Query 019562
Match_columns 339
No_of_seqs 301 out of 2489
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 3.5E-76 7.6E-81 555.1 27.8 283 41-337 1-286 (371)
2 PRK14296 chaperone protein Dna 100.0 5.8E-67 1.3E-71 504.6 28.3 281 43-337 3-296 (372)
3 PRK14298 chaperone protein Dna 100.0 3.9E-66 8.5E-71 499.6 27.2 283 42-337 3-287 (377)
4 PRK14287 chaperone protein Dna 100.0 7.6E-66 1.6E-70 497.0 28.3 281 43-337 3-284 (371)
5 PRK14276 chaperone protein Dna 100.0 1.1E-65 2.4E-70 497.6 27.8 284 43-338 3-293 (380)
6 PRK14280 chaperone protein Dna 100.0 1.3E-65 2.8E-70 496.5 28.3 283 43-337 3-289 (376)
7 PTZ00037 DnaJ_C chaperone prot 100.0 2.4E-65 5.3E-70 498.1 26.4 290 21-337 5-296 (421)
8 PRK14278 chaperone protein Dna 100.0 5.4E-65 1.2E-69 492.2 28.6 283 43-337 2-285 (378)
9 PRK14288 chaperone protein Dna 100.0 3.5E-65 7.7E-70 492.0 26.8 278 43-337 2-280 (369)
10 PRK14282 chaperone protein Dna 100.0 6.1E-65 1.3E-69 490.9 28.5 286 42-338 2-299 (369)
11 PRK14286 chaperone protein Dna 100.0 1E-64 2.2E-69 489.3 27.0 283 43-337 3-292 (372)
12 PRK14277 chaperone protein Dna 100.0 1.3E-64 2.8E-69 491.1 27.7 288 41-337 2-301 (386)
13 PRK14297 chaperone protein Dna 100.0 3.5E-64 7.5E-69 487.4 28.0 285 43-337 3-294 (380)
14 PRK14285 chaperone protein Dna 100.0 7.4E-64 1.6E-68 482.2 27.1 280 43-338 2-289 (365)
15 PRK14279 chaperone protein Dna 100.0 1.2E-63 2.6E-68 484.6 26.8 283 43-337 8-315 (392)
16 PRK14284 chaperone protein Dna 100.0 1.8E-63 3.9E-68 483.8 26.7 282 44-337 1-300 (391)
17 PRK14294 chaperone protein Dna 100.0 6.5E-63 1.4E-67 476.3 26.8 282 42-337 2-286 (366)
18 PRK14295 chaperone protein Dna 100.0 1.1E-62 2.5E-67 477.3 27.3 284 42-337 7-308 (389)
19 PRK14281 chaperone protein Dna 100.0 1.5E-62 3.3E-67 477.9 28.0 294 43-337 2-308 (397)
20 PRK14301 chaperone protein Dna 100.0 6.4E-63 1.4E-67 477.0 25.2 278 43-337 3-286 (373)
21 TIGR02349 DnaJ_bact chaperone 100.0 1.5E-62 3.3E-67 472.7 27.2 283 45-337 1-289 (354)
22 PRK14291 chaperone protein Dna 100.0 1.9E-62 4.2E-67 475.3 27.6 289 43-337 2-297 (382)
23 PRK14283 chaperone protein Dna 100.0 4.5E-62 9.8E-67 472.4 26.9 292 40-337 1-292 (378)
24 PRK10767 chaperone protein Dna 100.0 6.2E-62 1.3E-66 470.8 27.0 279 42-337 2-284 (371)
25 PRK14289 chaperone protein Dna 100.0 1.3E-61 2.8E-66 470.6 28.3 294 42-338 3-301 (386)
26 PRK14290 chaperone protein Dna 100.0 3.5E-61 7.5E-66 464.2 28.1 284 44-337 3-292 (365)
27 PRK14300 chaperone protein Dna 100.0 2.7E-61 5.8E-66 465.8 26.9 284 43-338 2-288 (372)
28 PRK14293 chaperone protein Dna 100.0 1.7E-60 3.7E-65 460.8 27.2 287 43-337 2-289 (374)
29 PRK14292 chaperone protein Dna 100.0 2.5E-60 5.5E-65 459.6 27.8 282 44-337 2-284 (371)
30 KOG0712 Molecular chaperone (D 100.0 7.5E-57 1.6E-61 418.6 18.6 270 42-337 2-274 (337)
31 PRK14299 chaperone protein Dna 100.0 3.5E-45 7.5E-50 342.8 20.7 212 43-337 3-223 (291)
32 PRK10266 curved DNA-binding pr 100.0 9.3E-44 2E-48 335.6 22.5 223 44-337 4-231 (306)
33 KOG0715 Molecular chaperone (D 100.0 7.5E-42 1.6E-46 318.0 14.6 245 45-327 44-288 (288)
34 KOG0713 Molecular chaperone (D 100.0 7.6E-39 1.6E-43 294.6 9.1 257 41-336 13-272 (336)
35 TIGR03835 termin_org_DnaJ term 100.0 1.5E-28 3.3E-33 246.2 18.5 78 258-337 691-768 (871)
36 KOG0714 Molecular chaperone (D 99.8 2.6E-20 5.6E-25 173.8 14.6 235 43-337 2-274 (306)
37 KOG0716 Molecular chaperone (D 99.8 3.7E-20 8E-25 166.1 4.7 72 43-114 30-102 (279)
38 PTZ00341 Ring-infected erythro 99.8 1.4E-19 3E-24 185.9 7.6 76 39-114 568-643 (1136)
39 KOG0691 Molecular chaperone (D 99.8 1.6E-19 3.5E-24 167.2 5.4 90 42-139 3-93 (296)
40 KOG0718 Molecular chaperone (D 99.8 1.6E-19 3.5E-24 171.9 5.3 72 43-114 8-83 (546)
41 COG2214 CbpA DnaJ-class molecu 99.8 6.6E-18 1.4E-22 150.8 14.6 70 40-109 2-73 (237)
42 KOG0717 Molecular chaperone (D 99.7 1.5E-18 3.4E-23 165.2 5.0 75 42-116 6-82 (508)
43 PF00226 DnaJ: DnaJ domain; I 99.7 3.8E-18 8.3E-23 123.9 4.7 62 45-106 1-64 (64)
44 KOG0624 dsRNA-activated protei 99.7 1.8E-17 3.9E-22 153.5 7.5 75 40-115 390-468 (504)
45 KOG0719 Molecular chaperone (D 99.7 2.8E-17 6E-22 144.2 4.9 69 43-111 13-84 (264)
46 PHA03102 Small T antigen; Revi 99.7 5.3E-17 1.2E-21 136.8 5.7 84 44-139 5-90 (153)
47 smart00271 DnaJ DnaJ molecular 99.6 3E-16 6.6E-21 112.3 5.6 58 44-101 1-60 (60)
48 KOG0721 Molecular chaperone (D 99.6 4.5E-16 9.8E-21 135.5 6.1 70 42-111 97-167 (230)
49 COG0484 DnaJ DnaJ-class molecu 99.6 6.1E-16 1.3E-20 146.9 6.6 121 190-322 158-348 (371)
50 cd06257 DnaJ DnaJ domain or J- 99.6 9.6E-16 2.1E-20 107.6 5.8 54 45-98 1-55 (55)
51 KOG0550 Molecular chaperone (D 99.6 1.2E-15 2.6E-20 144.3 5.9 94 37-136 366-461 (486)
52 PRK14282 chaperone protein Dna 99.6 3.4E-15 7.3E-20 144.7 6.9 119 191-321 169-360 (369)
53 PRK14290 chaperone protein Dna 99.5 1.2E-14 2.6E-19 140.7 7.8 119 191-321 165-353 (365)
54 PRK14298 chaperone protein Dna 99.5 8.9E-15 1.9E-19 142.0 6.8 120 191-322 158-349 (377)
55 PRK14294 chaperone protein Dna 99.5 1.5E-14 3.3E-19 140.0 7.2 120 191-322 161-348 (366)
56 PRK10767 chaperone protein Dna 99.5 2.4E-14 5.3E-19 138.9 7.3 119 192-322 160-346 (371)
57 PRK14285 chaperone protein Dna 99.5 1.9E-14 4.1E-19 139.2 6.1 119 191-321 163-350 (365)
58 PRK14300 chaperone protein Dna 99.5 2.6E-14 5.7E-19 138.6 6.8 119 191-321 162-349 (372)
59 PRK14301 chaperone protein Dna 99.5 2.9E-14 6.2E-19 138.3 7.1 120 191-322 161-348 (373)
60 PRK14278 chaperone protein Dna 99.5 4.6E-14 1E-18 137.1 7.8 119 191-321 156-347 (378)
61 PRK14284 chaperone protein Dna 99.5 3.5E-14 7.7E-19 138.5 6.6 119 191-321 175-363 (391)
62 PRK14286 chaperone protein Dna 99.5 4.4E-14 9.6E-19 137.0 6.5 119 191-321 167-354 (372)
63 PRK14281 chaperone protein Dna 99.5 6.2E-14 1.3E-18 137.1 7.4 119 191-321 179-369 (397)
64 PRK14279 chaperone protein Dna 99.5 8.6E-14 1.9E-18 135.8 7.9 118 191-321 190-375 (392)
65 PRK14288 chaperone protein Dna 99.5 9.4E-14 2E-18 134.5 8.0 120 190-321 155-342 (369)
66 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 1.3E-13 2.9E-18 100.6 6.6 65 194-258 1-66 (66)
67 TIGR02349 DnaJ_bact chaperone 99.5 8.5E-14 1.8E-18 134.4 7.2 118 191-320 160-349 (354)
68 PRK14287 chaperone protein Dna 99.5 7.4E-14 1.6E-18 135.4 6.7 119 191-321 155-345 (371)
69 PRK14296 chaperone protein Dna 99.5 1.2E-13 2.6E-18 133.8 7.6 119 191-321 166-358 (372)
70 PRK14280 chaperone protein Dna 99.4 1.2E-13 2.7E-18 134.1 7.5 119 191-321 160-350 (376)
71 PRK14276 chaperone protein Dna 99.4 9.7E-14 2.1E-18 135.0 6.8 119 191-321 163-353 (380)
72 PRK05014 hscB co-chaperone Hsc 99.4 1.6E-13 3.4E-18 118.9 6.5 64 44-107 1-72 (171)
73 PRK14293 chaperone protein Dna 99.4 1.5E-13 3.3E-18 133.4 7.0 120 191-322 160-352 (374)
74 PRK14297 chaperone protein Dna 99.4 1.9E-13 4.2E-18 132.9 7.7 118 191-320 165-354 (380)
75 PRK14277 chaperone protein Dna 99.4 1.6E-13 3.5E-18 133.7 7.0 119 191-321 172-362 (386)
76 PRK01356 hscB co-chaperone Hsc 99.4 1.6E-13 3.4E-18 118.2 6.0 64 44-107 2-71 (166)
77 PRK14295 chaperone protein Dna 99.4 1.8E-13 3.9E-18 133.4 6.9 118 191-321 183-369 (389)
78 PRK14289 chaperone protein Dna 99.4 1.9E-13 4.2E-18 133.3 6.8 118 191-320 171-360 (386)
79 KOG0722 Molecular chaperone (D 99.4 7.2E-14 1.6E-18 124.2 3.4 70 39-108 28-97 (329)
80 PTZ00037 DnaJ_C chaperone prot 99.4 3.5E-13 7.6E-18 132.2 7.7 120 191-320 166-362 (421)
81 PRK00294 hscB co-chaperone Hsc 99.4 3.8E-13 8.2E-18 116.4 7.0 66 42-107 2-75 (173)
82 PRK14283 chaperone protein Dna 99.4 4.9E-13 1.1E-17 130.1 7.2 119 191-321 163-353 (378)
83 KOG0720 Molecular chaperone (D 99.4 3E-13 6.6E-18 129.4 4.8 66 43-108 234-299 (490)
84 PRK14291 chaperone protein Dna 99.4 5.5E-13 1.2E-17 129.8 6.6 108 191-311 173-351 (382)
85 PRK03578 hscB co-chaperone Hsc 99.4 7.7E-13 1.7E-17 114.9 6.5 68 43-110 5-82 (176)
86 PRK14292 chaperone protein Dna 99.4 1.2E-12 2.7E-17 127.0 7.7 119 191-321 157-345 (371)
87 PTZ00100 DnaJ chaperone protei 99.3 9.9E-13 2.2E-17 105.4 4.8 52 43-97 64-115 (116)
88 PRK09430 djlA Dna-J like membr 99.2 6.2E-12 1.3E-16 116.5 4.6 57 42-98 198-262 (267)
89 PHA02624 large T antigen; Prov 99.2 1.1E-11 2.5E-16 124.2 4.5 60 43-105 10-71 (647)
90 PF01556 CTDII: DnaJ C termina 99.2 2.7E-11 5.9E-16 92.1 4.1 52 264-315 27-79 (81)
91 COG5407 SEC63 Preprotein trans 99.1 3.2E-11 7E-16 115.1 3.7 70 42-111 96-171 (610)
92 PRK01773 hscB co-chaperone Hsc 99.0 5.5E-10 1.2E-14 96.7 6.4 64 44-107 2-73 (173)
93 TIGR00714 hscB Fe-S protein as 99.0 1.1E-09 2.5E-14 93.5 6.2 52 56-107 3-60 (157)
94 PRK14299 chaperone protein Dna 98.9 9.6E-10 2.1E-14 103.4 5.1 87 161-321 197-283 (291)
95 KOG0712 Molecular chaperone (D 98.8 1.1E-08 2.3E-13 96.5 7.9 105 193-308 145-324 (337)
96 PRK10266 curved DNA-binding pr 98.7 1.2E-08 2.5E-13 96.7 5.2 84 162-320 206-289 (306)
97 PLN03165 chaperone protein dna 98.7 4.1E-08 8.9E-13 78.3 6.3 61 190-262 40-100 (111)
98 KOG1150 Predicted molecular ch 98.7 1.9E-08 4.1E-13 86.9 4.0 63 42-104 51-115 (250)
99 COG5269 ZUO1 Ribosome-associat 98.6 2.6E-08 5.7E-13 89.8 4.2 67 43-109 42-114 (379)
100 KOG0568 Molecular chaperone (D 98.5 1.3E-07 2.8E-12 83.5 4.2 55 44-98 47-102 (342)
101 TIGR03835 termin_org_DnaJ term 98.3 1.5E-06 3.3E-11 89.0 6.5 71 44-114 2-72 (871)
102 KOG1789 Endocytosis protein RM 98.2 1.2E-06 2.5E-11 91.5 5.2 56 40-97 1277-1336(2235)
103 TIGR02642 phage_xxxx uncharact 98.1 4.4E-06 9.6E-11 72.9 4.6 48 235-283 100-149 (186)
104 KOG0723 Molecular chaperone (D 98.0 1.3E-05 2.7E-10 62.7 5.0 55 43-100 55-109 (112)
105 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.8 8.5E-06 1.8E-10 59.3 1.8 43 191-244 15-66 (66)
106 COG1107 Archaea-specific RecJ- 97.8 1.8E-05 3.8E-10 78.7 3.3 69 192-261 3-81 (715)
107 KOG3192 Mitochondrial J-type c 97.3 0.00027 5.7E-09 59.2 3.6 72 40-111 4-85 (168)
108 PLN03165 chaperone protein dna 96.9 0.00062 1.3E-08 54.5 2.6 41 193-248 54-100 (111)
109 COG1107 Archaea-specific RecJ- 96.8 0.0013 2.7E-08 65.9 4.4 47 191-248 18-82 (715)
110 TIGR02642 phage_xxxx uncharact 96.6 0.0015 3.3E-08 57.1 2.8 29 209-247 100-128 (186)
111 KOG2813 Predicted molecular ch 96.4 0.0038 8.3E-08 58.1 4.2 33 235-270 246-278 (406)
112 COG1076 DjlA DnaJ-domain-conta 95.9 0.0044 9.6E-08 53.9 2.0 53 44-96 113-173 (174)
113 COG1076 DjlA DnaJ-domain-conta 95.4 0.0095 2.1E-07 51.8 2.2 63 45-107 2-72 (174)
114 KOG2813 Predicted molecular ch 94.8 0.015 3.2E-07 54.3 1.8 24 235-261 235-258 (406)
115 KOG0431 Auxilin-like protein a 93.6 0.087 1.9E-06 52.6 4.5 44 52-95 396-447 (453)
116 PF03656 Pam16: Pam16; InterP 93.6 0.14 3E-06 42.1 4.9 56 43-101 57-112 (127)
117 KOG0715 Molecular chaperone (D 86.5 1 2.2E-05 42.4 4.6 51 185-247 175-230 (288)
118 PF11833 DUF3353: Protein of u 86.5 1.3 2.8E-05 39.2 5.0 38 53-97 1-38 (194)
119 TIGR00310 ZPR1_znf ZPR1 zinc f 83.4 5.3 0.00011 35.3 7.4 75 210-284 2-100 (192)
120 cd03031 GRX_GRX_like Glutaredo 82.9 1.4 2.9E-05 37.3 3.3 46 191-245 99-144 (147)
121 PRK14714 DNA polymerase II lar 82.7 0.94 2E-05 50.0 2.8 67 180-265 657-726 (1337)
122 smart00709 Zpr1 Duplicated dom 82.1 6.4 0.00014 33.7 7.2 20 265-284 81-100 (160)
123 KOG2824 Glutaredoxin-related p 81.8 1.7 3.6E-05 40.2 3.7 46 192-247 230-275 (281)
124 COG5552 Uncharacterized conser 80.4 5.9 0.00013 29.2 5.4 47 43-89 2-48 (88)
125 KOG0724 Zuotin and related mol 80.0 1.7 3.8E-05 41.5 3.4 52 56-107 4-60 (335)
126 PF13446 RPT: A repeated domai 78.1 3.6 7.9E-05 29.0 3.8 27 44-70 5-31 (62)
127 PRK04023 DNA polymerase II lar 77.5 1.2 2.7E-05 48.0 1.6 69 175-264 610-679 (1121)
128 KOG2824 Glutaredoxin-related p 76.6 2.6 5.6E-05 39.0 3.2 38 209-261 230-275 (281)
129 TIGR00630 uvra excinuclease AB 75.2 2.2 4.7E-05 46.6 2.8 34 209-246 737-771 (924)
130 cd03031 GRX_GRX_like Glutaredo 74.2 3.1 6.8E-05 35.1 3.0 37 208-259 99-144 (147)
131 PF03589 Antiterm: Antitermina 72.0 1.2 2.6E-05 34.7 -0.0 40 208-247 5-45 (95)
132 TIGR00340 zpr1_rel ZPR1-relate 68.8 14 0.00031 31.7 5.8 20 265-284 78-98 (163)
133 PF10041 DUF2277: Uncharacteri 68.7 23 0.0005 26.3 6.0 46 43-88 2-47 (78)
134 PF04246 RseC_MucC: Positive r 67.8 12 0.00025 30.9 5.0 22 264-285 42-63 (135)
135 PRK14559 putative protein seri 66.3 3.9 8.4E-05 42.8 2.2 52 192-260 2-53 (645)
136 PRK00349 uvrA excinuclease ABC 66.0 4.7 0.0001 44.2 2.9 34 209-246 739-773 (943)
137 PRK00635 excinuclease ABC subu 59.7 6.3 0.00014 45.9 2.5 36 208-247 1607-1643(1809)
138 TIGR03655 anti_R_Lar restricti 59.7 14 0.00031 25.2 3.4 14 209-222 2-15 (53)
139 PRK03564 formate dehydrogenase 59.5 9.7 0.00021 36.2 3.4 19 237-255 215-233 (309)
140 TIGR00630 uvra excinuclease AB 59.2 5 0.00011 43.9 1.6 29 235-263 737-774 (924)
141 PRK05978 hypothetical protein; 58.9 5 0.00011 33.9 1.2 12 230-241 48-59 (148)
142 COG0178 UvrA Excinuclease ATPa 56.3 10 0.00022 40.6 3.1 35 209-247 731-766 (935)
143 PF03833 PolC_DP2: DNA polymer 55.9 3.8 8.2E-05 43.6 0.0 51 191-261 655-705 (900)
144 PRK00349 uvrA excinuclease ABC 53.0 11 0.00023 41.5 2.8 29 235-263 739-776 (943)
145 PF07709 SRR: Seven Residue Re 52.1 8.7 0.00019 18.9 1.0 13 85-97 2-14 (14)
146 PRK00635 excinuclease ABC subu 49.9 7.7 0.00017 45.3 1.2 35 186-220 1601-1642(1809)
147 PF08792 A2L_zn_ribbon: A2L zi 48.7 13 0.00028 22.9 1.6 12 209-220 4-15 (33)
148 PF09538 FYDLN_acid: Protein o 47.0 13 0.00027 29.7 1.7 24 191-214 9-32 (108)
149 PRK00564 hypA hydrogenase nick 47.0 41 0.00089 27.1 4.7 31 189-219 69-99 (117)
150 COG1198 PriA Primosomal protei 46.9 14 0.0003 39.4 2.4 50 191-257 435-484 (730)
151 PF14687 DUF4460: Domain of un 46.0 41 0.00088 27.0 4.5 44 54-97 4-52 (112)
152 TIGR01562 FdhE formate dehydro 44.3 23 0.00051 33.6 3.3 21 236-256 212-232 (305)
153 COG5349 Uncharacterized protei 41.8 8.1 0.00018 31.3 -0.1 6 235-240 41-46 (126)
154 PRK14873 primosome assembly pr 41.5 19 0.00042 38.0 2.5 58 183-258 370-432 (665)
155 PRK12336 translation initiatio 41.3 92 0.002 27.6 6.5 13 235-247 120-132 (201)
156 PF12434 Malate_DH: Malate deh 39.0 36 0.00077 20.0 2.2 17 58-74 10-26 (28)
157 TIGR02300 FYDLN_acid conserved 37.4 23 0.00049 29.1 1.8 26 191-216 9-34 (129)
158 PF07092 DUF1356: Protein of u 37.4 17 0.00036 33.2 1.1 14 209-222 39-52 (238)
159 PRK10862 SoxR reducing system 36.6 79 0.0017 26.8 5.1 20 264-283 49-68 (154)
160 PF01846 FF: FF domain; Inter 36.3 59 0.0013 21.5 3.5 46 60-107 1-50 (51)
161 COG0178 UvrA Excinuclease ATPa 36.0 32 0.00069 37.0 3.0 28 235-262 731-767 (935)
162 PF07295 DUF1451: Protein of u 35.2 29 0.00062 29.3 2.2 13 235-247 131-143 (146)
163 PF14353 CpXC: CpXC protein 34.2 26 0.00057 28.4 1.7 12 235-246 39-50 (128)
164 PF03367 zf-ZPR1: ZPR1 zinc-fi 34.2 48 0.001 28.4 3.4 36 209-244 2-40 (161)
165 PRK12380 hydrogenase nickel in 33.4 38 0.00082 27.1 2.5 30 189-219 68-97 (113)
166 PF07092 DUF1356: Protein of u 33.3 27 0.00059 31.8 1.8 14 235-248 39-52 (238)
167 smart00440 ZnF_C2C2 C2C2 Zinc 32.7 71 0.0015 20.5 3.2 14 210-223 2-15 (40)
168 TIGR00595 priA primosomal prot 32.3 33 0.00072 34.9 2.5 51 191-258 213-263 (505)
169 PF10080 DUF2318: Predicted me 32.3 90 0.0019 24.6 4.4 23 235-257 36-61 (102)
170 PF10571 UPF0547: Uncharacteri 31.7 22 0.00047 20.7 0.6 18 237-254 3-20 (26)
171 PF13453 zf-TFIIB: Transcripti 31.5 31 0.00068 22.1 1.4 8 235-242 20-27 (41)
172 PF13719 zinc_ribbon_5: zinc-r 31.5 43 0.00094 21.0 2.0 10 192-201 3-12 (37)
173 PRK00464 nrdR transcriptional 31.5 49 0.0011 28.2 3.0 9 210-218 2-10 (154)
174 PF01155 HypA: Hydrogenase exp 30.0 34 0.00074 27.3 1.7 30 189-219 68-97 (113)
175 PRK05580 primosome assembly pr 30.0 31 0.00066 36.6 1.8 51 191-258 381-431 (679)
176 TIGR00100 hypA hydrogenase nic 29.7 76 0.0016 25.4 3.7 29 189-218 68-96 (115)
177 PF07739 TipAS: TipAS antibiot 29.4 1.1E+02 0.0024 23.8 4.7 52 51-110 51-104 (118)
178 PF14803 Nudix_N_2: Nudix N-te 28.5 40 0.00087 20.9 1.5 7 235-241 23-29 (34)
179 PF14205 Cys_rich_KTR: Cystein 28.1 94 0.002 21.6 3.3 12 250-261 30-41 (55)
180 PTZ00191 60S ribosomal protein 27.9 79 0.0017 26.6 3.6 35 17-51 30-67 (145)
181 PRK00398 rpoP DNA-directed RNA 27.5 45 0.00097 21.9 1.7 6 193-198 5-10 (46)
182 PRK03681 hypA hydrogenase nick 27.2 56 0.0012 26.2 2.5 30 189-218 68-97 (114)
183 TIGR00757 RNaseEG ribonuclease 26.9 31 0.00068 34.2 1.2 13 235-247 391-403 (414)
184 COG1326 Uncharacterized archae 26.9 1.1E+02 0.0023 27.1 4.3 19 267-285 66-86 (201)
185 PF09862 DUF2089: Protein of u 26.3 49 0.0011 26.6 2.0 19 237-255 1-19 (113)
186 PF01096 TFIIS_C: Transcriptio 26.2 84 0.0018 20.0 2.7 16 210-225 2-17 (39)
187 cd01388 SOX-TCF_HMG-box SOX-TC 25.5 1.3E+02 0.0027 21.6 4.0 41 63-107 14-54 (72)
188 PF07754 DUF1610: Domain of un 25.4 53 0.0012 18.8 1.5 7 235-241 17-23 (24)
189 PRK11032 hypothetical protein; 24.8 57 0.0012 27.9 2.2 16 60-75 3-18 (160)
190 PF09855 DUF2082: Nucleic-acid 24.8 97 0.0021 22.2 3.1 7 194-200 3-9 (64)
191 COG1198 PriA Primosomal protei 24.7 46 0.001 35.5 2.0 40 191-243 444-484 (730)
192 KOG3442 Uncharacterized conser 24.1 1E+02 0.0022 25.2 3.4 56 43-101 58-113 (132)
193 COG3809 Uncharacterized protei 24.1 60 0.0013 24.3 1.9 8 249-256 22-29 (88)
194 cd00084 HMG-box High Mobility 24.1 1.4E+02 0.0031 20.2 3.9 42 62-107 12-53 (66)
195 PRK04023 DNA polymerase II lar 23.7 42 0.00091 36.9 1.5 37 207-258 625-661 (1121)
196 PF09285 Elong-fact-P_C: Elong 23.7 66 0.0014 22.5 2.0 20 266-285 30-49 (56)
197 PF08274 PhnA_Zn_Ribbon: PhnA 23.4 37 0.0008 20.5 0.6 8 193-200 4-11 (30)
198 PF10080 DUF2318: Predicted me 23.3 36 0.00077 26.9 0.7 24 191-214 35-58 (102)
199 PRK05580 primosome assembly pr 23.0 53 0.0011 34.8 2.1 42 190-244 389-431 (679)
200 PRK14873 primosome assembly pr 22.7 65 0.0014 34.1 2.6 40 191-244 392-432 (665)
201 smart00841 Elong-fact-P_C Elon 22.7 73 0.0016 22.2 2.0 20 266-285 30-49 (56)
202 COG2260 Predicted Zn-ribbon RN 22.3 58 0.0013 22.9 1.5 8 249-256 18-25 (59)
203 PF13717 zinc_ribbon_4: zinc-r 22.2 78 0.0017 19.7 2.0 10 192-201 3-12 (36)
204 PTZ00368 universal minicircle 21.9 88 0.0019 26.0 2.9 11 210-220 54-64 (148)
205 cd01390 HMGB-UBF_HMG-box HMGB- 21.9 1.6E+02 0.0035 20.1 3.9 40 65-108 15-54 (66)
206 PF12773 DZR: Double zinc ribb 21.8 73 0.0016 21.0 1.9 20 235-254 30-49 (50)
207 PF04216 FdhE: Protein involve 21.7 28 0.0006 32.6 -0.3 8 249-256 239-246 (290)
208 PHA02998 RNA polymerase subuni 21.3 1.2E+02 0.0027 26.3 3.6 34 208-241 143-178 (195)
209 cd01389 MATA_HMG-box MATA_HMG- 21.0 1.9E+02 0.0041 20.9 4.2 42 62-107 13-54 (77)
210 PF08273 Prim_Zn_Ribbon: Zinc- 20.8 79 0.0017 20.4 1.8 9 192-200 4-12 (40)
211 PRK14714 DNA polymerase II lar 20.6 55 0.0012 36.9 1.6 35 208-257 667-701 (1337)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-76 Score=555.11 Aligned_cols=283 Identities=45% Similarity=0.777 Sum_probs=255.2
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~ 119 (339)
++.+|||+||||+++||++|||||||+||++||||+|+ +++|+++|++|+|||||||||+||++||+||.++++.+..+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 35789999999999999999999999999999999999 88999999999999999999999999999999988632222
Q ss_pred CCCCCCCC--ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCC
Q 019562 120 LSNTSQGV--DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (339)
Q Consensus 120 ~~~~~~~~--~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C 197 (339)
+. ++.++ +..|||++|||+..+ + . ...+...++.|+++.|.|||+||++|+++++.+++.+.|+.|
T Consensus 81 g~-g~~~fgg~~~DIF~~~FgGg~~--~---~------~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C 148 (371)
T COG0484 81 GF-GFGGFGGDFGDIFEDFFGGGGG--G---R------RRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTC 148 (371)
T ss_pred CC-CcCCCCCCHHHHHHHhhcCCCc--c---c------CCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcC
Confidence 11 22222 578999999963211 0 0 011235689999999999999999999999999999999999
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCC
Q 019562 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (339)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G 277 (339)
+|+|.+......+|++|+|+|.+...+++ |++++.++|+.|+|+|+++.++|..|+|.+++...++|+|+||+|+.+|
T Consensus 149 ~GsGak~gt~~~tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g 226 (371)
T COG0484 149 HGSGAKPGTDPKTCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDG 226 (371)
T ss_pred CCCCCCCCCCCCcCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccC
Confidence 99999999999999999999999888877 7888889999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++|++.|+|++..+++++|||||+|.|++|+.|.|+|+|||++++|++.+|+||++|+||
T Consensus 227 ~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vp 286 (371)
T COG0484 227 DRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVP 286 (371)
T ss_pred CEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEE
Confidence 999999999999888889999999999999999999999999999999999999999997
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-67 Score=504.59 Aligned_cols=281 Identities=33% Similarity=0.648 Sum_probs=242.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCc--ccCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE--YDGL 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~--~~~~ 120 (339)
.+|||++|||+++|+.+|||+|||+||++||||+|+++.|+++|++|++||+|||||+||+.||+||+++++.. +.++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 57999999999999999999999999999999999888899999999999999999999999999999876531 1100
Q ss_pred CCCCC---------CCC-hhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEee
Q 019562 121 SNTSQ---------GVD-PFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSC 190 (339)
Q Consensus 121 ~~~~~---------~~~-~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~ 190 (339)
.+++. +++ ..++|++|||+. + .. ..+..++.|+.++|.|||+|+|+|+++++.+.+
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg-------~-~~------~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~ 148 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN-------K-SD------YQRSTKGQSVSLDIYLTFKELLFGVDKIIELDL 148 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC-------c-cC------CCCcCCCCCeEEEeeccHHHhhCCeeEEEEEee
Confidence 00000 111 124555555421 0 00 112346899999999999999999999999999
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEe
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 270 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~I 270 (339)
.+.|+.|+|+|........+|+.|+|+|.++..++.++.++++..+|+.|.|+|+++.+.|+.|.|.+++.+.++++|.|
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence 99999999999998888899999999999988887766555666899999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCcccc-ccceeEecccChhhhhcCCeEEee
Q 019562 271 PPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRD-GLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 271 p~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~-g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+++|++|+|+|+|++..+++.+|||+|+|++++|+.|+|+ |+||+++++|+|+|||||+++.|+
T Consensus 229 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 229 PKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred CCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee
Confidence 9999999999999999987666789999999999999999995 899999999999999999999987
No 3
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-66 Score=499.60 Aligned_cols=283 Identities=41% Similarity=0.767 Sum_probs=249.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..+|||+||||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|+.||+||+++++.++++..
T Consensus 3 ~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 3 TTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 35799999999999999999999999999999999988889999999999999999999999999999988764321100
Q ss_pred C-CCCCC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCC
Q 019562 122 N-TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (339)
Q Consensus 122 ~-~~~~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G 199 (339)
. ...++ +..++|++|||+.. ... .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~-------~~~------~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G 149 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGG-------RRG------RMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSG 149 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCC-------ccC------CCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCC
Confidence 0 00111 22377888886410 000 012346899999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCE
Q 019562 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (339)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~ 279 (339)
+|........+|+.|+|+|.++..++.++|++++..+|+.|.|+|+++.+.|+.|.|.+++.+.++++|.||||+++|++
T Consensus 150 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 229 (377)
T PRK14298 150 TGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLR 229 (377)
T ss_pred CcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCE
Confidence 99998888899999999999998888888888878999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 280 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|+|++...++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 230 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 287 (377)
T PRK14298 230 LKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP 287 (377)
T ss_pred EEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEe
Confidence 9999999987667789999999999999999999999999999999999999999986
No 4
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.6e-66 Score=496.97 Aligned_cols=281 Identities=37% Similarity=0.769 Sum_probs=249.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~ 122 (339)
..|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||++++..+++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~-- 80 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG-- 80 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC--
Confidence 479999999999999999999999999999999998788999999999999999999999999999998775432111
Q ss_pred CCCCC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCC
Q 019562 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (339)
Q Consensus 123 ~~~~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (339)
+..++ +..|+|++|||+.. + . .. .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~~f~~~~d~f~~~fgg~~---~---~-~~-----~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 148 (371)
T PRK14287 81 GAGDFGGFSDIFDMFFGGGG---G---R-RN-----PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG 148 (371)
T ss_pred CCccccchHHHHHhhhcccc---C---C-CC-----CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc
Confidence 11112 23478888887410 0 0 00 01234689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEE
Q 019562 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~ 281 (339)
........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+.++++|.||||+++|++|+
T Consensus 149 ~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 228 (371)
T PRK14287 149 AKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLR 228 (371)
T ss_pred cCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEE
Confidence 99888889999999999999999999999988899999999999999999999999999989999999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 229 ~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK14287 229 VSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVP 284 (371)
T ss_pred EccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEE
Confidence 99999987666688999999999999999999999999999999999999999986
No 5
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-65 Score=497.59 Aligned_cols=284 Identities=38% Similarity=0.758 Sum_probs=250.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC--
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-- 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~-- 120 (339)
..|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||+++++.++.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 479999999999999999999999999999999998888999999999999999999999999999998876432110
Q ss_pred C-CCC---CC-CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCC
Q 019562 121 S-NTS---QG-VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (339)
Q Consensus 121 ~-~~~---~~-~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~ 195 (339)
+ .++ .+ .+..++|++|||+. ++ ... .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~----~~---~~~-----~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~ 150 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG----GA---RRN-----PNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCH 150 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc----cc---ccC-----cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCC
Confidence 0 111 11 13347888888641 00 000 11234689999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCC
Q 019562 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (339)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~ 275 (339)
.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+.++++|.||+|++
T Consensus 151 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 151 TCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 99999999888889999999999999988999999998899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEeec
Q 019562 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVGY 338 (339)
Q Consensus 276 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~~ 338 (339)
+|++|+|+|+|++...+..+|||+|+|+|++|+.|+|+|+||++++.|+|.|||+|++++|+.
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~t 293 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPT 293 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEc
Confidence 999999999999876666789999999999999999999999999999999999999999863
No 6
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-65 Score=496.49 Aligned_cols=283 Identities=42% Similarity=0.801 Sum_probs=250.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC-
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS- 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~- 121 (339)
..|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++..++.+++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 4799999999999999999999999999999999988889999999999999999999999999999988764321111
Q ss_pred --CCCC-CCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCC
Q 019562 122 --NTSQ-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (339)
Q Consensus 122 --~~~~-~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~ 198 (339)
.++. +++..|+|++|||+. +. . .. .....++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~----~~--~-~~-----~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~ 150 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG----GR--R-RD-----PNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCH 150 (376)
T ss_pred CCCCccccccchhhHHHHhCCc----cc--c-Cc-----ccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCC
Confidence 0111 223457888888641 00 0 00 11234689999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCC
Q 019562 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (339)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~ 278 (339)
|+|.........|+.|+|+|.++..+++++|++++..+|+.|.|+|+++...|+.|.|.+++.+.+.++|.||+|+++|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~ 230 (376)
T PRK14280 151 GSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQ 230 (376)
T ss_pred CcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCc
Confidence 99999888889999999999999888899999988889999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|+|+|+|++...++.+|||||+|+|++|+.|+|+|+||++++.|+|+|||+|+++.|+
T Consensus 231 ~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 289 (376)
T PRK14280 231 QIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVP 289 (376)
T ss_pred EEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 99999999987666788999999999999999999999999999999999999999986
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=2.4e-65 Score=498.08 Aligned_cols=290 Identities=32% Similarity=0.565 Sum_probs=244.8
Q ss_pred cccccccCCCccccccccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCch
Q 019562 21 SFKWNYCSGNNRSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100 (339)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~ 100 (339)
.+.|+.-.+-...|+...-.+...|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 5 GFPFDGMPGGGFDGGRRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPE 81 (421)
T ss_pred cCCcccccCCCCCCCcccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHH
Confidence 34676444444333222223336899999999999999999999999999999999853 589999999999999999
Q ss_pred hhhhhhcccccCcCCcccCCCCCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeec
Q 019562 101 KRSVYDRFGEAGITGEYDGLSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIF 180 (339)
Q Consensus 101 ~r~~yd~~G~~g~~~~~~~~~~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~ 180 (339)
+|++||+||++++.++. ++.++.++|+.|||+. + . .....++.|+.+.|.|||+|+|+
T Consensus 82 kR~~YD~~G~~~~~~~~-------~~~d~~d~f~~~Fggg----~---~--------~~~~~rg~di~~~l~vtLee~~~ 139 (421)
T PTZ00037 82 KRKIYDEYGEEGLEGGE-------QPADASDLFDLIFGGG----R---K--------PGGKKRGEDIVSHLKVTLEQIYN 139 (421)
T ss_pred HHHHHhhhcchhcccCC-------CCcchhhhHHHhhccc----c---c--------cccccCCCCEEEEeeeeHHHHhC
Confidence 99999999998765321 1235568888888641 0 0 01234689999999999999999
Q ss_pred ccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--ecccccCCce
Q 019562 181 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--DHCRRCGGNG 258 (339)
Q Consensus 181 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~g~g 258 (339)
|+++++.+.+.+.|+.|+|+|.... ...+|+.|+|+|.++...+.++.++++..+|+.|.|+|+++. +.|..|.|.+
T Consensus 140 G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g 218 (421)
T PTZ00037 140 GAMRKLAINKDVICANCEGHGGPKD-AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKG 218 (421)
T ss_pred CCceEEEeeccccccccCCCCCCCC-CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcc
Confidence 9999999999999999999998644 578999999999977776665533445579999999999975 8999999999
Q ss_pred EEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 259 EVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 259 ~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++.+.+.++|.||||+.+|++|+|+|+|++.. ++.+|||||+|.+++|+.|+|+|+||++++.|+|+|||||+++.|+
T Consensus 219 ~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 219 VKKTRKILEVNIDKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred eeeeeeEEEEeeCCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence 99999999999999999999999999999864 5789999999999999999999999999999999999999999987
No 8
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-65 Score=492.18 Aligned_cols=283 Identities=37% Similarity=0.636 Sum_probs=247.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~ 122 (339)
.+|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||++|++||+||++....+ ..+++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~-~~~~g 80 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAG-GGGGG 80 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCcccccc-CCCCC
Confidence 37999999999999999999999999999999999887899999999999999999999999999998643211 00000
Q ss_pred CCCCC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCC
Q 019562 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (339)
Q Consensus 123 ~~~~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (339)
...++ +..++|++|||+. + .+. . ......++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 81 ~~~~f~~~~d~f~~ffgg~----g-~~~--~----~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G 149 (378)
T PRK14278 81 FGGGFGGLGDVFEAFFGGG----A-ASR--G----PRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKG 149 (378)
T ss_pred CCcCcCchhHHHHHHhCCC----C-CCC--C----CccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCcc
Confidence 00112 2347888888741 1 000 0 011234689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEE
Q 019562 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~ 281 (339)
........+|+.|+|+|.++..+++.+|++++..+|+.|+|+|+++.+.|+.|.|.+++.+.++++|.||||+++|++|+
T Consensus 150 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~ 229 (378)
T PRK14278 150 TAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIR 229 (378)
T ss_pred CCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEE
Confidence 99888889999999999998888888999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|++...++.+|||+|+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 230 ~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 285 (378)
T PRK14278 230 LAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVE 285 (378)
T ss_pred EccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEe
Confidence 99999987766778999999999999999999999999999999999999999987
No 9
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-65 Score=491.99 Aligned_cols=278 Identities=37% Similarity=0.674 Sum_probs=235.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||++|++||+||++++.... ++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~-~~~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAG-ASQ 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCC-CCc
Confidence 579999999999999999999999999999999997 567999999999999999999999999999998775321 100
Q ss_pred CCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCC
Q 019562 122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (339)
Q Consensus 122 ~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (339)
.++ .+.|+.|++||+.. ||+.+.. . ...+..++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+|+|
T Consensus 81 ~~~--~~~f~~~~~~F~~~---fg~g~~~-~----~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G 150 (369)
T PRK14288 81 SDF--SDFFEDLGSFFEDA---FGFGARG-S----KRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG 150 (369)
T ss_pred ccc--ccchhhHHHHHHhh---cCCCCcc-c----CcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc
Confidence 111 12233333344321 2110000 0 011234689999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEE
Q 019562 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~ 281 (339)
.... ...+|+.|+|+|.++..+ |++++.++|+.|.|+|+++...|+.|.|.+++.+.++++|.||||+++|++|+
T Consensus 151 ~~~~-~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~ 225 (369)
T PRK14288 151 AKDK-ALETCKQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMV 225 (369)
T ss_pred cCCC-CCcCCCCCCCCcEEEEEe----ceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEE
Confidence 9875 678999999999876543 66677789999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|++.. ++.+|||+|+|.|++|+.|+|+|+||+++++|+|+|||||++++|+
T Consensus 226 l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~ 280 (369)
T PRK14288 226 LKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVP 280 (369)
T ss_pred EccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEee
Confidence 999999854 5789999999999999999999999999999999999999999987
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-65 Score=490.93 Aligned_cols=286 Identities=37% Similarity=0.701 Sum_probs=246.7
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~ 119 (339)
...|||++|||+++||.+|||+|||+||++||||+|+. +.++++|++|++||+||+||++|++||+||++++...+.+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~ 81 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE 81 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence 35799999999999999999999999999999999873 5688999999999999999999999999998876532111
Q ss_pred --CCCCC-C----CC-Ch--hhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEe
Q 019562 120 --LSNTS-Q----GV-DP--FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 189 (339)
Q Consensus 120 --~~~~~-~----~~-~~--~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~ 189 (339)
+++++ . .+ +. .++|++|||+.. +. .. ......++.|+.+.|.|||+|+|+|+++++.++
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~------~~--~~---~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~ 150 (369)
T PRK14282 82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERR------TQ--EE---QREYARRGEDIRYEIEVTLSDLINGAEIPVEYD 150 (369)
T ss_pred CCCCCcccccccccccccccchhhhHhhcccC------Cc--cc---ccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEee
Confidence 01110 0 01 11 155666665310 00 00 011235689999999999999999999999999
Q ss_pred eeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEE
Q 019562 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~ 269 (339)
+.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+.++++|.
T Consensus 151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~ 230 (369)
T PRK14282 151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVK 230 (369)
T ss_pred ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEE
Confidence 99999999999999888889999999999999999999999998899999999999999999999999999999999999
Q ss_pred eCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEeec
Q 019562 270 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVGY 338 (339)
Q Consensus 270 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~~ 338 (339)
||||+++|++|+|+|+|++...++.+|||+|+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+-
T Consensus 231 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ 299 (369)
T PRK14282 231 IPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPL 299 (369)
T ss_pred eCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeC
Confidence 999999999999999999876677889999999999999999999999999999999999999999863
No 11
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-64 Score=489.34 Aligned_cols=283 Identities=39% Similarity=0.758 Sum_probs=243.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||++|++||+||+++++.+..+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999988753211111
Q ss_pred -CCCCC-----CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCC
Q 019562 122 -NTSQG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (339)
Q Consensus 122 -~~~~~-----~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~ 195 (339)
+++.+ .+..|+|++|||+..+ + +..++ ......++.|++++|.|||+|+|+|+++++.+++.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~--~--~~~~~----~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~ 154 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRG--G--GSGGG----RRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCV 154 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCcc--C--CCccc----ccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCC
Confidence 11111 1334788888874211 0 00000 011235789999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCC
Q 019562 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (339)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~ 275 (339)
.|+|+|........+|+.|+|+|.++..+ |++++..+|+.|.|+|+++.+.|..|.|.+++.+.+.++|.||||++
T Consensus 155 ~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (372)
T PRK14286 155 DCNGSGASKGSSPTTCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVE 230 (372)
T ss_pred CCcCCCcCCCCCCccCCCCcCeEEEEEEe----ceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCC
Confidence 99999999888889999999999876653 66777789999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 276 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (372)
T PRK14286 231 TGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVP 292 (372)
T ss_pred CCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEe
Confidence 99999999999987766678999999999999999999999999999999999999999986
No 12
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-64 Score=491.07 Aligned_cols=288 Identities=42% Similarity=0.785 Sum_probs=249.2
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCc-cc
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE-YD 118 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~-~~ 118 (339)
++..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||+||+++++.+ +.
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14277 2 AAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFG 81 (386)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccc
Confidence 34579999999999999999999999999999999997 46789999999999999999999999999999877532 11
Q ss_pred CCC---CCC--CC-----CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEE
Q 019562 119 GLS---NTS--QG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEV 188 (339)
Q Consensus 119 ~~~---~~~--~~-----~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~ 188 (339)
.++ +++ .+ .+..++|++||+++ ||+.+. . ......++.|+.++|.|||+|+|+|+++++.+
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~---fgg~~~---~---~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~ 152 (386)
T PRK14277 82 QGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF---FGTGRR---R---AETGPQKGADIRYDLELTFEEAAFGTEKEIEV 152 (386)
T ss_pred cCCcCCCCccccCccccccchhHHHHHhhccc---ccCCCc---C---CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEE
Confidence 100 110 00 12236788888642 321100 0 01123468999999999999999999999999
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEE
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKV 268 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v 268 (339)
++.+.|+.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+.+.++|
T Consensus 153 ~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 232 (386)
T PRK14277 153 ERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKV 232 (386)
T ss_pred EeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEE
Confidence 99999999999999988888999999999999999999999998889999999999999999999999999999999999
Q ss_pred EeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 269 VIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 269 ~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
.||||+++|++|+|+|+|++...+..+|||+|+|+|++|+.|+|+|+||++++.|+|+|||+|+++.|+
T Consensus 233 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 301 (386)
T PRK14277 233 NIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIP 301 (386)
T ss_pred ecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEE
Confidence 999999999999999999986656678999999999999999999999999999999999999999986
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-64 Score=487.44 Aligned_cols=285 Identities=39% Similarity=0.762 Sum_probs=248.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+||+++++.+...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 479999999999999999999999999999999997 4678999999999999999999999999999988753211000
Q ss_pred CCCCC------CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCC
Q 019562 122 NTSQG------VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (339)
Q Consensus 122 ~~~~~------~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~ 195 (339)
+++++ .+..++|++|||+. +++.+ .. .....++.|++++|.|||+|+|+|+++++.+.+.+.|+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~---~g~~~----~~---~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 152 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG---FGSSS----RR---RNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCE 152 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC---ccccc----cc---cCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCC
Confidence 11111 12347889998741 11100 00 01234689999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCC
Q 019562 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (339)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~ 275 (339)
.|+|+|........+|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+..+++|.||||++
T Consensus 153 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 153 TCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 99999999888889999999999999888899999888899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 276 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|++|+|+|+|++...+..+|||||+|+|++|+.|+|+|+||++++.|+|+|||+|++++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~ 294 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVP 294 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEE
Confidence 99999999999987666678999999999999999999999999999999999999999986
No 14
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-64 Score=482.18 Aligned_cols=280 Identities=34% Similarity=0.692 Sum_probs=241.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCccc--C
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD--G 119 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~--~ 119 (339)
.+|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||+||+++++.+.. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 479999999999999999999999999999999997 4678899999999999999999999999999987753211 1
Q ss_pred CCCCCCC-----CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeC
Q 019562 120 LSNTSQG-----VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETC 194 (339)
Q Consensus 120 ~~~~~~~-----~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C 194 (339)
..+++.+ .+..++|++|||+.. + ... .....++.|+.++|.|||||+|+|+++++.+++.+.|
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~---~~~------~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C 149 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---G---QDK------NRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLC 149 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---C---CCC------CcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccC
Confidence 0011111 123367888886410 0 000 1123468999999999999999999999999999999
Q ss_pred CCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCC
Q 019562 195 DSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGV 274 (339)
Q Consensus 195 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~ 274 (339)
+.|+|+|.........|+.|+|+|.++. .+|++++..+|+.|.|+|+++.+.|..|.|.+++.+.+.++|.||||+
T Consensus 150 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~----~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~ 225 (365)
T PRK14285 150 ESCLGKKSEKGTSPSICNMCNGSGRVMQ----GGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGI 225 (365)
T ss_pred CCCCCcccCCCCCCccCCCccCceeEEe----cCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCC
Confidence 9999999998888899999999998764 347777778999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEeec
Q 019562 275 SNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVGY 338 (339)
Q Consensus 275 ~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~~ 338 (339)
++|++|+|+|+|++..+++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|++++|+-
T Consensus 226 ~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~t 289 (365)
T PRK14285 226 DDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQT 289 (365)
T ss_pred CCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEEC
Confidence 9999999999999877667789999999999999999999999999999999999999999873
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-63 Score=484.58 Aligned_cols=283 Identities=35% Similarity=0.647 Sum_probs=235.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC--
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-- 119 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~-- 119 (339)
.+|||++|||+++|+.+|||+|||+||++||||+|+ ++.++++|++|++||+|||||+||++||+||+++...++.+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 479999999999999999999999999999999997 56789999999999999999999999999997533211110
Q ss_pred ---CC--CCC------CCCChhhhhcc-----------ccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceee
Q 019562 120 ---LS--NTS------QGVDPFELYSA-----------FFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEE 177 (339)
Q Consensus 120 ---~~--~~~------~~~~~~~~f~~-----------fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee 177 (339)
++ +++ .+++..++|+. +|++ +|++.+ ++. ......++.|+.++|.|||+|
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~---~fg~~~--~~~---~~~~~~~g~di~~~l~ltLee 159 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGG---LFNRGG--GSA---RPSRPRRGNDLETETTLDFVE 159 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhh---hhcCCC--ccc---ccCCCCCCCCeEEEEEEEHHH
Confidence 00 010 01222223321 1111 111100 000 011234689999999999999
Q ss_pred eecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCc
Q 019562 178 SIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (339)
Q Consensus 178 ~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (339)
+|+|+++++.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ +++++..+|+.|.|+|+++.+.|..|.|.
T Consensus 160 ~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~i~~~C~~C~G~ 235 (392)
T PRK14279 160 AAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ----GAFGFSEPCTDCRGTGSIIEDPCEECKGT 235 (392)
T ss_pred HhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe----cceEEEEecCCCCceeEEeCCcCCCCCCC
Confidence 99999999999999999999999999888889999999999876653 55666789999999999999999999999
Q ss_pred eEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 258 GEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 258 g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+++.+.+.++|.||||+++|++|+|+|+|++..++..+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 236 g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 315 (392)
T PRK14279 236 GVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVP 315 (392)
T ss_pred eEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEE
Confidence 99999999999999999999999999999987766778999999999999999999999999999999999999999986
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-63 Score=483.81 Aligned_cols=282 Identities=39% Similarity=0.706 Sum_probs=237.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC-CC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG-LS 121 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~-~~ 121 (339)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+|+++|++||+||++++..+... ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 48999999999999999999999999999999997 46789999999999999999999999999999876422110 00
Q ss_pred CCCCC-CCh---------------hhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEE
Q 019562 122 NTSQG-VDP---------------FELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRG 185 (339)
Q Consensus 122 ~~~~~-~~~---------------~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~ 185 (339)
.++.+ .++ .++|++||++..+.|++ .. ......++.|+.++|.|||||+|+|++++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-----~~---~~~~~~~g~d~~~~l~vslee~~~G~~~~ 152 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-----RG---GPAGARQGASKKVHITLSFEEAAKGVEKE 152 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-----cc---cCCCcCCCCCeEEEEEEEHHHHhCCeeEE
Confidence 11111 011 24455555421101110 00 01123468899999999999999999999
Q ss_pred EEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceE
Q 019562 186 IEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRS 265 (339)
Q Consensus 186 v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~ 265 (339)
+.+.+.+.|+.|+|+|........+|+.|+|+|.++..+ |++++..+|+.|+|+|+++.+.|+.|.|.+++.+.++
T Consensus 153 i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~ 228 (391)
T PRK14284 153 LLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRS 228 (391)
T ss_pred EEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEE
Confidence 999999999999999999888889999999999877543 6677778999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 266 MKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 266 l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++|.||||+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 229 l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 300 (391)
T PRK14284 229 VHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIP 300 (391)
T ss_pred EEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEe
Confidence 999999999999999999999998777889999999999999999999999999999999999999999986
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.5e-63 Score=476.35 Aligned_cols=282 Identities=39% Similarity=0.720 Sum_probs=240.8
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~ 120 (339)
..+|||++|||+++||.+|||+|||+||++||||+++ ++.++++|++|++||+||+||.+|++||+||+++++.+..++
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~ 81 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG 81 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence 3579999999999999999999999999999999997 467899999999999999999999999999998875321110
Q ss_pred CCCCC-CC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCC
Q 019562 121 SNTSQ-GV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (339)
Q Consensus 121 ~~~~~-~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~ 198 (339)
.+++. .+ +..|+|++|||. ++.+. +. ......++.|+.++|.|||+|+|+|+++++.+.+.+.|+.|+
T Consensus 82 ~~~~~~~~~~~~d~f~~~fg~-----g~~~~--~~---~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~ 151 (366)
T PRK14294 82 FSGFDDIFSSFGDIFEDFFGF-----GGGRR--GR---SRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECH 151 (366)
T ss_pred cCccccchhhhhhhHHHhhcc-----CCCcC--Cc---ccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCC
Confidence 01111 01 123677777761 10000 00 001234689999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCC
Q 019562 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (339)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~ 278 (339)
|+|.........|+.|+|+|.++... |++++..+|+.|.|+|+++.+.|+.|.|.+++.+.+.++|.||||+++|+
T Consensus 152 G~G~~~~~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 152 GSGCEPGTSPTTCPQCGGSGQVTQSQ----GFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred CccccCCCCcccCCCcCCeEEEEEEe----eeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 99999888889999999999876532 66776789999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|+|+|+|++...++.+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 228 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 286 (366)
T PRK14294 228 RLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP 286 (366)
T ss_pred EEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEE
Confidence 99999999987667789999999999999999999999999999999999999999987
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-62 Score=477.27 Aligned_cols=284 Identities=41% Similarity=0.688 Sum_probs=237.4
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhc----ccccCcCCc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDR----FGEAGITGE 116 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~----~G~~g~~~~ 116 (339)
+..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|++||+ ||++++..+
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 3579999999999999999999999999999999987 45789999999999999999999999999 998877532
Q ss_pred ccCCCCCCCCCChhhhhccccCCC-------------CCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccE
Q 019562 117 YDGLSNTSQGVDPFELYSAFFGGS-------------DGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQ 183 (339)
Q Consensus 117 ~~~~~~~~~~~~~~~~f~~fFg~~-------------~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~ 183 (339)
..+++.+...+++.++|..++++. .++|++ + + ......++.|+.++|.|||||+|+|++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-~---~----~~~~~~~g~di~~~l~lsLee~~~G~~ 158 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-G---G----RRTQPRRGADVESEVTLSFTEAIDGAT 158 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-C---C----CCCCCCCCCCEEEEEEEEHHHHhCCce
Confidence 110000000123333333221100 001111 0 0 011234689999999999999999999
Q ss_pred EEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeec
Q 019562 184 RGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSK 263 (339)
Q Consensus 184 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~ 263 (339)
++|.+++.+.|+.|+|+|........+|+.|+|+|.++..+ |++++..+|+.|.|+|+++.+.|..|.|.+++.+.
T Consensus 159 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~ 234 (389)
T PRK14295 159 VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS----GGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSS 234 (389)
T ss_pred EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe----cceEEEEecCCCcceeEEeccCCCCCCCCceEeee
Confidence 99999999999999999999888889999999999887654 55666689999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 264 ~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+.++|.||+|+++|++|+|+|+|++...+..+|||+|+|.|++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 235 ~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 308 (389)
T PRK14295 235 RTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVP 308 (389)
T ss_pred eEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEE
Confidence 99999999999999999999999987666778999999999999999999999999999999999999999986
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-62 Score=477.93 Aligned_cols=294 Identities=37% Similarity=0.678 Sum_probs=245.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCccc-CC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GL 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~-~~ 120 (339)
..|||+||||+++|+.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||+||+++++.... ++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 479999999999999999999999999999999997 4578899999999999999999999999999987753211 11
Q ss_pred CCCC--CCCChhhh---hccccCCCCCC-----CCCCCCCCCccccCC-CCCCCCcceEEEEeeceeeeecccEEEEEEe
Q 019562 121 SNTS--QGVDPFEL---YSAFFGGSDGL-----FGGVGEAGGINFNFG-NKGNFGLDIRYDLHLSFEESIFGGQRGIEVS 189 (339)
Q Consensus 121 ~~~~--~~~~~~~~---f~~fFg~~~~~-----fg~~g~~~~~~~~~~-~~~~~g~di~~~l~lslee~~~G~~~~v~~~ 189 (339)
+.++ .+.+..++ |++|||+..++ ++..+..++...... ....++.|+.++|.|||||+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 1111 11222333 45788752110 000000000000000 1124688999999999999999999999999
Q ss_pred eeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEE
Q 019562 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV 269 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~ 269 (339)
+.+.|+.|+|+|.... ...+|+.|+|+|.++..+++.+|++++..+|+.|.|+|+++.+.|+.|.|.+++...++++|.
T Consensus 162 r~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 240 (397)
T PRK14281 162 KQVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVT 240 (397)
T ss_pred eeecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEe
Confidence 9999999999999876 578999999999999888899999888899999999999999999999999999999999999
Q ss_pred eCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 270 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 270 Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
||||+++|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 241 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 308 (397)
T PRK14281 241 VPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVP 308 (397)
T ss_pred cCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEee
Confidence 99999999999999999987666789999999999999999999999999999999999999999987
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.4e-63 Score=476.95 Aligned_cols=278 Identities=39% Similarity=0.745 Sum_probs=238.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||+||+||.+|+.||+||+++++++.. .
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~--~ 80 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGG--F 80 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCC--C
Confidence 579999999999999999999999999999999997 4668899999999999999999999999999988753211 0
Q ss_pred CCCCC----CChh-hhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCC
Q 019562 122 NTSQG----VDPF-ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDS 196 (339)
Q Consensus 122 ~~~~~----~~~~-~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~ 196 (339)
+++.+ ++.| ++|++|||. ++.+.. ...+..++.|+.++|.|||+|+|+|+++++.+.+.+.|+.
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~-----g~~~~~------~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~ 149 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGF-----SGGGSR------RGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDD 149 (373)
T ss_pred CCcccccccccchHHHHHHHhhc-----cCcccc------cCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCC
Confidence 11111 1122 455555541 110000 0112357899999999999999999999999999999999
Q ss_pred CCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCC
Q 019562 197 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 276 (339)
Q Consensus 197 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~ 276 (339)
|+|+|........+|+.|+|+|.++..+ |++++..+|+.|.|+|+++...|+.|.|.+++.+.+.++|.||||+++
T Consensus 150 C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 225 (373)
T PRK14301 150 CGGSGAAPGTSPETCRHCGGSGQVRQSQ----GFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDT 225 (373)
T ss_pred CCCcccCCCCCCcccCCccCeeEEEEEe----eeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcC
Confidence 9999999888889999999999876543 667777899999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 277 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 277 G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|++|+|+|+|++...++.+|||||+|.|++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 226 G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~ 286 (373)
T PRK14301 226 GSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVP 286 (373)
T ss_pred CCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEe
Confidence 9999999999987666778999999999999999999999999999999999999999986
No 21
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.5e-62 Score=472.71 Aligned_cols=283 Identities=45% Similarity=0.817 Sum_probs=248.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCCCC
Q 019562 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (339)
Q Consensus 45 d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~~~ 124 (339)
|||++|||+++|+.+|||+|||+||++||||+++++.++++|++|++||+||+|+.+|++||+||++++..+..+.++++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999987789999999999999999999999999999987753211101111
Q ss_pred C-----CC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCC
Q 019562 125 Q-----GV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (339)
Q Consensus 125 ~-----~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~ 198 (339)
. ++ +..++|++|||+.. ++ +. . ......++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~---g~-~~--~----~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 150 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG---GS-GR--R----RRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCH 150 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc---cc-Cc--c----ccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCC
Confidence 1 11 23477888887421 10 00 0 011235689999999999999999999999999999999999
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCC
Q 019562 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (339)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~ 278 (339)
|+|.........|+.|+|+|.++..+++++|++++..+|+.|.|+|+++...|+.|.|.+++.+.+.++|.||||+++|+
T Consensus 151 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 230 (354)
T TIGR02349 151 GTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQ 230 (354)
T ss_pred CCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCC
Confidence 99999888889999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|+|+|+|++...+..+|||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 231 ~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~ 289 (354)
T TIGR02349 231 RLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP 289 (354)
T ss_pred EEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 99999999986666778999999999999999999999999999999999999999885
No 22
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-62 Score=475.28 Aligned_cols=289 Identities=38% Similarity=0.670 Sum_probs=242.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC--C
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG--L 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~--~ 120 (339)
.+|||++|||+++|+.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++...... +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 47999999999999999999999999999999999888899999999999999999999999999999876532111 0
Q ss_pred CCCC---CCCChhhhhccccCCC--CCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCC
Q 019562 121 SNTS---QGVDPFELYSAFFGGS--DGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCD 195 (339)
Q Consensus 121 ~~~~---~~~~~~~~f~~fFg~~--~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~ 195 (339)
..++ .+.+..++|++||+.+ .+.|++.+.+.+... ......++.|+.++|.|||+|+|+|+++++.+++.+.|+
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRK-TYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhcccccccccccccccccc-ccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 0111 1224457788775422 112222111000000 011234689999999999999999999999999999999
Q ss_pred CCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCC
Q 019562 196 SCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVS 275 (339)
Q Consensus 196 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~ 275 (339)
.|+|+|.........|+.|+|+|.++.. .+++++..+|+.|+|+|. +.+.|..|.|.+++.+.++++|.||||++
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQR----GGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVD 235 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEe----cceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCC
Confidence 9999999988888999999999987664 256666789999999995 68899999999999999999999999999
Q ss_pred CCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 276 NGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 276 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|++|+|+|+|++...++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 236 ~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~ 297 (382)
T PRK14291 236 NGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVP 297 (382)
T ss_pred CCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEe
Confidence 99999999999987767889999999999999999999999999999999999999999986
No 23
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-62 Score=472.35 Aligned_cols=292 Identities=38% Similarity=0.713 Sum_probs=245.0
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~ 119 (339)
|+...|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||+||++++.. +..
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~-~~~ 79 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDG-FSQ 79 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccc-ccc
Confidence 3457899999999999999999999999999999999988889999999999999999999999999999987652 111
Q ss_pred CCCCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCC
Q 019562 120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (339)
Q Consensus 120 ~~~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G 199 (339)
. ..+...+..++|..|++++...|..++..++. .....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|.|
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~----~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G 154 (378)
T PRK14283 80 E-DIFNNINFEDIFQGFGFGIGNIFDMFGFGGGS----RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNG 154 (378)
T ss_pred c-ccccccCccccccccccchhhhccccccCCCC----CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCc
Confidence 0 00001111222222221110111100000000 011346889999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCE
Q 019562 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (339)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~ 279 (339)
+|.........|+.|+|+|.++..++..+|++++..+|+.|.|+|+.+.+.|..|.|.+++.+.+.++|.||||+++|++
T Consensus 155 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~ 234 (378)
T PRK14283 155 SRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSR 234 (378)
T ss_pred cccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcE
Confidence 99998888899999999999999888889998888999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 280 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|+|++...++.+|||+|+|.|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus 235 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (378)
T PRK14283 235 LRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVP 292 (378)
T ss_pred EEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEE
Confidence 9999999987666789999999999999999999999999999999999999999986
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.2e-62 Score=470.82 Aligned_cols=279 Identities=42% Similarity=0.803 Sum_probs=237.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~ 120 (339)
+..|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+|+.+|+.||+||++++..+..++
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~ 81 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG 81 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence 3579999999999999999999999999999999997 466889999999999999999999999999998775321110
Q ss_pred C-CCCCCC-Chh-hhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCC
Q 019562 121 S-NTSQGV-DPF-ELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (339)
Q Consensus 121 ~-~~~~~~-~~~-~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C 197 (339)
+ .++.++ +.| ++|+.|||+. .+ .. .....++.|+.++|.|||||+|+|+++++.+++.+.|+.|
T Consensus 82 ~~~~~~~~~~~f~~~f~~~fgg~------~~--~~-----~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C 148 (371)
T PRK10767 82 GFGGGGGFGDIFGDIFGDIFGGG------RG--GG-----RQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTC 148 (371)
T ss_pred CCCCccccccchhhhhhhhccCC------cc--cc-----CCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCC
Confidence 0 010111 212 3444444320 00 00 1123578999999999999999999999999999999999
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCC
Q 019562 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (339)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G 277 (339)
+|+|.........|+.|+|+|.++..+ |++++..+|+.|.|+|+++.+.|+.|.|.+++.+...++|.||||+++|
T Consensus 149 ~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 224 (371)
T PRK10767 149 HGSGAKPGTSPKTCPTCHGAGQVRMQQ----GFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTG 224 (371)
T ss_pred CCcccCCCCCCccCCCCCCeeEEEEee----ceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCC
Confidence 999999888888999999999876543 6666668999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++|+|+|+|++..+++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|++++|+
T Consensus 225 ~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK10767 225 DRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVP 284 (371)
T ss_pred cEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 999999999987666789999999999999999999999999999999999999999985
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-61 Score=470.60 Aligned_cols=294 Identities=38% Similarity=0.679 Sum_probs=247.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~ 120 (339)
...|||++|||+++||.+|||+|||+||++||||+|+ ++.++++|++|++||++|+||.+|++||+||+++++.+...+
T Consensus 3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~ 82 (386)
T PRK14289 3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG 82 (386)
T ss_pred ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence 4689999999999999999999999999999999997 457999999999999999999999999999998775321111
Q ss_pred CCCCCCCChhhhhcc---ccCCCCCCCCCCCCCCCcccc-CCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCC
Q 019562 121 SNTSQGVDPFELYSA---FFGGSDGLFGGVGEAGGINFN-FGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDS 196 (339)
Q Consensus 121 ~~~~~~~~~~~~f~~---fFg~~~~~fg~~g~~~~~~~~-~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~ 196 (339)
+.+..++++.++|+. +|++. |++.++.+.+... ......++.|+++.|.|||+|+|+|+++++.+++.+.|+.
T Consensus 83 ~~~~~~~~~~~~f~~f~~~fg~~---~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 159 (386)
T PRK14289 83 GFSGEGMSMEDIFSMFGDIFGGH---GGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSH 159 (386)
T ss_pred CCCCCCcChhhhhHHhhhhhccc---ccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCC
Confidence 001112333344433 35432 1111100000000 0112346889999999999999999999999999999999
Q ss_pred CCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCC
Q 019562 197 CGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSN 276 (339)
Q Consensus 197 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~ 276 (339)
|+|+|.........|+.|+|+|.++..+++++|++++..+|+.|.|+|+++...|..|.|.+++.+.+.++|.||+|+++
T Consensus 160 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 239 (386)
T PRK14289 160 CHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAE 239 (386)
T ss_pred CCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCC
Confidence 99999998888899999999999999889999999888999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEeec
Q 019562 277 GATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVGY 338 (339)
Q Consensus 277 G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~~ 338 (339)
|++|+|+|+|++...++.+|||+|+|+|++|+.|.|+++||++++.|+|.+||+|+++.|+.
T Consensus 240 G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ 301 (386)
T PRK14289 240 GMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPT 301 (386)
T ss_pred CCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeec
Confidence 99999999999876667899999999999999999999999999999999999999999873
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-61 Score=464.19 Aligned_cols=284 Identities=35% Similarity=0.657 Sum_probs=237.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
.|||++|||+++||.+|||+|||+||++||||+++.. .++++|++|++||++|+|+.+|++||+||+++++.+..+.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 6999999999999999999999999999999999743 68899999999999999999999999999987752110000
Q ss_pred -CCCC-CCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCC
Q 019562 122 -NTSQ-GVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (339)
Q Consensus 122 -~~~~-~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G 199 (339)
.++. ..++.++|+.|||+. +++.. .++... ....+.++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~---~~~~~-~~~~~~-~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGN---FGSDF-FSGFGN-QQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccchhHHHHHHhcCc---ccccc-cccccc-ccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 0011 124568899998752 11000 000000 0111234789999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcce--eeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCC
Q 019562 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI--SQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (339)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~--~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G 277 (339)
+|.... ...+|+.|+|+|.++..+. +|++ ++..+|+.|.|+|+++.+.|+.|.|.+++.+.+.++|.||||+.+|
T Consensus 158 ~g~~~~-~~~~C~~C~G~G~~~~~~~--~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 234 (365)
T PRK14290 158 TGAKNG-KLITCPTCHGTGQQRIVRG--QGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDN 234 (365)
T ss_pred ccCCCC-CCccCCCCCCcCEEEEEec--cCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCC
Confidence 999875 5789999999998776653 4444 3357999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++|+|+|+|+. .++.+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 235 ~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 292 (365)
T PRK14290 235 LRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK 292 (365)
T ss_pred cEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEE
Confidence 99999999986 46789999999999999999999999999999999999999999986
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-61 Score=465.79 Aligned_cols=284 Identities=35% Similarity=0.685 Sum_probs=242.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCccc-CCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD-GLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~-~~~ 121 (339)
..|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||+||++++..... +++
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 3799999999999999999999999999999999987789999999999999999999999999999987753210 111
Q ss_pred CCCCCC--ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCC
Q 019562 122 NTSQGV--DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (339)
Q Consensus 122 ~~~~~~--~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G 199 (339)
++.+++ +..++|++||+++ |++.+. . .......++.|+.+.|.|||+|+|+|+++++.+.+.+.|+.|+|
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~---~gg~~~---~--~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G 153 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDF---MGGSRR---S--RPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHG 153 (372)
T ss_pred CCCCccccchhhhHHHHHHhh---cCCCCC---C--CCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCC
Confidence 111111 2335677777642 221110 0 00011246889999999999999999999999999999999999
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCE
Q 019562 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGAT 279 (339)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~ 279 (339)
+|........+|+.|+|+|.++.. .|++++..+|+.|.|+|+++.+.|+.|.|.+++.+.+.++|.||||+++|++
T Consensus 154 ~g~~~~~~~~~C~~C~G~G~~~~~----~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 229 (372)
T PRK14300 154 SGSEKGETVTTCDACSGVGATRMQ----QGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTR 229 (372)
T ss_pred cccCCCCCCccCCCccCeEEEEEe----eceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcE
Confidence 999988888999999999987653 3677777899999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEeec
Q 019562 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVGY 338 (339)
Q Consensus 280 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~~ 338 (339)
|+|+|+|++...++.+|||+|+|.+++|+.|+|+|+||++++.|+|++||+|+++.|+-
T Consensus 230 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ 288 (372)
T PRK14300 230 IRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPV 288 (372)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEec
Confidence 99999999876667899999999999999999999999999999999999999999863
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-60 Score=460.76 Aligned_cols=287 Identities=44% Similarity=0.847 Sum_probs=248.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~ 122 (339)
..|||+||||+++||.+|||+|||+||++||||+|+++.++++|++|++||+||+||.+|++||.||++++..+.. ..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~--~~ 79 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAG--FP 79 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCC--cC
Confidence 3699999999999999999999999999999999988889999999999999999999999999999987753210 00
Q ss_pred CCCCC-ChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCC
Q 019562 123 TSQGV-DPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (339)
Q Consensus 123 ~~~~~-~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (339)
+..++ +..++|++||+++. +.+..+ .... .....++.|+.++|.|||+|+|+|+++++.+++.+.|+.|+|+|
T Consensus 80 ~~~~~~~~~d~f~~~fg~~~----~~~~~~-~~~~-~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G 153 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGFG----GAGGQG-GRRR-RRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG 153 (374)
T ss_pred CcccccchHHHHHHHhcccC----CCCCCC-cccc-ccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC
Confidence 11111 22378888887421 111000 0000 11234688999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEE
Q 019562 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~ 281 (339)
.........|+.|+|+|.++..+++++|++++..+|+.|.|+|+++.+.|..|.|.+++.+.+.++|.||||+++|++|+
T Consensus 154 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~ 233 (374)
T PRK14293 154 AKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLR 233 (374)
T ss_pred CCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEE
Confidence 99888889999999999999888999999988899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
|+|+|++..++..+|||||+|+|++|+.|+|+|+||+++++|+|.|||+|+++.|+
T Consensus 234 l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~ 289 (374)
T PRK14293 234 VSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVD 289 (374)
T ss_pred EccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEec
Confidence 99999986656678999999999999999999999999999999999999999986
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-60 Score=459.58 Aligned_cols=282 Identities=36% Similarity=0.687 Sum_probs=244.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCCC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNT 123 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~~ 123 (339)
.|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||+||+||.+|+.||+||+++..+...++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 49999999999999999999999999999999998888999999999999999999999999999987642110010001
Q ss_pred CCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCcc
Q 019562 124 SQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAK 203 (339)
Q Consensus 124 ~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~ 203 (339)
..++|+.++|++|||+.. +++ .. + .....++.|+.+++.|||+|+|+|+++++.+++.+.|+.|+|+|..
T Consensus 82 ~~~~d~~d~f~~~fg~~~--~~~--~~-~-----~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~ 151 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAG--FGG--GR-G-----RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTE 151 (371)
T ss_pred ccCCChHHHHHHhhCCCC--cCC--CC-C-----cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccC
Confidence 112567789999997521 110 00 0 0123468999999999999999999999999999999999999997
Q ss_pred CCC-CcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEE
Q 019562 204 SSN-CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQI 282 (339)
Q Consensus 204 ~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l 282 (339)
... ...+|+.|+|+|.++..+++.+|++++..+|+.|.|+|+.+...|..|.|.+++.....++|.||+|+.+|++|+|
T Consensus 152 ~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 231 (371)
T PRK14292 152 PGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRV 231 (371)
T ss_pred CCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEE
Confidence 654 3789999999999988888888998888899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 283 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|+|++... +. |||||+|.+++|+.|+|+|+||++++.|+|.|||+|+++.|+
T Consensus 232 ~G~G~~~~~-~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~ 284 (371)
T PRK14292 232 AGMGNEGPG-GN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVP 284 (371)
T ss_pred ecCcCCCCC-CC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEE
Confidence 999998643 33 999999999999999999999999999999999999999987
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-57 Score=418.63 Aligned_cols=270 Identities=36% Similarity=0.672 Sum_probs=238.4
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
.+..||++|||+++||++|||||||+||++||||+|++ +.++|++|++||||||||++|++||+||+++++.+..+++
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g 79 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG 79 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC
Confidence 35789999999999999999999999999999999965 8899999999999999999999999999999865432211
Q ss_pred CCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCC
Q 019562 122 NTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTG 201 (339)
Q Consensus 122 ~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G 201 (339)
+. . |++||+ ||+.++ +.+.++.|+.+.|.|||+|+|.|.++++.+++..+|+.|.|+|
T Consensus 80 --~~--~----f~~~F~-----~g~~~~---------~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG 137 (337)
T KOG0712|consen 80 --FG--G----FSQFFG-----FGGNGG---------RGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG 137 (337)
T ss_pred --Cc--c----HHHhcc-----CCCcCc---------cccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC
Confidence 11 1 788887 222211 1223499999999999999999999999999999999999999
Q ss_pred ccCCCCcccCCCCCCccEEEEeeecCCcceeee-ecCCCCCCccEE--EeecccccCCceEEeeceEEEEEeCCCCCCCC
Q 019562 202 AKSSNCIQSCKACWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKI--IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (339)
Q Consensus 202 ~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~--~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~ 278 (339)
....... .|+.|.|+|..+...++.+|+.++. ..|..|+|+|.. ..+.|+.|.|.+++...+.++|.|++|+++++
T Consensus 138 gksg~~~-~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ 216 (337)
T KOG0712|consen 138 GKSGSAP-KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQ 216 (337)
T ss_pred CCCCCCC-CCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccc
Confidence 9876544 8999999999999999999988887 689999999997 57899999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|++.|++++.. +..+||++|.|..+.|+.|.|.++||+++.+|+|.|||+|+.+.+.
T Consensus 217 ki~f~geadea~-g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~ 274 (337)
T KOG0712|consen 217 KITFKGEADEAP-GTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWE 274 (337)
T ss_pred eeeeeeeeeecC-CCcCccEEEEecccccccceecccccceeeecchhhccccceEEEE
Confidence 999999999865 4559999999999999999999999999999999999999887664
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.5e-45 Score=342.82 Aligned_cols=212 Identities=39% Similarity=0.703 Sum_probs=170.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC--
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL-- 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~-- 120 (339)
..|||++|||+++||.+|||+|||+||++||||+|+++.++++|++|++||++|+||++|+.||+||++++..++.+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 579999999999999999999999999999999998888999999999999999999999999999987654221110
Q ss_pred ----CCCCCC---CChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeee
Q 019562 121 ----SNTSQG---VDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFET 193 (339)
Q Consensus 121 ----~~~~~~---~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~ 193 (339)
..++.+ .+..++|++|||+.+ .+++.+ ...........++.|+.+++.|||+|++.|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~-~~~~~g---~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~---- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRG-GFGGFG---DLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA---- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCC-CCCCcc---cccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC----
Confidence 011111 234478888887421 111110 00000011235688999999999999999999887542
Q ss_pred CCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCC
Q 019562 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG 273 (339)
Q Consensus 194 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G 273 (339)
.+.++|.||||
T Consensus 155 ---------------------------------------------------------------------g~~~~V~Ip~G 165 (291)
T PRK14299 155 ---------------------------------------------------------------------GERLSVRIPPG 165 (291)
T ss_pred ---------------------------------------------------------------------CEEEEEecCCC
Confidence 13578999999
Q ss_pred CCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 274 VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 274 ~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+++|++|+++|+|++. |||+|+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus 166 ~~~G~~ir~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~ 223 (291)
T PRK14299 166 VREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVM 223 (291)
T ss_pred cCCCcEEEECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEE
Confidence 9999999999999862 999999999999999999999999999999999999999986
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=9.3e-44 Score=335.56 Aligned_cols=223 Identities=30% Similarity=0.513 Sum_probs=176.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccC----cCCcccC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG----ITGEYDG 119 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g----~~~~~~~ 119 (339)
.|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+||+.+ +......
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~ 83 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQH 83 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccccc
Confidence 799999999999999999999999999999999988889999999999999999999999999998642 2211000
Q ss_pred CCC-CCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCC
Q 019562 120 LSN-TSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCG 198 (339)
Q Consensus 120 ~~~-~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~ 198 (339)
+++ .....+..++|+.|||+. ++ .. . .....++.|+.+++.|||+|+++|+.+++.+++.. |
T Consensus 84 ~~~~~~~~~~~~~~f~~~~g~~----~~--~~--~----~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~----~- 146 (306)
T PRK10266 84 GDGQSFNAEDFDDIFSSIFGQH----AR--QS--R----QRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV----Y- 146 (306)
T ss_pred CCCCCCCCCCHHHHHHHHhCCC----CC--CC--C----CCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc----c-
Confidence 001 111124457888888641 10 00 0 01234688999999999999999999998876431 1
Q ss_pred CCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCC
Q 019562 199 GTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGA 278 (339)
Q Consensus 199 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~ 278 (339)
.|.|.+.. ...+.++|.||+|+++|+
T Consensus 147 ----------------~g~G~~~~--------------------------------------~~~~~~~V~Ip~G~~~G~ 172 (306)
T PRK10266 147 ----------------NAFGMIEQ--------------------------------------EIPKTLNVKIPAGVGNGQ 172 (306)
T ss_pred ----------------cCCCeEEE--------------------------------------eeeEEEEEEECCCCcCCc
Confidence 12221100 113578999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
+|+|+|+|++...+..+|||+|+|.|++|+.|+|+|+||++++.|+|.+||+|+++.|+
T Consensus 173 ~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~ 231 (306)
T PRK10266 173 RIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVP 231 (306)
T ss_pred EEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEee
Confidence 99999999987666778999999999999999999999999999999999999999986
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-42 Score=317.97 Aligned_cols=245 Identities=43% Similarity=0.796 Sum_probs=217.9
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCCCC
Q 019562 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSNTS 124 (339)
Q Consensus 45 d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~~~ 124 (339)
|||++|||+++|+..|||+||++||++||||.|.++++.++|++|.+|||+|+|+++|+.||.+|..+. . .
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~--------~-~ 114 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQH--------G-E 114 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcc--------c-c
Confidence 999999999999999999999999999999999999999999999999999999999999999998751 0 1
Q ss_pred CCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccC
Q 019562 125 QGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKS 204 (339)
Q Consensus 125 ~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~ 204 (339)
.+.+++++|..+|++. ..+...+.+..+.+.++|++|..|..+.+.+.....|..|.|.|...
T Consensus 115 ~~g~~~~~~~~~~~~~-----------------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~ 177 (288)
T KOG0715|consen 115 FGGNPFDVFLEFFGGK-----------------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEE 177 (288)
T ss_pred ccCCccchHHHhhccc-----------------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccc
Confidence 1227788888888650 11234567888889999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEcc
Q 019562 205 SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRG 284 (339)
Q Consensus 205 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g 284 (339)
+.....|..|.|.|.+......+|..+ +|..|.|.|.+..+.|..|.|.+.+...+.+.|.+|+|+.++.+|++.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~ 253 (288)
T KOG0715|consen 178 GAKRESCKTCSGRGLVSNPKEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAG 253 (288)
T ss_pred ccccccchhhhCcccccccccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEec
Confidence 999999999999997766555555443 8999999999999899999999988889999999999999999999999
Q ss_pred CCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhh
Q 019562 285 EGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTE 327 (339)
Q Consensus 285 ~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~e 327 (339)
.|.. ||+|.+.|..++.|+|+|.|++++..|++.+
T Consensus 254 ~~~~--------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 254 HGND--------DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred CCcc--------eEEEEEEeccCcccccccCcccccccccccC
Confidence 9863 9999999999999999999999999998764
No 34
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-39 Score=294.64 Aligned_cols=257 Identities=34% Similarity=0.495 Sum_probs=187.5
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccC
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDG 119 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~ 119 (339)
...+|||++|||+++|+..|||+||||||++||||+|+ +|.|.+.|++|+.||+|||||++|+.||+||+++++.....
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~ 92 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKD 92 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccc
Confidence 34689999999999999999999999999999999998 68999999999999999999999999999999999753211
Q ss_pred CCCCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCC
Q 019562 120 LSNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGG 199 (339)
Q Consensus 120 ~~~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G 199 (339)
.+++..+ .++|+.||+.++..+++. . ......+|.++...+..++++.|.|......-.+.+.|. |.|
T Consensus 93 ~~~g~~~---~~~f~~~f~dfg~~~~g~--~------~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g 160 (336)
T KOG0713|consen 93 GEGGGGG---NDIFSAFFGDFGVTVGGN--P------LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APG 160 (336)
T ss_pred cccCCcc---cchHHHhhcccccccCCC--c------ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCc
Confidence 1111111 466777887643222211 0 012256789999999999999998875443322222221 111
Q ss_pred CCccCCCCcccCCCCCCccEEEEeeecCCcc--eeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCC
Q 019562 200 TGAKSSNCIQSCKACWGRGGVLKTQRTPFGL--ISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (339)
Q Consensus 200 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~--~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G 277 (339)
.. .|+-+-.. ..++...|. +.|...|..|.+ .+.......+++.+..+...+
T Consensus 161 --~~---------~~~~~~~~-~~~~~~~g~~~~~q~~~~~~~~~--------------~k~~~e~~~~~~~~~~~~~~~ 214 (336)
T KOG0713|consen 161 --TR---------KCNCRLEM-FTQQEGPGRFQMLQEAVCDECPN--------------VKLVLEEDPLEVEFERGDADG 214 (336)
T ss_pred --cc---------ccCChhhh-eeeccCCChhhhhhhhhhccCCc--------------cceeecCCceeeeeeecccCC
Confidence 10 11111111 111112222 223345666654 445666788999999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEe
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEV 336 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V 336 (339)
....+..+|.+.. -+.+||+++.+...+|+.|.|+++|+++++.|++.++|.|+..++
T Consensus 215 ~~~~~~~~~~~h~-~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~ 272 (336)
T KOG0713|consen 215 PEEIFELEGEPHI-DGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEI 272 (336)
T ss_pred ceeeeeccCCcce-ecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHh
Confidence 9999999998854 468999999999999999999999999999999999999987654
No 35
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.96 E-value=1.5e-28 Score=246.15 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=71.0
Q ss_pred eEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 258 GEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 258 g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
..+...+.++|.||+|+++|++|+|+|+|+... ++ .|||||+|.+++|+.|+|+|+||++++.|+|.+||||+++.|+
T Consensus 691 ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegp-gg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeIp 768 (871)
T TIGR03835 691 STTNEAITLEIQLPITSQLNISAIFKGFGHDFG-NG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDVF 768 (871)
T ss_pred ceeeeeEEEEEecCCCCCCCCEEEeccccCCCC-CC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEee
Confidence 345556799999999999999999999999753 33 4999999999999999999999999999999999999999987
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.6e-20 Score=173.80 Aligned_cols=235 Identities=32% Similarity=0.468 Sum_probs=158.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~ 120 (339)
..|||++|+|.++|+.+||++||+++|++||||+++.+ .+.++|++|++||++|+|+.+|.+||+||++++.......
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 47999999999999999999999999999999998866 5667899999999999999999999999997766411100
Q ss_pred C---C---CCCCCChhhhhccccCCCCCCCCC------------------CCCCCCccccC----------CCCCCCCcc
Q 019562 121 S---N---TSQGVDPFELYSAFFGGSDGLFGG------------------VGEAGGINFNF----------GNKGNFGLD 166 (339)
Q Consensus 121 ~---~---~~~~~~~~~~f~~fFg~~~~~fg~------------------~g~~~~~~~~~----------~~~~~~g~d 166 (339)
. . .....++.+.|.+|||....+... .+.......+. .....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 0 0 012234567788888844332211 00000000000 000011111
Q ss_pred eEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEE
Q 019562 167 IRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI 246 (339)
Q Consensus 167 i~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 246 (339)
+...+.+++++.+.|..+...+.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 188 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSF----------------------------------------------------- 188 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccc-----------------------------------------------------
Confidence 222333355555555555544332110
Q ss_pred EeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe--cccC
Q 019562 247 IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK--ISVD 324 (339)
Q Consensus 247 ~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~--~~I~ 324 (339)
... +.........+.+.+++++..|+.+....+|..... ..+-++++.+..++|..|.+.+.+|... ..|+
T Consensus 189 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s 261 (306)
T KOG0714|consen 189 -----TSN-GREGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEIS 261 (306)
T ss_pred -----cCC-cccccCccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceee
Confidence 000 000122346678999999999999999999986542 5677888889999999999999999999 9999
Q ss_pred hhhhhcCCeEEee
Q 019562 325 YTEAILGTSMEVG 337 (339)
Q Consensus 325 l~eAllG~~~~V~ 337 (339)
+.+|++|....|+
T Consensus 262 ~~~~~~~~~~~~~ 274 (306)
T KOG0714|consen 262 LKEALLGVTVFVP 274 (306)
T ss_pred hhhhhcCcceeee
Confidence 9999999998775
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.7e-20 Score=166.06 Aligned_cols=72 Identities=54% Similarity=0.885 Sum_probs=68.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
..|+|++|||+++|+.++||||||+||++||||++++ |++.++|++||+||+||+||.+|.+||+||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 5799999999999999999999999999999999985 88999999999999999999999999999998765
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.79 E-value=1.4e-19 Score=185.93 Aligned_cols=76 Identities=38% Similarity=0.635 Sum_probs=70.7
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 39 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
.+..+.+||++|||+++||..|||+|||+||++||||+++++.+.++|++|++||+|||||.+|+.||+||..|+.
T Consensus 568 ~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 568 IEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 3345789999999999999999999999999999999998777899999999999999999999999999998765
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-19 Score=167.16 Aligned_cols=90 Identities=46% Similarity=0.744 Sum_probs=79.5
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL 120 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~ 120 (339)
...|||++|||+.+||..||++|||+.|++||||+|| +|.|.++|+.+.+||+||+|+.+|+.||++|..+....
T Consensus 3 ~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~---- 78 (296)
T KOG0691|consen 3 KDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ---- 78 (296)
T ss_pred ccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch----
Confidence 3689999999999999999999999999999999998 78899999999999999999999999999998765321
Q ss_pred CCCCCCCChhhhhccccCC
Q 019562 121 SNTSQGVDPFELYSAFFGG 139 (339)
Q Consensus 121 ~~~~~~~~~~~~f~~fFg~ 139 (339)
...+++++|.+-|++
T Consensus 79 ----~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 79 ----GREDQADGFRKKFGS 93 (296)
T ss_pred ----hhhhHHHHHHHHhhh
Confidence 235777888877763
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-19 Score=171.90 Aligned_cols=72 Identities=50% Similarity=0.899 Sum_probs=68.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
+.|||.+|+|+++||.+||++|||++++.||||+..++ .|++.|+.|.+||||||||.+|++||.||++||+
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 46999999999999999999999999999999998654 4899999999999999999999999999999998
No 41
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.6e-18 Score=150.78 Aligned_cols=70 Identities=59% Similarity=0.882 Sum_probs=64.6
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccCchhhhhhhccc
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd~~G 109 (339)
+....|||+||||+++|+.+||++|||++|++||||+++... +.++|+.|++||++|+|+.+|+.||+++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 345689999999999999999999999999999999998543 8999999999999999999999999973
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-18 Score=165.18 Aligned_cols=75 Identities=44% Similarity=0.677 Sum_probs=68.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 116 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~ 116 (339)
+.+.||++|||.++|+..|||++||+||++||||+|++ .++.++|+.|+.||+|||||+.|++||.+-++-|.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999885 4688999999999999999999999999887666543
No 43
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.72 E-value=3.8e-18 Score=123.94 Aligned_cols=62 Identities=48% Similarity=0.817 Sum_probs=59.1
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--hHHHHHHHHHHHhhccCchhhhhhh
Q 019562 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG--AEEKFKEISSAYEVLSDDEKRSVYD 106 (339)
Q Consensus 45 d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~--~~~~f~~i~~Ay~vL~d~~~r~~yd 106 (339)
|||+||||+++++.++||++|+++++++|||++.... +.+.|+.|++||++|++|.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987655 8899999999999999999999998
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=1.8e-17 Score=153.49 Aligned_cols=75 Identities=48% Similarity=0.736 Sum_probs=66.8
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~----~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
.+..+|||+||||.++|+..||.||||+||.+||||...+. .++++|..|..|-|||+||++|+.||+ |+..+..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 34578999999999999999999999999999999976643 488999999999999999999999998 6666654
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.8e-17 Score=144.24 Aligned_cols=69 Identities=46% Similarity=0.762 Sum_probs=64.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHhhccCchhhhhhhccccc
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~ 111 (339)
.+|+|++|||.++|+..+|++||++||++||||+++ ..++.++|+.++.||+||+|.++|++||+.|.-
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 359999999999999999999999999999999995 246899999999999999999999999998864
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.67 E-value=5.3e-17 Score=136.81 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=71.3
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 44 TDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 44 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..+|++|||+++| |.+|||+|||++|+++|||+++ ..++|++|++||++|+|+.+|..||.+|+......
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~----- 76 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE----- 76 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCcccccc-----
Confidence 5689999999999 9999999999999999999973 46899999999999999999999999998654321
Q ss_pred CCCCCCChhhhhccccCC
Q 019562 122 NTSQGVDPFELYSAFFGG 139 (339)
Q Consensus 122 ~~~~~~~~~~~f~~fFg~ 139 (339)
...+.++|...||+
T Consensus 77 ----~~~~~~~f~~~fg~ 90 (153)
T PHA03102 77 ----EDVPSGYVGATFGD 90 (153)
T ss_pred ----cccHHHHhhhhcCC
Confidence 12267777777764
No 47
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.64 E-value=3e-16 Score=112.27 Aligned_cols=58 Identities=67% Similarity=0.969 Sum_probs=54.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC--CcchHHHHHHHHHHHhhccCchh
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK--SPGAEEKFKEISSAYEVLSDDEK 101 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~--~~~~~~~f~~i~~Ay~vL~d~~~ 101 (339)
.|||++|||+++++.++||+||++|++++|||++. .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999987 56789999999999999999853
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-16 Score=135.53 Aligned_cols=70 Identities=37% Similarity=0.686 Sum_probs=65.4
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccCchhhhhhhccccc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~ 111 (339)
...|+|+||||+++||+.|||||||+|++++|||++++ .+.++.|..|++||+.|+|+..|..|.+||..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 35799999999999999999999999999999999987 56778889999999999999999999999974
No 49
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.1e-16 Score=146.86 Aligned_cols=121 Identities=29% Similarity=0.621 Sum_probs=95.8
Q ss_pred eeeeCCCCCCCCccCC-------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee-------------
Q 019562 190 CFETCDSCGGTGAKSS-------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~-------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------- 249 (339)
..+.|++|+|+|.... ..+++|+.|+|+|+++. .+|+.|+|.|++...
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~------------~pC~~C~G~G~v~~~~~i~V~IPaGv~~ 225 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIK------------DPCGKCKGKGRVKKKKSISVNIPAGVDD 225 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECC------------CCCCCCCCCCeEeeeeEEEEECCCCCcc
Confidence 4678999999998533 33789999999999875 799999999996540
Q ss_pred --------------------------------ccc-----------------ccCCceEEee-ceEEEEEeCCCCCCCCE
Q 019562 250 --------------------------------HCR-----------------RCGGNGEVQS-KRSMKVVIPPGVSNGAT 279 (339)
Q Consensus 250 --------------------------------~C~-----------------~C~g~g~~~~-~~~l~v~Ip~G~~~G~~ 279 (339)
... ..++...+.+ ...++|+||+|+++|++
T Consensus 226 g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~ 305 (371)
T COG0484 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEV 305 (371)
T ss_pred CCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcE
Confidence 111 1233333332 33489999999999999
Q ss_pred EEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 280 MQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 280 i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
++|+|+|++..++...|||||+|.|+.|..+..++..|+.++.
T Consensus 306 ~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~ 348 (371)
T COG0484 306 FRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLEEFA 348 (371)
T ss_pred EEEcCCCccccCCCCcCCEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 9999999998777778999999999999999988888776654
No 50
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=9.6e-16 Score=107.64 Aligned_cols=54 Identities=67% Similarity=0.987 Sum_probs=51.3
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHHHhhccC
Q 019562 45 DYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSD 98 (339)
Q Consensus 45 d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-~~~~~~f~~i~~Ay~vL~d 98 (339)
|||++|||+++++.++||++|++|+++||||++.. ..+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999876 6789999999999999986
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-15 Score=144.32 Aligned_cols=94 Identities=39% Similarity=0.650 Sum_probs=78.6
Q ss_pred ccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 37 GMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 37 ~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
.+.++..+|||.|||++++|+..|||+|||++|+.||||++.. .+++.+|+++.+||.+|+||.+|..||.--. +.
T Consensus 366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d--le 443 (486)
T KOG0550|consen 366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD--LE 443 (486)
T ss_pred HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc--hh
Confidence 4677788999999999999999999999999999999999863 5789999999999999999999999997321 11
Q ss_pred CcccCCCCCCCCCChhhhhccc
Q 019562 115 GEYDGLSNTSQGVDPFELYSAF 136 (339)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~f~~f 136 (339)
.. +.+..+++|+++|..|
T Consensus 444 ~~----~~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 444 EV----GSGGAGFDPFNIFRAF 461 (486)
T ss_pred hh----cCCCcCcChhhhhhhc
Confidence 11 1122678999988877
No 52
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.4e-15 Score=144.69 Aligned_cols=119 Identities=29% Similarity=0.561 Sum_probs=90.8
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|++...
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 236 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPG------------EYCHECGGSGRIRRRVRTTVKIPAGVE 236 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCC------------CCCCCCCCceeEEEEEEEEEEeCCCCC
Confidence 467999999997532 23579999999998754 679999999865430
Q ss_pred --------------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNG 277 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G 277 (339)
.=..+++...+.. ...++|.||+|+++|
T Consensus 237 ~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g 316 (369)
T PRK14282 237 DGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPE 316 (369)
T ss_pred CCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCC
Confidence 0002233333332 245799999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
++++|+|+|++....+.+|||||+|+|+.|+.|++++.+|+.++
T Consensus 317 ~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 317 TVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999998654456899999999999999999999987664
No 53
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1.2e-14 Score=140.69 Aligned_cols=119 Identities=26% Similarity=0.614 Sum_probs=92.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|.|.|+++. .+|+.|+|+|++...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 232 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPE------------EKCPRCNGTGTVVVNEDISVKIPKGAT 232 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEcc------------CCCCCCCCceeEEEeeEEEEEECCCCC
Confidence 468999999997532 12579999999998754 789999999986530
Q ss_pred ------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEE
Q 019562 250 ------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATM 280 (339)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i 280 (339)
.=..+++...+.. ...++|.||+|+++|+++
T Consensus 233 ~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~i 312 (365)
T PRK14290 233 DNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVL 312 (365)
T ss_pred CCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEE
Confidence 0012233333332 345799999999999999
Q ss_pred EEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 281 ~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+|+|+|++...+..+|||||+|+|.+|+.|++++.+|+.++
T Consensus 313 ri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 313 KIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999998655556899999999999999999999988775
No 54
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.9e-15 Score=141.98 Aligned_cols=120 Identities=26% Similarity=0.530 Sum_probs=90.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|+++. .+|+.|.|.|++...
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 225 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE------------SPCPVCSGTGKVRKTRKITVNVPAGAD 225 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC------------CCCCCCCCccEEEEEEEEEecCCCCCC
Confidence 357999999997532 23678999999998754 679999999876430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|+||+|+++|+
T Consensus 226 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 305 (377)
T PRK14298 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHS 305 (377)
T ss_pred CCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCC
Confidence 0012233333322 2346899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
+++|+|+|++...++.+|||||+|+|..|+.|++++.+|+.++.
T Consensus 306 ~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~ 349 (377)
T PRK14298 306 VFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREFD 349 (377)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999986555568999999999999999999988877653
No 55
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.5e-14 Score=139.96 Aligned_cols=120 Identities=25% Similarity=0.530 Sum_probs=90.5
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... +.+.+|+.|+|+|+++. ..|+.|.|.|++...
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIV------------SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSR 228 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecC------------cCCCCCCCceEeecceeEEEecCCCCcCCcE
Confidence 357999999987531 24678999999998754 679999998876430
Q ss_pred ----------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i~l 282 (339)
.=..+++...+.. ...++|.||+|+++|++|+|
T Consensus 229 i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri 308 (366)
T PRK14294 229 LRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRF 308 (366)
T ss_pred EEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEE
Confidence 0012233333332 23458999999999999999
Q ss_pred ccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 283 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
+|+|++...+..+|||||+|+|..|+.|.+++.+|+.++.
T Consensus 309 ~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 309 KGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999986655568999999999999999999998887754
No 56
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.4e-14 Score=138.90 Aligned_cols=119 Identities=29% Similarity=0.642 Sum_probs=87.9
Q ss_pred eeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee-----------------
Q 019562 192 ETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID----------------- 249 (339)
Q Consensus 192 ~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~----------------- 249 (339)
..|+.|+|+|.... ..+.+|+.|+|+|+++. .+|+.|.|.|++...
T Consensus 160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 227 (371)
T PRK10767 160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIK------------DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI 227 (371)
T ss_pred ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECC------------CCCCCCCCCceEeeeeeEEEecCCCCCCCcEE
Confidence 57888888886421 24568888888887654 678888888876430
Q ss_pred ---------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEEEEc
Q 019562 250 ---------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQIR 283 (339)
Q Consensus 250 ---------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i~l~ 283 (339)
.=..+++...+.. ...++|.||+|+++|++++|+
T Consensus 228 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~ 307 (371)
T PRK10767 228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLR 307 (371)
T ss_pred EEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEEC
Confidence 0001222222211 225789999999999999999
Q ss_pred cCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 284 GEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 284 g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
|+|++...++.+|||||+|+|..|+.|++++.+|+.++.
T Consensus 308 g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~ 346 (371)
T PRK10767 308 GKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFE 346 (371)
T ss_pred CCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 999986555568999999999999999999999877754
No 57
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.9e-14 Score=139.21 Aligned_cols=119 Identities=21% Similarity=0.546 Sum_probs=91.1
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... +.+.+|+.|.|+|+++. .+|..|+|.|.+...
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 230 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIIS------------NPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccccC------------CCCCCCCCCCEEeccEEEEEEECCCCCCCCE
Confidence 457999999987532 34789999999998765 689999999976430
Q ss_pred ----------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.=..+++...+.. ...++|.||+|+++|++++
T Consensus 231 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~ir 310 (365)
T PRK14285 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQII 310 (365)
T ss_pred EEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEE
Confidence 0012233333332 2368999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
|+|+|++.......|||||+|+|++|+.|.+++..|+.++
T Consensus 311 l~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 311 IKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred ECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999998655455799999999999999999988776654
No 58
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.6e-14 Score=138.60 Aligned_cols=119 Identities=29% Similarity=0.633 Sum_probs=90.8
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... +...+|+.|+|.|+++. .+|+.|.|.|++...
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 229 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIK------------NPCKKCHGMGRYHKQRNLSVNIPAGVENGTR 229 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeC------------CCCCCCCCceEEEeeEEEEEEECCCCCCCcE
Confidence 467999999997632 24679999999998865 789999999987430
Q ss_pred ----------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.=..+++...+.. ...++|.||+|+++|++|+
T Consensus 230 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~ir 309 (372)
T PRK14300 230 IRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLR 309 (372)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEE
Confidence 0002233333333 2478999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
|+|+|++...+..+|||||+|+|+.|..|..++..++.++
T Consensus 310 i~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l 349 (372)
T PRK14300 310 LRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEF 349 (372)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999998655557899999999999999888777766554
No 59
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.9e-14 Score=138.30 Aligned_cols=120 Identities=28% Similarity=0.533 Sum_probs=89.5
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... +.+.+|+.|+|+|+++. .+|+.|.|.|++...
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 228 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVIT------------HPCPKCKGSGIVQQTRELKVRIPAGVDTGSR 228 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecC------------CCCCCCCCCceeccceEEEEEeCCCCcCCCE
Confidence 357999999987532 23678999999998764 679999998876430
Q ss_pred ----------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i~l 282 (339)
.=..+++...+.. ...++|.||+|+++|++++|
T Consensus 229 i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri 308 (373)
T PRK14301 229 LRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRL 308 (373)
T ss_pred EEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEE
Confidence 0012233333322 23479999999999999999
Q ss_pred ccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 283 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
+|+|++...++.+|||||+|+|..|+.+..++.+++.++.
T Consensus 309 ~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~ 348 (373)
T PRK14301 309 RGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFE 348 (373)
T ss_pred cCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999997655568999999999999999888877766543
No 60
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.6e-14 Score=137.11 Aligned_cols=119 Identities=28% Similarity=0.594 Sum_probs=90.4
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|++...
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 223 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP------------DPCHECAGDGRVRARREITVKIPAGVG 223 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC------------CCCCCCCCceeEecceEEEEEECCCCC
Confidence 357999999997522 23578999999998765 679999999976430
Q ss_pred --------------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNG 277 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G 277 (339)
.=..+++...+.. ...++|.||+|+++|
T Consensus 224 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g 303 (378)
T PRK14278 224 DGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPG 303 (378)
T ss_pred CCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCC
Confidence 0112344444432 456899999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
++++|+|+|++....+.+|||||+|+|..|..+..+...++.++
T Consensus 304 ~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~ 347 (378)
T PRK14278 304 SVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL 347 (378)
T ss_pred cEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999998755556899999999999998887777666554
No 61
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.5e-14 Score=138.54 Aligned_cols=119 Identities=27% Similarity=0.594 Sum_probs=91.4
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|.|.|++...
T Consensus 175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 242 (391)
T PRK14284 175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT------------DPCSVCRGQGRIKDKRSVHVHIPAGVDSGMR 242 (391)
T ss_pred CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC------------CcCCCCCCcceecceEEEEEEECCCCCCCCE
Confidence 457999999987531 24679999999998764 679999999876420
Q ss_pred ----------------------------------------------cccccCCceEEee---ceEEEEEeCCCCCCCCEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS---KRSMKVVIPPGVSNGATM 280 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~---~~~l~v~Ip~G~~~G~~i 280 (339)
.=..+++...+.. ...++|.||+|+++|+++
T Consensus 243 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~ 322 (391)
T PRK14284 243 LKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTIL 322 (391)
T ss_pred EEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEE
Confidence 0112344444432 257899999999999999
Q ss_pred EEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 281 ~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+|+|+|++...+..+|||||+|+|..|+.++.++.+|+.++
T Consensus 323 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 323 KVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred EECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999765557899999999999999998887776654
No 62
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=4.4e-14 Score=136.95 Aligned_cols=119 Identities=27% Similarity=0.525 Sum_probs=88.6
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... ....+|+.|.|+|+++. .+|+.|+|.|.+...
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 234 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS------------NPCKTCGGQGLQEKRRTINIKIPPGVETGSR 234 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec------------ccCCCCCCCcEEecceEEEEEECCCCCCCCE
Confidence 357999999987522 24678999999998765 679999999876530
Q ss_pred --------cc--------------------------------------cccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 --------HC--------------------------------------RRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 --------~C--------------------------------------~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.. ..+++...+.. ...++|.||+|+++|++++
T Consensus 235 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~r 314 (372)
T PRK14286 235 LKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFR 314 (372)
T ss_pred EEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEE
Confidence 00 01223222222 2357999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
|+|+|++...+...|||||+|+|..|..+..++.+|+.++
T Consensus 315 i~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l 354 (372)
T PRK14286 315 LKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELIEEF 354 (372)
T ss_pred ECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999755556899999999999998888887766553
No 63
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.2e-14 Score=137.06 Aligned_cols=119 Identities=29% Similarity=0.497 Sum_probs=90.3
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ..+.+|+.|.|+|+++. .+|+.|.|.|++...
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 246 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK------------DRCPACYGEGIKQGEVTVKVTVPAGVQ 246 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC------------CCCCCCCCCccEecceEEEEecCCCCC
Confidence 568999999997532 13578999999998865 689999999987430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|+||+|+++|+
T Consensus 247 ~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~ 326 (397)
T PRK14281 247 DGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPET 326 (397)
T ss_pred CCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCc
Confidence 0112333333332 2347899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++...++.+|||||+|+|..|..+..++..|+.++
T Consensus 327 ~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l 369 (397)
T PRK14281 327 MLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKEL 369 (397)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999998655556899999999999998887776665553
No 64
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=8.6e-14 Score=135.76 Aligned_cols=118 Identities=25% Similarity=0.532 Sum_probs=89.0
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|+++. .+|..|.|.|++...
T Consensus 190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 257 (392)
T PRK14279 190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIE------------DPCEECKGTGVTTRTRTINVRIPPGVEDGQR 257 (392)
T ss_pred CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeC------------CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcE
Confidence 467999999998632 34689999999999865 689999999977530
Q ss_pred ----------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATMQI 282 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i~l 282 (339)
.=..+++...+.. ...++|+||+|+++|++|+|
T Consensus 258 i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri 337 (392)
T PRK14279 258 IRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRV 337 (392)
T ss_pred EEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEE
Confidence 0001233222222 23479999999999999999
Q ss_pred ccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 283 RGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 283 ~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+|+|++.. ++.+|||||+|+|..|..+..++..++.++
T Consensus 338 ~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~ 375 (392)
T PRK14279 338 RGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEAY 375 (392)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999963 456899999999999998887776665553
No 65
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=9.4e-14 Score=134.55 Aligned_cols=120 Identities=29% Similarity=0.550 Sum_probs=89.9
Q ss_pred eeeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee---------------
Q 019562 190 CFETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID--------------- 249 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~--------------- 249 (339)
....|+.|+|+|.... ....+|+.|.|+|+++. .+|+.|.|.|++...
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~ 222 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIK------------TPCQACKGKTYILKDEEIDAIIPEGIDDQN 222 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEcc------------ccCccCCCcceEEEEEEEEEecCCCCCCCC
Confidence 3568999999997522 23569999999998765 689999999876430
Q ss_pred ----------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.=..|++...+.. ...++|.||+|+++|++++
T Consensus 223 ~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~ 302 (369)
T PRK14288 223 RMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFA 302 (369)
T ss_pred EEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEE
Confidence 0112333333332 2357999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
|+|+|++.......|||||+|+|+.|..|..++..++.++
T Consensus 303 i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~ 342 (369)
T PRK14288 303 FRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKL 342 (369)
T ss_pred EcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999654445799999999999999988776665543
No 66
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.46 E-value=1.3e-13 Score=100.62 Aligned_cols=65 Identities=48% Similarity=0.999 Sum_probs=54.5
Q ss_pred CCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE-eecccccCCce
Q 019562 194 CDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII-IDHCRRCGGNG 258 (339)
Q Consensus 194 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-~~~C~~C~g~g 258 (339)
|+.|+|+|........+|+.|+|+|+++..++.+++++++..+|+.|+|+|+++ .++|+.|+|.+
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 899999999999999999999999999999888888888889999999999999 99999999864
No 67
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.46 E-value=8.5e-14 Score=134.36 Aligned_cols=118 Identities=31% Similarity=0.633 Sum_probs=87.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... +.+.+|+.|.|+|+++. .+|+.|.|.|++...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 227 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK------------EPCSTCKGKGRVKERKTITVKIPAGVD 227 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC------------CCCCCCCCCcEecccceEEEEECCCCC
Confidence 467999999986421 23569999999998764 679999999876430
Q ss_pred ------------c--------------------------------------ccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 ------------H--------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 ------------~--------------------------------------C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
. =..|++...+.. ...++|.||+|+++|+
T Consensus 228 ~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~ 307 (354)
T TIGR02349 228 TGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGT 307 (354)
T ss_pred CCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCc
Confidence 0 001222222221 2357999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
+++|+|+|++...+..+|||||+|+|..|+.+++++.+++.+
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~ 349 (354)
T TIGR02349 308 VFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEE 349 (354)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999876555789999999999999998888766543
No 68
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.4e-14 Score=135.36 Aligned_cols=119 Identities=29% Similarity=0.563 Sum_probs=89.0
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|.|+|+++. .+|..|+|.|.+...
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 222 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK------------QKCATCGGKGKVRKRKKINVKVPAGID 222 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc------------ccCCCCCCeeEEeeeEEEEEEECCcCC
Confidence 457999999997532 23578999999998765 679999998865430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|+||+|+++|+
T Consensus 223 ~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 302 (371)
T PRK14287 223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGT 302 (371)
T ss_pred CCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCc
Confidence 0012233333332 2347999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++...++.+|||||+|+|..|+.+++++..|+.++
T Consensus 303 ~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 303 SFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred EEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 9999999998655556899999999999999998887776664
No 69
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.2e-13 Score=133.85 Aligned_cols=119 Identities=21% Similarity=0.515 Sum_probs=87.7
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... +.+.+|+.|+|+|+++. ..|+.|.|.|++...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 233 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIK------------NKCKNCKGKGKYLERKKIEVNIPKGIR 233 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeec------------ccccCCCCceEEEEEEEEEEEECCCCC
Confidence 357999999997632 23569999999998865 689999999976430
Q ss_pred ---------------------------------ccc------------------ccCCceEEee-ceEEEEEeCCCCCCC
Q 019562 250 ---------------------------------HCR------------------RCGGNGEVQS-KRSMKVVIPPGVSNG 277 (339)
Q Consensus 250 ---------------------------------~C~------------------~C~g~g~~~~-~~~l~v~Ip~G~~~G 277 (339)
... .|++...+.+ ...++|.||+++++|
T Consensus 234 ~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g 313 (372)
T PRK14296 234 PNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSN 313 (372)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCC
Confidence 011 2233333322 223699999999999
Q ss_pred CEEEEccCCCCCC-CCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 278 ATMQIRGEGNFDR-RRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 278 ~~i~l~g~G~~~~-~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
++++|+|+|+|.. ..+..|||||+|+|+.|..+..+...|+.++
T Consensus 314 ~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l 358 (372)
T PRK14296 314 ELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQI 358 (372)
T ss_pred cEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999843 3345799999999999998887776665543
No 70
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.2e-13 Score=134.09 Aligned_cols=119 Identities=29% Similarity=0.545 Sum_probs=87.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|++...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 227 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIK------------EKCPTCHGKGKVRKRKKINVKIPAGVD 227 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceec------------CCCCCCCCceEEEEEEEEEEEeCCCCc
Confidence 457999999987421 23568999999998764 679999999876430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|.||+|+++|+
T Consensus 228 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~ 307 (376)
T PRK14280 228 NGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGT 307 (376)
T ss_pred CCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCc
Confidence 0012233333332 2347899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++...+..+|||||+|+|..|..+..+...++.++
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l 350 (376)
T PRK14280 308 QFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELLREF 350 (376)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999998755556899999999999998887776665554
No 71
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=9.7e-14 Score=135.00 Aligned_cols=119 Identities=24% Similarity=0.468 Sum_probs=85.5
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ..+.+|+.|.|+|+++. .+|+.|.|.|++...
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~ 230 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIK------------EPCQTCHGTGHEKQAHTVSVKIPAGVE 230 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcccc------------CCCCCCCCceEEEEEEEEEEEeCCCcc
Confidence 356888988887521 22568888888888764 678888888875430
Q ss_pred ------------c--------------------------------------ccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 ------------H--------------------------------------CRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 ------------~--------------------------------------C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
. =..+++...+.. ...++|.||+|+++|+
T Consensus 231 ~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~ 310 (380)
T PRK14276 231 TGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGK 310 (380)
T ss_pred CCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 0 001223322222 2246899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++...+..+|||||+|+|..|..+..+...++.++
T Consensus 311 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~ 353 (380)
T PRK14276 311 KFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAF 353 (380)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999765556899999999999998887776665554
No 72
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=1.6e-13 Score=118.91 Aligned_cols=64 Identities=27% Similarity=0.444 Sum_probs=57.0
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 44 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.|||++|||++. ++..+|+++||+|++++|||+..+. .+.+.|..||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 7889999999999999999997532 156789999999999999999999984
No 73
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.5e-13 Score=133.44 Aligned_cols=120 Identities=24% Similarity=0.521 Sum_probs=89.7
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... +...+|+.|.|+|+++. .+|..|.|+|++...
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~IppG~~ 227 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIE------------DPCDACGGQGVKQVTKKLKINIPAGVD 227 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEec------------cCCCCCCCCcccccceEEEEEeCCCCC
Confidence 357999999997521 23578999999998765 679999999875430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..|++...+.. ...++|.||+|+++|+
T Consensus 228 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~ 307 (374)
T PRK14293 228 TGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNT 307 (374)
T ss_pred CCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCC
Confidence 0112333333332 2246899999999999
Q ss_pred EEEEccCCCCCCCC-CCCcCEEEEEEEecCCCccccccceeEecc
Q 019562 279 TMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLFSKIS 322 (339)
Q Consensus 279 ~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~ 322 (339)
+++|+|+|++...+ +..|||||+|+|..|+.+++++.+|+.++.
T Consensus 308 ~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~ 352 (374)
T PRK14293 308 VLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLA 352 (374)
T ss_pred EEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999986543 357999999999999999999998877653
No 74
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.9e-13 Score=132.93 Aligned_cols=118 Identities=26% Similarity=0.538 Sum_probs=87.3
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|.++. .+|..|.|.|.+...
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 232 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIE------------DPCNKCHGKGKVRKNRKIKVNVPAGVD 232 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcC------------CCCCCCCCCeEEEeEeEEEEEeCCCCC
Confidence 467999999996521 24679999999998754 689999999865320
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|.||+|+++|+
T Consensus 233 ~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~ 312 (380)
T PRK14297 233 TGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGT 312 (380)
T ss_pred CCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCC
Confidence 0001233333322 2347899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
+++|+|+|++...++.+|||||+|+|..|..+..+...++.+
T Consensus 313 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~ 354 (380)
T PRK14297 313 VFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTM 354 (380)
T ss_pred EEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHH
Confidence 999999999865555689999999999999888777666544
No 75
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.6e-13 Score=133.71 Aligned_cols=119 Identities=29% Similarity=0.582 Sum_probs=88.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|.|+|+++. .+|+.|+|.|++...
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 239 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT------------DPCNKCGGTGRIRRRRKIKVNIPAGID 239 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc------------CCCCCCCCCcEEeeeeEEEEecCCCcc
Confidence 467999999997521 22468999999998865 689999999976430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..|++...+.. ...++|.||+|+++|+
T Consensus 240 ~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~ 319 (386)
T PRK14277 240 DGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGT 319 (386)
T ss_pred CCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCC
Confidence 0002233333322 2236899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++...+...|||||+|+|..|..+..++.+++.++
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999998655556899999999999998887777665554
No 76
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.43 E-value=1.6e-13 Score=118.22 Aligned_cols=64 Identities=30% Similarity=0.450 Sum_probs=56.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 44 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.|||++|||++. ++..+|+++||+|++++|||++.+.. +.+.+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 589999999997 78999999999999999999986421 33568899999999999999999975
No 77
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.8e-13 Score=133.38 Aligned_cols=118 Identities=26% Similarity=0.557 Sum_probs=89.1
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|+++. .+|..|.|.|++...
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ 250 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIAD------------DPCLVCKGSGRAKSSRTMQVRIPAGVSDGQR 250 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEec------------cCCCCCCCCceEeeeeEEEEEeCCCCCCCCE
Confidence 467999999997522 24679999999998865 689999999976430
Q ss_pred ----------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.=..+++...+.. ...++|.||+|+++|++|+
T Consensus 251 i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~ir 330 (389)
T PRK14295 251 IRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLR 330 (389)
T ss_pred EEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEE
Confidence 0012233333322 2368999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
|+|+|++.. ++.+|||||+|+|..|..+..++..++.++
T Consensus 331 i~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l 369 (389)
T PRK14295 331 VRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEAF 369 (389)
T ss_pred ECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999863 456899999999999998887777666553
No 78
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.9e-13 Score=133.25 Aligned_cols=118 Identities=29% Similarity=0.561 Sum_probs=88.2
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. ..|+.|+|.|.+...
T Consensus 171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 238 (386)
T PRK14289 171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK------------KKCKKCGGEGIVYGEEVITVKIPAGVA 238 (386)
T ss_pred CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC------------cCCCCCCCCcEEeeeEEEEEEeCCCCC
Confidence 467999999998632 23578999999998754 679999999976430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|.||+|+++|+
T Consensus 239 ~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~ 318 (386)
T PRK14289 239 EGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGK 318 (386)
T ss_pred CCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCc
Confidence 0012233333333 3357999999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
+++|+|+|.+...++.+|||||+|+|+.|..+..++..|+.+
T Consensus 319 ~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~ 360 (386)
T PRK14289 319 VLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEK 360 (386)
T ss_pred EEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHH
Confidence 999999999876556789999999999998887776665544
No 79
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.2e-14 Score=124.20 Aligned_cols=70 Identities=39% Similarity=0.695 Sum_probs=65.5
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 39 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
+-+...|.|++|||+++|+..||.+|||+||+++|||+++++++.+.|..|.+||++|.|.+.|..||-+
T Consensus 28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 3345689999999999999999999999999999999999999999999999999999999999999964
No 80
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.41 E-value=3.5e-13 Score=132.16 Aligned_cols=120 Identities=23% Similarity=0.450 Sum_probs=88.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|+++... .+|+.|+|.|++...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~----------~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 235 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES----------KKCKNCSGKGVKKTRKILEVNIDKGVP 235 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc----------ccCCcCCCcceeeeeeEEEEeeCCCCC
Confidence 467999999996411 2467999999999876522 689999999976530
Q ss_pred -------------------------------------------------cccccCCceEEee--ceEEEEEeCCC--CCC
Q 019562 250 -------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPG--VSN 276 (339)
Q Consensus 250 -------------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G--~~~ 276 (339)
.=..|++...+.. ...|+|+||+| +++
T Consensus 236 dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~p 315 (421)
T PTZ00037 236 NQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKP 315 (421)
T ss_pred CCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCC
Confidence 0112344433332 23579999999 999
Q ss_pred CCEEEEccCCCCCCCC-CCCcCEEEEEEEecC--CCccccccceeEe
Q 019562 277 GATMQIRGEGNFDRRR-SLAGDLFVALHVDEK--QGIHRDGLNLFSK 320 (339)
Q Consensus 277 G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~--~~f~R~g~dL~~~ 320 (339)
|++++|+|+|+|...+ ...|||||+|+|..| ..+..+...|+.+
T Consensus 316 g~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~ 362 (421)
T PTZ00037 316 GDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKS 362 (421)
T ss_pred CcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHH
Confidence 9999999999996543 467999999999999 7777666555443
No 81
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.41 E-value=3.8e-13 Score=116.38 Aligned_cols=66 Identities=26% Similarity=0.425 Sum_probs=58.9
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 42 ~~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
...|||++|||++. .+..+|+++||+|++++|||++.... +.+.|..||+||++|+||.+|+.|+-
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46799999999997 67899999999999999999975322 56789999999999999999999995
No 82
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=4.9e-13 Score=130.06 Aligned_cols=119 Identities=27% Similarity=0.568 Sum_probs=87.6
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|+.|+|+|.... ....+|+.|.|+|+.+. .+|..|.|.|.+...
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVE------------KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecC------------CCCCCCCCceeeccceeEEEEECCCCC
Confidence 457999999998632 23578999999998754 679999999875430
Q ss_pred --------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCC
Q 019562 250 --------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGA 278 (339)
Q Consensus 250 --------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~ 278 (339)
.=..+++...+.. ...++|.||+|+++|+
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~ 310 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGT 310 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCC
Confidence 0001223322321 2357899999999999
Q ss_pred EEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 279 TMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 279 ~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+++|+|+|++......+|||||+|+|..|+.++.++..|+.++
T Consensus 311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~ 353 (378)
T PRK14283 311 TFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREF 353 (378)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 9999999998655456899999999999988887776665543
No 83
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3e-13 Score=129.39 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=64.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
.+|.|.+|||+.++++++|||.||++|...|||+|..+.|+|.|+.++.||++|+|+++|..||.-
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999973
No 84
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=5.5e-13 Score=129.80 Aligned_cols=108 Identities=34% Similarity=0.616 Sum_probs=80.1
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee----------------
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID---------------- 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~---------------- 249 (339)
...|+.|+|+|.... ..+.+|+.|+|+|. +. ..|+.|+|.|++...
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~------------~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 239 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LR------------EPCSKCNGRGLVIKKETIKVRIPPGVDNGSK 239 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceE-Ec------------cCCCCCCCCceEEeeeEEEEEeCCCCCCCCE
Confidence 467999999997532 34679999999994 33 679999999876430
Q ss_pred ----------------------------------------------cccccCCceEEee--ceEEEEEeCCCCCCCCEEE
Q 019562 250 ----------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPGVSNGATMQ 281 (339)
Q Consensus 250 ----------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G~~~G~~i~ 281 (339)
.=..+++...+.. ...++|.||+|+++|++|+
T Consensus 240 i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 240 LRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319 (382)
T ss_pred EEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEE
Confidence 0001223333322 3457999999999999999
Q ss_pred EccCCCCCCCCCCCcCEEEEEEEecCC--Ccc
Q 019562 282 IRGEGNFDRRRSLAGDLFVALHVDEKQ--GIH 311 (339)
Q Consensus 282 l~g~G~~~~~~~~~GDLiv~i~v~~~~--~f~ 311 (339)
|+|+|++...+..+|||||+|+|..|. .+.
T Consensus 320 i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 320 VPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence 999999876555689999999999996 366
No 85
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=7.7e-13 Score=114.94 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=58.1
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC-cc-----hHHHHHHHHHHHhhccCchhhhhhhc--ccc
Q 019562 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKS-PG-----AEEKFKEISSAYEVLSDDEKRSVYDR--FGE 110 (339)
Q Consensus 43 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~-~~-----~~~~f~~i~~Ay~vL~d~~~r~~yd~--~G~ 110 (339)
..|||++|||++. ++..+|+++||+|++++|||+... +. +.+.+..||+||++|+||.+|+.|+- .|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence 4799999999995 689999999999999999999863 22 33456899999999999999999984 454
No 86
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.36 E-value=1.2e-12 Score=127.03 Aligned_cols=119 Identities=24% Similarity=0.513 Sum_probs=86.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee------------
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------ 249 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------ 249 (339)
...|..|+|+|.... ....+|..|+|.|..+. .+|..|.|+|++...
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 224 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIIT------------DPCTVCRGRGRTLKAETVKVKLPRGID 224 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecC------------CCCCCCCCceEEeecceEEEEECCCCC
Confidence 467999999887532 12468999999997754 679999988866430
Q ss_pred ------------------------------------------------cccccCCceEEee-ceEEEEEeCCCCCCCCEE
Q 019562 250 ------------------------------------------------HCRRCGGNGEVQS-KRSMKVVIPPGVSNGATM 280 (339)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~~-~~~l~v~Ip~G~~~G~~i 280 (339)
.=..+++...+.. ...++|.||+|+++|+++
T Consensus 225 ~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ 304 (371)
T PRK14292 225 EGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLH 304 (371)
T ss_pred CCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEE
Confidence 0001223322221 223479999999999999
Q ss_pred EEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEec
Q 019562 281 QIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKI 321 (339)
Q Consensus 281 ~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~ 321 (339)
+|+|+|++...+..+|||||+|+|+.|+.++.+...|+.++
T Consensus 305 ~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~ 345 (371)
T PRK14292 305 RLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALEAY 345 (371)
T ss_pred EECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999998765566899999999999999988877765544
No 87
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.34 E-value=9.9e-13 Score=105.40 Aligned_cols=52 Identities=23% Similarity=0.410 Sum_probs=48.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~ 97 (339)
..++|++|||++++|.+||+++||+|++++|||++ ++.+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999985 56789999999999985
No 88
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.23 E-value=6.2e-12 Score=116.50 Aligned_cols=57 Identities=40% Similarity=0.531 Sum_probs=51.2
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhccC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVLSD 98 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--------~~~~~~f~~i~~Ay~vL~d 98 (339)
...|+|++|||++++|.+|||+|||+|+++||||++.. +.++++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999999999999642 2478999999999999985
No 89
>PHA02624 large T antigen; Provisional
Probab=99.19 E-value=1.1e-11 Score=124.20 Aligned_cols=60 Identities=28% Similarity=0.506 Sum_probs=56.7
Q ss_pred ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhh
Q 019562 43 GTDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVY 105 (339)
Q Consensus 43 ~~d~y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~y 105 (339)
..++|++|||+++| +.+|||+|||++|++||||++ +++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999996 4578999999999999999999999
No 90
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.16 E-value=2.7e-11 Score=92.10 Aligned_cols=52 Identities=27% Similarity=0.553 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCCCCEEEEccCCCCCCCCC-CCcCEEEEEEEecCCCcccccc
Q 019562 264 RSMKVVIPPGVSNGATMQIRGEGNFDRRRS-LAGDLFVALHVDEKQGIHRDGL 315 (339)
Q Consensus 264 ~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~-~~GDLiv~i~v~~~~~f~R~g~ 315 (339)
+.++|.||+|+++|++++++|+|++...+. .+|||||+|+|..|..++.++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk 79 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQK 79 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHh
Confidence 467899999999999999999999865555 7999999999999998876544
No 91
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=3.2e-11 Score=115.10 Aligned_cols=70 Identities=37% Similarity=0.667 Sum_probs=64.1
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccCchhhhhhhccccc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~ 111 (339)
...|+|+||||+.+++..|||++||+|..|+|||+-++ .+.+|.+++|++||+.|+|...|+.|-.||.-
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 35799999999999999999999999999999999754 35789999999999999999999999999863
No 92
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=5.5e-10 Score=96.73 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=56.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 44 TDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 44 ~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.|||++|||++. .+..+++++|++|.+++|||+..... +.+.-..||+||.+|+||.+|+.|=-
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999997 89999999999999999999975432 45677899999999999999999953
No 93
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.95 E-value=1.1e-09 Score=93.51 Aligned_cols=52 Identities=31% Similarity=0.450 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------chHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 56 ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 56 a~~~eIk~ayr~la~~~hPd~~~~~------~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.+..+|+++||+|++++|||+..+. .+.+.|..||+||++|+||.+|+.|+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4678999999999999999986432 266889999999999999999999986
No 94
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.92 E-value=9.6e-10 Score=103.38 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=73.0
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 240 (339)
.++|.||.+++.|||.+|+.|+++.|...
T Consensus 197 ~R~G~DL~~~~~Isl~eAl~G~~~~v~tl--------------------------------------------------- 225 (291)
T PRK14299 197 RLEGDDLYATVDVPAPIAVVGGKVRVMTL--------------------------------------------------- 225 (291)
T ss_pred EEECCEEEEEEecCHHHHhCCCEEEEECC---------------------------------------------------
Confidence 34588999999999999999998776432
Q ss_pred CCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
...++|.||+++++|++++|+|+|++.. .+..|||||+|+|..|+.++.++.+++.+
T Consensus 226 ----------------------dG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 226 ----------------------DGPVEVTIPPRTQAGRKLRLKGKGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred ----------------------CCCEEEEeCCCcCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1236899999999999999999999853 35689999999999999999998887655
Q ss_pred c
Q 019562 321 I 321 (339)
Q Consensus 321 ~ 321 (339)
+
T Consensus 283 l 283 (291)
T PRK14299 283 L 283 (291)
T ss_pred H
Confidence 3
No 95
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.1e-08 Score=96.51 Aligned_cols=105 Identities=27% Similarity=0.545 Sum_probs=79.8
Q ss_pred eCCCCCCCCccCC----------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee-------------
Q 019562 193 TCDSCGGTGAKSS----------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (339)
Q Consensus 193 ~C~~C~G~G~~~~----------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------- 249 (339)
.|..|.|+|.+.. ..+..|..|+|+|..+... ..|+.|.|++++...
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~k----------d~C~~C~G~~~v~~kkil~v~V~~g~~~ 214 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLK----------DRCKTCSGAKVVREKKILEVHVEPGMPH 214 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCCCcccccccc----------ccCcccccchhhhhhheeeccccCCCcc
Confidence 7999999988632 3467899999999864432 789999999876430
Q ss_pred ------------------------------------------------cccccCCceEEe--eceEEEEEeCCC--CCCC
Q 019562 250 ------------------------------------------------HCRRCGGNGEVQ--SKRSMKVVIPPG--VSNG 277 (339)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~--~~~~l~v~Ip~G--~~~G 277 (339)
.-..|.+.-... ....+++.++|| +.+|
T Consensus 215 ~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~ 294 (337)
T KOG0712|consen 215 GQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPG 294 (337)
T ss_pred cceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChh
Confidence 012344333332 346789999999 9999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCC
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQ 308 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~ 308 (339)
++++++|+|++..... .|||||.++|+.|+
T Consensus 295 ~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 295 DTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred HEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 9999999999977655 99999999999998
No 96
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.73 E-value=1.2e-08 Score=96.73 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=69.1
Q ss_pred CCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCC
Q 019562 162 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (339)
Q Consensus 162 ~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 241 (339)
+.|.|+.+++.|||.+|+.|+++.|...
T Consensus 206 r~g~DL~~~~~Isl~~al~G~~~~i~~~---------------------------------------------------- 233 (306)
T PRK10266 206 IVGQDLEIVVPLAPWEAALGAKVTVPTL---------------------------------------------------- 233 (306)
T ss_pred EeCCceEEEEecCHHHHhCCCEEEeeCC----------------------------------------------------
Confidence 3478999999999999999998877432
Q ss_pred CccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 242 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 242 G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
...++|+||+|+.+|++++|+|+|++.. +..|||||+|+|..|+.+.-+...|+.+
T Consensus 234 ---------------------~g~v~v~ip~g~~~g~~~ri~g~G~p~~--~~~GdL~v~~~v~~P~~l~~~q~~l~~~ 289 (306)
T PRK10266 234 ---------------------KESILLTIPPGSQAGQRLRVKGKGLVSK--KQTGDLYAVLKIVMPPKPDEKTAALWQQ 289 (306)
T ss_pred ---------------------CccEEEEeCCCcCCCCEEEECCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1236899999999999999999999854 3579999999999999887766655544
No 97
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.68 E-value=4.1e-08 Score=78.34 Aligned_cols=61 Identities=36% Similarity=0.760 Sum_probs=49.0
Q ss_pred eeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEee
Q 019562 190 CFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 262 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~ 262 (339)
..+.|..|+|+|.. +|+.|+|+|.+.... .+++++..+|+.|.|+|+. .|+.|.|.+++..
T Consensus 40 ~~v~C~~C~GsG~~------~C~~C~G~G~v~~~~---~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ------VCRFCVGSGNVTVEL---GGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc------CCCCCcCcCeEEEEe---CCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 35789999999983 899999999887543 2345556899999999975 4999999987654
No 98
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.9e-08 Score=86.93 Aligned_cols=63 Identities=30% Similarity=0.489 Sum_probs=57.0
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccCchhhhh
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSV 104 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~~ 104 (339)
-..|+|++|.|.++.+.++||+.||+|++..|||+|++ +.|...|.-+..||..|-|+.-|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 35799999999999999999999999999999999985 4688999999999999999985543
No 99
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.6e-08 Score=89.77 Aligned_cols=67 Identities=36% Similarity=0.492 Sum_probs=59.9
Q ss_pred ccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHHhhccCchhhhhhhccc
Q 019562 43 GTDYYSTLNVRQ---NATLQEIKTSYRKLARKYHPDINK---SPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (339)
Q Consensus 43 ~~d~y~iLgv~~---~a~~~eIk~ayr~la~~~hPd~~~---~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G 109 (339)
..|+|.+|||+. .|++..|.+|.++.+.+||||+.. +.+..+.|+.|+.||+||+|+.+|..||.--
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 369999999997 489999999999999999999973 4567899999999999999999999999743
No 100
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.3e-07 Score=83.48 Aligned_cols=55 Identities=25% Similarity=0.567 Sum_probs=51.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHh-hccC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYE-VLSD 98 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~-vL~d 98 (339)
+.||.+|||..+|+.++++.||.+||+++|||...+....++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999888888999999999999 8873
No 101
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.25 E-value=1.5e-06 Score=88.98 Aligned_cols=71 Identities=49% Similarity=0.871 Sum_probs=67.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
.|||++|||+++|+.++||+|||+||++||||+++++.+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 69999999999999999999999999999999998878889999999999999999999999999987653
No 102
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-06 Score=91.54 Aligned_cols=56 Identities=38% Similarity=0.542 Sum_probs=48.0
Q ss_pred cccccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 019562 40 RAAGTDYYSTLNVRQN----ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~----a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~ 97 (339)
++..-+-|+||.|+-+ -..+.||++|+|||.+||||+| |+..++|..+++|||.|+
T Consensus 1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHHHHHH
Confidence 3445678999999864 2347899999999999999998 677899999999999998
No 103
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.06 E-value=4.4e-06 Score=72.86 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=39.1
Q ss_pred ecCCCCCCccEEEe--ecccccCCceEEeeceEEEEEeCCCCCCCCEEEEc
Q 019562 235 STCSKCGGDGKIII--DHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIR 283 (339)
Q Consensus 235 ~~C~~C~G~G~~~~--~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~ 283 (339)
.+|+.|+|+|+++. ++|+.|+|.|.+..+..+.+.+ .|+.+|++|++.
T Consensus 100 ~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 56777777777765 5788888888888889999999 999999999874
No 104
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.3e-05 Score=62.69 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=46.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCch
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDE 100 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~ 100 (339)
.+.--.||||++.++.+.||+|+||+....|||+..+| ..-.+||||+++|....
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGTS 109 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhccc
Confidence 34556699999999999999999999999999997554 44558999999997543
No 105
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.83 E-value=8.5e-06 Score=59.32 Aligned_cols=43 Identities=33% Similarity=0.872 Sum_probs=31.1
Q ss_pred eeeCCCCCCCCccCC---------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019562 191 FETCDSCGGTGAKSS---------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (339)
...|+.|+|+|.... ..+.+|+.|+|+|+++ .. .+|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~~----------~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-EK----------DPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--TS----------SB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-CC----------CCCCCCCCcC
Confidence 357999999999733 2368999999999987 22 7999999986
No 106
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.76 E-value=1.8e-05 Score=78.70 Aligned_cols=69 Identities=32% Similarity=0.742 Sum_probs=37.8
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeee--------cCCcceee-eecCCCCCCccEEE-eecccccCCceEEe
Q 019562 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQR--------TPFGLISQ-VSTCSKCGGDGKII-IDHCRRCGGNGEVQ 261 (339)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--------~~~g~~~~-~~~C~~C~G~G~~~-~~~C~~C~g~g~~~ 261 (339)
..|+.|+|+|.... ....|+.|+|+|+.-.... ..+-++.. ..+|+.|.|+|++. .+.|..|.|+|.+.
T Consensus 3 ~~C~~C~g~G~i~v-~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 3 KKCPECGGKGKIVV-GEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred ccccccCCCceEee-eeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 35777777766542 2456777777776521111 00111111 24677777777764 46677777766554
No 107
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00027 Score=59.20 Aligned_cols=72 Identities=22% Similarity=0.401 Sum_probs=56.5
Q ss_pred cccccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCCC------cchHHHHHHHHHHHhhccCchhhhhhhc--cc
Q 019562 40 RAAGTDYYSTLNVRQ--NATLQEIKTSYRKLARKYHPDINKS------PGAEEKFKEISSAYEVLSDDEKRSVYDR--FG 109 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~--~a~~~eIk~ayr~la~~~hPd~~~~------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~--~G 109 (339)
+....+||.++|... ...+..++.-|....+++|||+... ..+.+...++++||.+|.||.+|+.|=. +|
T Consensus 4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 445679999997554 4566667779999999999998532 2477889999999999999999999953 55
Q ss_pred cc
Q 019562 110 EA 111 (339)
Q Consensus 110 ~~ 111 (339)
.+
T Consensus 84 ~e 85 (168)
T KOG3192|consen 84 QE 85 (168)
T ss_pred CC
Confidence 43
No 108
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.92 E-value=0.00062 Score=54.50 Aligned_cols=41 Identities=32% Similarity=0.748 Sum_probs=32.4
Q ss_pred eCCCCCCCCccCC------CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 019562 193 TCDSCGGTGAKSS------NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (339)
Q Consensus 193 ~C~~C~G~G~~~~------~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 248 (339)
.|+.|+|+|.... ..+..|+.|+|+|+. .|+.|.|+|.+.+
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---------------~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---------------TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---------------eCCCCCCCEEEee
Confidence 7999999998632 226799999999962 4999999998753
No 109
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0013 Score=65.90 Aligned_cols=47 Identities=38% Similarity=0.802 Sum_probs=36.2
Q ss_pred eeeCCCCCCCCccCCCC------------------cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 019562 191 FETCDSCGGTGAKSSNC------------------IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~------------------~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 248 (339)
...|+-|+|+|...... ..+|+.|.|+|.+... .+|+.|+|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~-----------~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVY-----------DTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEE-----------eecccCCCceeEEe
Confidence 46799999999863211 3589999999987542 68999999998764
No 110
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.59 E-value=0.0015 Score=57.07 Aligned_cols=29 Identities=31% Similarity=0.822 Sum_probs=16.0
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 019562 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 247 (339)
.+|+.|+|+|+++... .+|+.|+|+|++.
T Consensus 100 ~~C~~C~G~G~~i~~~----------~~C~~C~G~G~v~ 128 (186)
T TIGR02642 100 CKCPRCRGTGLIQRRQ----------RECDTCAGTGRFR 128 (186)
T ss_pred CcCCCCCCeeEEecCC----------CCCCCCCCccEEe
Confidence 4555566666554421 3566666666654
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0038 Score=58.11 Aligned_cols=33 Identities=30% Similarity=0.749 Sum_probs=23.1
Q ss_pred ecCCCCCCccEEEeecccccCCceEEeeceEEEEEe
Q 019562 235 STCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 270 (339)
Q Consensus 235 ~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~I 270 (339)
..|+.|.|+|. .+|.+|.|+|.+.....+.|..
T Consensus 246 ~~C~tC~grG~---k~C~TC~gtgsll~~t~~vV~w 278 (406)
T KOG2813|consen 246 KECHTCKGRGK---KPCTTCSGTGSLLNYTRIVVYW 278 (406)
T ss_pred ccCCcccCCCC---cccccccCccceeeeEEEEEEe
Confidence 35777777764 4799999988777766665554
No 112
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0044 Score=53.89 Aligned_cols=53 Identities=38% Similarity=0.532 Sum_probs=46.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--------cchHHHHHHHHHHHhhc
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--------PGAEEKFKEISSAYEVL 96 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--------~~~~~~f~~i~~Ay~vL 96 (339)
.+.|++|++...+...+|+++|+++....|||+-.. ..+.+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999997431 24778899999999853
No 113
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0095 Score=51.80 Aligned_cols=63 Identities=30% Similarity=0.455 Sum_probs=49.4
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 45 d~y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
|++.++++.+.+ ..+.++..|+.+++.+|||+..... +.+.+..++.||.+|.+|.+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456666666654 4455888999999999999975332 44678999999999999999998854
No 114
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.015 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.893 Sum_probs=18.1
Q ss_pred ecCCCCCCccEEEeecccccCCceEEe
Q 019562 235 STCSKCGGDGKIIIDHCRRCGGNGEVQ 261 (339)
Q Consensus 235 ~~C~~C~G~G~~~~~~C~~C~g~g~~~ 261 (339)
..|..|+|+|+ ..|.+|.|+|...
T Consensus 235 ~~C~~C~G~G~---~~C~tC~grG~k~ 258 (406)
T KOG2813|consen 235 DLCYMCHGRGI---KECHTCKGRGKKP 258 (406)
T ss_pred chhhhccCCCc---ccCCcccCCCCcc
Confidence 67888888885 4788888877543
No 115
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.58 E-value=0.087 Score=52.63 Aligned_cols=44 Identities=32% Similarity=0.471 Sum_probs=32.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCCCcc--------hHHHHHHHHHHHhh
Q 019562 52 VRQNATLQEIKTSYRKLARKYHPDINKSPG--------AEEKFKEISSAYEV 95 (339)
Q Consensus 52 v~~~a~~~eIk~ayr~la~~~hPd~~~~~~--------~~~~f~~i~~Ay~v 95 (339)
+..=.+.+.|||||||..+..||||-+..+ +++.|-.+++||..
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 444468999999999999999999976432 44455555555553
No 116
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=93.57 E-value=0.14 Score=42.14 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=41.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchh
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEK 101 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~ 101 (339)
-..-..||+|++..+.++|.+.|.+|-...+|++. ++...=.+|..|.|.|..+.+
T Consensus 57 l~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 57 LDEARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999875 556666688999998875554
No 117
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.50 E-value=1 Score=42.44 Aligned_cols=51 Identities=35% Similarity=0.771 Sum_probs=37.1
Q ss_pred EEEEeeeeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 019562 185 GIEVSCFETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (339)
Q Consensus 185 ~v~~~~~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 247 (339)
.........|..|.|.|... .....+|..|.|.|.+.. ..|..|.|.|.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~------------~~c~~~~g~~~v~ 230 (288)
T KOG0715|consen 175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLR------------DNCQACSGAGQVR 230 (288)
T ss_pred cccccccccchhhhCcccccccccCCcceeecccccccceecc------------chHHHhhcchhhh
Confidence 33445578999999999321 112237999999998865 4599999999554
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=86.50 E-value=1.3 Score=39.19 Aligned_cols=38 Identities=26% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhcc
Q 019562 53 RQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLS 97 (339)
Q Consensus 53 ~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~ 97 (339)
+++|+.|||.+|++++..+|--| ++.-.+|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 57899999999999999998443 345568999999654
No 119
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=83.39 E-value=5.3 Score=35.30 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=40.2
Q ss_pred cCCCCCCccEE-EEeee-cC-Cccee-eeecCCCCCCccEEEee------c-------ccccCCceEEee------ceEE
Q 019562 210 SCKACWGRGGV-LKTQR-TP-FGLIS-QVSTCSKCGGDGKIIID------H-------CRRCGGNGEVQS------KRSM 266 (339)
Q Consensus 210 ~C~~C~G~G~~-~~~~~-~~-~g~~~-~~~~C~~C~G~G~~~~~------~-------C~~C~g~g~~~~------~~~l 266 (339)
.|+.|++.|.. +.... +| |+-+. ....|+.|+-+-.-+.. . ...=-.+-+++. --.|
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~~ev~~~g~~~p~r~~l~V~~~~DL~r~VvkS~tati~IPEl 81 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRSNDVKTLGAKEPKRYILKIDDEADLNRRVVKSESATIRIPEL 81 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCccceeEECCCCCCEEEEEEECChhcccceEEEcCCcEEEccce
Confidence 47777777753 33334 44 44333 34689999876443320 0 000011111111 1246
Q ss_pred EEEeCCC-CCCCCEEEEcc
Q 019562 267 KVVIPPG-VSNGATMQIRG 284 (339)
Q Consensus 267 ~v~Ip~G-~~~G~~i~l~g 284 (339)
.++|||| +..|..-++.|
T Consensus 82 ~lei~pg~~~~G~iTTVEG 100 (192)
T TIGR00310 82 GLDIEPGPTSGGFITNLEG 100 (192)
T ss_pred EEEECCCccCCceEEeeHh
Confidence 8899999 68888888855
No 120
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=82.94 E-value=1.4 Score=37.30 Aligned_cols=46 Identities=28% Similarity=0.643 Sum_probs=29.2
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccE
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 245 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 245 (339)
...|..|.|.+. .+|..|+|+=+++.......+. ...|+.|+=.|-
T Consensus 99 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~~~~~---~~rC~~Cnengl 144 (147)
T cd03031 99 GGVCEGCGGARF------VPCSECNGSCKVFAENATAAGG---FLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCCcCe------EECCCCCCcceEEeccCccccc---EEECCCCCcccc
Confidence 346899988765 5799999998886543111111 156777775553
No 121
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=82.66 E-value=0.94 Score=49.96 Aligned_cols=67 Identities=27% Similarity=0.475 Sum_probs=42.3
Q ss_pred cccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEE---EeecccccCC
Q 019562 180 FGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKI---IIDHCRRCGG 256 (339)
Q Consensus 180 ~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~---~~~~C~~C~g 256 (339)
.++...+.+. ...|+.|+.... ...|+.|+.+-.. ...|+.|+..=.. ....|+.|+.
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~-----~~fCP~CGs~te~-------------vy~CPsCGaev~~des~a~~CP~CGt 717 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETY-----ENRCPDCGTHTEP-------------VYVCPDCGAEVPPDESGRVECPRCDV 717 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCccc-----cccCcccCCcCCC-------------ceeCccCCCccCCCccccccCCCCCC
Confidence 4555556654 679999976532 3499999886421 1479999874110 1348999987
Q ss_pred ceEEeeceE
Q 019562 257 NGEVQSKRS 265 (339)
Q Consensus 257 ~g~~~~~~~ 265 (339)
.......++
T Consensus 718 plv~~~~~~ 726 (1337)
T PRK14714 718 ELTPYQRRT 726 (1337)
T ss_pred cccccceEE
Confidence 665444433
No 122
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=82.12 E-value=6.4 Score=33.70 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=15.2
Q ss_pred EEEEEeCCCCCCCCEEEEcc
Q 019562 265 SMKVVIPPGVSNGATMQIRG 284 (339)
Q Consensus 265 ~l~v~Ip~G~~~G~~i~l~g 284 (339)
.+.++||||...|..-++.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 46788888887787777755
No 123
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=1.7 Score=40.24 Aligned_cols=46 Identities=30% Similarity=0.675 Sum_probs=30.2
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 019562 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (339)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 247 (339)
..|..|.|.+. .+|..|+|+-+++... ...+. ..+|..|+=.|-+.
T Consensus 230 ~~C~~CGg~rF------lpC~~C~GS~kv~~~~-~~~~~---~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF------LPCSNCHGSCKVHEEE-EDDGG---VLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce------EecCCCCCceeeeeec-cCCCc---EEECcccCCCCcee
Confidence 56888877765 4688888888876531 11111 25788888888664
No 124
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=80.41 E-value=5.9 Score=29.15 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=34.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEI 89 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i 89 (339)
++|.-+++++++.|+..||+.|-++..+|..=-..++....+.|..-
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~A 48 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAA 48 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Confidence 46777889999999999999998888888754444444445555543
No 125
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=80.00 E-value=1.7 Score=41.54 Aligned_cols=52 Identities=40% Similarity=0.596 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 56 ATLQEIKTSYRKLARKYHPDINK-----SPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 56 a~~~eIk~ayr~la~~~hPd~~~-----~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
++..+|+.+|+..++..||++.. .....+.|++|.+||++|.+..+|..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence 57788999999999999999763 22567789999999999998666555554
No 126
>PF13446 RPT: A repeated domain in UCH-protein
Probab=78.06 E-value=3.6 Score=29.03 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=24.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHH
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLAR 70 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~ 70 (339)
.+-|+.|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999998766
No 127
>PRK04023 DNA polymerase II large subunit; Validated
Probab=77.48 E-value=1.2 Score=47.97 Aligned_cols=69 Identities=28% Similarity=0.582 Sum_probs=43.6
Q ss_pred eeeeec-ccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccc
Q 019562 175 FEESIF-GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRR 253 (339)
Q Consensus 175 lee~~~-G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~ 253 (339)
+.+|+. ++...+.+. ...|+.|+-.+ ....|+.|+..-.. ...|+.|+-... ...|+.
T Consensus 610 i~~A~~~~g~~eVEVg-~RfCpsCG~~t-----~~frCP~CG~~Te~-------------i~fCP~CG~~~~--~y~CPK 668 (1121)
T PRK04023 610 INKAAKYKGTIEVEIG-RRKCPSCGKET-----FYRRCPFCGTHTEP-------------VYRCPRCGIEVE--EDECEK 668 (1121)
T ss_pred HHHHHhcCCceeeccc-CccCCCCCCcC-----CcccCCCCCCCCCc-------------ceeCccccCcCC--CCcCCC
Confidence 455665 555555544 46899997653 45789999886211 157999954332 366999
Q ss_pred cCCceEEeece
Q 019562 254 CGGNGEVQSKR 264 (339)
Q Consensus 254 C~g~g~~~~~~ 264 (339)
|+.........
T Consensus 669 CG~El~~~s~~ 679 (1121)
T PRK04023 669 CGREPTPYSKR 679 (1121)
T ss_pred CCCCCCccceE
Confidence 98765444333
No 128
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.61 E-value=2.6 Score=39.04 Aligned_cols=38 Identities=34% Similarity=0.719 Sum_probs=30.6
Q ss_pred ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe--------ecccccCCceEEe
Q 019562 209 QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ 261 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~--------~~C~~C~g~g~~~ 261 (339)
..|..|+|.+++ +|..|+|..++.. .+|..|+=.|.+.
T Consensus 230 ~~C~~CGg~rFl---------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARFL---------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcceE---------------ecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 579999999874 7999999998876 4788888766543
No 129
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.18 E-value=2.2 Score=46.60 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=19.0
Q ss_pred ccCCCCCCccEEEEeeecCCcceee-eecCCCCCCccEE
Q 019562 209 QSCKACWGRGGVLKTQRTPFGLISQ-VSTCSKCGGDGKI 246 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~ 246 (339)
..|+.|.|.|.+.... .++.. ..+|+.|+|+.+.
T Consensus 737 G~C~~C~G~G~~~~~~----~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 737 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCccceEEEEEc----cCCCCcccCCCCcCCceeC
Confidence 4577777777654321 22222 2567777777653
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=74.22 E-value=3.1 Score=35.07 Aligned_cols=37 Identities=35% Similarity=0.741 Sum_probs=27.6
Q ss_pred cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe---------ecccccCCceE
Q 019562 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII---------DHCRRCGGNGE 259 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~---------~~C~~C~g~g~ 259 (339)
...|..|+|.+++ +|..|+|..++.. .+|+.|+=.|.
T Consensus 99 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl 144 (147)
T cd03031 99 GGVCEGCGGARFV---------------PCSECNGSCKVFAENATAAGGFLRCPECNENGL 144 (147)
T ss_pred CCCCCCCCCcCeE---------------ECCCCCCcceEEeccCcccccEEECCCCCcccc
Confidence 3569999999874 7999999988753 36777765543
No 131
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=71.97 E-value=1.2 Score=34.68 Aligned_cols=40 Identities=28% Similarity=0.648 Sum_probs=22.2
Q ss_pred cccCCCCCCccEEEEeeecCCc-ceeeeecCCCCCCccEEE
Q 019562 208 IQSCKACWGRGGVLKTQRTPFG-LISQVSTCSKCGGDGKII 247 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g-~~~~~~~C~~C~G~G~~~ 247 (339)
...|..|+|.|.++...++... .+-....|..|.|.|+..
T Consensus 5 S~~c~~c~g~g~al~~~~s~~~~G~pvfk~c~rcgg~G~sr 45 (95)
T PF03589_consen 5 SDSCRRCAGDGAALDMKQSKAQFGVPVFKDCERCGGRGYSR 45 (95)
T ss_pred CCCcCccCCcceeccHHHhHhccCCchhhhhhhhcCCCCCC
Confidence 3456777777765443332221 122226788888888654
No 132
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=68.84 E-value=14 Score=31.70 Aligned_cols=20 Identities=35% Similarity=0.604 Sum_probs=14.0
Q ss_pred EEEEEeCCCC-CCCCEEEEcc
Q 019562 265 SMKVVIPPGV-SNGATMQIRG 284 (339)
Q Consensus 265 ~l~v~Ip~G~-~~G~~i~l~g 284 (339)
.|.++||||. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 4578888887 5776666754
No 133
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=68.66 E-value=23 Score=26.26 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=34.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKE 88 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~ 88 (339)
++|--.+.++.+.||.+||..|-.+..+|..=-..++....+.|..
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~ 47 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDR 47 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHH
Confidence 4566667789999999999999999988886555554455555553
No 134
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=67.77 E-value=12 Score=30.87 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=15.4
Q ss_pred eEEEEEeCCCCCCCCEEEEccC
Q 019562 264 RSMKVVIPPGVSNGATMQIRGE 285 (339)
Q Consensus 264 ~~l~v~Ip~G~~~G~~i~l~g~ 285 (339)
..+++.-+.+.+.||.+.+.-+
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~i~ 63 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVEIP 63 (135)
T ss_pred EEEEecCCCCCCCCCEEEEEec
Confidence 4556666678888888877544
No 135
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=66.29 E-value=3.9 Score=42.85 Aligned_cols=52 Identities=23% Similarity=0.536 Sum_probs=35.5
Q ss_pred eeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEE
Q 019562 192 ETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV 260 (339)
Q Consensus 192 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~ 260 (339)
..|+.|+.. .....+-|+.|+.+-. ...|+.|+-.-..-...|..|+.....
T Consensus 2 ~~Cp~Cg~~---n~~~akFC~~CG~~l~--------------~~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 2 LICPQCQFE---NPNNNRFCQKCGTSLT--------------HKPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCc---CCCCCccccccCCCCC--------------CCcCCCCCCCCCcccccccccCCcccc
Confidence 479999533 3344578999954431 147999987766667899999875433
No 136
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=66.00 E-value=4.7 Score=44.15 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=17.8
Q ss_pred ccCCCCCCccEEEEeeecCCcceee-eecCCCCCCccEE
Q 019562 209 QSCKACWGRGGVLKTQRTPFGLISQ-VSTCSKCGGDGKI 246 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~ 246 (339)
..|+.|.|.|.+..... ++.. ..+|+.|+|+.+.
T Consensus 739 G~C~~C~G~G~~~~~~~----f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 739 GRCEACQGDGVIKIEMH----FLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCcccccceEEEEec----cCCCccccCccccCcccc
Confidence 35777777776543221 1111 1467777666543
No 137
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=59.74 E-value=6.3 Score=45.94 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=24.0
Q ss_pred cccCCCCCCccEEEEeeecCCcceeee-ecCCCCCCccEEE
Q 019562 208 IQSCKACWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKII 247 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~~ 247 (339)
...|+.|.|.|.+.... .++-.. .+|+.|+|+.+..
T Consensus 1607 ~GrC~~C~G~G~i~i~m----~fl~dv~~~C~~C~G~R~~~ 1643 (1809)
T PRK00635 1607 QGQCSDCWGLGYQWIDR----AFYALEKRPCPTCSGFRIQP 1643 (1809)
T ss_pred CCCCCCCccCceEEEec----ccCCCcccCCCCCCCcCCCH
Confidence 34699999999864432 223232 6899999987643
No 138
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=59.67 E-value=14 Score=25.21 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=8.7
Q ss_pred ccCCCCCCccEEEE
Q 019562 209 QSCKACWGRGGVLK 222 (339)
Q Consensus 209 ~~C~~C~G~G~~~~ 222 (339)
.+||-|+|....++
T Consensus 2 kPCPfCGg~~~~~~ 15 (53)
T TIGR03655 2 KPCPFCGGADVYLR 15 (53)
T ss_pred CCCCCCCCcceeeE
Confidence 46777777666443
No 139
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=59.52 E-value=9.7 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.780 Sum_probs=8.8
Q ss_pred CCCCCCccEEEeecccccC
Q 019562 237 CSKCGGDGKIIIDHCRRCG 255 (339)
Q Consensus 237 C~~C~G~G~~~~~~C~~C~ 255 (339)
|+.|...=......|+.|+
T Consensus 215 CslC~teW~~~R~~C~~Cg 233 (309)
T PRK03564 215 CNLCESEWHVVRVKCSNCE 233 (309)
T ss_pred cCCCCCcccccCccCCCCC
Confidence 4444444444444444444
No 140
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.21 E-value=5 Score=43.87 Aligned_cols=29 Identities=34% Similarity=0.732 Sum_probs=23.8
Q ss_pred ecCCCCCCccEEEe---------ecccccCCceEEeec
Q 019562 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQSK 263 (339)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~~ 263 (339)
-.|+.|.|.|++.. ..|+.|+|..+-.+.
T Consensus 737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 774 (924)
T TIGR00630 737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRET 774 (924)
T ss_pred CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHH
Confidence 46999999999874 589999998776553
No 141
>PRK05978 hypothetical protein; Provisional
Probab=58.89 E-value=5 Score=33.87 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=6.1
Q ss_pred ceeeeecCCCCC
Q 019562 230 LISQVSTCSKCG 241 (339)
Q Consensus 230 ~~~~~~~C~~C~ 241 (339)
++.....|+.|+
T Consensus 48 ~Lkv~~~C~~CG 59 (148)
T PRK05978 48 FLKPVDHCAACG 59 (148)
T ss_pred ccccCCCccccC
Confidence 333345666664
No 142
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=56.27 E-value=10 Score=40.61 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=21.8
Q ss_pred ccCCCCCCccEEEEeeecCCcceeee-ecCCCCCCccEEE
Q 019562 209 QSCKACWGRGGVLKTQRTPFGLISQV-STCSKCGGDGKII 247 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~~~~~g~~~~~-~~C~~C~G~G~~~ 247 (339)
..|..|.|.|.+.... .++-.. .+|+.|+|+-+-.
T Consensus 731 GRCe~C~GdG~ikIeM----~FLpdVyv~CevC~GkRYn~ 766 (935)
T COG0178 731 GRCEACQGDGVIKIEM----HFLPDVYVPCEVCHGKRYNR 766 (935)
T ss_pred cCCccccCCceEEEEe----ccCCCceeeCCCcCCccccc
Confidence 5788888888764433 122222 5788888886543
No 143
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=55.86 E-value=3.8 Score=43.63 Aligned_cols=51 Identities=24% Similarity=0.646 Sum_probs=0.0
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEe
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQ 261 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~ 261 (339)
...|+.|+-. +....|+.|+..-..+ ..|+.|+-. +..+.|++|+......
T Consensus 655 ~r~Cp~Cg~~-----t~~~~Cp~CG~~T~~~-------------~~Cp~C~~~--~~~~~C~~C~~~~~~~ 705 (900)
T PF03833_consen 655 RRRCPKCGKE-----TFYNRCPECGSHTEPV-------------YVCPDCGIE--VEEDECPKCGRETTSY 705 (900)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccCcccCCc-----chhhcCcccCCccccc-------------eeccccccc--cCccccccccccCccc
Confidence 4679999643 3457899997654321 579999753 3356899998765433
No 144
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=53.01 E-value=11 Score=41.46 Aligned_cols=29 Identities=34% Similarity=0.724 Sum_probs=23.6
Q ss_pred ecCCCCCCccEEEe---------ecccccCCceEEeec
Q 019562 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQSK 263 (339)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~~ 263 (339)
-.|+.|.|.|++.. ..|+.|+|.....+.
T Consensus 739 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~ 776 (943)
T PRK00349 739 GRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET 776 (943)
T ss_pred CCCCcccccceEEEEeccCCCccccCccccCccccccc
Confidence 36999999999874 479999998776554
No 145
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=52.11 E-value=8.7 Score=18.86 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhcc
Q 019562 85 KFKEISSAYEVLS 97 (339)
Q Consensus 85 ~f~~i~~Ay~vL~ 97 (339)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5778888888774
No 146
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=49.95 E-value=7.7 Score=45.27 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=26.2
Q ss_pred EEEe-eeeeCCCCCCCCccCC------CCcccCCCCCCccEE
Q 019562 186 IEVS-CFETCDSCGGTGAKSS------NCIQSCKACWGRGGV 220 (339)
Q Consensus 186 v~~~-~~~~C~~C~G~G~~~~------~~~~~C~~C~G~G~~ 220 (339)
+.++ ..-.|+.|+|.|.... ....+|+.|+|+.+.
T Consensus 1601 FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1601 FSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred ccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 4444 3557999999999633 236899999999874
No 147
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=48.74 E-value=13 Score=22.95 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=7.2
Q ss_pred ccCCCCCCccEE
Q 019562 209 QSCKACWGRGGV 220 (339)
Q Consensus 209 ~~C~~C~G~G~~ 220 (339)
..|..|++.|.+
T Consensus 4 ~~C~~C~~~~i~ 15 (33)
T PF08792_consen 4 KKCSKCGGNGIV 15 (33)
T ss_pred eEcCCCCCCeEE
Confidence 456666666644
No 148
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=47.02 E-value=13 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=12.8
Q ss_pred eeeCCCCCCCCccCCCCcccCCCC
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKAC 214 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C 214 (339)
++.|+.|+-.-+--.....+|+.|
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~C 32 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKC 32 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCC
Confidence 456777755544333344445555
No 149
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=46.99 E-value=41 Score=27.10 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=15.6
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccE
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (339)
+....|..|+-...........||.|++...
T Consensus 69 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~ 99 (117)
T PRK00564 69 KVELECKDCSHVFKPNALDYGVCEKCHSKNV 99 (117)
T ss_pred CCEEEhhhCCCccccCCccCCcCcCCCCCce
Confidence 4456788886443322222223666665543
No 150
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=46.86 E-value=14 Score=39.37 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=33.5
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCc
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (339)
...|..|+ ....|+.|...=...+.. ..-.|..|+-. ..+...|+.|++.
T Consensus 435 ~l~C~~Cg--------~v~~Cp~Cd~~lt~H~~~--------~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCG--------YIAECPNCDSPLTLHKAT--------GQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred eeecccCC--------CcccCCCCCcceEEecCC--------CeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 57899995 357899998762221111 11479999876 4566789999886
No 151
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=45.99 E-value=41 Score=26.98 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC-Cc----chHHHHHHHHHHHhhcc
Q 019562 54 QNATLQEIKTSYRKLARKYHPDINK-SP----GAEEKFKEISSAYEVLS 97 (339)
Q Consensus 54 ~~a~~~eIk~ayr~la~~~hPd~~~-~~----~~~~~f~~i~~Ay~vL~ 97 (339)
+..+..+++.|.|.+-++.|||.-. .| ..++-++.++.-.+.|.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~ 52 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLK 52 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHh
Confidence 3456788999999999999999643 22 24455666666666554
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=44.29 E-value=23 Score=33.58 Aligned_cols=21 Identities=24% Similarity=0.679 Sum_probs=11.2
Q ss_pred cCCCCCCccEEEeecccccCC
Q 019562 236 TCSKCGGDGKIIIDHCRRCGG 256 (339)
Q Consensus 236 ~C~~C~G~G~~~~~~C~~C~g 256 (339)
.|+.|...=......|+.|+.
T Consensus 212 ~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 212 SCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred EcCCCCCcccccCccCCCCCC
Confidence 355555554455555555554
No 153
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.83 E-value=8.1 Score=31.30 Aligned_cols=6 Identities=33% Similarity=1.320 Sum_probs=3.0
Q ss_pred ecCCCC
Q 019562 235 STCSKC 240 (339)
Q Consensus 235 ~~C~~C 240 (339)
..|..|
T Consensus 41 p~C~aC 46 (126)
T COG5349 41 PACEAC 46 (126)
T ss_pred chhhhc
Confidence 445555
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.48 E-value=19 Score=37.97 Aligned_cols=58 Identities=24% Similarity=0.516 Sum_probs=37.2
Q ss_pred EEEEEEee-----eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCc
Q 019562 183 QRGIEVSC-----FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (339)
Q Consensus 183 ~~~v~~~~-----~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (339)
..-+-+++ ...|..|+ ....|++|.+.=...+.. ..-.|..|+-.- ....|+.|++.
T Consensus 370 qvll~lnRrGyap~l~C~~Cg--------~~~~C~~C~~~L~~h~~~--------~~l~Ch~CG~~~--~p~~Cp~Cgs~ 431 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCR--------TPARCRHCTGPLGLPSAG--------GTPRCRWCGRAA--PDWRCPRCGSD 431 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCc--------CeeECCCCCCceeEecCC--------CeeECCCCcCCC--cCccCCCCcCC
Confidence 44455554 56788884 457899998754332211 114699998653 47789999876
Q ss_pred e
Q 019562 258 G 258 (339)
Q Consensus 258 g 258 (339)
.
T Consensus 432 ~ 432 (665)
T PRK14873 432 R 432 (665)
T ss_pred c
Confidence 3
No 155
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=41.31 E-value=92 Score=27.61 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=7.8
Q ss_pred ecCCCCCCccEEE
Q 019562 235 STCSKCGGDGKII 247 (339)
Q Consensus 235 ~~C~~C~G~G~~~ 247 (339)
..|..|+....+.
T Consensus 120 l~C~aCGa~~~v~ 132 (201)
T PRK12336 120 LRCDACGAHRPVK 132 (201)
T ss_pred EEcccCCCCcccc
Confidence 4577776665543
No 156
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=39.02 E-value=36 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhCC
Q 019562 58 LQEIKTSYRKLARKYHP 74 (339)
Q Consensus 58 ~~eIk~ayr~la~~~hP 74 (339)
.++.|.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 37789999999999994
No 157
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.44 E-value=23 Score=29.06 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=15.1
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCC
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWG 216 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G 216 (339)
+..|+.|.-+-+--......|+.|+-
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~ 34 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGE 34 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCC
Confidence 45677776555544445556666643
No 158
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=37.40 E-value=17 Score=33.19 Aligned_cols=14 Identities=29% Similarity=0.852 Sum_probs=8.3
Q ss_pred ccCCCCCCccEEEE
Q 019562 209 QSCKACWGRGGVLK 222 (339)
Q Consensus 209 ~~C~~C~G~G~~~~ 222 (339)
.+||.|.|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 35666666666544
No 159
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=36.61 E-value=79 Score=26.75 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=13.0
Q ss_pred eEEEEEeCCCCCCCCEEEEc
Q 019562 264 RSMKVVIPPGVSNGATMQIR 283 (339)
Q Consensus 264 ~~l~v~Ip~G~~~G~~i~l~ 283 (339)
..+++.-+.+.+.||.+.+.
T Consensus 49 ~~~~v~~~~~~~vGD~V~v~ 68 (154)
T PRK10862 49 HQLVVPSSQPLVPGQKVELG 68 (154)
T ss_pred eEEEecCCCCCCCCCEEEEe
Confidence 34556666667777777764
No 160
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=36.28 E-value=59 Score=21.52 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHH--HHHHhhc--cCchhhhhhhc
Q 019562 60 EIKTSYRKLARKYHPDINKSPGAEEKFKEI--SSAYEVL--SDDEKRSVYDR 107 (339)
Q Consensus 60 eIk~ayr~la~~~hPd~~~~~~~~~~f~~i--~~Ay~vL--~d~~~r~~yd~ 107 (339)
+.+.+|++|..... .++...=.+.-..| ...|..| ++..++.+|+.
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~e 50 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEE 50 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHh
Confidence 46788998877765 43322111111111 1155555 45555556554
No 161
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=35.97 E-value=32 Score=37.02 Aligned_cols=28 Identities=36% Similarity=0.754 Sum_probs=22.3
Q ss_pred ecCCCCCCccEEEe---------ecccccCCceEEee
Q 019562 235 STCSKCGGDGKIII---------DHCRRCGGNGEVQS 262 (339)
Q Consensus 235 ~~C~~C~G~G~~~~---------~~C~~C~g~g~~~~ 262 (339)
-.|..|.|.|.+.. .+|..|+|+-+-.+
T Consensus 731 GRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~E 767 (935)
T COG0178 731 GRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRE 767 (935)
T ss_pred cCCccccCCceEEEEeccCCCceeeCCCcCCcccccc
Confidence 57999999999864 47999999765443
No 162
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=35.25 E-value=29 Score=29.26 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=8.1
Q ss_pred ecCCCCCCccEEE
Q 019562 235 STCSKCGGDGKII 247 (339)
Q Consensus 235 ~~C~~C~G~G~~~ 247 (339)
.+|+.|+++.+.+
T Consensus 131 ~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 131 PPCPKCGHTEFTR 143 (146)
T ss_pred CCCCCCCCCeeee
Confidence 5677777666543
No 163
>PF14353 CpXC: CpXC protein
Probab=34.24 E-value=26 Score=28.41 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=7.4
Q ss_pred ecCCCCCCccEE
Q 019562 235 STCSKCGGDGKI 246 (339)
Q Consensus 235 ~~C~~C~G~G~~ 246 (339)
.+||.|+....+
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 467777666543
No 164
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=34.22 E-value=48 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=17.0
Q ss_pred ccCCCCCCccEE-EEeeecC-Ccce-eeeecCCCCCCcc
Q 019562 209 QSCKACWGRGGV-LKTQRTP-FGLI-SQVSTCSKCGGDG 244 (339)
Q Consensus 209 ~~C~~C~G~G~~-~~~~~~~-~g~~-~~~~~C~~C~G~G 244 (339)
..|+.|+..|.. +....+| |+-+ .....|+.|+-+-
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk~ 40 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGYKN 40 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--EE
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCCEe
Confidence 457778887753 3333444 3322 2235788886543
No 165
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.38 E-value=38 Score=27.11 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=15.3
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccE
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (339)
+....|..|+....... ....||.|++...
T Consensus 68 p~~~~C~~Cg~~~~~~~-~~~~CP~Cgs~~~ 97 (113)
T PRK12380 68 PAQAWCWDCSQVVEIHQ-HDAQCPHCHGERL 97 (113)
T ss_pred CcEEEcccCCCEEecCC-cCccCcCCCCCCc
Confidence 44567888864433321 1223666655543
No 166
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=33.32 E-value=27 Score=31.80 Aligned_cols=14 Identities=43% Similarity=0.926 Sum_probs=12.3
Q ss_pred ecCCCCCCccEEEe
Q 019562 235 STCSKCGGDGKIII 248 (339)
Q Consensus 235 ~~C~~C~G~G~~~~ 248 (339)
.+||.|.|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 58999999999865
No 167
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=32.73 E-value=71 Score=20.46 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=8.1
Q ss_pred cCCCCCCccEEEEe
Q 019562 210 SCKACWGRGGVLKT 223 (339)
Q Consensus 210 ~C~~C~G~G~~~~~ 223 (339)
.|+.|+....+..+
T Consensus 2 ~Cp~C~~~~a~~~q 15 (40)
T smart00440 2 PCPKCGNREATFFQ 15 (40)
T ss_pred cCCCCCCCeEEEEE
Confidence 46777666655443
No 168
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.32 E-value=33 Score=34.92 Aligned_cols=51 Identities=29% Similarity=0.558 Sum_probs=29.6
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCce
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 258 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 258 (339)
...|..|+ ....|+.|.+.=...+.. ..-.|..|+-+- .....|+.|++..
T Consensus 213 ~~~C~~Cg--------~~~~C~~C~~~l~~h~~~--------~~l~Ch~Cg~~~-~~~~~Cp~C~s~~ 263 (505)
T TIGR00595 213 NLLCRSCG--------YILCCPNCDVSLTYHKKE--------GKLRCHYCGYQE-PIPKTCPQCGSED 263 (505)
T ss_pred eeEhhhCc--------CccCCCCCCCceEEecCC--------CeEEcCCCcCcC-CCCCCCCCCCCCe
Confidence 45788884 356789997643221111 114688886333 2346788887653
No 169
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=32.32 E-value=90 Score=24.61 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=17.9
Q ss_pred ecCCCCCCccEEEe---ecccccCCc
Q 019562 235 STCSKCGGDGKIII---DHCRRCGGN 257 (339)
Q Consensus 235 ~~C~~C~G~G~~~~---~~C~~C~g~ 257 (339)
+.|.-|+++|+..+ ..|..|+-.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~ 61 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVR 61 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCE
Confidence 78999988888864 578888653
No 170
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.72 E-value=22 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.894 Sum_probs=6.9
Q ss_pred CCCCCCccEEEeeccccc
Q 019562 237 CSKCGGDGKIIIDHCRRC 254 (339)
Q Consensus 237 C~~C~G~G~~~~~~C~~C 254 (339)
|+.|...=-.....|+.|
T Consensus 3 CP~C~~~V~~~~~~Cp~C 20 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHC 20 (26)
T ss_pred CCCCcCCchhhcCcCCCC
Confidence 444433332333344444
No 171
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=31.55 E-value=31 Score=22.06 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=3.7
Q ss_pred ecCCCCCC
Q 019562 235 STCSKCGG 242 (339)
Q Consensus 235 ~~C~~C~G 242 (339)
..|+.|+|
T Consensus 20 d~C~~C~G 27 (41)
T PF13453_consen 20 DVCPSCGG 27 (41)
T ss_pred EECCCCCe
Confidence 34555543
No 172
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=31.53 E-value=43 Score=21.02 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=5.0
Q ss_pred eeCCCCCCCC
Q 019562 192 ETCDSCGGTG 201 (339)
Q Consensus 192 ~~C~~C~G~G 201 (339)
+.||.|+..-
T Consensus 3 i~CP~C~~~f 12 (37)
T PF13719_consen 3 ITCPNCQTRF 12 (37)
T ss_pred EECCCCCceE
Confidence 3466665443
No 173
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.47 E-value=49 Score=28.15 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=5.4
Q ss_pred cCCCCCCcc
Q 019562 210 SCKACWGRG 218 (339)
Q Consensus 210 ~C~~C~G~G 218 (339)
.||.|+..-
T Consensus 2 ~cp~c~~~~ 10 (154)
T PRK00464 2 RCPFCGHPD 10 (154)
T ss_pred cCCCCCCCC
Confidence 466666655
No 174
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=30.04 E-value=34 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=14.3
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCccE
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRGG 219 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 219 (339)
+....|..|+-........ ..||.|++...
T Consensus 68 p~~~~C~~Cg~~~~~~~~~-~~CP~Cgs~~~ 97 (113)
T PF01155_consen 68 PARARCRDCGHEFEPDEFD-FSCPRCGSPDV 97 (113)
T ss_dssp --EEEETTTS-EEECHHCC-HH-SSSSSS-E
T ss_pred CCcEECCCCCCEEecCCCC-CCCcCCcCCCc
Confidence 4456788886555433222 45666666554
No 175
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.03 E-value=31 Score=36.56 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=29.5
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCce
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 258 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 258 (339)
...|..|+ ....|+.|.+.=..... ...-.|..|+-+- .....|+.|++..
T Consensus 381 ~~~C~~Cg--------~~~~C~~C~~~l~~h~~--------~~~l~Ch~Cg~~~-~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 381 FLLCRDCG--------WVAECPHCDASLTLHRF--------QRRLRCHHCGYQE-PIPKACPECGSTD 431 (679)
T ss_pred ceEhhhCc--------CccCCCCCCCceeEECC--------CCeEECCCCcCCC-CCCCCCCCCcCCe
Confidence 56788884 34678888873221111 0114688887442 3346788887653
No 176
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=29.72 E-value=76 Score=25.42 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=14.0
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCcc
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 218 (339)
+....|+.|+-.-... .....||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~-~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 68 PVECECEDCSEEVSPE-IDLYRCPKCHGIM 96 (115)
T ss_pred CcEEEcccCCCEEecC-CcCccCcCCcCCC
Confidence 3456788886332221 1123455555544
No 177
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=29.38 E-value=1.1e+02 Score=23.82 Aligned_cols=52 Identities=23% Similarity=0.542 Sum_probs=33.0
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhh-cccc
Q 019562 51 NVRQNA-TLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYD-RFGE 110 (339)
Q Consensus 51 gv~~~a-~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd-~~G~ 110 (339)
|+++++ .-.+|-+.+..+...+++ ...+.+..|.+.| +.||.-++.|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~------~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG------GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS---------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 456654 234466677777777776 3346888888888 68888888888 6654
No 178
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=28.55 E-value=40 Score=20.94 Aligned_cols=7 Identities=43% Similarity=1.308 Sum_probs=3.9
Q ss_pred ecCCCCC
Q 019562 235 STCSKCG 241 (339)
Q Consensus 235 ~~C~~C~ 241 (339)
..|+.|+
T Consensus 23 ~vC~~Cg 29 (34)
T PF14803_consen 23 LVCPACG 29 (34)
T ss_dssp EEETTTT
T ss_pred eECCCCC
Confidence 4566664
No 179
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=28.12 E-value=94 Score=21.56 Aligned_cols=12 Identities=17% Similarity=0.598 Sum_probs=6.8
Q ss_pred cccccCCceEEe
Q 019562 250 HCRRCGGNGEVQ 261 (339)
Q Consensus 250 ~C~~C~g~g~~~ 261 (339)
.|+.|.-.-.+.
T Consensus 30 yCpKCK~EtlI~ 41 (55)
T PF14205_consen 30 YCPKCKQETLID 41 (55)
T ss_pred cCCCCCceEEEE
Confidence 577776544443
No 180
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=27.90 E-value=79 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=16.9
Q ss_pred cccccccc---cccCCCccccccccccccccCcccccc
Q 019562 17 STSFSFKW---NYCSGNNRSHRRGMIRAAGTDYYSTLN 51 (339)
Q Consensus 17 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~y~iLg 51 (339)
-||.+|.+ ..++..-.+.+..+......|.|++|-
T Consensus 30 r~~~~f~rpktl~l~r~pky~r~~~~~~~~md~~~IIk 67 (145)
T PTZ00191 30 RTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIK 67 (145)
T ss_pred eecceecCCccccCCCCCCCcccccCCCCCCchhhhhh
Confidence 35555533 222333333344445555667777664
No 181
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=27.46 E-value=45 Score=21.88 Aligned_cols=6 Identities=50% Similarity=1.619 Sum_probs=3.0
Q ss_pred eCCCCC
Q 019562 193 TCDSCG 198 (339)
Q Consensus 193 ~C~~C~ 198 (339)
.|+.|+
T Consensus 5 ~C~~CG 10 (46)
T PRK00398 5 KCARCG 10 (46)
T ss_pred ECCCCC
Confidence 455554
No 182
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=27.15 E-value=56 Score=26.16 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=14.1
Q ss_pred eeeeeCCCCCCCCccCCCCcccCCCCCCcc
Q 019562 189 SCFETCDSCGGTGAKSSNCIQSCKACWGRG 218 (339)
Q Consensus 189 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G 218 (339)
+....|..|+-.-.........||.|++..
T Consensus 68 p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred CcEEEcccCCCeeecCCccCCcCcCcCCCC
Confidence 345678888633222211223455555544
No 183
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=26.93 E-value=31 Score=34.19 Aligned_cols=13 Identities=31% Similarity=0.974 Sum_probs=9.5
Q ss_pred ecCCCCCCccEEE
Q 019562 235 STCSKCGGDGKII 247 (339)
Q Consensus 235 ~~C~~C~G~G~~~ 247 (339)
.+|+.|+|+|++.
T Consensus 391 ~~Cp~C~G~G~v~ 403 (414)
T TIGR00757 391 TVCPHCSGTGIVK 403 (414)
T ss_pred CCCCCCcCeeEEc
Confidence 5677787777664
No 184
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=26.93 E-value=1.1e+02 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=14.6
Q ss_pred EEEeCCC--CCCCCEEEEccC
Q 019562 267 KVVIPPG--VSNGATMQIRGE 285 (339)
Q Consensus 267 ~v~Ip~G--~~~G~~i~l~g~ 285 (339)
.+++||| ++-|+.|.+.++
T Consensus 66 ~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 66 EVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred eEecCCCCeEecCCEEEEcCC
Confidence 6778887 777888877665
No 185
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=26.28 E-value=49 Score=26.64 Aligned_cols=19 Identities=37% Similarity=0.994 Sum_probs=9.0
Q ss_pred CCCCCCccEEEeecccccC
Q 019562 237 CSKCGGDGKIIIDHCRRCG 255 (339)
Q Consensus 237 C~~C~G~G~~~~~~C~~C~ 255 (339)
||.|++.=.+....|..|+
T Consensus 1 CPvCg~~l~vt~l~C~~C~ 19 (113)
T PF09862_consen 1 CPVCGGELVVTRLKCPSCG 19 (113)
T ss_pred CCCCCCceEEEEEEcCCCC
Confidence 4444444444444555554
No 186
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=26.24 E-value=84 Score=19.97 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=7.7
Q ss_pred cCCCCCCccEEEEeee
Q 019562 210 SCKACWGRGGVLKTQR 225 (339)
Q Consensus 210 ~C~~C~G~G~~~~~~~ 225 (339)
.|+.|+....+..+.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q 17 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQ 17 (39)
T ss_dssp --SSS-SSEEEEEEES
T ss_pred CCcCCCCCeEEEEEee
Confidence 4777777666555443
No 187
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=25.52 E-value=1.3e+02 Score=21.57 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 63 TSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 63 ~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
+..|...++-||+. ...+..+.|.+.|..|++.++...+|.
T Consensus 14 ~~~r~~~~~~~p~~----~~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLK----ENRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455556678874 455778899999999998888665554
No 188
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.40 E-value=53 Score=18.79 Aligned_cols=7 Identities=43% Similarity=1.336 Sum_probs=4.4
Q ss_pred ecCCCCC
Q 019562 235 STCSKCG 241 (339)
Q Consensus 235 ~~C~~C~ 241 (339)
.+|+.|+
T Consensus 17 f~CPnCG 23 (24)
T PF07754_consen 17 FPCPNCG 23 (24)
T ss_pred EeCCCCC
Confidence 4677764
No 189
>PRK11032 hypothetical protein; Provisional
Probab=24.82 E-value=57 Score=27.95 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhCCC
Q 019562 60 EIKTSYRKLARKYHPD 75 (339)
Q Consensus 60 eIk~ayr~la~~~hPd 75 (339)
.++++|.++.....-+
T Consensus 3 k~~~~Y~~ll~~v~~~ 18 (160)
T PRK11032 3 KVAQYYRELVASLTER 18 (160)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4677888887655544
No 190
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=24.75 E-value=97 Score=22.24 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 019562 194 CDSCGGT 200 (339)
Q Consensus 194 C~~C~G~ 200 (339)
|++|..+
T Consensus 3 C~KCg~~ 9 (64)
T PF09855_consen 3 CPKCGNE 9 (64)
T ss_pred CCCCCCc
Confidence 5555443
No 191
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=24.70 E-value=46 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.535 Sum_probs=27.9
Q ss_pred eeeCCCCCCCCcc-CCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019562 191 FETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (339)
Q Consensus 191 ~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 243 (339)
...|+.|...=.. .....-.|..|+-+..+. ..|+.|+++
T Consensus 444 v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p-------------~~Cp~Cgs~ 484 (730)
T COG1198 444 IAECPNCDSPLTLHKATGQLRCHYCGYQEPIP-------------QSCPECGSE 484 (730)
T ss_pred cccCCCCCcceEEecCCCeeEeCCCCCCCCCC-------------CCCCCCCCC
Confidence 4579999765332 234567999997764321 689999998
No 192
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.11 E-value=1e+02 Score=25.17 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=38.2
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchh
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEK 101 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~ 101 (339)
-..--.||+|+...+.+||.+.|..|-.-..+.+. +....=.++-.|-|-|..+.+
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskG---GSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKG---GSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccC---cceeehHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999887666553 222222345556665544433
No 193
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10 E-value=60 Score=24.30 Aligned_cols=8 Identities=63% Similarity=1.452 Sum_probs=4.1
Q ss_pred ecccccCC
Q 019562 249 DHCRRCGG 256 (339)
Q Consensus 249 ~~C~~C~g 256 (339)
+.|++|.|
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 44555554
No 194
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.06 E-value=1.4e+02 Score=20.21 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 62 KTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 62 k~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.+.++...+.-||+. ...+..+.+.+.|..|++.++....+.
T Consensus 12 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~W~~l~~~~k~~y~~~ 53 (66)
T cd00084 12 SQEHRAEVKAENPGL----SVGEISKILGEMWKSLSEEEKKKYEEK 53 (66)
T ss_pred HHHHHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566667778874 356788899999999998777655554
No 195
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.73 E-value=42 Score=36.85 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=26.1
Q ss_pred CcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCce
Q 019562 207 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 258 (339)
Q Consensus 207 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g 258 (339)
....|+.|+-.+. ...|+.|+..- .....|+.|+...
T Consensus 625 g~RfCpsCG~~t~--------------~frCP~CG~~T-e~i~fCP~CG~~~ 661 (1121)
T PRK04023 625 GRRKCPSCGKETF--------------YRRCPFCGTHT-EPVYRCPRCGIEV 661 (1121)
T ss_pred cCccCCCCCCcCC--------------cccCCCCCCCC-CcceeCccccCcC
Confidence 3679999977642 16899999873 3345899996543
No 196
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=23.72 E-value=66 Score=22.46 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=13.8
Q ss_pred EEEEeCCCCCCCCEEEEccC
Q 019562 266 MKVVIPPGVSNGATMQIRGE 285 (339)
Q Consensus 266 l~v~Ip~G~~~G~~i~l~g~ 285 (339)
++|.||+-++.|++|++.-+
T Consensus 30 ~~i~VP~FI~~Gd~I~VdT~ 49 (56)
T PF09285_consen 30 AEIQVPLFIEEGDKIKVDTR 49 (56)
T ss_dssp -EEEEETT--TT-EEEEETT
T ss_pred CEEEccceecCCCEEEEECC
Confidence 57999999999999998643
No 197
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=23.38 E-value=37 Score=20.52 Aligned_cols=8 Identities=38% Similarity=1.132 Sum_probs=1.6
Q ss_pred eCCCCCCC
Q 019562 193 TCDSCGGT 200 (339)
Q Consensus 193 ~C~~C~G~ 200 (339)
.|+.|+..
T Consensus 4 ~Cp~C~se 11 (30)
T PF08274_consen 4 KCPLCGSE 11 (30)
T ss_dssp --TTT---
T ss_pred CCCCCCCc
Confidence 35555433
No 198
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=23.26 E-value=36 Score=26.88 Aligned_cols=24 Identities=33% Similarity=0.841 Sum_probs=14.7
Q ss_pred eeeCCCCCCCCccCCCCcccCCCC
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKAC 214 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C 214 (339)
...|.-|.++|.........|..|
T Consensus 35 ~daCeiC~~~GY~q~g~~lvC~~C 58 (102)
T PF10080_consen 35 FDACEICGPKGYYQEGDQLVCKNC 58 (102)
T ss_pred EEeccccCCCceEEECCEEEEecC
Confidence 346777766666655555556555
No 199
>PRK05580 primosome assembly protein PriA; Validated
Probab=22.96 E-value=53 Score=34.79 Aligned_cols=42 Identities=17% Similarity=0.447 Sum_probs=26.9
Q ss_pred eeeeCCCCCCCCcc-CCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019562 190 CFETCDSCGGTGAK-SSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (339)
Q Consensus 190 ~~~~C~~C~G~G~~-~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (339)
....|+.|.+.=.. .....-.|..|+-+-.. ...|+.|++.-
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~-------------~~~Cp~Cg~~~ 431 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQEPI-------------PKACPECGSTD 431 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCCCC-------------CCCCCCCcCCe
Confidence 35679999874221 23345689999754321 15799998874
No 200
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.74 E-value=65 Score=34.10 Aligned_cols=40 Identities=23% Similarity=0.522 Sum_probs=27.0
Q ss_pred eeeCCCCCCCCccC-CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019562 191 FETCDSCGGTGAKS-SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (339)
Q Consensus 191 ~~~C~~C~G~G~~~-~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (339)
...|+.|.+.=... ....-.|..|+-.- . ...|+.|+++-
T Consensus 392 ~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-~-------------p~~Cp~Cgs~~ 432 (665)
T PRK14873 392 PARCRHCTGPLGLPSAGGTPRCRWCGRAA-P-------------DWRCPRCGSDR 432 (665)
T ss_pred eeECCCCCCceeEecCCCeeECCCCcCCC-c-------------CccCCCCcCCc
Confidence 56899998764432 23467899996431 1 16899999874
No 201
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=22.66 E-value=73 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=17.3
Q ss_pred EEEEeCCCCCCCCEEEEccC
Q 019562 266 MKVVIPPGVSNGATMQIRGE 285 (339)
Q Consensus 266 l~v~Ip~G~~~G~~i~l~g~ 285 (339)
++|.||+-++.|++|++.-+
T Consensus 30 ~~i~VP~FI~~Gd~I~V~T~ 49 (56)
T smart00841 30 AVVQVPLFINEGDKIKVDTR 49 (56)
T ss_pred CEEEcCCcccCCCEEEEECC
Confidence 58999999999999988644
No 202
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=22.34 E-value=58 Score=22.91 Aligned_cols=8 Identities=50% Similarity=1.522 Sum_probs=4.1
Q ss_pred ecccccCC
Q 019562 249 DHCRRCGG 256 (339)
Q Consensus 249 ~~C~~C~g 256 (339)
+.|+.|++
T Consensus 18 e~Cp~CG~ 25 (59)
T COG2260 18 EKCPVCGG 25 (59)
T ss_pred ccCCCCCC
Confidence 45555544
No 203
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.24 E-value=78 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.620 Sum_probs=5.5
Q ss_pred eeCCCCCCCC
Q 019562 192 ETCDSCGGTG 201 (339)
Q Consensus 192 ~~C~~C~G~G 201 (339)
+.|+.|+..-
T Consensus 3 i~Cp~C~~~y 12 (36)
T PF13717_consen 3 ITCPNCQAKY 12 (36)
T ss_pred EECCCCCCEE
Confidence 4566665443
No 204
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=21.95 E-value=88 Score=25.96 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=6.1
Q ss_pred cCCCCCCccEE
Q 019562 210 SCKACWGRGGV 220 (339)
Q Consensus 210 ~C~~C~G~G~~ 220 (339)
.|..|...|..
T Consensus 54 ~C~~Cg~~GH~ 64 (148)
T PTZ00368 54 SCYNCGKTGHL 64 (148)
T ss_pred ccCCCCCcCcC
Confidence 45556555544
No 205
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.93 E-value=1.6e+02 Score=20.06 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 65 YRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 65 yr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
.|.-.+.-||+. ...+..+.|.+.|..|++.++....+.+
T Consensus 15 ~r~~~~~~~p~~----~~~~i~~~~~~~W~~ls~~eK~~y~~~a 54 (66)
T cd01390 15 QRPKLKKENPDA----SVTEVTKILGEKWKELSEEEKKKYEEKA 54 (66)
T ss_pred HHHHHHHHCcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344445567773 4667888999999999987776655543
No 206
>PF12773 DZR: Double zinc ribbon
Probab=21.79 E-value=73 Score=20.99 Aligned_cols=20 Identities=25% Similarity=0.831 Sum_probs=10.4
Q ss_pred ecCCCCCCccEEEeeccccc
Q 019562 235 STCSKCGGDGKIIIDHCRRC 254 (339)
Q Consensus 235 ~~C~~C~G~G~~~~~~C~~C 254 (339)
..|+.|+..-......|..|
T Consensus 30 ~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 30 KICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred CCCcCCcCCCcCCcCccCcc
Confidence 45777765533334455554
No 207
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.66 E-value=28 Score=32.64 Aligned_cols=8 Identities=38% Similarity=1.286 Sum_probs=3.7
Q ss_pred ecccccCC
Q 019562 249 DHCRRCGG 256 (339)
Q Consensus 249 ~~C~~C~g 256 (339)
..|..|++
T Consensus 239 e~C~~C~~ 246 (290)
T PF04216_consen 239 EVCESCGS 246 (290)
T ss_dssp EEETTTTE
T ss_pred EECCcccc
Confidence 34555543
No 208
>PHA02998 RNA polymerase subunit; Provisional
Probab=21.29 E-value=1.2e+02 Score=26.34 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=16.0
Q ss_pred cccCCCCCCccEEEEeeecCCc--ceeeeecCCCCC
Q 019562 208 IQSCKACWGRGGVLKTQRTPFG--LISQVSTCSKCG 241 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g--~~~~~~~C~~C~ 241 (339)
..+|+.|++......+.++... .++..-.|..|+
T Consensus 143 ~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG 178 (195)
T PHA02998 143 NTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCK 178 (195)
T ss_pred CCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCC
Confidence 3566777666655443333211 122224566554
No 209
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=21.00 E-value=1.9e+02 Score=20.87 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 62 KTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 62 k~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.+.++...+.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 13 ~~~~r~~~~~~~p~~----~~~eisk~~g~~Wk~ls~eeK~~y~~~ 54 (77)
T cd01389 13 RQDKHAQLKTENPGL----TNNEISRIIGRMWRSESPEVKAYYKEL 54 (77)
T ss_pred HHHHHHHHHHHCCCC----CHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 456677777888875 355788889999999998777654444
No 210
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=20.84 E-value=79 Score=20.44 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=2.8
Q ss_pred eeCCCCCCC
Q 019562 192 ETCDSCGGT 200 (339)
Q Consensus 192 ~~C~~C~G~ 200 (339)
..||.|.|+
T Consensus 4 ~pCP~CGG~ 12 (40)
T PF08273_consen 4 GPCPICGGK 12 (40)
T ss_dssp E--TTTT-T
T ss_pred CCCCCCcCc
Confidence 345555443
No 211
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=20.62 E-value=55 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.637 Sum_probs=25.0
Q ss_pred cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCc
Q 019562 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGN 257 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~ 257 (339)
...|+.|+..... ..|+.|+..-.. .-.|+.|+..
T Consensus 667 ~rkCPkCG~~t~~--------------~fCP~CGs~te~-vy~CPsCGae 701 (1337)
T PRK14714 667 RRRCPSCGTETYE--------------NRCPDCGTHTEP-VYVCPDCGAE 701 (1337)
T ss_pred EEECCCCCCcccc--------------ccCcccCCcCCC-ceeCccCCCc
Confidence 4789999775421 479999887543 3389999874
Done!