Query 019569
Match_columns 339
No_of_seqs 18 out of 20
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 02:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07163 Pex26: Pex26 protein; 97.4 0.004 8.6E-08 60.9 13.2 157 21-188 42-203 (309)
2 PF01102 Glycophorin_A: Glycop 54.5 9.9 0.00022 33.1 2.3 19 276-294 74-94 (122)
3 smart00671 SEL1 Sel1-like repe 51.2 11 0.00023 23.7 1.5 29 141-171 4-32 (36)
4 COG4993 Gcd Glucose dehydrogen 48.4 29 0.00063 38.2 5.0 59 259-317 15-81 (773)
5 PLN00061 photosystem II protei 46.5 27 0.00058 31.9 3.8 63 111-186 85-148 (150)
6 PRK14857 tatA twin arginine tr 43.8 56 0.0012 27.3 5.0 34 282-315 16-50 (90)
7 PRK14858 tatA twin arginine tr 36.6 78 0.0017 27.3 4.9 30 286-315 18-48 (108)
8 COG3629 DnrI DNA-binding trans 33.4 44 0.00096 32.6 3.4 52 259-310 2-74 (280)
9 cd08779 Death_PIDD Death Domai 31.9 1.1E+02 0.0023 24.6 4.8 51 36-87 25-86 (86)
10 PF10055 DUF2292: Uncharacteri 31.2 22 0.00047 25.7 0.6 17 260-276 12-28 (38)
11 COG4008 Predicted metal-bindin 28.4 79 0.0017 28.8 3.8 97 67-182 32-137 (153)
12 PF15470 DUF4637: Domain of un 28.2 28 0.0006 32.1 1.0 32 229-261 69-101 (173)
13 COG1826 TatA Sec-independent p 25.5 1.2E+02 0.0026 24.7 4.2 26 288-313 21-46 (94)
14 PF07463 NUMOD4: NUMOD4 motif; 24.5 15 0.00032 26.8 -1.2 16 14-29 2-18 (51)
15 PF09087 Cyc-maltodext_N: Cycl 24.0 28 0.0006 28.8 0.2 10 248-257 1-10 (88)
16 COG4736 CcoQ Cbb3-type cytochr 23.5 68 0.0015 25.2 2.2 21 275-295 17-37 (60)
17 KOG2675 Adenylate cyclase-asso 23.5 2E+02 0.0044 30.5 6.2 102 52-186 104-208 (480)
18 PF12273 RCR: Chitin synthesis 22.9 70 0.0015 26.9 2.4 9 283-291 17-25 (130)
19 PHA02085 hypothetical protein 22.8 30 0.00066 29.0 0.2 18 129-146 70-87 (87)
20 PF15265 FAM196: FAM196 family 22.7 62 0.0013 34.4 2.4 16 174-189 463-478 (514)
21 cd02663 Peptidase_C19G A subfa 21.8 63 0.0014 29.9 2.0 49 77-125 21-79 (300)
22 TIGR01410 tatB twin arginine-t 21.7 1.6E+02 0.0034 23.7 4.0 33 283-315 14-47 (80)
23 PF14561 TPR_20: Tetratricopep 21.2 79 0.0017 25.4 2.2 49 16-64 24-73 (90)
24 PRK06531 yajC preprotein trans 21.0 74 0.0016 27.4 2.2 25 284-308 15-39 (113)
25 PF01231 IDO: Indoleamine 2,3- 20.5 4.1E+02 0.0089 27.1 7.6 112 19-130 154-282 (422)
26 TIGR01411 tatAE twin arginine- 20.3 2E+02 0.0044 21.1 4.0 26 288-313 19-44 (47)
No 1
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=97.35 E-value=0.004 Score=60.93 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=115.6
Q ss_pred cchhhhhhhHHHHHHhHHHHHHHHhhcCCCC--chhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhcccccccceeee
Q 019569 21 SESYLVCSMYEEAASLGSSVLKRLRDSNNNY--NEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQVL 98 (339)
Q Consensus 21 sE~YLVs~myeeAas~AsSVl~~lr~~~~~~--d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~vl 98 (339)
+|--.|.=.|.-|..+.-.=++.|-.....+ +.--.|.=-|-+.|=+|||-||+|=.|.+.=.-+.|+-+..||.+|+
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 3444445556666666666666664433222 22344666677899999999999999999999999999999999999
Q ss_pred eechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhh---hhcChhhhhhHhhhcCCChh
Q 019569 99 LTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGT---VLNDVDLAISWIENAALPEE 175 (339)
Q Consensus 99 LtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~---~l~d~~~AiSWvEka~LpEe 175 (339)
---+|+-.--|....+.+.-..+|. ..++|. --+|--|+|+|-.+||-- ...-.|++ +..+.++||
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~---~p~Nq~-----lp~y~~vaELyLl~VLlPLG~~~eAeelv---~gs~af~Ee 190 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQ---DPSNQS-----LPEYGTVAELYLLHVLLPLGHFSEAEELV---VGSAAFTEE 190 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh---CcccCC-----chhhHHHHHHHHHHHHhccccHHHHHHHH---hcCCCCCHH
Confidence 9999998888888888888777773 222322 234999999999999753 22223333 778999999
Q ss_pred hHHHHHHHHhhhh
Q 019569 176 NRQDLLRRLHSLY 188 (339)
Q Consensus 176 ~RQ~LLrkLhsl~ 188 (339)
.||+.|.-+|.-.
T Consensus 191 Qr~~aL~~v~~~~ 203 (309)
T PF07163_consen 191 QRQEALQAVEEAR 203 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888433
No 2
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.52 E-value=9.9 Score=33.07 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=12.4
Q ss_pred HHHHH--HHHHHHHHhhchhh
Q 019569 276 VLGCL--IFLAYYVIQRKRTD 294 (339)
Q Consensus 276 ~l~~~--~l~~~YvlrRK~a~ 294 (339)
|+|.. |||++|++||.++.
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 55544 67789999887653
No 3
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=51.18 E-value=11 Score=23.67 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=20.8
Q ss_pred hhHHhhhhhhHhhhhhhcChhhhhhHhhhcC
Q 019569 141 YLEVVEMYAVTLLGTVLNDVDLAISWIENAA 171 (339)
Q Consensus 141 Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka~ 171 (339)
.+.+..+|.-.. .+-+|.+.|+.|.++|+
T Consensus 4 ~~~lg~~~~~G~--g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 4 QYNLGQMYEYGL--GVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHcCC--CCCcCHHHHHHHHHHHH
Confidence 445556664443 35789999999999986
No 4
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=48.43 E-value=29 Score=38.21 Aligned_cols=59 Identities=25% Similarity=0.468 Sum_probs=40.7
Q ss_pred ccccccceEEEeeCch---HHHHHHHHH-HHHHHhhchhhhHHHH----HHHHHHHHHHHHHHHHHh
Q 019569 259 ITLKLGNARIVLSNKK---IVLGCLIFL-AYYVIQRKRTDIRRSA----WRKILSVKKALVDLWQLA 317 (339)
Q Consensus 259 i~lK~Gn~~ivi~~GK---i~l~~~~l~-~~YvlrRK~a~l~R~v----~rq~~s~kral~D~wQLA 317 (339)
+-|-.|.++.|.=.|- |+-|+.+++ ...+||||+|+|-=.. .--+=++=++=+|+|||.
T Consensus 15 l~l~~gg~~l~~lggs~yy~iagl~~l~~~~ll~~~k~aal~lya~~~~~t~~wavwevg~d~w~l~ 81 (773)
T COG4993 15 LALLIGGIWLVALGGSWYYLIAGLVLLLSAWLLLRRKRAALWLYALVLLGTLVWAVWEVGFDFWQLG 81 (773)
T ss_pred HHHhccceeEEeeCCchHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhHHHhhhccccceecc
Confidence 3455789999999998 444555444 8889999999876433 233344555668999874
No 5
>PLN00061 photosystem II protein Psb27; Provisional
Probab=46.45 E-value=27 Score=31.89 Aligned_cols=63 Identities=22% Similarity=0.343 Sum_probs=42.2
Q ss_pred chhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHh-hhcCCChhhHHHHHHHHhh
Q 019569 111 YADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWI-ENAALPEENRQDLLRRLHS 186 (339)
Q Consensus 111 ~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWv-Eka~LpEe~RQ~LLrkLhs 186 (339)
...+|+...+|++.||-... |..+=+.|-+.+++|...-=-+=- =++.|||+-|..|++.|..
T Consensus 85 a~~Ake~IndYisryR~~~~-------------V~gl~SfttMqtALnsLAghYssyGpnrPLPe~lK~Rll~EL~~ 148 (150)
T PLN00061 85 ADAAKESIREYLGNWRGQKT-------------VAEEESYVELEKAIRSLASFYSKAGPSAPLPEDVKSEILDDLNK 148 (150)
T ss_pred HHHHHHHHHHHHHHhcCCcc-------------ccccchHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhc
Confidence 36789999999999985442 333344445555555443222222 4689999999999998864
No 6
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=43.77 E-value=56 Score=27.27 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHH
Q 019569 282 FLAYYVIQ-RKRTDIRRSAWRKILSVKKALVDLWQ 315 (339)
Q Consensus 282 l~~~Yvlr-RK~a~l~R~v~rq~~s~kral~D~wQ 315 (339)
++++.||- .|-+.+-|.+.+-+..+|++.-|+++
T Consensus 16 vVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~ 50 (90)
T PRK14857 16 VIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFEN 50 (90)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555665 78899999999999999999999886
No 7
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=36.61 E-value=78 Score=27.33 Aligned_cols=30 Identities=40% Similarity=0.376 Sum_probs=25.9
Q ss_pred HHH-hhchhhhHHHHHHHHHHHHHHHHHHHH
Q 019569 286 YVI-QRKRTDIRRSAWRKILSVKKALVDLWQ 315 (339)
Q Consensus 286 Yvl-rRK~a~l~R~v~rq~~s~kral~D~wQ 315 (339)
.|| -+|-+.+-|.+.+-+..+|++.-|+++
T Consensus 18 lvfGPkKLPelar~lGk~i~~fk~~~~d~k~ 48 (108)
T PRK14858 18 IVIGPQKLPDLARSLGRGLAEFKKATDDFKQ 48 (108)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 478899999999999999999999886
No 8
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=33.39 E-value=44 Score=32.65 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=38.1
Q ss_pred cccc-ccceEEEeeCchHHHHHH---HHHHHHHHhhchh-----------------hhHHHHHHHHHHHHHHH
Q 019569 259 ITLK-LGNARIVLSNKKIVLGCL---IFLAYYVIQRKRT-----------------DIRRSAWRKILSVKKAL 310 (339)
Q Consensus 259 i~lK-~Gn~~ivi~~GKi~l~~~---~l~~~YvlrRK~a-----------------~l~R~v~rq~~s~kral 310 (339)
|++| ||..+|...+=|+-+++. +++.||+|.|++. ..|.++|.-+.-+||.+
T Consensus 2 i~~~llG~~~i~~dg~~v~~~~~kkrAlla~L~l~~n~~vsRe~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l 74 (280)
T COG3629 2 IRFKLLGPLRISLDGVKVAVGAPKKRALLAYLILSRNKPVSREKLAGLLWEDSDPSRARANLRTTLHNLRKLL 74 (280)
T ss_pred ceeEecCCcEEEecCCcccccCcHHHHHHHHHHHcCCCcccHHHHHHhccCCCChhHHHHHHHHHHHHHHHhc
Confidence 5566 899999887767777776 7789999988543 34666777777777654
No 9
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=31.88 E-value=1.1e+02 Score=24.58 Aligned_cols=51 Identities=29% Similarity=0.576 Sum_probs=34.0
Q ss_pred hHHHHHHHHhhcCC-CCchhHHHHH----Hhh-h-----hHHHHHHHhhcchHHHHHHHHHhc
Q 019569 36 LGSSVLKRLRDSNN-NYNEESYDMM----ESA-G-----MVFVQSLKELGRVADILNELKLLF 87 (339)
Q Consensus 36 ~AsSVl~~lr~~~~-~~d~el~dMl----EsA-G-----MVLVQAlkeLgRt~eif~qLK~~f 87 (339)
+.-+-+++|...+. +.....++|| +.. | -+|+|||+++||. ++.+.+++.|
T Consensus 25 lse~~Id~Ie~~~~~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~-dlae~l~~~~ 86 (86)
T cd08779 25 LSYRELQRIKYNNRDDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ-DLADEVRAVL 86 (86)
T ss_pred CCHHHHHHHHHHCccCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH-HHHHHHHhhC
Confidence 44456777777763 2367788887 322 2 3899999999984 5666666543
No 10
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.20 E-value=22 Score=25.68 Aligned_cols=17 Identities=18% Similarity=0.683 Sum_probs=14.7
Q ss_pred cccccceEEEeeCchHH
Q 019569 260 TLKLGNARIVLSNKKIV 276 (339)
Q Consensus 260 ~lK~Gn~~ivi~~GKi~ 276 (339)
.+++|.+.|++-+|+++
T Consensus 12 ~i~yGsV~iiiqdG~vv 28 (38)
T PF10055_consen 12 SIRYGSVTIIIQDGRVV 28 (38)
T ss_pred cCCcceEEEEEECCEEE
Confidence 46799999999999974
No 11
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=28.42 E-value=79 Score=28.76 Aligned_cols=97 Identities=26% Similarity=0.359 Sum_probs=63.6
Q ss_pred HHHHHhhcchHHHHHHHHHhcccccccceeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeE-----E----EEec
Q 019569 67 VQSLKELGRVADILNELKLLFTSVTDIPVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKY-----Y----LVLG 137 (339)
Q Consensus 67 VQAlkeLgRt~eif~qLK~~f~SVa~IP~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~-----~----~lL~ 137 (339)
--||+++|=|+|=|...|.-|+--+-.- .=-+-|| ||. -|-+.-..- + ..|+
T Consensus 32 ~~al~~~g~tpeefir~K~eFak~T~Lg---~Ge~TCF----GSL------------VWCCKitKPCplRD~~l~ri~mS 92 (153)
T COG4008 32 HEALKELGLTPEEFIRIKEEFAKRTMLG---YGENTCF----GSL------------VWCCKITKPCPLRDGVLNRINMS 92 (153)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhccccc---cCCCccc----cee------------eeeecCCCCccccHHHHHhcCCC
Confidence 3588999999999999998886543211 0112333 221 121111000 0 1299
Q ss_pred chhhhHHhhhhhhHhhhhhhcChhhhhhHhhhcCCChhhHHHHHH
Q 019569 138 IDQYLEVVEMYAVTLLGTVLNDVDLAISWIENAALPEENRQDLLR 182 (339)
Q Consensus 138 ~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka~LpEe~RQ~LLr 182 (339)
++|||+.-+-.+=-+|+...-+++..---+++.--|||.|.-|+.
T Consensus 93 ~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~alee 137 (153)
T COG4008 93 PEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREALEE 137 (153)
T ss_pred HHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999998888888777777887666777776653
No 12
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=28.24 E-value=28 Score=32.14 Aligned_cols=32 Identities=41% Similarity=0.942 Sum_probs=25.2
Q ss_pred ccCCccccchhHHHHHHhhhccccce-eeccccc
Q 019569 229 SYLPIRENVSNQTILKVSRQTYPGFW-WFWPITL 261 (339)
Q Consensus 229 ~~~~~~~~~~~~~~~~vs~~~dp~fW-wf~~i~l 261 (339)
+|-|-+...|.|+|.-| +|-|+.|| ||-|+.|
T Consensus 69 SY~PLRQEsStqqValL-RRadsgFWgwlsPfaL 101 (173)
T PF15470_consen 69 SYCPLRQESSTQQVALL-RRADSGFWGWLSPFAL 101 (173)
T ss_pred ecccccccchhhHHHHh-hcccCCchhhhcHHHH
Confidence 47788888888888755 67899999 7777765
No 13
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=25.54 E-value=1.2e+02 Score=24.66 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.6
Q ss_pred HhhchhhhHHHHHHHHHHHHHHHHHH
Q 019569 288 IQRKRTDIRRSAWRKILSVKKALVDL 313 (339)
Q Consensus 288 lrRK~a~l~R~v~rq~~s~kral~D~ 313 (339)
-.+|-+.+-|.+.+-+..+|+++-|.
T Consensus 21 GpkKLP~l~r~~G~~i~~fKk~~~~~ 46 (94)
T COG1826 21 GPKKLPEAGRDLGKAIREFKKAASDV 46 (94)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 38899999999999999999998775
No 14
>PF07463 NUMOD4: NUMOD4 motif; InterPro: IPR010902 NUMOD4 is a putative DNA-binding motif found in homing endonucleases and related proteins [].; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1U3E_M.
Probab=24.53 E-value=15 Score=26.79 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=11.9
Q ss_pred hhhhhhhcch-hhhhhh
Q 019569 14 IWEEIDQSES-YLVCSM 29 (339)
Q Consensus 14 lWkeI~~sE~-YLVs~m 29 (339)
+|+.|+.-|- |.||.+
T Consensus 2 ~Wk~I~g~~~~Y~VSn~ 18 (51)
T PF07463_consen 2 IWKPIPGYEGKYEVSNL 18 (51)
T ss_dssp -EEE-TTSTTTEEEETT
T ss_pred cceEcCCCCCcEEEcCC
Confidence 6999999888 998864
No 15
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=24.01 E-value=28 Score=28.82 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=8.0
Q ss_pred hccccceeec
Q 019569 248 QTYPGFWWFW 257 (339)
Q Consensus 248 ~~dp~fWwf~ 257 (339)
|+||.|||--
T Consensus 1 rVeP~~WW~G 10 (88)
T PF09087_consen 1 RVEPPNWWVG 10 (88)
T ss_dssp EEESSEEETT
T ss_pred CCCCCchhcC
Confidence 5899999953
No 16
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=68 Score=25.17 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhchhhh
Q 019569 275 IVLGCLIFLAYYVIQRKRTDI 295 (339)
Q Consensus 275 i~l~~~~l~~~YvlrRK~a~l 295 (339)
.|++|++..++|++|++++.-
T Consensus 17 ~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 17 AFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHhcccchhh
Confidence 566777777999999886543
No 17
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.51 E-value=2e+02 Score=30.55 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=70.7
Q ss_pred chhHHHHHH--hhhhHHHHHHHhhcchHHHHHHHHHhcccccccceeeeeechhhhhcCCCchhHHHHHHHHhccceeec
Q 019569 52 NEESYDMME--SAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVD 129 (339)
Q Consensus 52 d~el~dMlE--sAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d 129 (339)
.+|+.|||+ .-+..=++.++|=.|++.+||.|..+-.|+.+. +|.-++
T Consensus 104 s~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~al------------------------------gWVav~ 153 (480)
T KOG2675|consen 104 SNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPAL------------------------------GWVAVK 153 (480)
T ss_pred hHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccc------------------------------eeEecC
Confidence 678888887 456677899999999999999999987665432 455332
Q ss_pred CeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc-CCChhhHHHHHHHHhh
Q 019569 130 GKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA-ALPEENRQDLLRRLHS 186 (339)
Q Consensus 130 ~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka-~LpEe~RQ~LLrkLhs 186 (339)
-.-. ==+.|+-+-++.|+=.+|-.--+--+..+.||..- +|-.| -|.-.|.-|.
T Consensus 154 ~tP~--p~vke~~daa~FY~NrvLkEyk~~D~~hveWvKa~l~l~~e-L~~YVk~hht 208 (480)
T KOG2675|consen 154 PTPA--PYVKEFKDAAQFYTNRVLKEYKEKDPRHVEWVKAYLALFLE-LQAYVKEHHT 208 (480)
T ss_pred CCCc--hHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHH-HHHHHHHhcc
Confidence 1000 11467778899999999998887778899999863 22222 4555555553
No 18
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.88 E-value=70 Score=26.94 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 019569 283 LAYYVIQRK 291 (339)
Q Consensus 283 ~~~YvlrRK 291 (339)
|.++.++||
T Consensus 17 ~~~~~~~rR 25 (130)
T PF12273_consen 17 FLFYCHNRR 25 (130)
T ss_pred HHHHHHHHH
Confidence 344444333
No 19
>PHA02085 hypothetical protein
Probab=22.85 E-value=30 Score=28.97 Aligned_cols=18 Identities=39% Similarity=0.781 Sum_probs=15.4
Q ss_pred cCeEEEEecchhhhHHhh
Q 019569 129 DGKYYLVLGIDQYLEVVE 146 (339)
Q Consensus 129 d~q~~~lL~~~~Y~eVvE 146 (339)
+|..+|++++-+|+||+|
T Consensus 70 ~d~awvf~gER~yFeI~e 87 (87)
T PHA02085 70 DDTAWVLFGERQYFEIVE 87 (87)
T ss_pred CceeEEEEecceeEEecC
Confidence 556688899999999987
No 20
>PF15265 FAM196: FAM196 family
Probab=22.73 E-value=62 Score=34.42 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHhhhhc
Q 019569 174 EENRQDLLRRLHSLYS 189 (339)
Q Consensus 174 Ee~RQ~LLrkLhsl~s 189 (339)
|.+=|.+|++||-.-.
T Consensus 463 E~r~~~vl~~L~~~e~ 478 (514)
T PF15265_consen 463 EGRFQPVLKRLDPAEE 478 (514)
T ss_pred HhHHHHHHHhcccccC
Confidence 6667889999985433
No 21
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=21.79 E-value=63 Score=29.92 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcccc-------cccceeeeeechhh---hhcCCCchhHHHHHHHHhccc
Q 019569 77 ADILNELKLLFTSV-------TDIPVQVLLTGVCL---EISEGSYADVREFLEEFLSKW 125 (339)
Q Consensus 77 ~eif~qLK~~f~SV-------a~IP~~vlLtGac~---QiaeGS~~~vr~~leEfL~~W 125 (339)
..++..|+.+|.+. ..|.+.-|+..... +...+.-.|++|||.-+|+..
T Consensus 21 ~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd~l 79 (300)
T cd02663 21 ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEI 79 (300)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHH
Confidence 44555555555433 33444444443321 245567799999999888765
No 22
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=21.71 E-value=1.6e+02 Score=23.72 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=25.3
Q ss_pred HHHHHHh-hchhhhHHHHHHHHHHHHHHHHHHHH
Q 019569 283 LAYYVIQ-RKRTDIRRSAWRKILSVKKALVDLWQ 315 (339)
Q Consensus 283 ~~~Yvlr-RK~a~l~R~v~rq~~s~kral~D~wQ 315 (339)
+++.+|- .|-+.+-|.+.+-+..+|+++-|+.+
T Consensus 14 vallv~GP~kLP~~~r~~G~~i~~~r~~~~~~~~ 47 (80)
T TIGR01410 14 VALVVLGPERLPVAIRAVGKFVRRLRGMASDVKN 47 (80)
T ss_pred HHHheECchHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 3444554 77788889999999999988888764
No 23
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.16 E-value=79 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=31.8
Q ss_pred hhhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCC-chhHHHHHHhhhh
Q 019569 16 EEIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNY-NEESYDMMESAGM 64 (339)
Q Consensus 16 keI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~-d~el~dMlEsAGM 64 (339)
.....++.|+..|-||+|...-..|+++=++-..+. ...+.++++.-|.
T Consensus 24 ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 24 ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 456789999999999999999999998765554111 3334444444443
No 24
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=21.01 E-value=74 Score=27.45 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=12.9
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHH
Q 019569 284 AYYVIQRKRTDIRRSAWRKILSVKK 308 (339)
Q Consensus 284 ~~YvlrRK~a~l~R~v~rq~~s~kr 308 (339)
+||++-|.+.-=.+--.+..+++|+
T Consensus 15 i~yf~iRPQkKr~Ke~~em~~sLk~ 39 (113)
T PRK06531 15 LIFFMQRQQKKQAQERQNQLNAIQK 39 (113)
T ss_pred HHHheechHHHHHHHHHHHHHhcCC
Confidence 5666666554333334444555554
No 25
>PF01231 IDO: Indoleamine 2,3-dioxygenase; InterPro: IPR000898 Indoleamine 2,3-dioxgyenase (IDO, 1.13.11.42 from EC) [] is a cytosolic haem protein which, together with the hepatic enzyme tryptophan 2,3-dioxygenase, catalyzes the conversion of tryptophan and other indole derivatives to kynurenines. The physiological role of IDO is not fully understood but is of great interest, because IDO is widely distributed in human tissues, can be up-regulated via cytokines such as interferon-gamma, and can thereby modulate the levels of tryptophan, which is vital for cell growth. The degradative action of IDO on tryptophan leads to cell death by starvation of this essential and relatively scarce amino acid. IDO is a haem-containing enzyme of about 400 amino acids. Site-directed mutagenesis showed His346 (P14902 from SWISSPROT) to be essential for haem binding, indicating that this histidine residue may be the proximal ligand. Mutation of Asp274 also compromised the ability of IDO to bind haem, suggesting that Asp274 may coordinate to haem directly as the distal ligand or is essential in maintaining the conformation of the haem pocket []. Other proteins that are evolutionarily related to IDO include yeast hypothetical protein YJR078w; and myoglobin from the red muscle of the archaeogastropodic molluscs, Nordotis madaka (Giant abalone) and Sulculus diversicolor [, ]. These unusual globins lack enzymatic activity but have kept the haem group.; GO: 0020037 heme binding; PDB: 2D0U_A 2D0T_A.
Probab=20.48 E-value=4.1e+02 Score=27.09 Aligned_cols=112 Identities=16% Similarity=0.202 Sum_probs=57.7
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcC-CCCchhHHHHHHhhhhHHHHHHHhhcchHH------HHHHHHHhccccc
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSN-NNYNEESYDMMESAGMVFVQSLKELGRVAD------ILNELKLLFTSVT 91 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~-~~~d~el~dMlEsAGMVLVQAlkeLgRt~e------if~qLK~~f~SVa 91 (339)
|++-=|||+...|-+..-+.....+...+- .+..+.+.+-|+....++-+--+-|.|..| +++.++-.+.+-+
T Consensus 154 dE~wF~lvsv~iE~~g~~~l~~~~~a~~a~~~~d~~~i~~~L~~i~~~i~~i~~~l~rm~e~~dp~~FY~~iRpfl~G~~ 233 (422)
T PF01231_consen 154 DEEWFYLVSVEIEARGAPALPAMLSALDAVKAGDSDRITEALRRIAEAIERITALLERMYERCDPHVFYHRIRPFLAGWK 233 (422)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHTHHHHT--BS
T ss_pred hhhhHHHhHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhheehhhhhhhccC
Confidence 445569999999876554443333332222 223345556666555555554444455433 4678888888888
Q ss_pred c-----cceeeee---echhhhhcCCCc--hhHHHHHHHHhccceeecC
Q 019569 92 D-----IPVQVLL---TGVCLEISEGSY--ADVREFLEEFLSKWSCVDG 130 (339)
Q Consensus 92 ~-----IP~~vlL---tGac~QiaeGS~--~~vr~~leEfL~~W~~~d~ 130 (339)
. .|--|+. .|-=.+.++||. +.+=++|+.||+-=....+
T Consensus 234 ~~~~~glp~Gv~yeg~~~~~~~~~G~S~aQSsli~~lD~~LGV~H~~~~ 282 (422)
T PF01231_consen 234 NMPAAGLPNGVIYEGVSGEPRKYSGGSAAQSSLIQALDAFLGVDHSPTG 282 (422)
T ss_dssp S-GG--GTT-BEETTT-SS-B-B----GGG-HHHHHHHHHTT--TT-SS
T ss_pred CCccccCCCCeeeeCCCCCcCcccCcCcccccHHHHHHHHhCCCCCCCC
Confidence 7 5545544 333456666666 7888999999986665554
No 26
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=20.27 E-value=2e+02 Score=21.13 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.6
Q ss_pred HhhchhhhHHHHHHHHHHHHHHHHHH
Q 019569 288 IQRKRTDIRRSAWRKILSVKKALVDL 313 (339)
Q Consensus 288 lrRK~a~l~R~v~rq~~s~kral~D~ 313 (339)
=-.|-+.+-|.+.+-+..+|++.-|.
T Consensus 19 Gp~kLP~~~r~lG~~i~~fk~~~~~~ 44 (47)
T TIGR01411 19 GAKKLPELGRDLGKAIKEFKKALKEE 44 (47)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhhcc
Confidence 34888999999999999999998774
Done!