Query 019562
Match_columns 339
No_of_seqs 301 out of 2489
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 2.4E-49 8.3E-54 374.6 11.8 225 42-337 26-254 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 2.4E-41 8.2E-46 308.7 17.5 174 161-337 8-184 (248)
3 3agx_A DNAJ homolog subfamily 99.9 1.3E-26 4.5E-31 201.6 11.3 114 164-337 2-115 (181)
4 2q2g_A HSP40 protein, heat sho 99.9 2.5E-25 8.5E-30 193.5 12.0 113 164-337 3-115 (180)
5 1c3g_A Heat shock protein 40; 99.9 9.4E-24 3.2E-28 181.9 11.1 109 165-337 1-109 (170)
6 1bq0_A DNAJ, HSP40; chaperone, 99.9 1.8E-24 6.2E-29 171.3 5.7 97 43-139 2-99 (103)
7 1hdj_A Human HSP40, HDJ-1; mol 99.9 5.8E-23 2E-27 154.0 7.2 73 43-115 2-74 (77)
8 2ctr_A DNAJ homolog subfamily 99.9 2.2E-22 7.6E-27 154.7 6.3 74 42-115 5-78 (88)
9 2ctp_A DNAJ homolog subfamily 99.9 4.1E-22 1.4E-26 149.7 5.8 72 42-113 5-76 (78)
10 2dn9_A DNAJ homolog subfamily 99.8 9.1E-22 3.1E-26 148.1 7.0 73 41-113 4-77 (79)
11 2cug_A Mkiaa0962 protein; DNAJ 99.8 8.1E-22 2.8E-26 151.5 6.8 72 41-112 14-85 (88)
12 2ej7_A HCG3 gene; HCG3 protein 99.8 1.3E-21 4.3E-26 148.4 6.4 72 43-114 8-81 (82)
13 2o37_A Protein SIS1; HSP40, J- 99.8 6.9E-22 2.4E-26 153.1 5.0 74 40-115 4-77 (92)
14 2och_A Hypothetical protein DN 99.8 1.2E-21 4E-26 145.3 6.0 70 40-111 4-73 (73)
15 2ctq_A DNAJ homolog subfamily 99.8 1.4E-21 4.8E-26 156.9 6.5 79 36-114 12-91 (112)
16 2dmx_A DNAJ homolog subfamily 99.8 3.5E-21 1.2E-25 149.2 6.6 73 43-115 8-82 (92)
17 2ctw_A DNAJ homolog subfamily 99.8 2.4E-21 8.2E-26 154.8 5.8 79 36-114 9-88 (109)
18 2lgw_A DNAJ homolog subfamily 99.8 3E-21 1E-25 151.4 5.5 72 44-115 2-75 (99)
19 2ctt_A DNAJ homolog subfamily 99.8 1.3E-21 4.5E-26 155.0 1.9 103 164-270 1-103 (104)
20 2yua_A Williams-beuren syndrom 99.8 1.9E-20 6.5E-25 147.0 6.4 68 41-108 14-82 (99)
21 1wjz_A 1700030A21RIK protein; 99.8 3.9E-20 1.3E-24 143.8 5.4 69 42-110 14-89 (94)
22 3apq_A DNAJ homolog subfamily 99.8 9.7E-20 3.3E-24 161.3 7.1 89 44-138 2-91 (210)
23 2ys8_A RAB-related GTP-binding 99.8 9E-20 3.1E-24 140.6 4.4 65 40-104 23-87 (90)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 9.6E-20 3.3E-24 145.5 3.6 71 41-111 12-87 (109)
25 2l6l_A DNAJ homolog subfamily 99.7 2.3E-18 8E-23 146.0 5.9 69 42-110 8-83 (155)
26 1gh6_A Large T antigen; tumor 99.7 5.1E-19 1.7E-23 141.9 -0.4 65 43-110 7-73 (114)
27 1faf_A Large T antigen; J doma 99.7 3.2E-18 1.1E-22 128.6 3.9 66 43-112 10-77 (79)
28 2pf4_E Small T antigen; PP2A, 99.7 6.1E-19 2.1E-23 150.9 -0.8 66 42-110 9-76 (174)
29 1iur_A KIAA0730 protein; DNAJ 99.7 5.3E-18 1.8E-22 129.8 2.8 65 39-103 11-77 (88)
30 3hho_A CO-chaperone protein HS 99.7 3E-17 1E-21 141.6 5.2 66 43-108 3-76 (174)
31 1n4c_A Auxilin; four helix bun 99.6 5.1E-17 1.8E-21 139.9 3.8 62 44-105 117-182 (182)
32 3bvo_A CO-chaperone protein HS 99.6 1.2E-16 4.2E-21 141.2 5.6 66 42-107 41-114 (207)
33 1fpo_A HSC20, chaperone protei 99.6 1E-16 3.5E-21 137.8 4.4 65 45-109 2-74 (171)
34 2qwo_B Putative tyrosine-prote 99.6 8.9E-17 3E-21 123.5 2.9 55 44-98 33-91 (92)
35 3apo_A DNAJ homolog subfamily 99.6 3.1E-17 1.1E-21 171.7 0.4 78 39-116 16-94 (780)
36 2guz_A Mitochondrial import in 99.6 1.6E-16 5.4E-21 116.9 2.8 57 43-102 13-70 (71)
37 3ag7_A Putative uncharacterize 99.6 1.3E-16 4.5E-21 126.2 2.5 58 43-101 40-105 (106)
38 3uo3_A J-type CO-chaperone JAC 99.6 3.7E-16 1.3E-20 135.3 3.1 64 43-108 10-80 (181)
39 1nlt_A Protein YDJ1, mitochond 99.5 1.6E-14 5.3E-19 131.4 6.6 117 192-318 55-247 (248)
40 1exk_A DNAJ protein; extended 99.5 3.4E-14 1.1E-18 106.5 4.7 78 181-262 1-78 (79)
41 3i38_A Putative chaperone DNAJ 99.3 7.5E-13 2.6E-17 105.2 3.6 84 162-320 9-92 (109)
42 1xao_A YDJ1, mitochondrial pro 99.2 3.8E-12 1.3E-16 103.1 4.3 88 162-321 4-95 (121)
43 2q2g_A HSP40 protein, heat sho 99.0 1.7E-10 5.9E-15 99.7 4.8 86 161-318 89-175 (180)
44 3agx_A DNAJ homolog subfamily 99.0 1.8E-10 6.3E-15 99.6 4.7 87 161-319 89-176 (181)
45 2y4t_A DNAJ homolog subfamily 99.0 3.2E-10 1.1E-14 108.5 4.9 65 43-107 381-449 (450)
46 1c3g_A Heat shock protein 40; 99.0 3E-10 1E-14 97.3 4.2 85 161-317 83-168 (170)
47 3lz8_A Putative chaperone DNAJ 98.9 8E-10 2.7E-14 104.2 3.6 86 161-321 228-313 (329)
48 2guz_B Mitochondrial import in 98.8 4.7E-09 1.6E-13 75.0 4.0 53 44-99 4-59 (65)
49 2ctt_A DNAJ homolog subfamily 97.8 6.4E-06 2.2E-10 64.4 2.1 46 191-248 45-95 (104)
50 1exk_A DNAJ protein; extended 97.7 7.3E-06 2.5E-10 60.6 1.5 46 191-248 28-78 (79)
51 3pmq_A Decaheme cytochrome C M 97.4 8.2E-06 2.8E-10 83.0 -3.1 78 168-245 168-257 (669)
52 2bx9_A Anti-trap, AT, tryptoph 97.4 2.1E-05 7E-10 53.6 -0.5 38 191-231 9-47 (53)
53 3lcz_A YCZA, inhibitor of trap 97.3 7.2E-05 2.5E-09 50.9 1.3 28 235-262 10-37 (53)
54 3lcz_A YCZA, inhibitor of trap 97.1 0.00013 4.5E-09 49.6 1.5 13 235-247 24-36 (53)
55 2bx9_A Anti-trap, AT, tryptoph 96.9 0.00029 9.8E-09 47.9 1.5 28 208-247 9-36 (53)
56 2pzi_A Probable serine/threoni 90.3 0.14 4.8E-06 52.2 3.2 51 38-95 623-675 (681)
57 2qkd_A Zinc finger protein ZPR 52.2 16 0.00055 34.7 5.0 39 207-245 11-52 (404)
58 1uzc_A Hypothetical protein FL 49.0 30 0.001 24.3 4.9 53 55-109 11-66 (71)
59 2qkd_A Zinc finger protein ZPR 43.1 25 0.00085 33.4 4.8 19 266-284 302-320 (404)
60 1ltl_A DNA replication initiat 40.2 82 0.0028 27.9 7.7 11 234-244 156-166 (279)
61 3nyb_B Protein AIR2; polya RNA 39.5 17 0.0006 26.3 2.5 54 190-247 4-59 (83)
62 2b7e_A PRE-mRNA processing pro 37.4 36 0.0012 23.1 3.5 49 59-109 3-56 (59)
63 1ltl_A DNA replication initiat 36.8 35 0.0012 30.4 4.6 69 235-304 135-223 (279)
64 2cqn_A Formin-binding protein 34.6 58 0.002 23.1 4.6 52 57-109 7-62 (77)
65 3u5e_X 60S ribosomal protein L 25.5 68 0.0023 25.7 3.9 17 37-53 50-66 (142)
66 2d7l_A WD repeat and HMG-box D 25.0 84 0.0029 22.3 4.1 45 62-109 17-61 (81)
67 4a3n_A Transcription factor SO 24.4 90 0.0031 20.9 4.1 42 62-107 14-55 (71)
68 1i11_A Transcription factor SO 23.6 1.2E+02 0.0042 21.0 4.8 41 63-107 17-57 (81)
69 1ckt_A High mobility group 1 p 23.6 1.4E+02 0.0049 19.9 5.0 41 65-107 16-56 (71)
70 1cf7_A Protein (transcription 23.4 70 0.0024 22.6 3.3 45 54-108 8-52 (76)
71 1qyp_A RNA polymerase II; tran 21.6 79 0.0027 20.7 3.1 11 210-220 17-27 (57)
72 2crj_A SWI/SNF-related matrix- 21.5 1.4E+02 0.0049 21.3 4.9 41 63-107 20-60 (92)
73 1tfi_A Transcriptional elongat 20.4 1.1E+02 0.0038 19.6 3.6 16 209-224 10-25 (50)
74 1hme_A High mobility group pro 20.2 1.7E+02 0.0059 19.9 4.9 41 63-107 19-59 (77)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=2.4e-49 Score=374.65 Aligned_cols=225 Identities=29% Similarity=0.474 Sum_probs=100.5
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCC-
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL- 120 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~- 120 (339)
...|||++|||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||+|+..+...++.++
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~ 105 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQR 105 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccccc
Confidence 3479999999999999999999999999999999998888999999999999999999999999998544221111110
Q ss_pred ---CCCCCCCChhhhhccccCCCCCCCCCCCCCCCccccCCCCCCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCC
Q 019562 121 ---SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSC 197 (339)
Q Consensus 121 ---~~~~~~~~~~~~f~~fFg~~~~~fg~~g~~~~~~~~~~~~~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C 197 (339)
++++.+.+..++|++|||+. ++ + ++ .....++.|+.++|.|||+|+|+|+++++.+++.+.|
T Consensus 106 ~~~~~~f~~~~f~diF~~~Fg~~----g~-~--~~-----~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~--- 170 (329)
T 3lz8_A 106 QTHEQSYSQQDFDDIFSSMFGQQ----AH-Q--RR-----RQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--- 170 (329)
T ss_dssp -------------------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC---
T ss_pred ccccCCcCCCchhhhhHhhhcCc----CC-C--CC-----CCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec---
Confidence 11111223457788887642 10 0 00 1124578999999999999999999999999876532
Q ss_pred CCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEEeeceEEEEEeCCCCCCC
Q 019562 198 GGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNG 277 (339)
Q Consensus 198 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G 277 (339)
|.|.+ .+...+.++|+||||+++|
T Consensus 171 ------------------g~G~v--------------------------------------~~~~~~~l~V~IP~Gv~~G 194 (329)
T 3lz8_A 171 ------------------VFGMI--------------------------------------ESETPKTLNVKIPAGVVDG 194 (329)
T ss_dssp ------------------SCC-C--------------------------------------CEEEEEEEEEEECTTCCTT
T ss_pred ------------------CCeEE--------------------------------------EEecceEEEEeCCCCCCCC
Confidence 11211 1222467999999999999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccChhhhhcCCeEEee
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~l~eAllG~~~~V~ 337 (339)
++|+|+|+|++..+++.+|||||+|+|++|+.|+|+|+||+++++|+|+|||||++++|+
T Consensus 195 ~~Irl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~Vp 254 (329)
T 3lz8_A 195 QRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVP 254 (329)
T ss_dssp CEEEESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEEC
T ss_pred CEEEEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEE
Confidence 999999999997777889999999999999999999999999999999999999999997
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=2.4e-41 Score=308.72 Aligned_cols=174 Identities=25% Similarity=0.527 Sum_probs=162.7
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcce-eeeecCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSK 239 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~ 239 (339)
..++.|++++|.|||||||+|+++++.+++.+.|+.|+|+|..... ..+|+.|+|+|.++..+++++ ++ +...+|+.
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~ 85 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDV 85 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTT
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCC
Confidence 3578999999999999999999999999999999999999999887 499999999999888887776 44 34579999
Q ss_pred CCCccEEE--eecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccce
Q 019562 240 CGGDGKII--IDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNL 317 (339)
Q Consensus 240 C~G~G~~~--~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL 317 (339)
|+|+|+++ .++|+.|.|.+++.+.+.++|.||||+++|++|+|+|+|++.. ++.+|||||+|++++|+.|+|+|+||
T Consensus 86 C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~-~g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 86 CHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp CSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred CCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCC-CCCcceEEEEEEEecCccceeeCCEE
Confidence 99999999 8999999999999999999999999999999999999999864 56899999999999999999999999
Q ss_pred eEecccChhhhhcCCeEEee
Q 019562 318 FSKISVDYTEAILGTSMEVG 337 (339)
Q Consensus 318 ~~~~~I~l~eAllG~~~~V~ 337 (339)
|++++|+|+|||||++++|+
T Consensus 165 ~~~~~Isl~eAllG~~i~v~ 184 (248)
T 1nlt_A 165 VYEAEIDLLTAIAGGEFALE 184 (248)
T ss_dssp EEEEEEEHHHHHHCBCCEEE
T ss_pred EEEEEeCHHHHhcCCEEEEe
Confidence 99999999999999999997
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.94 E-value=1.3e-26 Score=201.62 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=96.5
Q ss_pred CcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019562 164 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (339)
Q Consensus 164 g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 243 (339)
+.|++++|.|||||||+|+++++.+.+. |.
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~-------------------c~------------------------------- 31 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHK-------------------RL------------------------------- 31 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEE-------------------EE-------------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecc-------------------cC-------------------------------
Confidence 3688999999999999999999977531 22
Q ss_pred cEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEeccc
Q 019562 244 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 323 (339)
Q Consensus 244 G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I 323 (339)
.|.|.+++.+.+.++|.||||+++|++|+|+|+|++.. ++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 32 ---------~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (181)
T 3agx_A 32 ---------NPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARI 101 (181)
T ss_dssp ---------CTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred ---------CCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCCcEEEEEEc
Confidence 23333344457889999999999999999999999875 57899999999999999999999999999999
Q ss_pred ChhhhhcCCeEEee
Q 019562 324 DYTEAILGTSMEVG 337 (339)
Q Consensus 324 ~l~eAllG~~~~V~ 337 (339)
+|+|||||++++|+
T Consensus 102 sl~eAllG~~i~v~ 115 (181)
T 3agx_A 102 SLREALCGCTVNVP 115 (181)
T ss_dssp EHHHHHHCEEEEEE
T ss_pred CHHHHhCCCEEEeE
Confidence 99999999999997
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.92 E-value=2.5e-25 Score=193.47 Aligned_cols=113 Identities=21% Similarity=0.349 Sum_probs=102.6
Q ss_pred CcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019562 164 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (339)
Q Consensus 164 g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 243 (339)
+.|++++|.|||+|||+|+++++.+.+.+.|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 679999999999999999999999998877741
Q ss_pred cEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEeccc
Q 019562 244 GKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISV 323 (339)
Q Consensus 244 G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I 323 (339)
+.+.+.+.++|.||||+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|
T Consensus 36 --------------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~I 101 (180)
T 2q2g_A 36 --------------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTI 101 (180)
T ss_dssp --------------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEE
T ss_pred --------------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEc
Confidence 233446789999999999999999999999866678899999999999999999999999999999
Q ss_pred ChhhhhcCCeEEee
Q 019562 324 DYTEAILGTSMEVG 337 (339)
Q Consensus 324 ~l~eAllG~~~~V~ 337 (339)
+|+|||||++++|+
T Consensus 102 sl~eAllG~~i~v~ 115 (180)
T 2q2g_A 102 PLVRALTGFTCPVT 115 (180)
T ss_dssp EHHHHHHCEEEEEE
T ss_pred CHHHHhCCCEEEee
Confidence 99999999999987
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=99.90 E-value=9.4e-24 Score=181.85 Aligned_cols=109 Identities=17% Similarity=0.404 Sum_probs=97.6
Q ss_pred cceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCcc
Q 019562 165 LDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDG 244 (339)
Q Consensus 165 ~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G 244 (339)
.|++++|.|||+|||+|+++++.+.+.. + .|
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~----~-------------------~G-------------------------- 31 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG----P-------------------HG-------------------------- 31 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE----T-------------------TT--------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec----C-------------------CC--------------------------
Confidence 3789999999999999999999987641 0 11
Q ss_pred EEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEecccC
Q 019562 245 KIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVD 324 (339)
Q Consensus 245 ~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~~~I~ 324 (339)
.+ +.+.++|.||||+++|++|+|+|+|++..+++.+|||||+|++++|+.|+|+|+||+++++|+
T Consensus 32 --------------~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Is 96 (170)
T 1c3g_A 32 --------------AS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLS 96 (170)
T ss_dssp --------------EE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCB
T ss_pred --------------cE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcC
Confidence 12 357899999999999999999999998777889999999999999999999999999999999
Q ss_pred hhhhhcCCeEEee
Q 019562 325 YTEAILGTSMEVG 337 (339)
Q Consensus 325 l~eAllG~~~~V~ 337 (339)
|+|||||++++|+
T Consensus 97 l~eAllG~~~~v~ 109 (170)
T 1c3g_A 97 FKESLLGFSKTIQ 109 (170)
T ss_dssp HHHHHHCEEEEEE
T ss_pred HHHHhCCCeEEee
Confidence 9999999999987
No 6
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.90 E-value=1.8e-24 Score=171.27 Aligned_cols=97 Identities=42% Similarity=0.710 Sum_probs=69.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~ 121 (339)
..|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||++|++++..+..+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 579999999999999999999999999999999997 4778999999999999999999999999999988764321111
Q ss_pred CCCCCCChhhhhccccCC
Q 019562 122 NTSQGVDPFELYSAFFGG 139 (339)
Q Consensus 122 ~~~~~~~~~~~f~~fFg~ 139 (339)
+...++++.++|+.||++
T Consensus 82 ~~~~~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFGD 99 (103)
T ss_dssp ------------------
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 111123445667777764
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=5.8e-23 Score=153.96 Aligned_cols=73 Identities=59% Similarity=1.041 Sum_probs=69.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
..|||+||||+++|+.++||+|||+|+++||||+++++.+.+.|+.|++||++|+||.+|+.||++|++++..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 5799999999999999999999999999999999988889999999999999999999999999999987753
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.2e-22 Score=154.68 Aligned_cols=74 Identities=49% Similarity=0.818 Sum_probs=69.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
...|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 78 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTS 78 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccc
Confidence 45799999999999999999999999999999999988889999999999999999999999999999877653
No 9
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-22 Score=149.70 Aligned_cols=72 Identities=49% Similarity=0.846 Sum_probs=68.1
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~ 113 (339)
...|||+||||+++|+.++||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|.++.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 457999999999999999999999999999999999888899999999999999999999999999998653
No 10
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.1e-22 Score=148.14 Aligned_cols=73 Identities=51% Similarity=0.857 Sum_probs=67.6
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCc
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~ 113 (339)
....|||+||||+++|+.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 34579999999999999999999999999999999987 57889999999999999999999999999997653
No 11
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=8.1e-22 Score=151.50 Aligned_cols=72 Identities=50% Similarity=0.861 Sum_probs=68.1
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccC
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 112 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g 112 (339)
....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.+|+.+
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 346799999999999999999999999999999999988889999999999999999999999999999764
No 12
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=148.42 Aligned_cols=72 Identities=49% Similarity=0.826 Sum_probs=66.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.+|++++.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 81 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS 81 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccccC
Confidence 47999999999999999999999999999999998753 5788999999999999999999999999987653
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.9e-22 Score=153.15 Aligned_cols=74 Identities=46% Similarity=0.728 Sum_probs=67.5
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
|.+..|||+||||+++|+.+|||+|||+|+++||||+++ ...++|++|++||++|+||.+|+.||++|++++..
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 446789999999999999999999999999999999985 34679999999999999999999999999887653
No 14
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=1.2e-21 Score=145.30 Aligned_cols=70 Identities=50% Similarity=0.823 Sum_probs=62.5
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhccccc
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~ 111 (339)
|....|||++|||+++|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999853 478999999999999999999999999863
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=156.89 Aligned_cols=79 Identities=25% Similarity=0.502 Sum_probs=71.7
Q ss_pred cccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 36 RGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 36 ~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
....+....|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|.+++.
T Consensus 12 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 12 LNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred HhccccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 3344456789999999999999999999999999999999997 678999999999999999999999999999987654
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=149.23 Aligned_cols=73 Identities=49% Similarity=0.760 Sum_probs=67.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||++|+||.+|+.||++|.+++..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 36999999999999999999999999999999998743 67899999999999999999999999999887653
No 17
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2.4e-21 Score=154.76 Aligned_cols=79 Identities=46% Similarity=0.799 Sum_probs=71.3
Q ss_pred cccccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcC
Q 019562 36 RGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (339)
Q Consensus 36 ~~~~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~ 114 (339)
.+...+...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..++.
T Consensus 9 ~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 9 QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp CCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 3344556789999999999999999999999999999999997 467899999999999999999999999999987654
No 18
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.83 E-value=3e-21 Score=151.44 Aligned_cols=72 Identities=50% Similarity=0.886 Sum_probs=64.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHhhccCchhhhhhhcccccCcCC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~ 115 (339)
.|||+||||+++|+.+|||+|||+|+++||||+++.. .+.++|++|++||++|+||.+|+.||.+|.+++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 5899999999999999999999999999999998753 47899999999999999999999999999887653
No 19
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-21 Score=155.04 Aligned_cols=103 Identities=30% Similarity=0.623 Sum_probs=92.2
Q ss_pred CcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCc
Q 019562 164 GLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGD 243 (339)
Q Consensus 164 g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~ 243 (339)
|.|+.++|.|||+|||+|.+++|.+++.+.|+.|+|+|........+|+.|+|+|.+...+ |+|++..+|+.|.|+
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~ 76 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGR 76 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSS
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCc
Confidence 3577889999999999999999999999999999999999888889999999999876553 556667899999999
Q ss_pred cEEEeecccccCCceEEeeceEEEEEe
Q 019562 244 GKIIIDHCRRCGGNGEVQSKRSMKVVI 270 (339)
Q Consensus 244 G~~~~~~C~~C~g~g~~~~~~~l~v~I 270 (339)
|+++.++|+.|.|.+++.+.+.|+|+|
T Consensus 77 G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 77 GSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred ceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 999999999999999998888777654
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=147.01 Aligned_cols=68 Identities=41% Similarity=0.547 Sum_probs=63.6
Q ss_pred ccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
+...|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 34579999999999999999999999999999999996 577899999999999999999999999984
No 21
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.79 E-value=3.9e-20 Score=143.79 Aligned_cols=69 Identities=32% Similarity=0.580 Sum_probs=63.6
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHHHhhccCchhhhhhhcccc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~-------~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~ 110 (339)
...|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||.+..
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 45899999999999999999999999999999999863 4578999999999999999999999998654
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.79 E-value=9.7e-20 Score=161.33 Aligned_cols=89 Identities=38% Similarity=0.712 Sum_probs=75.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCcccCCCC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~~~~~~~ 122 (339)
.|||++|||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|++++....
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~----- 76 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ----- 76 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccc-----
Confidence 58999999999999999999999999999999996 678999999999999999999999999999998875432
Q ss_pred CCCCCChhhhhccccC
Q 019562 123 TSQGVDPFELYSAFFG 138 (339)
Q Consensus 123 ~~~~~~~~~~f~~fFg 138 (339)
......+.+|...|+
T Consensus 77 -~~~~~~~~~~~~~fg 91 (210)
T 3apq_A 77 -GGQYESWSYYRYDFG 91 (210)
T ss_dssp -SCCCCCHHHHHHSSS
T ss_pred -ccccccccccccccc
Confidence 122344555665554
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9e-20 Score=140.59 Aligned_cols=65 Identities=32% Similarity=0.495 Sum_probs=60.9
Q ss_pred cccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhh
Q 019562 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104 (339)
Q Consensus 40 ~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~ 104 (339)
+....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+|+.+|+.
T Consensus 23 ~~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HHTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred HhcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 34568999999999999999999999999999999999988999999999999999999999864
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.77 E-value=9.6e-20 Score=145.48 Aligned_cols=71 Identities=39% Similarity=0.614 Sum_probs=65.6
Q ss_pred ccccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHHHhhccCchhhhhhhccccc
Q 019562 41 AAGTDYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (339)
Q Consensus 41 ~~~~d~y~iLgv~~~a-~~~eIk~ayr~la~~~hPd~~~~----~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~ 111 (339)
....|||++|||+++| +.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 3468999999999999 99999999999999999999875 56889999999999999999999999998864
No 25
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-18 Score=145.96 Aligned_cols=69 Identities=32% Similarity=0.562 Sum_probs=63.0
Q ss_pred cccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-------hHHHHHHHHHHHhhccCchhhhhhhcccc
Q 019562 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG-------AEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~-------~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~ 110 (339)
...|||+||||+++|+.++||+|||+|++++|||+++... +.++|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 4579999999999999999999999999999999987542 57999999999999999999999998653
No 26
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.71 E-value=5.1e-19 Score=141.87 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=60.8
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccc
Q 019562 43 GTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~--~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~ 110 (339)
..|||+||||+++|+. ++||+|||+||+++|||++++ .++|++|++||+||+||.+|+.||.+|.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 4689999999999999 999999999999999999865 5799999999999999999999999875
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.71 E-value=3.2e-18 Score=128.55 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=59.7
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccccC
Q 019562 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 112 (339)
Q Consensus 43 ~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g 112 (339)
..++|++|||+++ ++.++||+|||+||+++|||++. +.++|++|++||++|+|+.+|.. +.||+++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 4689999999999 99999999999999999999974 46899999999999999999988 5677654
No 28
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.70 E-value=6.1e-19 Score=150.92 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=58.8
Q ss_pred cccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcccc
Q 019562 42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (339)
Q Consensus 42 ~~~d~y~iLgv~~~a~--~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~ 110 (339)
...|||++|||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 4579999999999998 6999999999999999999865 3799999999999999999999999995
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.69 E-value=5.3e-18 Score=129.75 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=58.1
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHHHhhccCchhhh
Q 019562 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRS 103 (339)
Q Consensus 39 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~--~~~~~~f~~i~~Ay~vL~d~~~r~ 103 (339)
..+...++|+||||+++|+.+|||+|||+||++||||+++. +.+.++|++|++||++|+|...|.
T Consensus 11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455799999999999999999999999999999999975 347899999999999999988773
No 30
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.67 E-value=3e-17 Score=141.55 Aligned_cols=66 Identities=21% Similarity=0.404 Sum_probs=60.3
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 43 GTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~--~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
..|||++|||+++++ .++||+|||+|+++||||++++.. +.++|+.|++||++|+||.+|+.||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 579999999999988 999999999999999999987543 668999999999999999999999973
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.64 E-value=5.1e-17 Score=139.85 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=58.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccCchhhhhh
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY 105 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~y 105 (339)
.|||++|||++.|+.++||+|||+|+++||||+++... ++++|++|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 58999999999999999999999999999999987543 789999999999999999999987
No 32
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=141.17 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=59.6
Q ss_pred cccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 42 ~~~d~y~iLgv~~~--a~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
...|||++|||+++ ++.++||+|||+|+++||||++++.. +.++|++|++||+||+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 46799999999986 79999999999999999999987432 56789999999999999999999995
No 33
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.63 E-value=1e-16 Score=137.76 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=59.8
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------hHHHHHHHHHHHhhccCchhhhhhhccc
Q 019562 45 DYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (339)
Q Consensus 45 d~y~iLgv~~~a--~~~eIk~ayr~la~~~hPd~~~~~~------~~~~f~~i~~Ay~vL~d~~~r~~yd~~G 109 (339)
|||++|||++++ +.++||+|||+|+++||||++++.. +.++|+.|++||++|+||.+|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 899999999999 9999999999999999999987532 4579999999999999999999999853
No 34
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=8.9e-17 Score=123.47 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=50.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccC
Q 019562 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSD 98 (339)
Q Consensus 44 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d 98 (339)
.++|++|||++.||.+|||+|||+||++||||++++.. ++++|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999987432 78899999999999975
No 35
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.62 E-value=3.1e-17 Score=171.73 Aligned_cols=78 Identities=40% Similarity=0.718 Sum_probs=40.9
Q ss_pred ccccccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHHHhhccCchhhhhhhcccccCcCCc
Q 019562 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 116 (339)
Q Consensus 39 ~~~~~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~-~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G~~g~~~~ 116 (339)
......|||++|||+++||.+|||+|||+||++||||+++ ++.+.++|++|++||++|+||.+|+.||++|++++...
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 3445689999999999999999999999999999999996 67789999999999999999999999999999887643
No 36
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-16 Score=116.86 Aligned_cols=57 Identities=23% Similarity=0.289 Sum_probs=52.0
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhh
Q 019562 43 GTDYYSTLNVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKR 102 (339)
Q Consensus 43 ~~d~y~iLgv~~-~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r 102 (339)
..++|+||||++ +|+.+|||+|||+|+++||||++ ++.++|++|++||++|+++..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhc
Confidence 468999999999 79999999999999999999996 4567999999999999998765
No 37
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.61 E-value=1.3e-16 Score=126.25 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=51.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------chHHHHHHHHHHHhhccCchh
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--------GAEEKFKEISSAYEVLSDDEK 101 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~--------~~~~~f~~i~~Ay~vL~d~~~ 101 (339)
..|||++|+++. ||.+|||+|||+||++||||+++++ .++++|++|++||++|+|+..
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 479999999996 9999999999999999999998632 358999999999999999863
No 38
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.58 E-value=3.7e-16 Score=135.29 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=58.7
Q ss_pred ccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 43 GTDYYSTL------NVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 43 ~~d~y~iL------gv~~-~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
..|||++| |+++ +|+.++||+|||+|+++||||++++ +.++|+.|++||++|+||.+|+.||..
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 47999999 4665 8999999999999999999999865 778999999999999999999999984
No 39
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.50 E-value=1.6e-14 Score=131.43 Aligned_cols=117 Identities=23% Similarity=0.472 Sum_probs=80.0
Q ss_pred eeCCCCCCCCccC---------CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEee-------------
Q 019562 192 ETCDSCGGTGAKS---------SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID------------- 249 (339)
Q Consensus 192 ~~C~~C~G~G~~~---------~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~------------- 249 (339)
..|+.|+|+|... ...+.+|+.|+|+|+++.. ..+|+.|+|.|.+...
T Consensus 55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~----------~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~ 124 (248)
T 1nlt_A 55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP----------KDRCKSCNGKKVENERKILEVHVEPGMKD 124 (248)
T ss_dssp CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT----------TSBCSSSTTSCEEEEEEEEEEEECTTCCT
T ss_pred ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc----------CCCCcccCCCceEeeeEEEEEEECCCccC
Confidence 6899999999742 1246789999999987521 1789999999976530
Q ss_pred ------------------------------------------------cccccCCceEEee--ceEEEEEeCCC--CCCC
Q 019562 250 ------------------------------------------------HCRRCGGNGEVQS--KRSMKVVIPPG--VSNG 277 (339)
Q Consensus 250 ------------------------------------------------~C~~C~g~g~~~~--~~~l~v~Ip~G--~~~G 277 (339)
.=..+++...+.. ...++|.|||| +++|
T Consensus 125 G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g 204 (248)
T 1nlt_A 125 GQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPG 204 (248)
T ss_dssp TCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTT
T ss_pred CCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCC
Confidence 0112344444432 23689999999 9999
Q ss_pred CEEEEccCCCCCCCCCCCcCEEEEEEEecCCC--cccccccee
Q 019562 278 ATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNLF 318 (339)
Q Consensus 278 ~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~--f~R~g~dL~ 318 (339)
++++|+|+|++...+..+|||||+|+|+.|.. +..++.+|+
T Consensus 205 ~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~~l 247 (248)
T 1nlt_A 205 MRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKKL 247 (248)
T ss_dssp CEEEETTCSCBCSSSCSBCCEEEEEEEECCC------------
T ss_pred eEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHHhh
Confidence 99999999999654446799999999999988 877776654
No 40
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=99.46 E-value=3.4e-14 Score=106.50 Aligned_cols=78 Identities=38% Similarity=0.856 Sum_probs=67.7
Q ss_pred ccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEeecccccCCceEE
Q 019562 181 GGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV 260 (339)
Q Consensus 181 G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~g~g~~ 260 (339)
|.+++|.+++.+.|+.|+|+|........+|+.|+|+|+++..+ |+++...+|+.|+|+|+++.++|+.|.|.+++
T Consensus 1 G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CcEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEE
Confidence 45677888999999999999998777778999999999987644 66666689999999999999999999999987
Q ss_pred ee
Q 019562 261 QS 262 (339)
Q Consensus 261 ~~ 262 (339)
.+
T Consensus 77 ~~ 78 (79)
T 1exk_A 77 ER 78 (79)
T ss_dssp EC
T ss_pred ee
Confidence 53
No 41
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=7.5e-13 Score=105.21 Aligned_cols=84 Identities=23% Similarity=0.427 Sum_probs=71.1
Q ss_pred CCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCC
Q 019562 162 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (339)
Q Consensus 162 ~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 241 (339)
+.|.|+.+++.|||.||+.|+++.|...
T Consensus 9 R~G~DL~~~~~Isl~eAl~G~~i~v~tl---------------------------------------------------- 36 (109)
T 3i38_A 9 IVGHNLEIVLPLAPWEAALGAKVTVPTL---------------------------------------------------- 36 (109)
T ss_dssp EETTEEEEEEEECHHHHHHCEEEEECCS----------------------------------------------------
T ss_pred EECCEEEEEEEcCHHHHhCCCEEEEEcC----------------------------------------------------
Confidence 4688999999999999999998776431
Q ss_pred CccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 242 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 242 G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
...++|.||+|+++|++++++|+|++. .+ .+|||||+|+|..|..+..++.+++.+
T Consensus 37 ---------------------dG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~~ 92 (109)
T 3i38_A 37 ---------------------KESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQQ 92 (109)
T ss_dssp ---------------------SSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ---------------------CCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHHH
Confidence 113679999999999999999999997 33 789999999999999988887776654
No 42
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.8e-12 Score=103.07 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=69.4
Q ss_pred CCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCC
Q 019562 162 NFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCG 241 (339)
Q Consensus 162 ~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 241 (339)
++|.|+.+++.|+|.+|+.|+++.|...
T Consensus 4 R~G~DL~~~~~Isl~eAllG~~i~v~tl---------------------------------------------------- 31 (121)
T 1xao_A 4 RDGDDLVYEAEIDLLTAIAGGEFALEHV---------------------------------------------------- 31 (121)
T ss_dssp EETTEEEEEEEEEHHHHHHCEEEEEECT----------------------------------------------------
T ss_pred EECCeEEEEEEcCHHHHhCCCEEEEecC----------------------------------------------------
Confidence 4578999999999999999998776421
Q ss_pred CccEEEeecccccCCceEEeeceEEEEEeCCC--CCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCC--ccccccce
Q 019562 242 GDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG--IHRDGLNL 317 (339)
Q Consensus 242 G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G--~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~--f~R~g~dL 317 (339)
..+.++|+||+| +++|++++++|+|++..++..+|||||+|+|+.|.. +..++.++
T Consensus 32 --------------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 32 --------------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp --------------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHH
T ss_pred --------------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHH
Confidence 023578999999 999999999999999654446899999999999988 88777776
Q ss_pred eEec
Q 019562 318 FSKI 321 (339)
Q Consensus 318 ~~~~ 321 (339)
+.++
T Consensus 92 l~~l 95 (121)
T 1xao_A 92 LEEI 95 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 43
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=99.02 E-value=1.7e-10 Score=99.73 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=70.7
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 240 (339)
.+.|.|+.+++.|||.||+.|+++.|...
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl--------------------------------------------------- 117 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVTTL--------------------------------------------------- 117 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT---------------------------------------------------
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEeeCC---------------------------------------------------
Confidence 35689999999999999999998776432
Q ss_pred CCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCC-CCCcCEEEEEEEecCCCcccccccee
Q 019562 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNLF 318 (339)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~f~R~g~dL~ 318 (339)
....++|.||+|+++|++++++|+|++..++ +.+|||||+|+|..|..+..++.+++
T Consensus 118 ---------------------dG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 175 (180)
T 2q2g_A 118 ---------------------DNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLI 175 (180)
T ss_dssp ---------------------TCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHH
T ss_pred ---------------------CCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence 0125778999999999999999999996533 46799999999999998887776654
No 44
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=99.01 E-value=1.8e-10 Score=99.63 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=71.3
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 240 (339)
.+.|.|+.+++.|||.||+.|+++.|...
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl--------------------------------------------------- 117 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVPTL--------------------------------------------------- 117 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT---------------------------------------------------
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeECC---------------------------------------------------
Confidence 35689999999999999999998776432
Q ss_pred CCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCC-CCCCcCEEEEEEEecCCCccccccceeE
Q 019562 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRR-RSLAGDLFVALHVDEKQGIHRDGLNLFS 319 (339)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~-~~~~GDLiv~i~v~~~~~f~R~g~dL~~ 319 (339)
....++|.||+|+++|++++++|+|++..+ .+.+|||||+|+|..|..+..++.+++.
T Consensus 118 ---------------------dG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~ 176 (181)
T 3agx_A 118 ---------------------DGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLE 176 (181)
T ss_dssp ---------------------TSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHH
T ss_pred ---------------------CCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 012577899999999999999999999654 3467999999999999988877766543
No 45
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=3.2e-10 Score=108.54 Aligned_cols=65 Identities=49% Similarity=0.716 Sum_probs=56.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 43 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~hPd~~~~~~----~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
..++|.+||+.+.++.++|+++|+++++++|||+.+.+. ++++|++|++||++|+|+++|+.||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 358999999999999999999999999999999987543 88999999999999999999999996
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.96 E-value=3e-10 Score=97.27 Aligned_cols=85 Identities=26% Similarity=0.320 Sum_probs=69.8
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 240 (339)
.+.|.|+.+++.|+|.||+.|+++.|...
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~tl--------------------------------------------------- 111 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQTI--------------------------------------------------- 111 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEECS---------------------------------------------------
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEeeCC---------------------------------------------------
Confidence 34689999999999999999998876432
Q ss_pred CCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCC-CCCcCEEEEEEEecCCCccccccce
Q 019562 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRR-SLAGDLFVALHVDEKQGIHRDGLNL 317 (339)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~-~~~GDLiv~i~v~~~~~f~R~g~dL 317 (339)
....++|.||+|+++|++++++|+|++..++ +.+|||||+|+|..|..+..++..+
T Consensus 112 ---------------------dG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~ 168 (170)
T 1c3g_A 112 ---------------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA 168 (170)
T ss_dssp ---------------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred ---------------------CCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHh
Confidence 0124678999999999999999999996533 3579999999999999887776554
No 47
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.87 E-value=8e-10 Score=104.18 Aligned_cols=86 Identities=22% Similarity=0.435 Sum_probs=71.7
Q ss_pred CCCCcceEEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCCCcccCCCCCCccEEEEeeecCCcceeeeecCCCC
Q 019562 161 GNFGLDIRYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKC 240 (339)
Q Consensus 161 ~~~g~di~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 240 (339)
.+.|.||.+++.|+|.||+.|+++.|...
T Consensus 228 ~R~G~DL~~~~~Isl~eAllG~~v~VptL--------------------------------------------------- 256 (329)
T 3lz8_A 228 DIVGHNLEIVLPLAPWEAALGAKVTVPTL--------------------------------------------------- 256 (329)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS---------------------------------------------------
T ss_pred EEcCCcEEEEEECCHHHHcCCCeEEEECC---------------------------------------------------
Confidence 35689999999999999999998776432
Q ss_pred CCccEEEeecccccCCceEEeeceEEEEEeCCCCCCCCEEEEccCCCCCCCCCCCcCEEEEEEEecCCCccccccceeEe
Q 019562 241 GGDGKIIIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSK 320 (339)
Q Consensus 241 ~G~G~~~~~~C~~C~g~g~~~~~~~l~v~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~R~g~dL~~~ 320 (339)
...++|+||+|+++|++++|+|+|++.. ..+|||||+|+|..|..+..++..|+.+
T Consensus 257 ----------------------dG~v~l~ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~ 312 (329)
T 3lz8_A 257 ----------------------KESILLTVPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKARELWQQ 312 (329)
T ss_dssp ----------------------SSCEEEEECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 1125799999999999999999999964 4689999999999999988877776655
Q ss_pred c
Q 019562 321 I 321 (339)
Q Consensus 321 ~ 321 (339)
+
T Consensus 313 ~ 313 (329)
T 3lz8_A 313 L 313 (329)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.76 E-value=4.7e-09 Score=75.01 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=47.0
Q ss_pred cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCc
Q 019562 44 TDYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDD 99 (339)
Q Consensus 44 ~d~y~iLgv~~~---a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~ 99 (339)
.+-|.||||+++ ++.++|+++||+|....|||+. ++.....+|++|++.|...
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHH
Confidence 356889999999 9999999999999999999985 6677888999999998643
No 49
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=6.4e-06 Score=64.39 Aligned_cols=46 Identities=33% Similarity=0.826 Sum_probs=37.4
Q ss_pred eeeCCCCCCCCccC-----CCCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 019562 191 FETCDSCGGTGAKS-----SNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (339)
Q Consensus 191 ~~~C~~C~G~G~~~-----~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 248 (339)
...|+.|+|+|... .....+|+.|+|+|+++. .+|+.|+|.|++..
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~------------~~C~~C~G~G~v~~ 95 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIII------------SPCVVCRGAGQAKQ 95 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECS------------SCCSSSSSCSEECC
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECC------------CcCCCCCCeeEEEE
Confidence 46799999999752 124579999999998764 78999999998864
No 50
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.74 E-value=7.3e-06 Score=60.60 Aligned_cols=46 Identities=37% Similarity=0.873 Sum_probs=36.6
Q ss_pred eeeCCCCCCCCccCC-----CCcccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEEe
Q 019562 191 FETCDSCGGTGAKSS-----NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII 248 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~ 248 (339)
...|+.|+|+|.... ....+|+.|+|+|+++. .+|+.|+|.|++.+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~------------~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK------------DPCNKCHGHGRVER 78 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS------------SBCGGGTTSSEEEC
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECC------------CcCCCCCCeEEEee
Confidence 468999999997532 12468999999998753 68999999998753
No 51
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=97.41 E-value=8.2e-06 Score=82.96 Aligned_cols=78 Identities=18% Similarity=0.326 Sum_probs=58.2
Q ss_pred EEEEeeceeeeecccEEEEEEeeeeeCCCCCCCCccCCC---CcccCCCCCCccEEEEe--------eecCCcce-eeee
Q 019562 168 RYDLHLSFEESIFGGQRGIEVSCFETCDSCGGTGAKSSN---CIQSCKACWGRGGVLKT--------QRTPFGLI-SQVS 235 (339)
Q Consensus 168 ~~~l~lslee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~--------~~~~~g~~-~~~~ 235 (339)
.+++.|+|+|+++|.++++.+.+.+.|..|+|+|...+. ...+|+.|+|+...... +..-.|.+ +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 357888999999999999999999999999999998876 57899999999421110 00111222 2236
Q ss_pred cCCCCCCccE
Q 019562 236 TCSKCGGDGK 245 (339)
Q Consensus 236 ~C~~C~G~G~ 245 (339)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 7999998764
No 52
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.38 E-value=2.1e-05 Score=53.60 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=25.5
Q ss_pred eeeCCCCCCCCccCCCCcccCCCCCCccEEEEee-ecCCcce
Q 019562 191 FETCDSCGGTGAKSSNCIQSCKACWGRGGVLKTQ-RTPFGLI 231 (339)
Q Consensus 191 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-~~~~g~~ 231 (339)
...|+.|+|+|... ..+|+.|+|+|+++..+ +..++++
T Consensus 9 ~~~C~~C~GsG~~~---~~~C~~C~G~G~v~~~qG~~~~g~~ 47 (53)
T 2bx9_A 9 EVACPKCERAGEIE---GTPCPACSGKGVILTAQGYTLLDFI 47 (53)
T ss_dssp EEECTTTTTSSEET---TEECTTTTTSSEEECHHHHHHHHHH
T ss_pred cccCCCCcceeccC---CCCCccCCCCccEEEEecccHHHHH
Confidence 35788888888764 36788888888776655 4444443
No 53
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.27 E-value=7.2e-05 Score=50.87 Aligned_cols=28 Identities=32% Similarity=0.882 Sum_probs=20.0
Q ss_pred ecCCCCCCccEEEeecccccCCceEEee
Q 019562 235 STCSKCGGDGKIIIDHCRRCGGNGEVQS 262 (339)
Q Consensus 235 ~~C~~C~G~G~~~~~~C~~C~g~g~~~~ 262 (339)
.+|+.|+|+|.++.++|+.|.|.|.+..
T Consensus 10 ~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 10 TTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp EECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred ccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 5677777777777777777777776554
No 54
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.13 E-value=0.00013 Score=49.55 Aligned_cols=13 Identities=46% Similarity=1.058 Sum_probs=7.3
Q ss_pred ecCCCCCCccEEE
Q 019562 235 STCSKCGGDGKII 247 (339)
Q Consensus 235 ~~C~~C~G~G~~~ 247 (339)
.+|+.|+|+|.+.
T Consensus 24 ~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 24 EPCPKCLGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEEE
T ss_pred CcCCCCCCcEEEE
Confidence 4566666666554
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.90 E-value=0.00029 Score=47.88 Aligned_cols=28 Identities=29% Similarity=0.736 Sum_probs=17.2
Q ss_pred cccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 019562 208 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (339)
Q Consensus 208 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 247 (339)
..+|+.|+|+|.++. .+|+.|+|.|.++
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVIL 36 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEE
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEE
Confidence 346777777776521 4566666666654
No 56
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.35 E-value=0.14 Score=52.18 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=40.2
Q ss_pred cccccccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhh
Q 019562 38 MIRAAGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEV 95 (339)
Q Consensus 38 ~~~~~~~d~y~iLgv~~~a~~--~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~v 95 (339)
+......|||.+||++.++.. .+|++|||+||+..+++ .+++..+..|+.|
T Consensus 623 ~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 623 WLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 445567789999999776544 66999999999965543 5789999999886
No 57
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=52.16 E-value=16 Score=34.73 Aligned_cols=39 Identities=26% Similarity=0.582 Sum_probs=23.4
Q ss_pred CcccCCCCCCccEE-EEeeecC-Ccce-eeeecCCCCCCccE
Q 019562 207 CIQSCKACWGRGGV-LKTQRTP-FGLI-SQVSTCSKCGGDGK 245 (339)
Q Consensus 207 ~~~~C~~C~G~G~~-~~~~~~~-~g~~-~~~~~C~~C~G~G~ 245 (339)
....|+.|+..|.. +....+| |+-+ .....|+.|+-+-.
T Consensus 11 ~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ 52 (404)
T 2qkd_A 11 IESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNT 52 (404)
T ss_dssp CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEE
T ss_pred ccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchh
Confidence 35678888877753 2333455 3333 33478999986643
No 58
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=48.95 E-value=30 Score=24.29 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH--HHhhccC-chhhhhhhccc
Q 019562 55 NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISS--AYEVLSD-DEKRSVYDRFG 109 (339)
Q Consensus 55 ~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~--Ay~vL~d-~~~r~~yd~~G 109 (339)
-+|.+|.+++|++|....+=+.. ..=++....|.. -|.+|.+ .+++++|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~--~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSN--ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTT--CCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCC--CCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 46899999999999998763322 222222233332 5888876 46667777663
No 59
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=43.05 E-value=25 Score=33.38 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=13.5
Q ss_pred EEEEeCCCCCCCCEEEEcc
Q 019562 266 MKVVIPPGVSNGATMQIRG 284 (339)
Q Consensus 266 l~v~Ip~G~~~G~~i~l~g 284 (339)
|.+.||||...|..-++.|
T Consensus 302 L~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 302 LEFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp GTEEECTTTTCSEEEEHHH
T ss_pred eeEEecCCCCCceEEeHHH
Confidence 3678888887776666654
No 60
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=40.18 E-value=82 Score=27.92 Aligned_cols=11 Identities=55% Similarity=1.174 Sum_probs=7.8
Q ss_pred eecCCCCCCcc
Q 019562 234 VSTCSKCGGDG 244 (339)
Q Consensus 234 ~~~C~~C~G~G 244 (339)
...|+.|+++|
T Consensus 156 P~~Cp~C~~~~ 166 (279)
T 1ltl_A 156 PSLCSECGGRS 166 (279)
T ss_dssp CSCCTTTCCCC
T ss_pred CCcCCCCCCCC
Confidence 35677777777
No 61
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=39.46 E-value=17 Score=26.35 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=27.9
Q ss_pred eeeeCCCCCCCCccCCCCc--ccCCCCCCccEEEEeeecCCcceeeeecCCCCCCccEEE
Q 019562 190 CFETCDSCGGTGAKSSNCI--QSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKII 247 (339)
Q Consensus 190 ~~~~C~~C~G~G~~~~~~~--~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~ 247 (339)
+.+.|..|+..|-...... ..|-.|...|.+.+....+. ....|-.|+.+|.+-
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~----~~~~CYnCG~~GH~~ 59 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPF----HTIYCYNCGGKGHFG 59 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-----------------CCCBCSSSSCBSSCG
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCC----CCCeecccCCCCcCc
Confidence 3567999998887765553 36888998887543222211 125688888888653
No 62
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.38 E-value=36 Score=23.07 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHH---HHHHhhccC-ch-hhhhhhccc
Q 019562 59 QEIKTSYRKLARKYHPDINKSPGAEEKFKEI---SSAYEVLSD-DE-KRSVYDRFG 109 (339)
Q Consensus 59 ~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i---~~Ay~vL~d-~~-~r~~yd~~G 109 (339)
+|..+||.+|.+...=|. +-.=++..+.| ..-|.+|.| |. ++++|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s--~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDS--TWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCS--SCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC--CCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 678899999988764432 23345556666 347999997 54 677888763
No 63
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=36.80 E-value=35 Score=30.41 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=34.3
Q ss_pred ecCCCCCCccEEE--------eecccccCCceEEee--------ceEEEEEeCCC-CCCCC---EEEEccCCCCCCCCCC
Q 019562 235 STCSKCGGDGKII--------IDHCRRCGGNGEVQS--------KRSMKVVIPPG-VSNGA---TMQIRGEGNFDRRRSL 294 (339)
Q Consensus 235 ~~C~~C~G~G~~~--------~~~C~~C~g~g~~~~--------~~~l~v~Ip~G-~~~G~---~i~l~g~G~~~~~~~~ 294 (339)
..|..|+....+. ...|+.|.+.+.... ..+++|+=.|. +..|+ .+.+-=.++-. ..-.
T Consensus 135 f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLv-d~~~ 213 (279)
T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLV-DTLT 213 (279)
T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGT-TCCC
T ss_pred EEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEccccc-CccC
Confidence 4566666443332 246999998763321 22455554332 33333 23333333322 2346
Q ss_pred CcCEEEEEEE
Q 019562 295 AGDLFVALHV 304 (339)
Q Consensus 295 ~GDLiv~i~v 304 (339)
|||-+.+.-|
T Consensus 214 PGDrV~vtGI 223 (279)
T 1ltl_A 214 PGDIVRVTGT 223 (279)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEEE
Confidence 7888764444
No 64
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=34.60 E-value=58 Score=23.14 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHHHhhccC-chhhhhhhccc
Q 019562 57 TLQEIKTSYRKLARKYHPDINKSP---GAEEKFKEISSAYEVLSD-DEKRSVYDRFG 109 (339)
Q Consensus 57 ~~~eIk~ayr~la~~~hPd~~~~~---~~~~~f~~i~~Ay~vL~d-~~~r~~yd~~G 109 (339)
-+..++.+|+.+.+...|...... .+..+|.... +|..+.+ .+++.+|+.|-
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 456688899999888878765532 3445555444 8999866 57778888874
No 65
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=25.54 E-value=68 Score=25.72 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=9.6
Q ss_pred ccccccccCcccccccC
Q 019562 37 GMIRAAGTDYYSTLNVR 53 (339)
Q Consensus 37 ~~~~~~~~d~y~iLgv~ 53 (339)
........|+|+|+--+
T Consensus 50 s~p~~~kld~~~IIk~P 66 (142)
T 3u5e_X 50 AVPHYNRLDSYKVIEQP 66 (142)
T ss_dssp SSCCCCTTCHHHHEEEE
T ss_pred cCCCCCCCCHHHhhhcC
Confidence 33444456777776543
No 66
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.04 E-value=84 Score=22.30 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhccc
Q 019562 62 KTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (339)
Q Consensus 62 k~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~G 109 (339)
-+.+|...+.-||+.. ...+..+.|.+.|..|++.++....+..-
T Consensus 17 ~~e~R~~ik~~~P~~~---~~~eisK~lge~Wk~ls~eeK~~y~~~A~ 61 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS---DEADIIKEGMIRFRVLSTEERKVWANKAK 61 (81)
T ss_dssp HHHHHHHHHHHCTTCC---SHHHHHHHHHHHHSSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCc---hhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456667777899863 36788899999999999888766555543
No 67
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=24.41 E-value=90 Score=20.92 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 62 KTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 62 k~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~----~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH----NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC----HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4456666777788753 56788899999999997777655443
No 68
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.65 E-value=1.2e+02 Score=20.97 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 63 TSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 63 ~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
+.+|...+.-||+. ...+..+.|.+.|..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~----~~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDM----HNSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSC----CHHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 44555566667764 356788899999999998887665554
No 69
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=23.59 E-value=1.4e+02 Score=19.91 Aligned_cols=41 Identities=29% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 65 YRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 65 yr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
.|...+.-||+.. ....+..+.|.+.|..|++.++....+.
T Consensus 16 ~r~~~~~~~p~~~--~~~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 16 CREEHKKKHPDAS--VNFSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHCTTCC--CCHHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHCCCCC--CcHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4444566688754 1246788899999999998877655443
No 70
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=23.40 E-value=70 Score=22.64 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhcc
Q 019562 54 QNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (339)
Q Consensus 54 ~~a~~~eIk~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~~ 108 (339)
++.+...+.+.|-++... +|+.. ..|++|-+.|.-.++|++||-.
T Consensus 8 ~~~SL~~lt~kFi~l~~~-~~~~~---------i~l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGV---------LDLKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTE---------EEHHHHHHHTTTCCTHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh-CCCCc---------CcHHHHHHHhCCccceehhhHH
Confidence 345777888888887764 34421 1367777777655899999964
No 71
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.58 E-value=79 Score=20.71 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=5.3
Q ss_pred cCCCCCCccEE
Q 019562 210 SCKACWGRGGV 220 (339)
Q Consensus 210 ~C~~C~G~G~~ 220 (339)
+|+.|+.....
T Consensus 17 ~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 17 TCPKCGNDTAY 27 (57)
T ss_dssp CCTTTCCSEEE
T ss_pred ECCCCCCCEEE
Confidence 45555553333
No 72
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=21.53 E-value=1.4e+02 Score=21.29 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 63 TSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 63 ~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
+.+|...+.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 20 ~~~r~~~~~~~p~~----~~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 20 NERREQIRTRHPDL----PFPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHCTTC----CHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555666678875 356788899999999998887655554
No 73
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.41 E-value=1.1e+02 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.325 Sum_probs=9.4
Q ss_pred ccCCCCCCccEEEEee
Q 019562 209 QSCKACWGRGGVLKTQ 224 (339)
Q Consensus 209 ~~C~~C~G~G~~~~~~ 224 (339)
..|+.|+....+..+.
T Consensus 10 ~~Cp~Cg~~~a~f~q~ 25 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQV 25 (50)
T ss_dssp SCCSSSCSSCEEEEEE
T ss_pred cCCCCCCCCEEEEEEe
Confidence 4577776666554443
No 74
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=20.17 E-value=1.7e+02 Score=19.87 Aligned_cols=41 Identities=17% Similarity=0.366 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhccCchhhhhhhc
Q 019562 63 TSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDR 107 (339)
Q Consensus 63 ~ayr~la~~~hPd~~~~~~~~~~f~~i~~Ay~vL~d~~~r~~yd~ 107 (339)
+.+|...+.-||+. ...+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~r~~~~~~~p~~----~~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 19 SEYRPKIKGEHPGL----SIGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHCTTC----CHHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555556668875 356788899999999998777654443
Done!