BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019567
         (339 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
           From E.Coli
          Length = 451

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 106/280 (37%), Gaps = 43/280 (15%)

Query: 6   VPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLL-- 63
           +P   + G+S   LG   S     Y FS  I G++ D+   +  L  G+ L +   L   
Sbjct: 51  MPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG 110

Query: 64  -TPWAATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNV 122
             PWA T S A +  +    G  +G+  P        W+   ER   + +     ++G  
Sbjct: 111 FVPWA-TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 169

Query: 123 VGLLLTPIMLSTIGISG--------PFILFXXXXXXXXXXXXXKVTNDPCNSPFVSKSEL 174
           +     P +L  +G++             F             + T   C  P       
Sbjct: 170 I-----PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP------- 217

Query: 175 RLIQAGKSDSVKKRNPPSLRHLLSK-------LPS---WTVIIANITNNWGYFVLLSWMP 224
             I+  K+D     N  + + L +K       LP+   W + IAN+      + +L W P
Sbjct: 218 -PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 276

Query: 225 IYFNTVFNVNLKQAAW------FSAVPWGTMAVSGYMAGK 258
            Y   V +  L +++W      ++ +P GT+ + G+M+ K
Sbjct: 277 TYLKEVKHFALDKSSWAYFLYEYAGIP-GTL-LCGWMSDK 314


>pdb|3M3R|A Chain A, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|B Chain B, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|C Chain C, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|D Chain D, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|E Chain E, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|F Chain F, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|G Chain G, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
          Length = 293

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 191 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 231
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|3ANZ|A Chain A, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|B Chain B, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|C Chain C, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|D Chain D, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|E Chain E, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|F Chain F, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|G Chain G, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|H Chain H, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|I Chain I, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|J Chain J, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|K Chain K, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|L Chain L, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|M Chain M, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|N Chain N, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|O Chain O, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|P Chain P, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Q Chain Q, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|R Chain R, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|S Chain S, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|T Chain T, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|U Chain U, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|V Chain V, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|W Chain W, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|X Chain X, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Y Chain Y, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Z Chain Z, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|AA Chain a, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|BB Chain b, Crystal Structure Of Alpha-Hemolysin
          Length = 302

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 191 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 231
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 152 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 197


>pdb|7AHL|A Chain A, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|B Chain B, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|C Chain C, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|D Chain D, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|E Chain E, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|F Chain F, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|G Chain G, Alpha-Hemolysin From Staphylococcus Aureus
          Length = 293

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 191 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 231
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|3M2L|A Chain A, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|B Chain B, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|C Chain C, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|D Chain D, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|E Chain E, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|F Chain F, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|G Chain G, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
          Length = 294

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 191 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 231
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 152 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 197


>pdb|3M4D|A Chain A, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|B Chain B, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|C Chain C, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|D Chain D, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|E Chain E, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|F Chain F, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|G Chain G, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4E|A Chain A, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|B Chain B, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|C Chain C, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|D Chain D, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|E Chain E, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|F Chain F, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|G Chain G, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
          Length = 293

 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 191 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 231
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
 pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
           From Thermotoga Maritima At 1.65 A Resolution
          Length = 421

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 3   VAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVA 55
           VA+   A K G S  ++  ++  F+  YIF++++G A+   Y G+ +L   +A
Sbjct: 55  VAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAM---YEGRYLLGTAIA 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,798,354
Number of Sequences: 62578
Number of extensions: 318845
Number of successful extensions: 597
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 17
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)