Query 019569
Match_columns 339
No_of_seqs 18 out of 20
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hym_B Cell division cycle pro 60.2 47 0.0016 26.7 8.3 95 18-124 26-120 (330)
2 3ro3_A PINS homolog, G-protein 57.8 45 0.0015 23.3 7.6 140 16-170 11-155 (164)
3 3gw4_A Uncharacterized protein 53.9 65 0.0022 24.1 7.8 140 16-170 28-173 (203)
4 3nf1_A KLC 1, kinesin light ch 52.5 48 0.0017 26.4 7.1 140 17-170 30-179 (311)
5 3ro2_A PINS homolog, G-protein 39.0 1.3E+02 0.0043 23.8 7.5 136 20-170 189-329 (338)
6 3hym_B Cell division cycle pro 38.1 81 0.0028 25.3 6.4 133 19-170 130-262 (330)
7 2xev_A YBGF; tetratricopeptide 38.1 71 0.0024 22.3 5.4 98 18-125 6-106 (129)
8 4b4t_Q 26S proteasome regulato 33.7 94 0.0032 26.6 6.4 109 19-130 140-251 (434)
9 3ro2_A PINS homolog, G-protein 31.6 1.9E+02 0.0065 22.7 7.8 58 104-170 192-249 (338)
10 2o71_A Death domain-containing 30.5 51 0.0018 26.6 4.1 49 36-84 47-105 (115)
11 2of5_A Death domain-containing 29.9 52 0.0018 26.5 4.0 50 36-85 47-106 (114)
12 3u4t_A TPR repeat-containing p 28.0 2.1E+02 0.0073 22.4 7.2 126 18-172 7-136 (272)
13 3nf1_A KLC 1, kinesin light ch 27.0 1.2E+02 0.004 24.1 5.6 141 18-170 73-221 (311)
14 1is8_A GTP cyclohydrolase I; e 25.6 53 0.0018 30.3 3.7 47 262-309 128-176 (230)
15 2fo7_A Synthetic consensus TPR 25.4 1.5E+02 0.0053 19.7 7.1 124 19-170 6-129 (136)
16 3cv0_A Peroxisome targeting si 25.0 2.6E+02 0.0089 22.2 7.4 26 18-43 25-50 (327)
17 1wur_A GTP cyclohydrolase I; b 25.0 55 0.0019 30.0 3.7 50 259-309 112-163 (220)
18 2q7f_A YRRB protein; TPR, prot 23.4 2.4E+02 0.0083 21.4 6.6 24 19-42 62-85 (243)
19 3ieg_A DNAJ homolog subfamily 22.5 1.8E+02 0.0063 23.3 6.0 98 17-123 237-334 (359)
20 3edt_B KLC 2, kinesin light ch 22.3 2.3E+02 0.0078 21.8 6.3 140 19-170 48-195 (283)
21 2q7f_A YRRB protein; TPR, prot 21.4 90 0.0031 23.9 3.8 129 14-170 23-151 (243)
22 2re1_A Aspartokinase, alpha an 20.9 68 0.0023 26.3 3.1 57 71-127 35-94 (167)
23 1a8r_A GTP cyclohydrolase I; p 20.4 83 0.0028 28.7 3.8 49 261-310 116-166 (221)
24 3sf4_A G-protein-signaling mod 20.3 3.7E+02 0.013 22.2 8.1 138 19-171 192-334 (406)
No 1
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=60.18 E-value=47 Score=26.67 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=56.6
Q ss_pred hhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhcccccccceee
Q 019569 18 IDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQV 97 (339)
Q Consensus 18 I~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~v 97 (339)
+..++.|+-.|.|++|......+++.-.... +.+. .+..++-++|+..+-+..++.....-..-|...
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--------~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHA--------SCLP----VHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--------TTHH----HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh--------hhHH----HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH
Confidence 5678889999999999998888876422221 1111 233445566776666655555443333334444
Q ss_pred eeechhhhhcCCCchhHHHHHHHHhcc
Q 019569 98 LLTGVCLEISEGSYADVREFLEEFLSK 124 (339)
Q Consensus 98 lLtGac~QiaeGS~~~vr~~leEfL~~ 124 (339)
...|.|+...+..+..+.+.++.-+..
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~ 120 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTL 120 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 445555444333777777777776653
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=57.75 E-value=45 Score=23.25 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=74.7
Q ss_pred hhhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHH---HHHHHHHhcccccc
Q 019569 16 EEIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVAD---ILNELKLLFTSVTD 92 (339)
Q Consensus 16 keI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~e---if~qLK~~f~SVa~ 92 (339)
-....+..|...+.|++|.......++...... .....-..+-..|.+. ..+|+..+ .+.+...++.....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAY----IFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 345667889999999999999888887776544 2222222333334333 33444433 33333333333222
Q ss_pred cce--eeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 93 IPV--QVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 93 IP~--~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
.|. .+...=+......|.+..+.+.+++-+....-.++.. ....-|..+.+ +-...+|.+.|+.+.+++
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~------~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI---GEGRACWSLGN------AYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHH------HHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH---hHHHHHHHHHH------HHHHccCHHHHHHHHHHH
Confidence 221 1122223334567888888888888776544222110 00112222222 223468889999888775
No 3
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=53.91 E-value=65 Score=24.14 Aligned_cols=140 Identities=16% Similarity=0.097 Sum_probs=77.3
Q ss_pred hhhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchH---HHHHHHHHhcccccc
Q 019569 16 EEIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVA---DILNELKLLFTSVTD 92 (339)
Q Consensus 16 keI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~---eif~qLK~~f~SVa~ 92 (339)
-....+..|...|.|++|.......++..+... .+...-..+-.-|++ +...|+.. +.+.+.-.++.....
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~al~~~~~~~~ 101 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGMV----ERMAGNWDAARRCFLEERELLASLPE 101 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence 344567788899999999999888888776554 322333333333443 34445444 344444445433331
Q ss_pred cc---eeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhh
Q 019569 93 IP---VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIEN 169 (339)
Q Consensus 93 IP---~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEk 169 (339)
-| ..+...=+......|.+..+...+++-+....-.++ .+....=++....+..-.+|.+.|+.+.++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD---------QVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 12 111222233445578888888888887765432111 111111122223333346899999988887
Q ss_pred c
Q 019569 170 A 170 (339)
Q Consensus 170 a 170 (339)
+
T Consensus 173 a 173 (203)
T 3gw4_A 173 A 173 (203)
T ss_dssp H
T ss_pred H
Confidence 6
No 4
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=52.52 E-value=48 Score=26.35 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=75.7
Q ss_pred hhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHH---HHHHHHHhcccc---
Q 019569 17 EIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVAD---ILNELKLLFTSV--- 90 (339)
Q Consensus 17 eI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~e---if~qLK~~f~SV--- 90 (339)
-...+..|.-.|.|++|.......++.........+...-+.+...|.++. .+|+..+ .+.+.-.++...
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999988888876654431123344455555555443 3444433 333333333211
Q ss_pred --cccceeeeeechhhhhcCCCchhHHHHHHHHhccceee--cCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhH
Q 019569 91 --TDIPVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCV--DGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISW 166 (339)
Q Consensus 91 --a~IP~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~--d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSW 166 (339)
...+. +...=+......|.+..+...+++-+....-. .+. .....-|..+.. +-.-.++.+.|+.+
T Consensus 106 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~------~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 106 DHPAVAA-TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLAL------LCQNQGKYEEVEYY 175 (311)
T ss_dssp TCHHHHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHH------HHHTTTCHHHHHHH
T ss_pred CChHHHH-HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHH------HHHHcCCHHHHHHH
Confidence 11122 22222333456788888888888887654211 000 001111222222 22346888999998
Q ss_pred hhhc
Q 019569 167 IENA 170 (339)
Q Consensus 167 vEka 170 (339)
.+++
T Consensus 176 ~~~a 179 (311)
T 3nf1_A 176 YQRA 179 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 5
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=39.04 E-value=1.3e+02 Score=23.79 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred hcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHH---HHHHHHhcccccccc--
Q 019569 20 QSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADI---LNELKLLFTSVTDIP-- 94 (339)
Q Consensus 20 ~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~ei---f~qLK~~f~SVa~IP-- 94 (339)
.+..|+-.+.|++|.......++...... .....-..+-.-|.+ +...|+..+- +.+...++.....-|
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNA----YIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH----HHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 45667778888888887777766555433 222222233333333 3344554433 333333333322211
Q ss_pred eeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 95 VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 95 ~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
..++..=+......|.+..+.+.+++-+....-..+.. ....-|..+.++| ...+|.+.|+.+.+++
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~------~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI---GEGRACWSLGNAY------TALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH------HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHH------HHcCChHHHHHHHHHH
Confidence 11222223334567888888888888776544222110 0111223333332 3478899999888875
No 6
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=38.10 E-value=81 Score=25.28 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=65.1
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhcccccccceeee
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQVL 98 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~vl 98 (339)
..+..|.-.+.|++|.......++.-.... +..- .+...+...|+..+-...++.....-..-|.-..
T Consensus 130 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~----~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 197 (330)
T 3hym_B 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCH--------LPML----YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 197 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCS--------HHHH----HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhccccH--------HHHH----HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHH
Confidence 345566666667766665555544322211 1111 1344455566665555555544433333332223
Q ss_pred eechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 99 LTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 99 LtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
.-|. .....|.+..+...+++-+....-..+.....-..+-|..+..+| .-.++.+.|+.+.+++
T Consensus 198 ~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 198 EVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC------RKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHH-HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH------HHTTCHHHHHHHHHHH
T ss_pred HHHH-HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH------HHhcCHHHHHHHHHHH
Confidence 3333 334567888888888887765432221110001122333333333 2367778888777765
No 7
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=38.05 E-value=71 Score=22.26 Aligned_cols=98 Identities=14% Similarity=0.162 Sum_probs=59.1
Q ss_pred hhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHH---HHHHHHhcccccccc
Q 019569 18 IDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADI---LNELKLLFTSVTDIP 94 (339)
Q Consensus 18 I~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~ei---f~qLK~~f~SVa~IP 94 (339)
...+..|+-.+.|++|...-..+++.-... ....+.+-..| +++-+.|+..+- |...-..+..-...|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~~~lg----~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNG-----VYTPNALYWLG----ESYYATRNFQLAEAQFRDLVSRYPTHDKAA 76 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-----TTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----cccHHHHHHHH----HHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence 456788899999999998877776642211 11112232333 444556666554 444444444333334
Q ss_pred eeeeeechhhhhcCCCchhHHHHHHHHhccc
Q 019569 95 VQVLLTGVCLEISEGSYADVREFLEEFLSKW 125 (339)
Q Consensus 95 ~~vlLtGac~QiaeGS~~~vr~~leEfL~~W 125 (339)
--.+..|.|+ ...|.+..+...+++.+...
T Consensus 77 ~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 77 GGLLKLGLSQ-YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHC
Confidence 4455666665 46788888888888887653
No 8
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.70 E-value=94 Score=26.63 Aligned_cols=109 Identities=12% Similarity=0.138 Sum_probs=68.9
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhcccccccc---e
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIP---V 95 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP---~ 95 (339)
..+.-|.-.|.|++|...-..++....... .+.+..+..-.-|.+ -.+++...|.-+++.+-.....++..-| .
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLD--DKPSLVDVHLLESKV-YHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--CSTHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 457888899999999988877776665544 333444443333322 2244444556666666666655544322 2
Q ss_pred eeeeechhhhhcCCCchhHHHHHHHHhccceeecC
Q 019569 96 QVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDG 130 (339)
Q Consensus 96 ~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~ 130 (339)
.+..-+..+.+.+|.+..+...+.+.+..+.-.++
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~ 251 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTT 251 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Confidence 34455566778999999998888888877664443
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=31.58 E-value=1.9e+02 Score=22.75 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=32.1
Q ss_pred hhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 104 LEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 104 ~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
.....|.+..+...+++-+....-..+.. .....|..+..+ -.-.++.+.|+.+.+++
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKA---AERRAYSNLGNA------YIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Confidence 34456888888888887775443211110 001122222222 23468889999888876
No 10
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.50 E-value=51 Score=26.63 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=35.3
Q ss_pred hHHHHHHHHhhcCC-CCchhHHHHHH---------hhhhHHHHHHHhhcchHHHHHHHH
Q 019569 36 LGSSVLKRLRDSNN-NYNEESYDMME---------SAGMVFVQSLKELGRVADILNELK 84 (339)
Q Consensus 36 ~AsSVl~~lr~~~~-~~d~el~dMlE---------sAGMVLVQAlkeLgRt~eif~qLK 84 (339)
+...-++.|+..+. +..+..++||. +.-..|+|||+.++|....+..+.
T Consensus 47 lse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~~~ 105 (115)
T 2o71_A 47 LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHML 105 (115)
T ss_dssp CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHHHT
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33445666666552 33567788875 555899999999999999888764
No 11
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.92 E-value=52 Score=26.55 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhcCC-CCchhHHHHHH---------hhhhHHHHHHHhhcchHHHHHHHHH
Q 019569 36 LGSSVLKRLRDSNN-NYNEESYDMME---------SAGMVFVQSLKELGRVADILNELKL 85 (339)
Q Consensus 36 ~AsSVl~~lr~~~~-~~d~el~dMlE---------sAGMVLVQAlkeLgRt~eif~qLK~ 85 (339)
+...-++.|+..+. +..+..++||. +.-..|+|||+.+++....+..+..
T Consensus 47 lse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~~~~ 106 (114)
T 2of5_A 47 LSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHMLE 106 (114)
T ss_dssp CCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHHHCC
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33445666766552 33567788875 4558999999999999999987753
No 12
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=28.04 E-value=2.1e+02 Score=22.37 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=77.0
Q ss_pred hhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhccccccccee-
Q 019569 18 IDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQ- 96 (339)
Q Consensus 18 I~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~- 96 (339)
+..++.|+-.+.|++|......+++.-.... +.+-. +..++.++|+..+-...++.... ...-|..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--------~~~~~----l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~ 73 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSP--------YIYNR----RAVCYYELAKYDLAQKDIETYFS-KVNATKAK 73 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS--------TTHHH----HHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--------HHHHH----HHHHHHHHhhHHHHHHHHHHHHh-ccCchhHH
Confidence 4678899999999999998888775421111 12222 23355667777776666666554 2122222
Q ss_pred ---eeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhcCC
Q 019569 97 ---VLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENAAL 172 (339)
Q Consensus 97 ---vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka~L 172 (339)
....|.|+ ...|.+..+...++.-+..-. + ..+-|..+..+| .-.+|.+.|+.+.+++--
T Consensus 74 ~~~~~~lg~~~-~~~~~~~~A~~~~~~a~~~~~---~------~~~~~~~l~~~~------~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 74 SADFEYYGKIL-MKKGQDSLAIQQYQAAVDRDT---T------RLDMYGQIGSYF------YNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHST---T------CTHHHHHHHHHH------HHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCc---c------cHHHHHHHHHHH------HHccCHHHHHHHHHHHhh
Confidence 23445444 556888888888887776321 1 224455555544 347899999999988753
No 13
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=27.02 E-value=1.2e+02 Score=24.07 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=72.8
Q ss_pred hhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHH---HHHHHHhcccc----
Q 019569 18 IDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADI---LNELKLLFTSV---- 90 (339)
Q Consensus 18 I~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~ei---f~qLK~~f~SV---- 90 (339)
...+..|.-.+.|++|.......++..+......+....+.+-.-|. .+..+|+..+- |.+.-.++...
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV----LYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----HHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 44677888889999999887777766544311122333344433333 34444444333 33333332111
Q ss_pred -cccceeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhh
Q 019569 91 -TDIPVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIEN 169 (339)
Q Consensus 91 -a~IP~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEk 169 (339)
...+ .++..=+......|.+..+.+.+++-+....-..+.. -.....-|..+..+| .-.++.+.|+.+.++
T Consensus 149 ~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~------~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 149 HPDVA-KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-DPNVAKTKNNLASCY------LKQGKFKQAETLYKE 220 (311)
T ss_dssp CHHHH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-CHHHHHHHHHHHHHH------HHHTCHHHHHHHHHH
T ss_pred ChHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH------HHcCCHHHHHHHHHH
Confidence 1111 1222223445677888888888888776533110000 000112233333333 347899999999987
Q ss_pred c
Q 019569 170 A 170 (339)
Q Consensus 170 a 170 (339)
+
T Consensus 221 a 221 (311)
T 3nf1_A 221 I 221 (311)
T ss_dssp H
T ss_pred H
Confidence 6
No 14
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=25.60 E-value=53 Score=30.26 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=33.3
Q ss_pred cccceEE-EeeCchHHHHHHHHH-HHHHHhhchhhhHHHHHHHHHHHHHH
Q 019569 262 KLGNARI-VLSNKKIVLGCLIFL-AYYVIQRKRTDIRRSAWRKILSVKKA 309 (339)
Q Consensus 262 K~Gn~~i-vi~~GKi~l~~~~l~-~~YvlrRK~a~l~R~v~rq~~s~kra 309 (339)
=+|++|| +||+||+ +|++=|- +.=+|.|+--.=.|...|-+.++.++
T Consensus 128 f~GkahVaYiP~gkV-iGLSKlaRiVd~farRlQvQERLT~qIAdaL~~~ 176 (230)
T 1is8_A 128 FVGRVHIGYLPNKQV-LGLSKLARIVEIYSRRLQVQERLTKQIAVAITEA 176 (230)
T ss_dssp EEEEEEEEEECSEEC-CCHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEEcCCCee-ccHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence 4899999 5999985 6777444 66666666666677777766666554
No 15
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=25.36 E-value=1.5e+02 Score=19.69 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=66.5
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhcccccccceeee
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQVL 98 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~vl 98 (339)
..+..|.-.+.|++|.......++.- . .+. +..- .+.+.+.+.|+..+-...++.....-...|...+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~--~~~---~~~~----~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD---P--RSA---EAWY----NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---T--TCH---HHHH----HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC---C--cch---hHHH----HHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 34677888999999988777666531 1 111 1221 2334444555555544444333221112222122
Q ss_pred eechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 99 LTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 99 LtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
..|. .....|.+..+...+++.+..-. + ..+-|..+..+|. -.+|.+.|+.+.+++
T Consensus 74 ~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~-------~~~~~~~la~~~~------~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 74 NLGN-AYYKQGDYDEAIEYYQKALELDP--R-------SAEAWYNLGNAYY------KQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHH-HHHTTTCHHHHHHHHHHHHHHCT--T-------CHHHHHHHHHHHH------TTTCHHHHHHHHHHH
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHHhCC--C-------ChHHHHHHHHHHH------HHccHHHHHHHHHHH
Confidence 2233 34567888888888888776321 0 1233444444442 367888898888764
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=25.04 E-value=2.6e+02 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=20.2
Q ss_pred hhhcchhhhhhhHHHHHHhHHHHHHH
Q 019569 18 IDQSESYLVCSMYEEAASLGSSVLKR 43 (339)
Q Consensus 18 I~~sE~YLVs~myeeAas~AsSVl~~ 43 (339)
+..+..|+-.+.|++|...-..+++.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~ 50 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQA 50 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56778888888888888877777664
No 17
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=25.04 E-value=55 Score=29.96 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=34.6
Q ss_pred ccccccceEE-EeeCchHHHHHHHHH-HHHHHhhchhhhHHHHHHHHHHHHHH
Q 019569 259 ITLKLGNARI-VLSNKKIVLGCLIFL-AYYVIQRKRTDIRRSAWRKILSVKKA 309 (339)
Q Consensus 259 i~lK~Gn~~i-vi~~GKi~l~~~~l~-~~YvlrRK~a~l~R~v~rq~~s~kra 309 (339)
+--=+|++|| +||+||+ +|++=|- +.=+|.|+--.=.|...|-+.++.++
T Consensus 112 llPf~G~ahVaYiP~~kV-vGLSKlaRiV~~farRlQvQERLT~qIAdal~~~ 163 (220)
T 1wur_A 112 LLPFFGKVHIGYIPDGKI-LGLSKFARIVDMFARRLQVQERLAVQIAEAIQEV 163 (220)
T ss_dssp CCEEEEEEEEEEECSSEE-ECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEeCCCee-ecHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh
Confidence 3334899999 5999886 5667444 66667777667777777766666554
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=23.40 E-value=2.4e+02 Score=21.45 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=14.2
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHH
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLK 42 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~ 42 (339)
..+..|.-.+.|++|......+++
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666665555544
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=22.54 E-value=1.8e+02 Score=23.34 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=56.6
Q ss_pred hhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhccccccccee
Q 019569 17 EIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQ 96 (339)
Q Consensus 17 eI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~ 96 (339)
.+..++.|.-.+.|++|......+++.-.. +. +..-.+-+.+..++.++|+..+-+..++....--..-|..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-----VA---EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-----SH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ch---HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHH
Confidence 446688899999999999887777664211 11 1222223345566667777766666665554322222333
Q ss_pred eeeechhhhhcCCCchhHHHHHHHHhc
Q 019569 97 VLLTGVCLEISEGSYADVREFLEEFLS 123 (339)
Q Consensus 97 vlLtGac~QiaeGS~~~vr~~leEfL~ 123 (339)
...-|.|+ ...|.+..+.+.+++-+.
T Consensus 309 ~~~~~~~~-~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 309 LKDRAEAY-LIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHh
Confidence 33334433 456777777777776664
No 20
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=22.31 E-value=2.3e+02 Score=21.84 Aligned_cols=140 Identities=12% Similarity=0.034 Sum_probs=70.3
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHH---HHHHHHhcccc-----
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADI---LNELKLLFTSV----- 90 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~ei---f~qLK~~f~SV----- 90 (339)
..+..|.-.+.|++|......+++..+......+...-+.+-.-|.++. ..|+..+- |.+.-.++...
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG----KRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4567788889999998888877766544321123344455555555443 33333332 22222222111
Q ss_pred cccceeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 91 TDIPVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 91 a~IP~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
...+ .....=+......|.+..+.+.+++-+....-..+.. -.....-|..+..+ -...++.+.|+...+++
T Consensus 124 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 124 PDVA-KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD-DPNVAKTKNNLASC------YLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Confidence 1111 1122222334567888888888888887643110000 00011222222222 23468888888887765
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=21.41 E-value=90 Score=23.93 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=58.0
Q ss_pred hhhhhhhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHHhccccccc
Q 019569 14 IWEEIDQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKLLFTSVTDI 93 (339)
Q Consensus 14 lWkeI~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~I 93 (339)
-+.-+..+..|+-.+.|++|.......++. . .+ -.+.+-..| ..+...|+..+-...++.....-..-
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~--~~--~~~~~~~la----~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----N--KE--DAIPYINFA----NLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp -------------------CCTTHHHHHTT----C--TT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----C--cc--cHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 355577889999999999998877766651 1 11 123333333 34445566555554444433222222
Q ss_pred ceeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 94 PVQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 94 P~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
|......|.| ....|.+..+.+.+++.+..-. + ..+.|..+..+| ...+|.+.|+...+++
T Consensus 91 ~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~~~--~-------~~~~~~~~a~~~------~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 91 ATAYYGAGNV-YVVKEMYKEAKDMFEKALRAGM--E-------NGDLFYMLGTVL------VKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTC--C-------SHHHHHHHHHHH------HHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCC--C-------CHHHHHHHHHHH------HHhccHHHHHHHHHHH
Confidence 2222223333 3467888888888888876432 0 123344444443 2478999999888875
No 22
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=20.92 E-value=68 Score=26.29 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred HhhcchHHHHHHHHHhcccccccceeee---eechhhhhcCCCchhHHHHHHHHhcccee
Q 019569 71 KELGRVADILNELKLLFTSVTDIPVQVL---LTGVCLEISEGSYADVREFLEEFLSKWSC 127 (339)
Q Consensus 71 keLgRt~eif~qLK~~f~SVa~IP~~vl---LtGac~QiaeGS~~~vr~~leEfL~~W~~ 127 (339)
++-|+..++|..|...-.+|..|+.... .+.++|=+.......+++.|+++...+.+
T Consensus 35 ~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~ 94 (167)
T 2re1_A 35 DKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGA 94 (167)
T ss_dssp CCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHHHSSTTTTC
T ss_pred CCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHHHHHHHcCC
Confidence 3458889999999999999999998765 44588888887777789999998665543
No 23
>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} SCOP: d.96.1.1 PDB: 1n3r_A* 1fbx_A 1gtp_A 1n3s_A* 1n3t_F* 1a9c_A* 4du6_A*
Probab=20.35 E-value=83 Score=28.69 Aligned_cols=49 Identities=10% Similarity=0.164 Sum_probs=35.7
Q ss_pred ccccceEEE-eeCchHHHHHHHHH-HHHHHhhchhhhHHHHHHHHHHHHHHH
Q 019569 261 LKLGNARIV-LSNKKIVLGCLIFL-AYYVIQRKRTDIRRSAWRKILSVKKAL 310 (339)
Q Consensus 261 lK~Gn~~iv-i~~GKi~l~~~~l~-~~YvlrRK~a~l~R~v~rq~~s~kral 310 (339)
-=+|++||. ||+||+ +|++-|- +.-+|.|+--.=.|...|=+.++.+++
T Consensus 116 Pf~G~~hVaYiP~~~V-vGLSKlaRiv~~farRlQvQErlT~qIadal~~~l 166 (221)
T 1a8r_A 116 TIDGKATVAYIPKDSV-IGLSKINRIVQFFAQRPQVQERLTQQILIALQTLL 166 (221)
T ss_dssp EEEEEEEEEECCSSEE-ECHHHHHHHHHHHHSSEECHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEecCCcc-ccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHh
Confidence 338999996 899985 5667444 777778877777787777776665543
No 24
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=20.26 E-value=3.7e+02 Score=22.18 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=70.6
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHH---HHHHHhcccccccc-
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADIL---NELKLLFTSVTDIP- 94 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif---~qLK~~f~SVa~IP- 94 (339)
..+..|.-.+.|++|.......++...... .....-..+..-|.+ +..+|+..+-. .+...++.....-+
T Consensus 192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNA----YIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHH----HHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 446777788889998887777776655433 222222333333433 34445444333 33333332222111
Q ss_pred -eeeeeechhhhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhcC
Q 019569 95 -VQVLLTGVCLEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENAA 171 (339)
Q Consensus 95 -~~vlLtGac~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka~ 171 (339)
..++..=+......|.+..+.+.+++-+..-.-..+.. ....-|..+.++| ...+|.+.|+.+.+++-
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~la~~~------~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI---GEGRACWSLGNAY------TALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH------HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHH------HHcCCHHHHHHHHHHHH
Confidence 11122222333567888888888888776433211100 0011222222222 34789999999988863
Done!