BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019569
         (339 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I4T|A Chain A, Crystal Structure Of Putative Diphthine Synthase From
           Entamoeba Histolytica
          Length = 292

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 8/80 (10%)

Query: 213 LKDPNVSERSSETLNTS---YLPIRENVSNQTI---LKVSRQTYPGFWWFWPITLKLGNA 266
           L D  V ERS E++      + P R    NQ I   L+V ++ + G +     T+ +G A
Sbjct: 183 LLDIKVKERSEESIIKGRDIFEPPRYMTINQCIEQLLEVEKEQHLGVYD--EDTMVVGMA 240

Query: 267 RIVLSNKKIVLGCLIFLAYY 286
           R+  +++KIV G +  L +Y
Sbjct: 241 RVACADQKIVYGKMKDLLHY 260


>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
 pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
           Maltose
          Length = 637

 Score = 28.9 bits (63), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 52  NEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIP 94
            E  YD++  +   F   ++E+G++ DI  EL L F +  + P
Sbjct: 425 KEAGYDVILGSSWYFAGRVEEIGKLPDIAEELVLPFLASVETP 467


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,561,933
Number of Sequences: 62578
Number of extensions: 369031
Number of successful extensions: 900
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 5
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)