeEEEEEEeeecCCCcC
Q 019560 70 NSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHSLWIPILFEGDL----AHIASSHLKKDDHVHIAGQLTADPPAIE 145 (339)
Q Consensus 70 N~V~LIGrLgkDPElr~T~~G~~Va~fsLAv~r~~~T~wI~VvawGkl----AE~~a~yLkKGD~V~VeGrL~s~syedk 145 (339)
..|.|.|+|.+- | ++. |..-.+ .+-.++|++-.+. +-..++.|..|+.|.|+|.+..+.-...
T Consensus 25 ~~V~l~GwV~~~---R---~~~----Fi~LrD---~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 91 (617)
T 4ah6_A 25 QEVTLCGWIQYR---R---QNT----FLVLRD---FDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQE 91 (617)
T ss_dssp CEEEEEEEECCC---C---TTT----EEEEEC---SSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCC
T ss_pred CEEEEEEEeeee---c---CeE----EEEEEe---CCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCcccc
Confidence 379999999852 2 121 322222 2447888876543 1234567999999999999987532111
Q ss_pred ----CeEEEEEEEeeEEeccCCC
Q 019560 146 ----GQANVQVMVHSLNLIEPTS 164 (339)
Q Consensus 146 ----~r~~~eViV~~I~FL~~k~ 164 (339)
..-.++|.|++|..|....
T Consensus 92 n~~~~tgeiEl~~~~i~vL~~a~ 114 (617)
T 4ah6_A 92 NPKMPTGEIEIKVKTAELLNACK 114 (617)
T ss_dssp CTTSTTTTEEEEEEEEEEEECBC
T ss_pred CccCCCCcEEEEEeEEEEeecCC
Confidence 1124899999999997654
Done!