BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019569
(339 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q72WD4|RECF_LEPIC DNA replication and repair protein RecF OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=recF PE=3 SV=1
Length = 365
Score = 32.3 bits (72), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 95 VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLG 154
+ VLLT + L+I EG A+ R+F++ F+S + +YL + +Y ++++ L
Sbjct: 115 ITVLLTPMDLKIIEGGPAERRKFIDAFISSFDP----FYLEFLL-EYNKILKHRNALLKS 169
Query: 155 TVLNDVDLAI---SWIENAALPEENRQDLLRRLHSLYSL---KASAGSQGSSLLPDDFQQ 208
L+ L+I +E R++++ L+S Y + K S G G L+
Sbjct: 170 GNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSGGKDGLELI------ 223
Query: 209 AHPSLKDPN 217
P++KD +
Sbjct: 224 YKPNVKDQD 232
>sp|O27158|CAS3_METTH CRISPR-associated nuclease/helicase Cas3 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=cas3 PE=1 SV=1
Length = 830
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 38 SSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKE--LGRVADI---LNELKLLFT-SVT 91
+ + RLRDS+ ++E+ D++ S F++ LKE LGR D+ + +L+ + ++
Sbjct: 331 NDIFMRLRDSDGYFSEDEIDILHSTA--FIEYLKEERLGRGTDLDSMMTSARLMASPALL 388
Query: 92 DIPVQVLLTGV 102
P QVL+T +
Sbjct: 389 TTPDQVLITSL 399
>sp|Q056V0|RECF_LEPBL DNA replication and repair protein RecF OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=recF PE=3 SV=1
Length = 365
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 95 VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLG 154
+ VLLT + L+I EG A+ R+F++ F+S + +YL + +Y ++++ + LL
Sbjct: 115 ITVLLTPMDLKIIEGGPAERRKFIDAFISSFDP----FYLECLL-EYNKILK-HRNALLK 168
Query: 155 TVLNDVDLAISW----IENAALPEENRQDLLRRLHSLYSLKASAGSQGSSLLPDDFQQAH 210
T ++D W IE L R++++ L+S Y + S G D+ + +
Sbjct: 169 TGISDASHLSIWDRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGK----DELEMIY 224
Query: 211 -PSLKDPN 217
P++KD +
Sbjct: 225 GPNVKDKD 232
>sp|Q04WF5|RECF_LEPBJ DNA replication and repair protein RecF OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=recF PE=3 SV=1
Length = 365
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 65/128 (50%), Gaps = 15/128 (11%)
Query: 95 VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLG 154
+ VLLT + L+I EG A+ R+F++ F+S + +YL + +Y ++++ + LL
Sbjct: 115 ITVLLTPMDLKIIEGGPAERRKFIDAFISSFDP----FYLECLL-EYNKILK-HRNALLK 168
Query: 155 TVLNDVDLAISW----IENAALPEENRQDLLRRLHSLYSLKASAGSQGSSLLPDDFQQAH 210
T ++D W IE L R++++ L+S Y + S G D+ + +
Sbjct: 169 TGISDASHLSIWDRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGK----DELEMIY 224
Query: 211 -PSLKDPN 217
P++KD +
Sbjct: 225 GPNVKDKD 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,341,105
Number of Sequences: 539616
Number of extensions: 4680323
Number of successful extensions: 12387
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12385
Number of HSP's gapped (non-prelim): 15
length of query: 339
length of database: 191,569,459
effective HSP length: 118
effective length of query: 221
effective length of database: 127,894,771
effective search space: 28264744391
effective search space used: 28264744391
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)