Query 019569
Match_columns 339
No_of_seqs 18 out of 20
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 03:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1s0pa_ a.192.1.1 (A:) N-termi 52.6 9.7 0.00071 31.5 5.4 110 26-168 30-142 (176)
2 d3cx5d2 f.23.11.1 (D:261-307) 42.9 8.1 0.00059 26.3 2.8 23 274-296 12-36 (47)
3 d1ppjd2 f.23.11.1 (D:196-241) 38.8 10 0.00073 25.5 2.7 16 281-296 21-36 (46)
4 d1h3ga1 b.1.18.2 (A:3-95) Cycl 24.5 7.7 0.00056 29.1 0.1 10 247-256 5-14 (93)
5 d1vf5c3 f.23.23.1 (C:250-286) 23.3 27 0.0019 22.8 2.6 20 273-292 8-29 (37)
6 d1r8ja1 a.186.1.1 (A:177-282) 22.9 18 0.0013 28.2 2.1 20 171-190 5-24 (106)
7 d1q90a3 f.23.23.1 (A:248-292) 21.0 26 0.0019 23.7 2.2 20 273-292 7-28 (45)
8 d1tjca_ a.118.8.1 (A:) Prolyl 20.6 26 0.0019 23.8 2.3 29 136-170 3-31 (95)
9 d2ff4a2 a.118.8.3 (A:105-283) 17.3 1.2E+02 0.0089 22.9 6.0 55 19-85 72-126 (179)
10 d1xfla_ c.47.1.1 (A:) Thioredo 16.6 34 0.0025 24.2 2.3 35 89-123 78-114 (114)
No 1
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=52.64 E-value=9.7 Score=31.49 Aligned_cols=110 Identities=14% Similarity=0.246 Sum_probs=73.1
Q ss_pred hhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHH--hhhhHHHHHHHhhcchHHHHHHHHHhcccccccceeeeeechh
Q 019569 26 VCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMME--SAGMVFVQSLKELGRVADILNELKLLFTSVTDIPVQVLLTGVC 103 (339)
Q Consensus 26 Vs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlE--sAGMVLVQAlkeLgRt~eif~qLK~~f~SVa~IP~~vlLtGac 103 (339)
.+.+.++|-..-..+|.......--+++++.++|. +--|-=+|.+++=.|++..||.|+++-.|+.+.
T Consensus 30 ~a~~v~~aF~~qr~~L~~a~~~kKP~~~~~~~ll~pl~~~i~~i~~~re~nR~s~~fNHLsavsEgi~al---------- 99 (176)
T d1s0pa_ 30 QVEQLVKAIDAEKALINTASQSKKPSQETLLELIKPLNNFAAEVGKIRDSNRSSKFFNNLSAISESIGFL---------- 99 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHTSGGGG----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHhchhh----------
Confidence 35566666666666666655544334677888887 555667899999999999999999998876543
Q ss_pred hhhcCCCchhHHHHHHHHhccceeecCeEEEEecchhhhHHhhhhhhHhhhhhh-cChhhhhhHhh
Q 019569 104 LEISEGSYADVREFLEEFLSKWSCVDGKYYLVLGIDQYLEVVEMYAVTLLGTVL-NDVDLAISWIE 168 (339)
Q Consensus 104 ~QiaeGS~~~vr~~leEfL~~W~~~d~q~~~lL~~~~Y~eVvElY~Vt~L~~~l-~d~~~AiSWvE 168 (339)
+|..++..- .--++|..+-+|.|+=.||-.-- +|.+ -..||.
T Consensus 100 --------------------gWV~v~~~P--~~~V~e~~dsa~Fy~NrVLke~K~kD~~-hveWvk 142 (176)
T d1s0pa_ 100 --------------------SWVVVEPTP--GPHVAEMRGSAEFYTNRILKEFKGVNQD-QVDWVS 142 (176)
T ss_dssp --------------------GGGGCCSCH--HHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHH
T ss_pred --------------------eeeecCCCh--hhHHHHHHHHHHHHHHHHHHHhhcCCHH-HHHHHH
Confidence 333211100 00146677889999999998653 4554 356764
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.87 E-value=8.1 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=16.5
Q ss_pred hHHHHHH--HHHHHHHHhhchhhhH
Q 019569 274 KIVLGCL--IFLAYYVIQRKRTDIR 296 (339)
Q Consensus 274 Ki~l~~~--~l~~~YvlrRK~a~l~ 296 (339)
|.++.++ +++++|+=|.|++.+|
T Consensus 12 K~~~i~s~l~~~~~y~KR~kWs~lK 36 (47)
T d3cx5d2 12 KTVIILSSLYLLSIWVKKFKWAGIK 36 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 4444444 5559999999999887
No 3
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.78 E-value=10 Score=25.51 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHhhchhhhH
Q 019569 281 IFLAYYVIQRKRTDIR 296 (339)
Q Consensus 281 ~l~~~YvlrRK~a~l~ 296 (339)
+.+.||.=|+|++.+|
T Consensus 21 ~~l~yy~KR~~Ws~lK 36 (46)
T d1ppjd2 21 LPLVYAMKRHKWSVLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc
Confidence 4458899999998876
No 4
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=24.48 E-value=7.7 Score=29.06 Aligned_cols=10 Identities=40% Similarity=1.245 Sum_probs=8.3
Q ss_pred hhccccceee
Q 019569 247 RQTYPGFWWF 256 (339)
Q Consensus 247 ~~~dp~fWwf 256 (339)
+|+||-|||=
T Consensus 5 ~rvEPp~WW~ 14 (93)
T d1h3ga1 5 EHMEPPFWWA 14 (93)
T ss_dssp CEEESSCEET
T ss_pred CCcCCChhHc
Confidence 4789999994
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.34 E-value=27 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=14.5
Q ss_pred chHHHHHHHHH--HHHHHhhch
Q 019569 273 KKIVLGCLIFL--AYYVIQRKR 292 (339)
Q Consensus 273 GKi~l~~~~l~--~~YvlrRK~ 292 (339)
|=|.|.+.+++ ++.|+++|+
T Consensus 8 gl~~F~~~v~laQi~lVlKKKQ 29 (37)
T d1vf5c3 8 WMIAFICLVMLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666555 899999987
No 6
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA, C-terminal domain {Synechococcus elongatus PCC 7942 [TaxId: 1140]}
Probab=22.92 E-value=18 Score=28.15 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.1
Q ss_pred CCChhhHHHHHHHHhhhhcc
Q 019569 171 ALPEENRQDLLRRLHSLYSL 190 (339)
Q Consensus 171 ~LpEe~RQ~LLrkLhsl~s~ 190 (339)
+||++.||+||+.|++-|..
T Consensus 5 ~L~p~ErqeLL~~Lk~~YR~ 24 (106)
T d1r8ja1 5 NLPAYESQKLHQAMQTSYRE 24 (106)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 69999999999999988873
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.05 E-value=26 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=14.2
Q ss_pred chHHHHHHHHH--HHHHHhhch
Q 019569 273 KKIVLGCLIFL--AYYVIQRKR 292 (339)
Q Consensus 273 GKi~l~~~~l~--~~YvlrRK~ 292 (339)
|=|.|.+++++ ++.||++|+
T Consensus 7 gll~F~~~v~laQi~LVLKKKQ 28 (45)
T d1q90a3 7 GLLVFFSFVLLTQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666555 889999886
No 8
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.63 E-value=26 Score=23.81 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.8
Q ss_pred ecchhhhHHhhhhhhHhhhhhhcChhhhhhHhhhc
Q 019569 136 LGIDQYLEVVEMYAVTLLGTVLNDVDLAISWIENA 170 (339)
Q Consensus 136 L~~~~Y~eVvElY~Vt~L~~~l~d~~~AiSWvEka 170 (339)
|+.|++++ +....--.+|-+.||.|.|+|
T Consensus 3 Lsaddc~~------lG~~~~~~g~y~~A~~~~~~A 31 (95)
T d1tjca_ 3 LTAEDSFE------LGKVAYTEADYYHTELWMEQA 31 (95)
T ss_dssp CCHHHHHH------HHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHH------HHHHHHHCCCHHHHHHHHHHH
Confidence 55555544 555566789999999999987
No 9
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.29 E-value=1.2e+02 Score=22.86 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=39.8
Q ss_pred hhcchhhhhhhHHHHHHhHHHHHHHHhhcCCCCchhHHHHHHhhhhHHHHHHHhhcchHHHHHHHHH
Q 019569 19 DQSESYLVCSMYEEAASLGSSVLKRLRDSNNNYNEESYDMMESAGMVFVQSLKELGRVADILNELKL 85 (339)
Q Consensus 19 ~~sE~YLVs~myeeAas~AsSVl~~lr~~~~~~d~el~dMlEsAGMVLVQAlkeLgRt~eif~qLK~ 85 (339)
..++.|+-.|.|++|+..+...++. + -.=|.+=..|..++..+||..+-+...+.
T Consensus 72 ~la~~~~~~g~~~~Al~~~~~al~~----~--------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 72 AKAEAEIACGRASAVIAELEALTFE----H--------PYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----S--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHh----C--------CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3578899999999998887776652 1 11245556788899999999988755444
No 10
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=16.64 E-value=34 Score=24.24 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=25.1
Q ss_pred cccccceeeeeec--hhhhhcCCCchhHHHHHHHHhc
Q 019569 89 SVTDIPVQVLLTG--VCLEISEGSYADVREFLEEFLS 123 (339)
Q Consensus 89 SVa~IP~~vlLtG--ac~QiaeGS~~~vr~~leEfL~ 123 (339)
+|..+|..+++-+ ..-.+.++....++.++++||+
T Consensus 78 ~V~~~Pt~~~~~~G~~v~~~~G~~~~~l~~~i~k~la 114 (114)
T d1xfla_ 78 AIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114 (114)
T ss_dssp TCCSSSEEEEEETTEEEEEEESCCHHHHHHHHHHHCC
T ss_pred ceeeeEEEEEEECCEEEEEEeCcCHHHHHHHHHHhhC
Confidence 4899998887754 3334555566788888888875
Done!