Query 019570
Match_columns 339
No_of_seqs 282 out of 1589
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.7 3.1E-18 1.1E-22 132.7 5.6 62 55-116 15-76 (80)
2 2vi6_A Homeobox protein nanog; 99.7 2.2E-18 7.4E-23 128.2 4.2 60 57-116 3-62 (62)
3 2cue_A Paired box protein PAX6 99.7 6.5E-18 2.2E-22 131.8 7.0 65 55-119 5-69 (80)
4 2h1k_A IPF-1, pancreatic and d 99.7 3.8E-18 1.3E-22 127.4 5.4 59 57-115 3-61 (63)
5 1nk2_P Homeobox protein VND; h 99.7 6E-18 2.1E-22 131.1 6.3 63 57-119 9-71 (77)
6 2dmu_A Homeobox protein goosec 99.7 6.2E-18 2.1E-22 128.5 6.1 62 55-116 5-66 (70)
7 2dmq_A LIM/homeobox protein LH 99.7 5.1E-18 1.7E-22 131.9 5.7 65 55-119 5-69 (80)
8 2dmt_A Homeobox protein BARH-l 99.7 7.9E-18 2.7E-22 131.3 6.8 61 56-116 16-76 (80)
9 1puf_A HOX-1.7, homeobox prote 99.7 1.3E-17 4.5E-22 129.2 7.8 63 55-117 11-73 (77)
10 2kt0_A Nanog, homeobox protein 99.7 6.2E-18 2.1E-22 132.5 6.0 62 55-116 20-81 (84)
11 2e1o_A Homeobox protein PRH; D 99.7 7.2E-18 2.5E-22 128.3 6.1 62 55-116 5-66 (70)
12 2cra_A Homeobox protein HOX-B1 99.7 4.8E-18 1.7E-22 129.3 5.2 62 55-116 5-66 (70)
13 3a01_A Homeodomain-containing 99.7 7.2E-18 2.5E-22 135.6 6.4 71 56-126 16-86 (93)
14 2da2_A Alpha-fetoprotein enhan 99.7 5.7E-18 1.9E-22 128.5 4.7 62 55-116 5-66 (70)
15 2dms_A Homeobox protein OTX2; 99.7 9.5E-18 3.2E-22 130.7 5.8 63 55-117 5-67 (80)
16 1ig7_A Homeotic protein MSX-1; 99.7 1.2E-17 4.2E-22 122.2 5.6 57 58-114 1-57 (58)
17 2hdd_A Protein (engrailed home 99.7 1E-17 3.4E-22 124.2 5.0 58 57-114 3-60 (61)
18 2da1_A Alpha-fetoprotein enhan 99.7 1.2E-17 4.1E-22 126.8 5.4 62 55-116 5-66 (70)
19 2djn_A Homeobox protein DLX-5; 99.7 8.9E-18 3E-22 127.8 4.5 62 55-116 5-66 (70)
20 1yz8_P Pituitary homeobox 2; D 99.7 7.9E-18 2.7E-22 127.4 4.2 61 56-116 2-62 (68)
21 1zq3_P PRD-4, homeotic bicoid 99.7 2.1E-17 7.1E-22 125.3 5.9 61 57-117 2-62 (68)
22 1ahd_P Antennapedia protein mu 99.7 1.5E-17 5.2E-22 126.2 5.1 59 58-116 3-61 (68)
23 2ecc_A Homeobox and leucine zi 99.7 1.5E-17 5.2E-22 130.5 5.2 59 59-117 5-63 (76)
24 2da5_A Zinc fingers and homeob 99.7 1.8E-17 6.1E-22 128.1 5.3 59 58-116 8-66 (75)
25 1b8i_A Ultrabithorax, protein 99.7 1.8E-17 6.2E-22 129.9 5.3 62 55-116 18-79 (81)
26 1bw5_A ISL-1HD, insulin gene e 99.7 1.1E-17 3.8E-22 125.8 3.8 60 57-116 3-62 (66)
27 1fjl_A Paired protein; DNA-bin 99.7 2.9E-17 9.9E-22 128.2 6.3 61 56-116 17-77 (81)
28 2l7z_A Homeobox protein HOX-A1 99.7 2.8E-17 9.6E-22 126.3 6.0 60 57-116 7-66 (73)
29 1wh5_A ZF-HD homeobox family p 99.7 1.8E-17 6.2E-22 130.2 4.9 59 56-114 16-78 (80)
30 1jgg_A Segmentation protein EV 99.7 2.3E-17 7.8E-22 121.9 5.2 58 58-115 2-59 (60)
31 1uhs_A HOP, homeodomain only p 99.7 3E-17 1E-21 125.5 5.9 59 58-116 2-61 (72)
32 2m0c_A Homeobox protein arista 99.7 2.8E-17 9.6E-22 125.7 5.4 62 55-116 7-68 (75)
33 3rkq_A Homeobox protein NKX-2. 99.7 2.9E-17 1E-21 119.5 5.2 56 58-113 3-58 (58)
34 1ftt_A TTF-1 HD, thyroid trans 99.7 3E-17 1E-21 124.4 5.4 59 58-116 3-61 (68)
35 2k40_A Homeobox expressed in E 99.7 1.3E-17 4.6E-22 125.7 3.3 61 58-118 2-62 (67)
36 2da4_A Hypothetical protein DK 99.7 1.9E-17 6.5E-22 129.0 4.2 61 56-116 7-71 (80)
37 2hi3_A Homeodomain-only protei 99.7 4.3E-17 1.5E-21 125.1 6.0 59 58-116 3-62 (73)
38 2r5y_A Homeotic protein sex co 99.7 2.9E-17 1E-21 130.2 5.2 61 55-115 26-86 (88)
39 3nar_A ZHX1, zinc fingers and 99.7 2.3E-17 7.9E-22 133.1 4.6 63 56-118 24-86 (96)
40 3a03_A T-cell leukemia homeobo 99.7 3.6E-17 1.2E-21 119.6 5.1 54 62-115 2-55 (56)
41 3a02_A Homeobox protein arista 99.7 2.8E-17 9.6E-22 121.4 4.5 57 60-116 2-58 (60)
42 1akh_A Protein (mating-type pr 99.7 3.5E-17 1.2E-21 120.9 4.2 57 57-113 5-61 (61)
43 2dn0_A Zinc fingers and homeob 99.7 4.2E-17 1.4E-21 126.1 4.5 59 58-116 9-67 (76)
44 1wh7_A ZF-HD homeobox family p 99.7 3.9E-17 1.3E-21 128.7 4.1 58 56-114 16-78 (80)
45 1b72_A Protein (homeobox prote 99.7 5.5E-17 1.9E-21 130.9 4.9 62 55-116 32-93 (97)
46 1x2n_A Homeobox protein pknox1 99.7 9.4E-17 3.2E-21 122.9 5.7 63 55-117 5-70 (73)
47 2ly9_A Zinc fingers and homeob 99.6 7.8E-17 2.7E-21 123.5 5.1 59 58-116 7-65 (74)
48 2ecb_A Zinc fingers and homeob 99.6 7.2E-17 2.5E-21 129.9 5.0 57 60-116 14-70 (89)
49 1k61_A Mating-type protein alp 99.6 9.8E-17 3.4E-21 118.3 5.1 56 60-115 1-59 (60)
50 1puf_B PRE-B-cell leukemia tra 99.6 9.4E-17 3.2E-21 122.9 4.7 61 58-118 2-65 (73)
51 2cqx_A LAG1 longevity assuranc 99.6 5E-17 1.7E-21 125.4 2.5 58 58-115 9-67 (72)
52 1b72_B Protein (PBX1); homeodo 99.6 2E-16 6.9E-21 124.6 5.7 61 58-118 2-65 (87)
53 1le8_B Mating-type protein alp 99.6 1.2E-16 4E-21 125.8 4.3 63 58-120 3-68 (83)
54 2dmp_A Zinc fingers and homeob 99.6 2.8E-16 9.6E-21 125.5 6.0 58 59-116 15-72 (89)
55 2cuf_A FLJ21616 protein; homeo 99.6 2.8E-16 9.7E-21 126.3 6.0 63 55-117 5-82 (95)
56 1du6_A PBX1, homeobox protein 99.6 1.2E-16 4E-21 119.3 3.3 58 57-114 3-63 (64)
57 2dmn_A Homeobox protein TGIF2L 99.6 3.5E-16 1.2E-20 123.3 5.7 64 55-118 5-71 (83)
58 1mnm_C Protein (MAT alpha-2 tr 99.6 4.4E-16 1.5E-20 123.2 5.7 58 57-114 27-87 (87)
59 2l9r_A Homeobox protein NKX-3. 99.6 8.4E-17 2.9E-21 123.7 1.4 56 64-119 11-66 (69)
60 1e3o_C Octamer-binding transcr 99.6 5.4E-16 1.9E-20 135.6 4.5 60 56-115 100-159 (160)
61 3nau_A Zinc fingers and homeob 99.6 8.7E-16 3E-20 117.7 4.9 53 64-116 11-63 (66)
62 1au7_A Protein PIT-1, GHF-1; c 99.6 5.8E-16 2E-20 133.9 4.2 60 56-115 86-145 (146)
63 2xsd_C POU domain, class 3, tr 99.6 6.7E-16 2.3E-20 136.0 3.8 62 56-117 98-159 (164)
64 3d1n_I POU domain, class 6, tr 99.6 1.4E-15 4.9E-20 131.6 5.7 59 56-114 92-150 (151)
65 1x2m_A LAG1 longevity assuranc 99.6 5.8E-16 2E-20 117.9 2.4 50 66-115 9-59 (64)
66 2e19_A Transcription factor 8; 99.6 1.5E-15 5.1E-20 114.7 4.4 53 62-114 8-60 (64)
67 2da6_A Hepatocyte nuclear fact 99.5 5.6E-15 1.9E-19 121.9 6.8 62 56-117 5-87 (102)
68 3l1p_A POU domain, class 5, tr 99.5 2.8E-15 9.5E-20 130.7 4.5 60 56-115 95-154 (155)
69 3k2a_A Homeobox protein MEIS2; 99.5 4.6E-15 1.6E-19 112.7 3.8 58 63-120 4-64 (67)
70 2d5v_A Hepatocyte nuclear fact 99.5 4.3E-15 1.5E-19 129.7 4.1 61 56-116 96-156 (164)
71 1lfb_A Liver transcription fac 99.5 3.7E-15 1.3E-19 121.9 2.8 61 57-117 9-90 (99)
72 1wi3_A DNA-binding protein SAT 99.5 1.3E-14 4.3E-19 112.2 5.0 58 56-113 6-64 (71)
73 1ic8_A Hepatocyte nuclear fact 99.3 3.6E-13 1.2E-17 122.1 2.7 58 57-114 115-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 1.5E-12 5.1E-17 105.0 5.3 57 64-120 12-71 (89)
75 2da7_A Zinc finger homeobox pr 99.3 2.2E-12 7.5E-17 100.0 4.1 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 3.9E-12 1.3E-16 121.2 3.0 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.1 2E-11 6.8E-16 112.8 4.1 52 61-112 146-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 9.4E-10 3.2E-14 75.4 -0.8 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 92.7 0.061 2.1E-06 41.4 2.6 42 66-107 15-56 (70)
80 2jn6_A Protein CGL2762, transp 81.3 1.2 4.1E-05 34.1 3.5 41 62-106 4-45 (97)
81 2yy0_A C-MYC-binding protein; 81.0 2.1 7.2E-05 30.9 4.4 34 125-158 18-51 (53)
82 1hjb_A Ccaat/enhancer binding 80.4 4.3 0.00015 32.2 6.5 46 109-157 29-74 (87)
83 1gu4_A CAAT/enhancer binding p 78.2 4.2 0.00014 31.6 5.6 45 109-156 29-73 (78)
84 1ci6_A Transcription factor AT 74.7 10 0.00034 28.0 6.7 37 121-157 25-61 (63)
85 1t2k_D Cyclic-AMP-dependent tr 74.3 9.9 0.00034 27.5 6.5 35 122-156 25-59 (61)
86 1gd2_E Transcription factor PA 72.5 9.8 0.00033 29.0 6.2 30 127-156 37-66 (70)
87 2dgc_A Protein (GCN4); basic d 72.2 6.5 0.00022 29.1 5.1 32 127-158 31-62 (63)
88 2wt7_A Proto-oncogene protein 70.5 14 0.00048 27.0 6.6 35 122-156 26-60 (63)
89 2glo_A Brinker CG9653-PA; prot 70.0 3.7 0.00013 28.9 3.3 45 61-106 3-47 (59)
90 2wt7_B Transcription factor MA 69.6 12 0.00042 29.8 6.5 63 95-157 17-86 (90)
91 1jnm_A Proto-oncogene C-JUN; B 64.4 8.3 0.00028 28.1 4.3 33 124-156 27-59 (62)
92 1gd2_E Transcription factor PA 64.4 11 0.00037 28.7 5.0 40 114-153 31-70 (70)
93 1hlv_A CENP-B, major centromer 62.1 9.2 0.00032 30.3 4.6 49 60-111 4-52 (131)
94 2elh_A CG11849-PA, LD40883P; s 51.6 21 0.0007 26.9 4.7 43 59-106 18-60 (87)
95 1tc3_C Protein (TC3 transposas 50.5 15 0.00051 23.1 3.3 39 63-106 5-43 (51)
96 1dh3_A Transcription factor CR 49.7 45 0.0016 23.8 6.0 32 126-157 22-53 (55)
97 2wt7_A Proto-oncogene protein 48.9 55 0.0019 23.8 6.5 32 126-157 23-54 (63)
98 1jko_C HIN recombinase, DNA-in 48.4 5.4 0.00018 25.9 0.8 41 63-108 5-45 (52)
99 2jee_A YIIU; FTSZ, septum, coi 47.6 50 0.0017 25.9 6.3 35 120-154 28-62 (81)
100 1t2k_D Cyclic-AMP-dependent tr 47.5 60 0.0021 23.3 6.5 31 126-156 22-52 (61)
101 3hug_A RNA polymerase sigma fa 45.7 23 0.00078 26.6 4.1 46 64-114 38-83 (92)
102 2jee_A YIIU; FTSZ, septum, coi 44.7 68 0.0023 25.1 6.7 43 114-156 29-71 (81)
103 1s7o_A Hypothetical UPF0122 pr 44.4 90 0.0031 24.8 7.7 47 63-114 22-68 (113)
104 2lv7_A Calcium-binding protein 44.3 66 0.0023 24.6 6.7 46 61-106 27-79 (100)
105 3gp4_A Transcriptional regulat 41.4 1.4E+02 0.0046 24.7 8.7 34 61-107 38-71 (142)
106 2yy0_A C-MYC-binding protein; 38.9 37 0.0013 24.3 4.1 26 133-158 19-44 (53)
107 2o8x_A Probable RNA polymerase 38.9 18 0.00063 25.1 2.5 45 64-113 16-60 (70)
108 3hnw_A Uncharacterized protein 38.3 97 0.0033 26.0 7.3 39 118-156 88-126 (138)
109 1jnm_A Proto-oncogene C-JUN; B 37.9 1E+02 0.0034 22.2 6.4 32 126-157 22-53 (62)
110 2oxj_A Hybrid alpha/beta pepti 37.9 46 0.0016 22.1 4.0 24 134-157 9-32 (34)
111 3lph_A Protein REV; helix-loop 37.9 34 0.0011 26.3 3.8 35 69-117 18-52 (72)
112 3s4r_A Vimentin; alpha-helix, 37.7 59 0.002 25.6 5.5 39 118-156 55-93 (93)
113 2x7l_M HIV REV; nuclear export 37.2 28 0.00095 29.0 3.5 34 70-117 16-49 (115)
114 3hnw_A Uncharacterized protein 36.4 97 0.0033 26.0 7.0 46 113-158 76-121 (138)
115 2wuj_A Septum site-determining 35.5 24 0.00083 25.4 2.7 30 127-156 28-57 (57)
116 1xsv_A Hypothetical UPF0122 pr 35.1 1.3E+02 0.0044 23.7 7.2 46 64-114 26-71 (113)
117 3m9b_A Proteasome-associated A 33.7 59 0.002 30.4 5.6 37 117-153 59-95 (251)
118 3gpv_A Transcriptional regulat 33.4 87 0.003 26.0 6.2 36 61-109 52-87 (148)
119 3mzy_A RNA polymerase sigma-H 32.7 44 0.0015 26.2 4.1 45 64-114 110-154 (164)
120 1go4_E MAD1 (mitotic arrest de 32.4 51 0.0017 26.7 4.3 34 127-160 13-46 (100)
121 3vmx_A Voltage-gated hydrogen 31.9 1.2E+02 0.0042 21.5 5.7 40 119-158 4-43 (48)
122 1p4w_A RCSB; solution structur 31.1 47 0.0016 25.9 3.9 46 61-112 32-77 (99)
123 1deb_A APC protein, adenomatou 31.1 56 0.0019 23.6 3.8 32 126-157 3-34 (54)
124 3m48_A General control protein 31.0 60 0.0021 21.4 3.7 24 134-157 8-31 (33)
125 3c57_A Two component transcrip 30.4 33 0.0011 26.2 2.8 46 63-114 27-72 (95)
126 3m91_A Proteasome-associated A 29.8 1.3E+02 0.0044 21.4 5.6 34 124-157 14-47 (51)
127 3i5g_B Myosin regulatory light 29.7 77 0.0026 25.6 5.2 41 59-99 5-50 (153)
128 2oto_A M protein; helical coil 29.6 1.6E+02 0.0056 24.6 7.4 21 104-125 22-42 (155)
129 3c3g_A Alpha/beta peptide with 28.9 84 0.0029 20.7 4.1 25 134-158 8-32 (33)
130 1fse_A GERE; helix-turn-helix 28.2 41 0.0014 23.5 2.8 46 62-113 10-55 (74)
131 1je8_A Nitrate/nitrite respons 27.5 29 0.00099 25.7 2.0 46 63-114 21-66 (82)
132 1nlw_A MAD protein, MAX dimeri 27.1 76 0.0026 24.2 4.3 31 127-157 48-78 (80)
133 1ci6_A Transcription factor AT 27.0 1.7E+02 0.0059 21.2 6.1 30 126-155 23-52 (63)
134 3c3f_A Alpha/beta peptide with 26.9 92 0.0031 20.6 4.0 24 134-157 9-32 (34)
135 2rn7_A IS629 ORFA; helix, all 26.3 53 0.0018 25.1 3.4 46 61-106 4-52 (108)
136 1gu4_A CAAT/enhancer binding p 26.2 1.3E+02 0.0046 23.0 5.6 33 125-157 35-67 (78)
137 3oja_A Leucine-rich immune mol 26.0 1.5E+02 0.005 28.7 7.2 37 123-159 432-468 (487)
138 1x3u_A Transcriptional regulat 25.7 26 0.00089 25.0 1.4 45 64-114 17-61 (79)
139 1iuf_A Centromere ABP1 protein 25.6 78 0.0027 25.9 4.5 48 58-108 6-60 (144)
140 3oja_B Anopheles plasmodium-re 25.4 1.5E+02 0.0051 29.1 7.3 9 140-148 544-552 (597)
141 2v66_B Nuclear distribution pr 24.9 2.4E+02 0.0082 23.1 7.2 20 138-157 40-59 (111)
142 1ku3_A Sigma factor SIGA; heli 24.9 60 0.002 23.1 3.3 49 64-113 11-59 (73)
143 1uii_A Geminin; human, DNA rep 24.6 1.8E+02 0.0062 22.8 6.1 28 128-155 48-75 (83)
144 2rnj_A Response regulator prot 24.5 50 0.0017 24.6 2.9 46 63-114 29-74 (91)
145 3m91_A Proteasome-associated A 24.4 1.9E+02 0.0065 20.6 5.7 36 117-152 14-49 (51)
146 2p7v_B Sigma-70, RNA polymeras 24.3 42 0.0014 23.6 2.3 49 64-113 6-54 (68)
147 1nkp_B MAX protein, MYC proto- 24.0 94 0.0032 23.4 4.4 30 128-157 49-78 (83)
148 1r8e_A Multidrug-efflux transp 24.0 92 0.0031 27.5 5.0 34 62-108 43-76 (278)
149 1kd8_B GABH BLL, GCN4 acid bas 23.8 1.3E+02 0.0044 20.2 4.3 26 133-158 8-33 (36)
150 1wt6_A Myotonin-protein kinase 23.2 2.2E+02 0.0075 22.2 6.3 41 118-158 30-70 (81)
151 1tty_A Sigma-A, RNA polymerase 23.2 51 0.0017 24.5 2.7 50 64-114 19-68 (87)
152 1rp3_A RNA polymerase sigma fa 23.1 51 0.0017 27.8 3.0 46 64-114 188-233 (239)
153 3m9b_A Proteasome-associated A 22.6 93 0.0032 29.0 4.8 43 118-160 53-95 (251)
154 4h22_A Leucine-rich repeat fli 21.9 2.6E+02 0.009 22.7 6.8 51 110-160 35-85 (103)
155 2v71_A Nuclear distribution pr 21.7 2.5E+02 0.0085 25.0 7.2 50 108-157 59-112 (189)
156 1hjb_A Ccaat/enhancer binding 21.0 1.6E+02 0.0056 23.0 5.3 33 125-157 35-67 (87)
157 3ra3_A P1C; coiled coil domain 20.8 91 0.0031 19.4 2.9 17 140-156 7-23 (28)
158 3lay_A Zinc resistance-associa 20.5 3.5E+02 0.012 23.5 7.9 14 64-77 68-81 (175)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=132.75 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.7
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34455666699999999999999999999999999999999999999999999999999864
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.72 E-value=2.2e-18 Score=128.18 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=53.1
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.+++|+.||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 456667799999999999999999999999999999999999999999999999999863
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=6.5e-18 Score=131.81 Aligned_cols=65 Identities=29% Similarity=0.572 Sum_probs=59.0
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ek 119 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 44566677799999999999999999999999999999999999999999999999999976433
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=3.8e-18 Score=127.38 Aligned_cols=59 Identities=34% Similarity=0.630 Sum_probs=54.9
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
.+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 45667779999999999999999999999999999999999999999999999999985
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.72 E-value=6e-18 Score=131.11 Aligned_cols=63 Identities=30% Similarity=0.473 Sum_probs=57.4
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ek 119 (339)
.+++|++||..|+..||..|..++||+..++..||..|||+++||+|||||||+|+|+.+.+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 344555699999999999999999999999999999999999999999999999999976544
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=128.50 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.3
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34566677799999999999999999999999999999999999999999999999999864
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-18 Score=131.88 Aligned_cols=65 Identities=25% Similarity=0.498 Sum_probs=59.1
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ek 119 (339)
...+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 34566677799999999999999999999999999999999999999999999999999976543
No 8
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.9e-18 Score=131.33 Aligned_cols=61 Identities=34% Similarity=0.600 Sum_probs=55.9
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3455556699999999999999999999999999999999999999999999999999853
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=1.3e-17 Score=129.19 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=57.9
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345566777999999999999999999999999999999999999999999999999998754
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=132.52 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=56.7
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
...+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34455666799999999999999999999999999999999999999999999999999864
No 11
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=7.2e-18 Score=128.32 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.2
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
...+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34556677799999999999999999999999999999999999999999999999999864
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4.8e-18 Score=129.27 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=7.2e-18 Score=135.59 Aligned_cols=71 Identities=30% Similarity=0.495 Sum_probs=58.8
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHHHHHHHhh
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKA 126 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~eke~~~LKa 126 (339)
..+++|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|||++..+.....+++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~ 86 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQA 86 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHH
Confidence 34555666999999999999999999999999999999999999999999999999999876655444443
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=128.54 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.2
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566677799999999999999999999999999999999999999999999999999854
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=9.5e-18 Score=130.71 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=57.8
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
...+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 345666777999999999999999999999999999999999999999999999999998753
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=122.24 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356677999999999999999999999999999999999999999999999999986
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.70 E-value=1e-17 Score=124.18 Aligned_cols=58 Identities=31% Similarity=0.613 Sum_probs=52.6
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3556677999999999999999999999999999999999999999999999999987
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=126.75 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.0
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
...+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34556667799999999999999999999999999999999999999999999999999864
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.9e-18 Score=127.81 Aligned_cols=62 Identities=31% Similarity=0.481 Sum_probs=57.1
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 44566677799999999999999999999999999999999999999999999999999853
No 20
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.69 E-value=7.9e-18 Score=127.42 Aligned_cols=61 Identities=25% Similarity=0.532 Sum_probs=57.0
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
..+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3566677799999999999999999999999999999999999999999999999999865
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.1e-17 Score=125.28 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=56.8
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
.+++|++||..|+.+||..|..++||+..++..||..+||++++|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3566777999999999999999999999999999999999999999999999999998754
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=1.5e-17 Score=126.17 Aligned_cols=59 Identities=34% Similarity=0.679 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 56677799999999999999999999999999999999999999999999999999865
No 23
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.5e-17 Score=130.55 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.4
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 59 rKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
.++++||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998754
No 24
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-17 Score=128.14 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
++++++||..|+.+||..|..++||+..+|..||..+||+++||++||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677799999999999999999999999999999999999999999999999999864
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=1.8e-17 Score=129.85 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=54.0
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34566677799999999999999999999999999999999999999999999999999864
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=1.1e-17 Score=125.76 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=56.0
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.+++|++||..|+..||..|..++||+..++..||..+||++.||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 355666799999999999999999999999999999999999999999999999999864
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.68 E-value=2.9e-17 Score=128.22 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=56.3
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
..+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455566699999999999999999999999999999999999999999999999999865
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=2.8e-17 Score=126.28 Aligned_cols=60 Identities=27% Similarity=0.485 Sum_probs=56.1
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 456667799999999999999999999999999999999999999999999999999864
No 29
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=1.8e-17 Score=130.25 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=54.5
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~----~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
..+++|+.||.+|+..||..|.. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44555666999999999999999 999999999999999999999999999999999985
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-17 Score=121.89 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
+++|++||..|+..||..|..++||+..++..||..+||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567779999999999999999999999999999999999999999999999999984
No 31
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=3e-17 Score=125.47 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.++|++||..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356778999999999999996 99999999999999999999999999999999999965
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=2.8e-17 Score=125.72 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=56.9
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..++.|++||..|+..||..|..++||+..++..||..+||++.||++||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34455666799999999999999999999999999999999999999999999999999864
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=2.9e-17 Score=119.47 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=53.1
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
++.|++||..|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 45667799999999999999999999999999999999999999999999999986
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=3e-17 Score=124.38 Aligned_cols=59 Identities=32% Similarity=0.538 Sum_probs=55.7
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+++|++||..|+..||..|..++||+..++..||..+||++++|++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45666799999999999999999999999999999999999999999999999999865
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=125.66 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.9
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~e 118 (339)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567779999999999999999999999999999999999999999999999999987643
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=128.98 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.0
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~----~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
..+++|+.||.+|+.+||.+|..+ +||+..+|.+||.++||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345556669999999999999999 9999999999999999999999999999999999854
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=4.3e-17 Score=125.09 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+++|++||..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456777999999999999995 99999999999999999999999999999999999965
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.67 E-value=2.9e-17 Score=130.23 Aligned_cols=61 Identities=34% Similarity=0.696 Sum_probs=54.1
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4456677779999999999999999999999999999999999999999999999999985
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=133.07 Aligned_cols=63 Identities=29% Similarity=0.457 Sum_probs=56.5
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~e 118 (339)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+.+++
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 345667779999999999999999999999999999999999999999999999999997643
No 40
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=119.57 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 62 rRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
+.||..|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 458999999999999999999999999999999999999999999999999985
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.67 E-value=2.8e-17 Score=121.40 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 60 KRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 367799999999999999999999999999999999999999999999999999864
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.66 E-value=3.5e-17 Score=120.90 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
.+++|++||..|+.+||..|..++||+..++..||..+||++.||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 445566699999999999999999999999999999999999999999999999986
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-17 Score=126.08 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
...|++||..|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34577799999999999999999999999999999999999999999999999999864
No 44
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.66 E-value=3.9e-17 Score=128.67 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=53.1
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~-----~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
..+++|+.||.+|+..|| .|.. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345556669999999999 7999 999999999999999999999999999999999985
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5.5e-17 Score=130.94 Aligned_cols=62 Identities=35% Similarity=0.611 Sum_probs=54.8
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566677799999999999999999999999999999999999999999999999999875
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=9.4e-17 Score=122.88 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=56.8
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
+..+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345566667999999999999987 999999999999999999999999999999999998653
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=7.8e-17 Score=123.46 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
++.|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 45677799999999999999999999999999999999999999999999999999865
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=7.2e-17 Score=129.94 Aligned_cols=57 Identities=21% Similarity=0.394 Sum_probs=53.9
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 60 KRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
+.++||.+|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 445799999999999999999999999999999999999999999999999999864
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.65 E-value=9.8e-17 Score=118.31 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.3
Q ss_pred CCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 60 KRrRfT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
|+++||..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677999999999999999 9999999999999999999999999999999999873
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=9.4e-17 Score=122.88 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHH
Q 019570 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~e 118 (339)
+++|++||..|+.+||.+| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5667779999999999999 899999999999999999999999999999999999986543
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=5e-17 Score=125.36 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=54.2
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F-~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
.++++|++.+|+.+||..| ..++||+..+|.+||..+||+++||+|||||||+|||+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456679999999999999 999999999999999999999999999999999999975
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=2e-16 Score=124.65 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHH
Q 019570 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~e 118 (339)
+++|++|+..|+.+||.+| ..++||+..+|..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5667779999999999999 899999999999999999999999999999999999987543
No 53
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=1.2e-16 Score=125.78 Aligned_cols=63 Identities=24% Similarity=0.358 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHHH
Q 019570 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~eke 120 (339)
+++++||+..|+.+||.+|.. ++||+..++..||..+||+++||++||||||+|+|+.....+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 455667999999999999999 999999999999999999999999999999999999754433
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-16 Score=125.49 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=54.2
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 59 rKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
.+++++|..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4455699999999999999999999999999999999999999999999999998864
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=2.8e-16 Score=126.29 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.4
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------CCccceeehhhhhHHHhhHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------Ls~rQVkVWFQNRRaK~Krkq~ 117 (339)
...++.|++||..|+.+||..|..++||+..+|++||..|+ |++.+|++||||||+|+|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34455666699999999999999999999999999999999 9999999999999999998754
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=119.31 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.3
Q ss_pred cCCCCCcCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.+++|++|+..|+.+||.+| ..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35666779999999999999 89999999999999999999999999999999999986
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=123.29 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCcCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHH
Q 019570 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~~~krKRrRfT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~e 118 (339)
...+++|++|+..|+.+||.+|.. ++||+..+|..||..+||+++||++||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345556667999999999999988 5999999999999999999999999999999999986543
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=4.4e-16 Score=123.17 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.1
Q ss_pred cCCCCCcCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
++++|++|+..|+.+||.+|.. ++||+..+|..||..+||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4555667999999999999999 999999999999999999999999999999999983
No 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-17 Score=123.74 Aligned_cols=56 Identities=41% Similarity=0.609 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ek 119 (339)
+|..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++...
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~ 66 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhh
Confidence 79999999999999999999999999999999999999999999999999976543
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.59 E-value=5.4e-16 Score=135.65 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.6
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
.++++|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445566669999999999999999999999999999999999999999999999999984
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.58 E-value=8.7e-16 Score=117.72 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999864
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=5.8e-16 Score=133.87 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=54.0
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
.++++|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 344555669999999999999999999999999999999999999999999999999985
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.57 E-value=6.7e-16 Score=136.03 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=52.3
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
+.+++|++||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|||+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 44555566999999999999999999999999999999999999999999999999999653
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=131.58 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.7
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++++|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|+
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34555566999999999999999999999999999999999999999999999999986
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=5.8e-16 Score=117.88 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 66 ~eQl~~LE~~F-~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 46899999999 578999999999999999999999999999999999874
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=114.75 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 62 rRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
..++..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999999876
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-15 Score=121.88 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=56.5
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHh---------------------CCCccceeehhhhhHHHhhH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~L---------------------gLs~rQVkVWFQNRRaK~Kr 114 (339)
..++.|++|++.|+.+||..|..++||+..+|++||..+ +|++.+|++||||||+++|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 455566669999999999999999999999999999999 79999999999999999998
Q ss_pred HHH
Q 019570 115 KQL 117 (339)
Q Consensus 115 kq~ 117 (339)
++.
T Consensus 85 ~~~ 87 (102)
T 2da6_A 85 RQK 87 (102)
T ss_dssp HHH
T ss_pred hhH
Confidence 753
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.54 E-value=2.8e-15 Score=130.65 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=55.3
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krk 115 (339)
.++++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 455666679999999999999999999999999999999999999999999999999974
No 69
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.6e-15 Score=112.68 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHHH
Q 019570 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 63 RfT~eQl~~LE~~F~---~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~eke 120 (339)
+|+.+|+.+|+.+|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999999776554
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.52 E-value=4.3e-15 Score=129.70 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=53.8
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHH
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq 116 (339)
..+++|++||..|+..||..|..++||+..+|..||..+||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4455666699999999999999999999999999999999999999999999999999864
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.51 E-value=3.7e-15 Score=121.91 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=53.1
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHH------------------hC---CCccceeehhhhhHHHhhHH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~------------------Lg---Ls~rQVkVWFQNRRaK~Krk 115 (339)
.++.|+.||..|+.+||..|..++||+..+|++||.. || |++.+|++||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 3444555999999999999999999999999999999 88 99999999999999999887
Q ss_pred HH
Q 019570 116 QL 117 (339)
Q Consensus 116 q~ 117 (339)
+.
T Consensus 89 ~~ 90 (99)
T 1lfb_A 89 HK 90 (99)
T ss_dssp C-
T ss_pred ch
Confidence 53
No 72
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.3e-14 Score=112.21 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CcCCCCCcCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 56 ~~krKRrRfT~eQl~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
..+|.|+.|+.+|+..|+.+|+. ++||+.+.|..||.++||++++|+|||||||--.+
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 34555566999999999999999 99999999999999999999999999999997654
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=3.6e-13 Score=122.09 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=51.6
Q ss_pred cCCCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCccceeehhhhhHHHhhH
Q 019570 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------Ls~rQVkVWFQNRRaK~Kr 114 (339)
.++.|+.|+..|+.+||..|..++||+...|++||..++ |++.+|++||||||+++|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 344444599999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=105.01 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHhhhh---cCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHHHHH
Q 019570 64 LSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 64 fT~eQl~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~eke 120 (339)
|+.+++.+|+.+|.. ++||+..+|.+||..+||+++||++||||||+|+++..+++.
T Consensus 12 l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 899999999999987 999999999999999999999999999999999998765543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=100.01 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHH
Q 019570 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 66 ~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK 111 (339)
.+|+..||.+|..+++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.20 E-value=3.9e-12 Score=121.18 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
++.++..|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=112.77 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=48.1
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhC---------------------CCccceeehhhhhHHHh
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------Ls~rQVkVWFQNRRaK~ 112 (339)
|..|++.|+.+||..|..++||+..+|++||..++ |++.||++||||||++.
T Consensus 146 R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 146 RFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33489999999999999999999999999999988 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=9.4e-10 Score=75.42 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=22.5
Q ss_pred cceeehhhhhHHHhhHHHHHHHHHHHh
Q 019570 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (339)
Q Consensus 99 rQVkVWFQNRRaK~Krkq~eke~~~LK 125 (339)
+||+|||||||+|||+++.++.+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999998876655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.71 E-value=0.061 Score=41.44 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhh
Q 019570 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 66 ~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQN 107 (339)
+.-.+.|+.+|...+.+.......|+.+.+|+..||+-||-.
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334578999999999999999999999999999999999953
No 80
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=81.27 E-value=1.2 Score=34.13 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=28.5
Q ss_pred CcCCHHHHHHHHHhhhhc-CCCCHHHHHHHHHHhCCCccceeehhh
Q 019570 62 RRLSVDQVKALEKNFEVE-NKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 62 rRfT~eQl~~LE~~F~~~-~yPs~~~ReeLA~~LgLs~rQVkVWFQ 106 (339)
++||.++....-..+... . ....++|+.+|++...|..|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 458887765544444322 2 2356899999999999999974
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.98 E-value=2.1 Score=30.94 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=27.5
Q ss_pred hhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 125 Ka~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
.+.+++|+.++..|+...+.|.+++.+|+++|.+
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888888888888753
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.40 E-value=4.3 Score=32.17 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=28.7
Q ss_pred HHHhhHHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 109 RaK~Krkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
|.+.|++..+.+ +......|..++..|+.+.+.|..|+..|+..+.
T Consensus 29 rSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544333 3345566666777777777777777777776665
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=78.17 E-value=4.2 Score=31.63 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHhhHHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 109 RaK~Krkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
|.+.|++..+.+ +......|..++..|+.+.+.|..|+..|+..+
T Consensus 29 rSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544433 333455566666666666666666666666544
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=74.65 E-value=10 Score=27.95 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 121 ~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
...|......|...+..|..+...|..|+..||.-|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777777777778888888888776554
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.29 E-value=9.9 Score=27.55 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 122 ~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
..|....+.|..++..|..+...|+.|+..|+..|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666677777777777777777777654
No 86
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.48 E-value=9.8 Score=28.95 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=15.6
Q ss_pred hhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 127 ~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
....|...+..+..+|+.|+.++..|..++
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555666666655555544
No 87
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.23 E-value=6.5 Score=29.12 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=22.4
Q ss_pred hhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 127 ~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
..+.|......|..+|..|..++..|+..+.+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666677788999999999999887753
No 88
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.47 E-value=14 Score=27.04 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=21.3
Q ss_pred HHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 122 ~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
..|....+.|..++..|..+...|..++..|+..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666554
No 89
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.03 E-value=3.7 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhh
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQ 106 (339)
+++|+.+........+. ..........++|+++|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45689888766644443 3332222356899999999999999964
No 90
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.59 E-value=12 Score=29.84 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCCccceeehhhhhHHHh-------hHHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 95 GLQPRQVAVWFQNRRARW-------KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 95 gLs~rQVkVWFQNRRaK~-------Krkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
||+..+|.-|=|-||+-. -+.....+...|......|..+.+.|..|+..+..|...+|.+..
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655444311 111222334555666667777777778888888888888777654
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.39 E-value=8.3 Score=28.10 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=15.4
Q ss_pred HhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 124 LKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 124 LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
|....+.|..++..|..+...|..|+..|+..|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555443
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=64.37 E-value=11 Score=28.70 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHH
Q 019570 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELK 153 (339)
Q Consensus 114 rkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk 153 (339)
-+.++.....|...+..+..++..|+.++..|..|+..||
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455667777777788888888888888888888887764
No 93
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=62.12 E-value=9.2 Score=30.29 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=36.2
Q ss_pred CCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHH
Q 019570 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 60 KRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK 111 (339)
+|+++|.++...+-..+.....+. ..+||+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 566799998877666665454443 3368999999999999998766543
No 94
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.56 E-value=21 Score=26.90 Aligned_cols=43 Identities=14% Similarity=0.313 Sum_probs=29.7
Q ss_pred CCCCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhh
Q 019570 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 59 rKRrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQ 106 (339)
+++++++.++....-..+. ... ...++|+.+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3445689888554444454 222 256889999999999999963
No 95
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.52 E-value=15 Score=23.15 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhh
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQ 106 (339)
.++.++...+-..+... + ...++|+.+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 47777765555555332 2 256789999999999999975
No 96
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=49.74 E-value=45 Score=23.82 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=23.1
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+..+.|......|..+|..|..++..|+..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555666677788888888888888876543
No 97
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.90 E-value=55 Score=23.78 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=23.5
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
.....|....+.|..+|..|..++..|+..+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777888888888888777776543
No 98
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=48.38 E-value=5.4 Score=25.91 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhh
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNR 108 (339)
.++.++...+...+... ....+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666666555555432 235688999999999999998643
No 99
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.57 E-value=50 Score=25.86 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=13.5
Q ss_pred HHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 019570 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (339)
Q Consensus 120 e~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~ 154 (339)
+.+.||..+..|..++..++...+.|..++.+|+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333433333333333322222334444444443
No 100
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=47.54 E-value=60 Score=23.26 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.2
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
...+.|....+.+..+|..|..++..|+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777777776654
No 101
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.65 E-value=23 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
++..+..+|.-.|.... .-.+||..+|++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 78888888876553322 35689999999999999887655555444
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=44.66 E-value=68 Score=25.08 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 114 rkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
...++++...|.+....++...+.+.++|+.|+.|...-++++
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666655544443
No 103
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=44.35 E-value=90 Score=24.83 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.+++.|..++.-.|.... .-.++|..+|+++..|+.|...-|.+.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888877654332 34688999999999999998765555544
No 104
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=44.31 E-value=66 Score=24.57 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCC--Cccceeehhh
Q 019570 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGL--QPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~-----~~yPs~~~ReeLA~~LgL--s~rQVkVWFQ 106 (339)
...++.+++..|...|.. +.+.+..+-..+.+.+|. +..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345899999999999975 457888888888888874 5566666653
No 105
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=41.41 E-value=1.4e+02 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=24.5
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhh
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQN 107 (339)
.|.|+..++..|.. ....+.+|++-..|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 38 VRKFGAEDLRWILF-------------TRQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHH
Confidence 45599999999853 23347788888888777654
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.91 E-value=37 Score=24.27 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=14.3
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 133 LNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 133 ~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
.+.+.|+.||+.|+.++..|+.++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 107
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=38.85 E-value=18 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.043 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
+++.+..+|...|... ..-.++|..+|+++..|+.|...-|.+.+
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888888888765332 23468899999999999988764444444
No 108
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.28 E-value=97 Score=26.03 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 118 eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
.++...||...-.++...+.+..+++.|++++..|..++
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555555555554444433
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.94 E-value=1e+02 Score=22.16 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=23.9
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
.....|......+..+|..|..++..|+..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888888888888888776553
No 110
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.88 E-value=46 Score=22.11 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.8
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 134 NYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 134 e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
..+.|..+|..|.+|+.+||+-|.
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh
Confidence 445677799999999999998764
No 111
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=37.85 E-value=34 Score=26.33 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=23.2
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 69 l~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
+..+.-.|+.++||+++--.. | =.|||.+|+..+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHH
Confidence 345556689999998652211 1 1699999988764
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.75 E-value=59 Score=25.58 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 118 eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
+.....|+...+.+..++..+..+...|..++.++|.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666777777777777777777777777777777664
No 113
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=37.22 E-value=28 Score=29.00 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=22.5
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhHHHH
Q 019570 70 KALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 70 ~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Krkq~ 117 (339)
..++-.|+.++||.++-- +|- =.|||.+||.++.
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHH
Confidence 445556899999986511 111 1699999998764
No 114
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.39 E-value=97 Score=26.04 Aligned_cols=46 Identities=30% Similarity=0.276 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 113 KTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 113 Krkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
+...++.+...+....-.|+++..+.+.+.+.+.+++.+|+.++..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~ 121 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINK 121 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777777777788888888777776543
No 115
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.49 E-value=24 Score=25.38 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=16.8
Q ss_pred hhHHHHhhhhhhHHhHHHHHHHHHHHHHHh
Q 019570 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 127 ~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l 156 (339)
-.+.+......+..+|..|+.++.+|+.+|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555566666777777777777776653
No 116
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.07 E-value=1.3e+02 Score=23.74 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++.+..++.-.|.... .-.++|..+|+++..|+.|...-|.+.|.
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67777777766553322 34688999999999999988755555544
No 117
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.68 E-value=59 Score=30.35 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHH
Q 019570 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELK 153 (339)
Q Consensus 117 ~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk 153 (339)
++++...|.+.+.+|...-..++.+...|+.|+++|+
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555444444444444444444444
No 118
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.38 E-value=87 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhH
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRR 109 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRR 109 (339)
.|.|+..++..|.. ....+.+|++-..|+.++...+
T Consensus 52 ~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~ 87 (148)
T 3gpv_A 52 DRIFNEEALKYLEM-------------ILCLKNTGMPIQKIKQFIDWSM 87 (148)
T ss_dssp CEEBCHHHHHHHHH-------------HHHHHTTTCCHHHHHHHHHHHH
T ss_pred CeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhhh
Confidence 34599999999853 2334778888888888876443
No 119
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.67 E-value=44 Score=26.23 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++.+..+|. .|- ....-.++|..+|++...|+.+...-|.+.|+
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6677777776 332 22245689999999999999887644444443
No 120
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.44 E-value=51 Score=26.73 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.8
Q ss_pred hhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhhhh
Q 019570 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (339)
Q Consensus 127 ~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~~~ 160 (339)
.++.++...++|..|+..|+.++..|..+|....
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788888888888888888886643
No 121
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=31.93 E-value=1.2e+02 Score=21.52 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 119 RDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 119 ke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
+....||..++.|-.....++.....+..|+.+|+.-|.+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777888888888776643
No 122
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.12 E-value=47 Score=25.93 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.8
Q ss_pred CCcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHh
Q 019570 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~ 112 (339)
...+|+.+..+|.-.+. .+ .-.++|..+|+++..|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34599999999977553 22 237899999999999998876444443
No 123
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=31.09 E-value=56 Score=23.63 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=19.8
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+.||.|-.+.+.++.||-.|+.|++.--..|.
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~dNS~~ls 34 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELEDNSNHLT 34 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 35666666666666677777766655444443
No 124
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=30.99 E-value=60 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.6
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 134 NYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 134 e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
..+.|..+|..|..|+.+||+-+.
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 445677799999999999998764
No 125
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=30.36 E-value=33 Score=26.15 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.+++.+..+|.-.+. .+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 489999999987532 22 24689999999999999887655555443
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.80 E-value=1.3e+02 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=17.2
Q ss_pred HhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 124 LKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 124 LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
++.....|...|..|......-+.++..|++.+.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555543
No 127
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.72 E-value=77 Score=25.58 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=31.9
Q ss_pred CCCCcCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHHhCCCcc
Q 019570 59 EKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (339)
Q Consensus 59 rKRrRfT~eQl~~LE~~F~~-----~~yPs~~~ReeLA~~LgLs~r 99 (339)
+++.++|.+|+..|...|.. ..+.+..+-..+.+.+|..+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34566999999999999974 457888888888888887654
No 128
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=29.65 E-value=1.6e+02 Score=24.60 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=11.1
Q ss_pred hhhhhHHHhhHHHHHHHHHHHh
Q 019570 104 WFQNRRARWKTKQLERDYGVLK 125 (339)
Q Consensus 104 WFQNRRaK~Krkq~eke~~~LK 125 (339)
| +|.+.+.+...+..+...++
T Consensus 22 l-~n~~l~~eN~~Lk~e~e~l~ 42 (155)
T 2oto_A 22 I-QNIRLRHENKDLKARLENAM 42 (155)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHHHH
Confidence 5 55555555555555555443
No 129
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.89 E-value=84 Score=20.72 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=19.5
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 134 NYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 134 e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
..+.+..+|..|..|+.+||+-|.+
T Consensus 8 KvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 8 KLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 3456777899999999999987653
No 130
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=28.18 E-value=41 Score=23.47 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=33.2
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 62 rRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
..+++.+..+|...+ ..+ .-.++|..+|+++..|+.+...-+.+.+
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 348999999997742 222 3467999999999999888765444443
No 131
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.52 E-value=29 Score=25.75 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.++..+..+|.-++. . ..-.++|..+|++...|+.+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 489999999987432 2 235689999999999999887655555444
No 132
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=27.06 E-value=76 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=22.3
Q ss_pred hhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 127 ~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
.+..|+.....+..+++.|+.++..|+.+|.
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444666666777788888888888887764
No 133
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.03 E-value=1.7e+02 Score=21.16 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=15.6
Q ss_pred hhhHHHHhhhhhhHHhHHHHHHHHHHHHHH
Q 019570 126 ANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 126 a~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~ 155 (339)
...+.|......|..+|..|..++..|+..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555443
No 134
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.89 E-value=92 Score=20.65 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=19.5
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 134 NYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 134 e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
..+.|..+|..|..|+.+||+-+.
T Consensus 9 KVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 9 KLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 345677789999999999998764
No 135
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=26.33 E-value=53 Score=25.07 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCcCCHHHHHHHHHhh-hhc-CCCCH-HHHHHHHHHhCCCccceeehhh
Q 019570 61 KRRLSVDQVKALEKNF-EVE-NKLEP-ERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~eQl~~LE~~F-~~~-~yPs~-~~ReeLA~~LgLs~rQVkVWFQ 106 (339)
+++||.++....-..+ ... .+++. ....++|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888765443333 322 13332 3567899999999999999953
No 136
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.19 E-value=1.3e+02 Score=22.99 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=22.9
Q ss_pred hhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 125 Ka~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+.....+......|..+|..|+.++..|+..+.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777788888888887776553
No 137
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.99 E-value=1.5e+02 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=19.2
Q ss_pred HHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhhh
Q 019570 123 VLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 123 ~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~~ 159 (339)
..++..+..+.+.+.++++++++++++.++..++.+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3444444444555555555556655555555555433
No 138
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.68 E-value=26 Score=25.01 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++.+..+|.-++ ..+ ...++|..+|++...|+.+...-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 7888888887642 222 24589999999999999887655555544
No 139
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.56 E-value=78 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=35.1
Q ss_pred CCCCCcCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----Hh--CCCccceeehhhhh
Q 019570 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (339)
Q Consensus 58 krKRrRfT~eQl~~LE~~F-~~~~yPs~~~ReeLA~----~L--gLs~rQVkVWFQNR 108 (339)
+++|+++|.+|...+-..+ ..++..+.. +||. ++ +++...|.-|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5567779999999888888 566655443 4566 77 77888888887653
No 140
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.40 E-value=1.5e+02 Score=29.15 Aligned_cols=9 Identities=44% Similarity=0.501 Sum_probs=3.3
Q ss_pred HhHHHHHHH
Q 019570 140 HDNEALLKE 148 (339)
Q Consensus 140 ~ene~L~~E 148 (339)
.+.+.++++
T Consensus 544 ~~~~~le~~ 552 (597)
T 3oja_B 544 QENIALEKQ 552 (597)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHHHH
Confidence 333333333
No 141
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.94 E-value=2.4e+02 Score=23.08 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.6
Q ss_pred hHHhHHHHHHHHHHHHHHhh
Q 019570 138 LQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 138 l~~ene~L~~E~~~Lk~~l~ 157 (339)
|+.+...|+..+..|+.++.
T Consensus 40 Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555544444443
No 142
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=24.92 E-value=60 Score=23.10 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
+++.+..+|...|..... ....-.++|..+|++...|+.|...-+.+.+
T Consensus 11 L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 788999999888752110 0123458899999999999988754444443
No 143
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.56 E-value=1.8e+02 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=17.6
Q ss_pred hHHHHhhhhhhHHhHHHHHHHHHHHHHH
Q 019570 128 YDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 128 ~d~Lk~e~~sl~~ene~L~~E~~~Lk~~ 155 (339)
+..|......++.++..|+.++.+|+.-
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666777777777776653
No 144
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.47 E-value=50 Score=24.64 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
.+++.+..+|.-++. .+ .-.++|..+|++...|+.+...-|.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 489999999977432 22 23578999999999999887755555543
No 145
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.39 E-value=1.9e+02 Score=20.55 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHH
Q 019570 117 LERDYGVLKANYDALKLNYDSLQHDNEALLKEIREL 152 (339)
Q Consensus 117 ~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~L 152 (339)
++.+...|.+.+..|-.--..-+.+...|.+++++|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555566666665554
No 146
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=24.32 E-value=42 Score=23.60 Aligned_cols=49 Identities=8% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhh
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~K 113 (339)
+++.+..+|...|....+- ...-.++|..+|++...|+.+...-+.+.+
T Consensus 6 L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888888888877321111 123467899999999999988654444443
No 147
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.02 E-value=94 Score=23.37 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=21.2
Q ss_pred hHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 128 YDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 128 ~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+..|+.....+..+.+.|+.++..|+.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677778888888888887764
No 148
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.99 E-value=92 Score=27.53 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.4
Q ss_pred CcCCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhh
Q 019570 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 62 rRfT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNR 108 (339)
|.++..++..|. .....+.+|++-.+|+..+.++
T Consensus 43 R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 43 RYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC
T ss_pred cccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC
Confidence 448999988884 3333588899988888888765
No 149
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.83 E-value=1.3e+02 Score=20.21 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=19.9
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 133 LNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 133 ~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
...+.|..++..|..|+.+||..+.+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 34456677889999999999987653
No 150
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.21 E-value=2.2e+02 Score=22.25 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=22.0
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhh
Q 019570 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 118 eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~ 158 (339)
.++....++.+-.+...-......|+.|..|++.|+.++.+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444434333334445666777777777766654
No 151
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.17 E-value=51 Score=24.51 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++.+..+|...|-.... ....-.++|..+|++...|+.|...-+.+.|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788888988887752100 11234678999999999999987644444443
No 152
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.11 E-value=51 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHHhCCCccceeehhhhhHHHhhH
Q 019570 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~eQl~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVkVWFQNRRaK~Kr 114 (339)
+++.+..+|.-.|.. ...-.++|..+|++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYE-----ELPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTS-----CCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 777777777776632 2235688999999999998887654444443
No 153
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.55 E-value=93 Score=29.03 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhhhh
Q 019570 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (339)
Q Consensus 118 eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~~~ 160 (339)
+..+..++..++.|...+..|..+...++.|+.+||+++..-.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778888999999999999999999999999999886543
No 154
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=21.87 E-value=2.6e+02 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHhhHHHHHHHHHHHhhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhhhhh
Q 019570 110 ARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEEN 160 (339)
Q Consensus 110 aK~Krkq~eke~~~LKa~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~~~~ 160 (339)
-|.+-...++.+..++..+.....+.+.++.....|..++..|+..|.+..
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666667777777777777777777776553
No 155
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.68 E-value=2.5e+02 Score=25.00 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=25.4
Q ss_pred hHHHhhHHHHHHHHHHHhhhhHHHHhh----hhhhHHhHHHHHHHHHHHHHHhh
Q 019570 108 RRARWKTKQLERDYGVLKANYDALKLN----YDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 108 RRaK~Krkq~eke~~~LKa~~d~Lk~e----~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+-.+.+..++..+...||.-+.....+ -..|+.+...|+..+..|+.++.
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555444 33445555555555555555554
No 156
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.95 E-value=1.6e+02 Score=22.99 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=21.1
Q ss_pred hhhhHHHHhhhhhhHHhHHHHHHHHHHHHHHhh
Q 019570 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 125 Ka~~d~Lk~e~~sl~~ene~L~~E~~~Lk~~l~ 157 (339)
+.....+......|..+|..|+.++..|+..+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666677777777777777766554
No 157
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.78 E-value=91 Score=19.43 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=7.8
Q ss_pred HhHHHHHHHHHHHHHHh
Q 019570 140 HDNEALLKEIRELKSKL 156 (339)
Q Consensus 140 ~ene~L~~E~~~Lk~~l 156 (339)
-||..|...+..||.++
T Consensus 7 fendaleqkiaalkqki 23 (28)
T 3ra3_A 7 FENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHH
Confidence 34444444444444443
No 158
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.54 E-value=3.5e+02 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHhhh
Q 019570 64 LSVDQVKALEKNFE 77 (339)
Q Consensus 64 fT~eQl~~LE~~F~ 77 (339)
+|++|...+.+.++
T Consensus 68 LT~EQq~ql~~I~~ 81 (175)
T 3lay_A 68 LTTEQQATAQKIYD 81 (175)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 67777777665554
Done!