BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019561
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T46|XPP3_DICDI Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum
GN=xpnpep3 PE=2 SV=1
Length = 518
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 57 IMIMERSLSFKNWDSNVPEKEKSNSISFKDKMNKPTILLPEPVVFH-SPRPVSELDAAAT 115
I+ +E + +DSNVPEK + SI +D + P + V+ H +P+ +SE+++ +
Sbjct: 457 IITIEPGIYISKYDSNVPEKYRGISIRVEDDVVIPNLNNSPLVLTHLAPKEISEIESIMS 516
>sp|A0AF28|SYK_LISW6 Lysine--tRNA ligase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=lysS PE=3 SV=1
Length = 498
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 184 LSKDENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
++ DE A++LA +H + AI YGH L+ +++ + + K QP F +
Sbjct: 338 VTSDEEARELAKKHDV-AITEHMTYGHILNEFFETYVEEKLIQPTFVY 384
>sp|Q9PR83|SYK_UREPA Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B1AI47|SYK_UREP2 Lysine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
27815 / 27 / NCTC 11736) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQAIELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLVEPTFVY 378
>sp|B5ZAP2|SYK_UREU1 Lysine--tRNA ligase OS=Ureaplasma urealyticum serovar 10 (strain
ATCC 33699 / Western) GN=lysS PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 187 DENAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSKSTQPFFYW 231
DE A +LA +H ++ +D + +GH ++ +++ + + K +P F +
Sbjct: 334 DEQALELAKKHHVKLLDHQKNFGHIVNAFFETFVEEKLIEPTFVY 378
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,593,166
Number of Sequences: 539616
Number of extensions: 5208094
Number of successful extensions: 11971
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11968
Number of HSP's gapped (non-prelim): 13
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)