Query 019567
Match_columns 339
No_of_seqs 338 out of 1325
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 03:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.3E-36 7.9E-41 272.7 25.3 326 2-338 48-388 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.2E-35 1.1E-39 264.3 27.7 311 2-336 46-386 (438)
3 2gfp_A EMRD, multidrug resista 100.0 1E-35 3.5E-40 262.3 17.3 309 2-338 20-332 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.2E-31 1.8E-35 240.4 22.6 320 12-337 49-427 (491)
5 4gc0_A D-xylose-proton symport 100.0 2.3E-29 8E-34 229.4 21.8 263 2-266 32-342 (491)
6 2cfq_A Lactose permease; trans 99.9 1.3E-27 4.6E-32 213.3 13.2 315 3-336 28-352 (417)
7 2xut_A Proton/peptide symporte 99.9 5.1E-25 1.7E-29 202.4 21.0 150 6-157 37-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 2.1E-14 7.1E-19 129.0 13.2 154 5-158 275-433 (451)
9 2cfq_A Lactose permease; trans 99.5 6.9E-14 2.3E-18 124.5 13.1 147 16-164 258-405 (417)
10 3o7q_A L-fucose-proton symport 99.4 2.8E-12 9.6E-17 114.6 15.2 138 8-150 286-424 (438)
11 4gc0_A D-xylose-proton symport 99.4 2.5E-11 8.5E-16 110.2 19.5 161 5-165 300-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2.4E-12 8.2E-17 116.9 10.7 154 9-163 311-476 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.9E-10 6.4E-15 100.6 3.3 134 9-145 227-363 (375)
14 2xut_A Proton/peptide symporte 99.0 1.5E-09 5.1E-14 99.3 9.3 146 18-163 336-507 (524)
15 2jln_A MHP1; hydantoin, transp 64.2 79 0.0027 28.2 11.8 54 101-154 20-75 (501)
16 2g9p_A Antimicrobial peptide l 54.5 7.2 0.00025 17.8 1.5 14 36-49 2-15 (26)
17 2dw3_A Intrinsic membrane prot 24.5 1.3E+02 0.0046 18.7 5.5 32 136-167 31-62 (77)
18 4dve_A Biotin transporter BIOY 22.7 1.8E+02 0.0062 22.1 5.6 25 23-47 99-123 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.3e-36 Score=272.66 Aligned_cols=326 Identities=15% Similarity=0.160 Sum_probs=250.1
Q ss_pred CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhh----hcchhHHHH
Q 019567 2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAA----THSTASLLA 77 (339)
Q Consensus 2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 77 (339)
++.+|.+.+|+ .|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++ +. ++|++.+++
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 124 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM--GFVPWATSSIAVMFV 124 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCHHHHSSSSHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH--HhhhhccccHHHHHH
Confidence 35678899999 999999999999999999999999999999999999999999999999999 66 899999999
Q ss_pred HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Q 019567 78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWT 156 (339)
Q Consensus 78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~~~~~~~ 156 (339)
+|+++|++.+...+...+++.|++|+++|++++++.+.+.++|..++|.+++.+.+..| ||+.|++.++++++..++.+
T Consensus 125 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~ 204 (451)
T 1pw4_A 125 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 204 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889898 99999999998888777777
Q ss_pred hhccCCCCCCCCCChHHHHH--HHhCCccccccCCCcc--HHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhC
Q 019567 157 SKVTNDPCNSPFVSKSELRL--IQAGKSDSVKKRNPPS--LRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN 232 (339)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 232 (339)
+..||+|++.+..++++.+. .++.+++++++....+ .++.+++|+++...+..++.....+....++|.|+++.+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 284 (451)
T 1pw4_A 205 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH 284 (451)
T ss_dssp HHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred hhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788776543222111100 0000000111111112 4778899999999999999999999999999999999889
Q ss_pred CccchhhHhhHHhHHHHHHHHhhhhhhhHHH--HHhccchHHHHHHHHHHHhhhhhhHhhhhhccc--chhHHHHHHHHH
Q 019567 233 VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL--IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIA 308 (339)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 308 (339)
+++.+.+.+.....++.+++.++.|++.||+ ++| +.......+...++.+++...+ +.+.......+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI 356 (451)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 9999999999999999999999999999998 654 2333333333335555555543 333333333333
Q ss_pred HHHhhhcccchhhhhh--hcccchhhhhhhhc
Q 019567 309 LSLSSFSQAGYLLNIQ--IAQDFSTALQIQQE 338 (339)
Q Consensus 309 ~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q~ 338 (339)
....+...+....... ..++++|+.+|..+
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 2333333333334444 44567888887653
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.2e-35 Score=264.28 Aligned_cols=311 Identities=12% Similarity=0.071 Sum_probs=245.5
Q ss_pred CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhh-hhhcchhHHHHHHH
Q 019567 2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPW-AATHSTASLLAVRA 80 (339)
Q Consensus 2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~ 80 (339)
++..|.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.+ ..++|++.++++|+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999988722 23799999999999
Q ss_pred HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhh-hhcc-----------------------
Q 019567 81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIG----------------------- 136 (339)
Q Consensus 81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~-~~~~----------------------- 136 (339)
++|++.+...+...+++.|++|+|+|++++++.+.+.++|..++|.+++.+. +..+
T Consensus 126 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (438)
T 3o7q_A 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLV 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988 5544
Q ss_pred --chHHHHHHHHHHHHHHHHHHhh-ccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhH
Q 019567 137 --ISGPFILFSSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNN 213 (339)
Q Consensus 137 --w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (339)
||+.|++.+++.++..+..++. .||++++++++ +++++...++++++|+|+++...+..++..
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD--------------AKQGSFSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC--------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--------------ccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence 9999988887776655544432 23333221110 011222246788999999999999989888
Q ss_pred HHHHHHHHhhhhh-hhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhh
Q 019567 214 WGYFVLLSWMPIY-FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCL 292 (339)
Q Consensus 214 ~~~~~~~~~~~~~-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (339)
........++|.| +++.+|+++.+++.......++.++++++.|++.||+++| +.+..+.++..++.++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~---------~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH---------KVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHH
Confidence 8889999999999 8888899999999999999999999999999999999865 45556666666666666
Q ss_pred hcccchhHHHHHHHHHHHHhhhcccchhhhhh-hcccchhhhhhh
Q 019567 293 NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQ-IAQDFSTALQIQ 336 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~g~~~g~ 336 (339)
...++.+..... .+...+.+...+....... ..|++++...+.
T Consensus 343 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
T 3o7q_A 343 AFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSF 386 (438)
T ss_dssp HHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHH
T ss_pred HHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccccchhhH
Confidence 666555443333 3333334444444444434 445556655543
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1e-35 Score=262.29 Aligned_cols=309 Identities=13% Similarity=0.121 Sum_probs=247.7
Q ss_pred CcchhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHH
Q 019567 2 SVAVVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAF 81 (339)
Q Consensus 2 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l 81 (339)
++.+|.+.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++. ..++|++.+++.|++
T Consensus 20 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~l 97 (375)
T 2gfp_A 20 IPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--VTTSSLTVLIAASAM 97 (375)
T ss_dssp HHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH--HHhccHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999 558999999999999
Q ss_pred HHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccC
Q 019567 82 FGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTN 161 (339)
Q Consensus 82 ~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~ 161 (339)
+|++.+...+...+++.|++|+|+|++++++.+.+..+|..++|.+++.+.+..+||+.|++.++..++..+......||
T Consensus 98 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 98 QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 99999999999999999999999999999999999999999999999999998999999999888887766655556666
Q ss_pred CCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHh
Q 019567 162 DPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWF 241 (339)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 241 (339)
+++++++ +++...++++++|+|+++...+..++..........+.|.|+++.+|.++.+.+.+
T Consensus 178 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 240 (375)
T 2gfp_A 178 TRPVDAP-----------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSIL 240 (375)
T ss_dssp CSTTTCC-----------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHH
T ss_pred cCCCCcc-----------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6543221 11223356788899999999998898888999999999999999889999999999
Q ss_pred hHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHh-hhhhhHhhhhhc--ccchhHHHHHHHHHHHHhhhcccc
Q 019567 242 SAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGF-IGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAG 318 (339)
Q Consensus 242 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 318 (339)
.....++.++++++.+++.||.+++ ....... ............ .++.+.......+.....+...+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~r~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 311 (375)
T 2gfp_A 241 FILPIPAAFFGAWFAGRPNKRFSTL---------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL 311 (375)
T ss_dssp HHTHHHHHHHHHHHHHTTTTHHHHH---------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999998753 1111111 111122112221 113333333334444455555666
Q ss_pred hhhhhh-hcccchhhhhhhhc
Q 019567 319 YLLNIQ-IAQDFSTALQIQQE 338 (339)
Q Consensus 319 ~~~~~~-~~p~~~g~~~g~q~ 338 (339)
...... ..|+++|+.+|..+
T Consensus 312 ~~~~~~~~~p~~~g~~~g~~~ 332 (375)
T 2gfp_A 312 ATSGAMEPFPFLAGTAGALVG 332 (375)
T ss_dssp THHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccchHHHHHH
Confidence 666666 66788998887653
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=5.2e-31 Score=240.35 Aligned_cols=320 Identities=14% Similarity=0.119 Sum_probs=220.8
Q ss_pred hCCCccchhHHHHHHHHHHHHHHhhhHHHhhh-hcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcch
Q 019567 12 FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDK-YGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAM 90 (339)
Q Consensus 12 ~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~ 90 (339)
+|.|+.+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++ +.++|++.++++|+++|++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL--ALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH--HSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999 899999999999999999999 668999999999999999999999
Q ss_pred hhhHHHHhhhCCcch--hhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCCCC--
Q 019567 91 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS-- 166 (339)
Q Consensus 91 ~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-- 166 (339)
+...+++.|++|+++ |++++++++.+.++|..++|.+++.+.++.|||+.|++.++..++..+......|+..+++
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999888 7788888999999999999999999999999999999988777665555544433322211
Q ss_pred --CC-CChHHHHH-HHh------------------CCcccc---------------------ccCCCccHHHHhcchhHH
Q 019567 167 --PF-VSKSELRL-IQA------------------GKSDSV---------------------KKRNPPSLRHLLSKLPSW 203 (339)
Q Consensus 167 --~~-~~~~~~~~-~~~------------------~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 203 (339)
+. .++++.+. .+. +..+.+ .++...+..+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 11 11111111 000 000000 000011111111222344
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhh
Q 019567 204 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI 283 (339)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 283 (339)
...+..++....+.....++|.|.++..+.+..+.+.......+..+++.++.+++.||++||+... ...+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence 4444555555556666678888998877888778888889999999999999999999998773211 122334555
Q ss_pred hhhhHhhhhhcc---------cchhHHHHHHHHHHHHhhhcccchhhhhh--hcccchhhhhhhh
Q 019567 284 GPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQ--IAQDFSTALQIQQ 337 (339)
Q Consensus 284 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~g~~~g~q 337 (339)
+.+++..++... .+.+.......+.....+...+....... ..++++|..+|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~ 427 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMW 427 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555554444331 13333333333333334444444555555 4456688877754
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=2.3e-29 Score=229.40 Aligned_cols=263 Identities=17% Similarity=0.158 Sum_probs=190.7
Q ss_pred CcchhhhHhHhCCC--------ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhh------
Q 019567 2 SVAVVPLAAKFGWS--------SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWA------ 67 (339)
Q Consensus 2 ~~~~~~i~~~~~~s--------~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~------ 67 (339)
+..+|.++++++.+ +.+.|++.+++.+|..++++++|+++||+|||+++.++.+++.++++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~ 111 (491)
T 4gc0_A 32 SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTS 111 (491)
T ss_dssp GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSC
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45678888887532 3467899999999999999999999999999999999999999999998421
Q ss_pred ----------hhcchhHHHHHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhh---
Q 019567 68 ----------ATHSTASLLAVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--- 134 (339)
Q Consensus 68 ----------~~~~~~~~~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~--- 134 (339)
.++|++.++++|+++|+|.|...+....+++|+.|+++|++..++.+.+...|..+++.++..+...
T Consensus 112 ~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 112 INPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred hcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 4789999999999999999999999999999999999999999999999999999999888776543
Q ss_pred -----ccchHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCChHHHH--HHHhC-------------CccccccCCCccHH
Q 019567 135 -----IGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKSELR--LIQAG-------------KSDSVKKRNPPSLR 194 (339)
Q Consensus 135 -----~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~~ 194 (339)
.+||..+.+..+..++. +...+..||+|++...+.++++. ..++. +++.+++++.....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRL 270 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHH
Confidence 34777777766655554 44455679998753222111111 00000 00000011111222
Q ss_pred HHhcchhHHHHHHHH-HhhHHHHHHHHHhhhhhhhhhhCCccchhhHhhHHhHHHHHHHHhhhhhhhHHHHHh
Q 019567 195 HLLSKLPSWTVIIAN-ITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKA 266 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 266 (339)
..++.++........ +......+....+.|.+.++ .+.+..+........++...++.++.+++.||+|||
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr 342 (491)
T 4gc0_A 271 LMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342 (491)
T ss_dssp HHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred HHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 333444444433333 33444456666677766665 577777777777788888999999999999999986
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=1.3e-27 Score=213.31 Aligned_cols=315 Identities=15% Similarity=0.078 Sum_probs=197.4
Q ss_pred cchhh-hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHh-hhhhcch-hHHHHHH
Q 019567 3 VAVVP-LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTP-WAATHST-ASLLAVR 79 (339)
Q Consensus 3 ~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~r 79 (339)
+.+|. +++++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++..... ....+.. ..+...+
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGS 107 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 5677999999999999999999999999999999999999999998877755321110 0112211 1234556
Q ss_pred HHHHhhhhcchhhhHHHHhhhCCc--chhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 019567 80 AFFGLAEGVAMPAMSTLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTS 157 (339)
Q Consensus 80 ~l~G~g~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 157 (339)
.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+..+.
T Consensus 108 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 186 (417)
T 2cfq_A 108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFF 186 (417)
T ss_dssp HGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHH
Confidence 666666655555555555555543 456777888888899999999999999887 58999999877665444443333
Q ss_pred hccCCCCCCCCCChHHHHHHHhCCccccccCCCccHHHHhcchhHHHHHHHHHhhHHHHHHHHHhhhhhhhhhhCC---c
Q 019567 158 KVTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV---N 234 (339)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---~ 234 (339)
..||++++.+..++ +++++++....++++++++|+++...+..+.....+....+++|.|+++.++. +
T Consensus 187 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (417)
T 2cfq_A 187 AKTDAPSSATVANA---------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257 (417)
T ss_dssp SCCCCSCSSCSSSS---------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHH
T ss_pred cCcccccccccccc---------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33333221100000 00001111123456788999988777666655556666667788888775442 2
Q ss_pred cchhhHhhHHhHHHHHHHHhhhhhhhHHHHHhccchHHHHHHHHHHHhhhhhhHhhhhhcccchhHHHHHHHHHHHHhhh
Q 019567 235 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSF 314 (339)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (339)
....+.......++.+++.++.+++.||+++| +.+..+..+.++....+...++.+.......+.......
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 328 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGK---------NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH---------HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34456777777778889999999999999875 444456666666665555555544332222222222222
Q ss_pred cccchhhhhh--hcccchhhhhhh
Q 019567 315 SQAGYLLNIQ--IAQDFSTALQIQ 336 (339)
Q Consensus 315 ~~~~~~~~~~--~~p~~~g~~~g~ 336 (339)
.......... ..++.+|+.++.
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 329 LLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHH
Confidence 2222333333 344667776554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=5.1e-25 Score=202.37 Aligned_cols=150 Identities=17% Similarity=0.240 Sum_probs=136.0
Q ss_pred hhhHhHhC------CCccchhHHHHHHHHHHHHHHhhhHHHhhhh-cchHHHHHHHHHHHHHHHHHhhhhhc-chhHHHH
Q 019567 6 VPLAAKFG------WSSSFLGIVQSSFLWGYIFSSVIGGALVDKY-GGKKVLAWGVALWSLSTLLTPWAATH-STASLLA 77 (339)
Q Consensus 6 ~~i~~~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-G~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (339)
+.+++++| .|+.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++.+++ +.++ |++.+++
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 114 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL--AIFEHSVQGFYT 114 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH--HHTSSCHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHhcccHHHHHH
Confidence 45678899 9999999999999999999999999999999 99999999999999999998 5578 9999999
Q ss_pred HHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHH---HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567 78 VRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGI---CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLST 154 (339)
Q Consensus 78 ~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~ 154 (339)
.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..|||+.|++.++..++..+.
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876666 999999999999999999999899999999988877665555
Q ss_pred HHh
Q 019567 155 WTS 157 (339)
Q Consensus 155 ~~~ 157 (339)
.+.
T Consensus 195 ~~~ 197 (524)
T 2xut_A 195 FWL 197 (524)
T ss_dssp HHS
T ss_pred HHH
Confidence 443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.57 E-value=2.1e-14 Score=128.99 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=131.5
Q ss_pred hhhhHhH-hCCCccchhHHHHHHHHHHHHHHhhhHHHhhhh--cchHHHHHHHHHHH-HHHHHHhhhhhcchhHHHHHHH
Q 019567 5 VVPLAAK-FGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKY--GGKKVLAWGVALWS-LSTLLTPWAATHSTASLLAVRA 80 (339)
Q Consensus 5 ~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--G~r~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~ 80 (339)
.|.+.++ +|.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+...++.+.+.+..+
T Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (451)
T 1pw4_A 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 354 (451)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 3444445 899999999999999999999999999999999 99999988877766 5665552211247778888889
Q ss_pred HHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHH-HHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 019567 81 FFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHL-GNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSK 158 (339)
Q Consensus 81 l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~ 158 (339)
+.|++.+...+....++.|.+|+++|++++++.+....+ |..++|.+.+.+.+..||+..|++.+++.++..+..+..
T Consensus 355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888899999999999999999999999999 999999999999999999999999888877766655544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=6.9e-14 Score=124.53 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=123.6
Q ss_pred ccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhhcchhhhHH
Q 019567 16 SSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEGVAMPAMST 95 (339)
Q Consensus 16 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~~~~~~~~~ 95 (339)
..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.. ...++.+.+++..++.+++.+...+....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS--SFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--TTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888889999999999999999999999888888877666 44678888888888888887777777889
Q ss_pred HHhhhCCcchhhHHHHH-HHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhccCCCC
Q 019567 96 LTSRWFPSHERASAIGI-CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPC 164 (339)
Q Consensus 96 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 164 (339)
++.|.+|++.|+++.+. ++....+|..++|.+++.+.+..|++..|.+.++++++..+..+...||+++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999998 4888889999999999999998899999999888887776666655555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=2.8e-12 Score=114.62 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=117.3
Q ss_pred hHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHhhhh
Q 019567 8 LAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATHSTASLLAVRAFFGLAEG 87 (339)
Q Consensus 8 i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~~ 87 (339)
+++.+|.++.+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++.++. ...++.+.++. -++.|++.+
T Consensus 286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~ 362 (438)
T 3o7q_A 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLIS--AFAGGHVGLIA-LTLCSAFMS 362 (438)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCCHHHHHHH-HHHHHHHHT
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHcCCcHHHHH-HHHHHHHHH
Confidence 344469999999999999999999999999999999999999999999998888877 44666655444 488899999
Q ss_pred cchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhcc-chHHHHHHHHHHHH
Q 019567 88 VAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLL 150 (339)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-w~~~f~~~~~~~~~ 150 (339)
...+...++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..| ++..|++.++..++
T Consensus 363 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 424 (438)
T 3o7q_A 363 IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_dssp THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999855 888888877 566999999999999999998 99999876555444
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.39 E-value=2.5e-11 Score=110.18 Aligned_cols=161 Identities=17% Similarity=0.085 Sum_probs=121.0
Q ss_pred hhhhHhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHHHHHHHHHHhhhhhc--chhHHHHHHHHH
Q 019567 5 VVPLAAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVALWSLSTLLTPWAATH--STASLLAVRAFF 82 (339)
Q Consensus 5 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~ 82 (339)
.|.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+..... +....++.-++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 300 APEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFY 379 (491)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 356677788887777777788888899999999999999999999999988888777665332221 112222222222
Q ss_pred Hhhh-hcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhh------hccchHHHHHHHHHHHHHHHHH
Q 019567 83 GLAE-GVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLS------TIGISGPFILFSSLGLLWLSTW 155 (339)
Q Consensus 83 G~g~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~------~~~w~~~f~~~~~~~~~~~~~~ 155 (339)
..+. ....+....+.+|.+|.+.|++++|+......+|..+++.+...+.+ ..++...|++.++++++..+..
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2221 22346778899999999999999999999999999998887766543 3567788999999999988888
Q ss_pred HhhccCCCCC
Q 019567 156 TSKVTNDPCN 165 (339)
Q Consensus 156 ~~~~~~~~~~ 165 (339)
+++.||++.+
T Consensus 460 ~~~~PETkg~ 469 (491)
T 4gc0_A 460 WKFVPETKGK 469 (491)
T ss_dssp HHHCCCCTTC
T ss_pred HheecCCCCC
Confidence 8899998754
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=2.4e-12 Score=116.92 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=120.9
Q ss_pred HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHH-----HHHHHHHHHHHHHhhhh-------hcchhHHH
Q 019567 9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLA-----WGVALWSLSTLLTPWAA-------THSTASLL 76 (339)
Q Consensus 9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~-----~~~~~~~~~~~~~~~~~-------~~~~~~~~ 76 (339)
++.++.+..+.++..+...++..++.++.+++.||+|||+... .+.++.+++.++..+.. ..+.+.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
T 4aps_A 311 AERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLV 390 (491)
T ss_dssp HHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHH
T ss_pred HHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHH
Confidence 3446777678899999999999999999999999999987655 67777777666653211 12677888
Q ss_pred HHHHHHHhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 019567 77 AVRAFFGLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWT 156 (339)
Q Consensus 77 ~~r~l~G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~~~~~~~~~~~~ 156 (339)
+.-++.|++.+...+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+ .++...|.+.+..+++..+..+
T Consensus 391 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 391 GSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999899999999999999999999999999999999999999887765 4677888888888777766666
Q ss_pred hhccCCC
Q 019567 157 SKVTNDP 163 (339)
Q Consensus 157 ~~~~~~~ 163 (339)
...++.+
T Consensus 470 ~~~~~~~ 476 (491)
T 4aps_A 470 FLSKRIQ 476 (491)
T ss_dssp HC-----
T ss_pred HHHHHHH
Confidence 6555443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.97 E-value=1.9e-10 Score=100.64 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=107.0
Q ss_pred HhHhCCCccchhHHHHHHHHHHHHHHhhhHHHhhhhcchHHHHHHHHH-HHHHHH--HHhhhhhcchhHHHHHHHHHHhh
Q 019567 9 AAKFGWSSSFLGIVQSSFLWGYIFSSVIGGALVDKYGGKKVLAWGVAL-WSLSTL--LTPWAATHSTASLLAVRAFFGLA 85 (339)
Q Consensus 9 ~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~G~r~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~r~l~G~g 85 (339)
++++|.|+.+.+++.+...++..++.++.+++.||+++|. ..+..+ ...+.. .......++.+.+++..++.|++
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 4458899999999999999999999999999999998832 233322 222222 11111124677788889999999
Q ss_pred hhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhccchHHHHHHH
Q 019567 86 EGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFS 145 (339)
Q Consensus 86 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~w~~~f~~~~ 145 (339)
.+...+....++.|..| ++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999997 899999999999999999999999999988878888877643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.97 E-value=1.5e-09 Score=99.32 Aligned_cols=146 Identities=12% Similarity=0.065 Sum_probs=102.0
Q ss_pred chhHHHHHHHHHHHHHHhhhHHHh----hhhcc----hHHHHHHHHHHHHHHHHHhhhh-------hcchhHHHHHHHHH
Q 019567 18 FLGIVQSSFLWGYIFSSVIGGALV----DKYGG----KKVLAWGVALWSLSTLLTPWAA-------THSTASLLAVRAFF 82 (339)
Q Consensus 18 ~~g~~~s~~~~~~~i~~~~~g~l~----dr~G~----r~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~r~l~ 82 (339)
..+++.+...++..+..++.+++. ||.|+ ++.+..+.++.+++.++.++.. ..+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666667777777777764 55543 3566777777777776663211 13677788889999
Q ss_pred HhhhhcchhhhHHHHhhhCCcchhhHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cc---------hHHHHHHHHHHHHH
Q 019567 83 GLAEGVAMPAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTI--GI---------SGPFILFSSLGLLW 151 (339)
Q Consensus 83 G~g~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~l~~~~--~w---------~~~f~~~~~~~~~~ 151 (339)
|++.+...+....++.|..|+++|++++|+.+....+|..++|.+.+.+.+.. +| +..|++.+.++++.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887632 23 33477777776666
Q ss_pred HHHHHhhccCCC
Q 019567 152 LSTWTSKVTNDP 163 (339)
Q Consensus 152 ~~~~~~~~~~~~ 163 (339)
.+..++..++.+
T Consensus 496 ~~~~~~~~~~~~ 507 (524)
T 2xut_A 496 AIVFALYARSYQ 507 (524)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHHHhc
Confidence 655555544443
No 15
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=64.18 E-value=79 Score=28.15 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=28.8
Q ss_pred CCcchh-hHHHHHHHHHHHHHHHHHHh-HHHHhhhhccchHHHHHHHHHHHHHHHH
Q 019567 101 FPSHER-ASAIGICMGGFHLGNVVGLL-LTPIMLSTIGISGPFILFSSLGLLWLST 154 (339)
Q Consensus 101 ~~~~~r-~~~~~~~~~~~~~g~~~~~~-l~~~l~~~~~w~~~f~~~~~~~~~~~~~ 154 (339)
.|+++| .....+.....+....++.. +++.+..-.+|+..++...+-.++..++
T Consensus 20 vp~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~ 75 (501)
T 2jln_A 20 TRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVIL 75 (501)
T ss_dssp CCGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHH
Confidence 455666 45555555555544444444 3333434567777777655555544433
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=54.55 E-value=7.2 Score=17.78 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=11.0
Q ss_pred hhHHHhhhhcchHH
Q 019567 36 IGGALVDKYGGKKV 49 (339)
Q Consensus 36 ~~g~l~dr~G~r~~ 49 (339)
+.|.+..++|||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999863
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=24.45 E-value=1.3e+02 Score=18.69 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=15.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 019567 136 GISGPFILFSSLGLLWLSTWTSKVTNDPCNSP 167 (339)
Q Consensus 136 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (339)
||-.++.+...+.++.+-..=..+||+.++.+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 34444444443333333334445677665544
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.74 E-value=1.8e+02 Score=22.13 Aligned_cols=25 Identities=12% Similarity=0.309 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhcch
Q 019567 23 QSSFLWGYIFSSVIGGALVDKYGGK 47 (339)
Q Consensus 23 ~s~~~~~~~i~~~~~g~l~dr~G~r 47 (339)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888889999999999987543
Done!