Query 019572
Match_columns 339
No_of_seqs 254 out of 1499
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:50:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2964 Arginase family protei 100.0 3.9E-81 8.5E-86 568.8 22.3 332 1-339 8-357 (361)
2 PLN02615 arginase 100.0 6.4E-78 1.4E-82 578.7 31.7 336 4-339 3-338 (338)
3 COG0010 SpeB Arginase/agmatina 100.0 7.2E-62 1.6E-66 462.8 30.2 291 32-339 2-303 (305)
4 PRK13775 formimidoylglutamase; 100.0 1.4E-61 3E-66 465.2 29.1 288 27-339 20-326 (328)
5 PRK02190 agmatinase; Provision 100.0 1.5E-60 3.2E-65 453.4 29.5 285 31-338 5-296 (301)
6 TIGR01230 agmatinase agmatinas 100.0 4.2E-60 9.1E-65 445.0 29.3 259 60-335 13-274 (275)
7 TIGR01227 hutG formimidoylglut 100.0 1.8E-59 3.9E-64 447.1 29.7 259 59-334 34-306 (307)
8 PRK13774 formimidoylglutamase; 100.0 1.7E-59 3.7E-64 447.6 28.9 254 60-334 44-310 (311)
9 PRK13772 formimidoylglutamase; 100.0 2.4E-59 5.2E-64 447.2 28.7 256 59-334 40-314 (314)
10 PRK01722 formimidoylglutamase; 100.0 2.4E-59 5.1E-64 448.8 28.4 263 60-339 41-318 (320)
11 PRK13776 formimidoylglutamase; 100.0 7E-59 1.5E-63 444.5 29.0 256 60-335 42-316 (318)
12 PRK13773 formimidoylglutamase; 100.0 1.5E-58 3.3E-63 443.4 29.0 258 60-337 44-319 (324)
13 PF00491 Arginase: Arginase fa 100.0 1.3E-58 2.7E-63 435.4 23.8 266 60-334 1-276 (277)
14 TIGR01229 rocF_arginase argina 100.0 3.6E-56 7.8E-61 423.1 25.8 261 63-336 1-297 (300)
15 KOG2965 Arginase [Amino acid t 100.0 4.4E-44 9.5E-49 321.8 24.6 260 61-333 16-307 (318)
16 PF12640 UPF0489: UPF0489 doma 95.9 0.047 1E-06 47.2 8.6 62 157-218 6-91 (162)
17 KOG1384 tRNA delta(2)-isopente 57.5 19 0.00041 35.0 4.9 39 128-167 77-115 (348)
18 PRK02240 GTP cyclohydrolase II 50.6 35 0.00076 31.9 5.4 52 111-162 9-60 (254)
19 cd06843 PLPDE_III_PvsE_like Ty 46.5 2.9E+02 0.0062 26.9 14.9 108 201-309 59-172 (377)
20 COG2515 Acd 1-aminocyclopropan 38.7 2.7E+02 0.0058 26.9 9.4 93 136-236 52-147 (323)
21 TIGR03822 AblA_like_2 lysine-2 38.2 3.7E+02 0.008 25.8 16.1 158 134-308 122-299 (321)
22 PF01715 IPPT: IPP transferase 33.3 58 0.0013 30.3 4.1 40 127-167 36-75 (253)
23 PF05198 IF3_N: Translation in 32.1 23 0.00049 26.8 1.0 28 285-317 26-53 (76)
24 cd06831 PLPDE_III_ODC_like_AZI 31.4 5.2E+02 0.011 25.5 11.5 103 198-309 66-172 (394)
25 COG0019 LysA Diaminopimelate d 30.4 5.5E+02 0.012 25.5 15.1 116 196-317 80-205 (394)
26 TIGR00287 cas1 CRISPR-associat 28.8 60 0.0013 31.1 3.5 34 151-187 37-70 (323)
27 KOG4518 Hydroxypyruvate isomer 28.0 1E+02 0.0023 27.9 4.5 44 274-320 207-252 (264)
28 PLN02748 tRNA dimethylallyltra 26.5 74 0.0016 32.5 3.8 41 127-168 91-131 (468)
29 CHL00199 infC translation init 25.9 58 0.0012 28.9 2.5 29 284-317 37-65 (182)
30 TIGR00168 infC translation ini 24.4 71 0.0015 27.8 2.8 29 284-317 20-48 (165)
31 COG0290 InfC Translation initi 24.4 63 0.0014 28.4 2.4 29 284-317 31-59 (176)
32 TIGR02810 agaZ_gatZ D-tagatose 24.3 3.9E+02 0.0084 26.9 8.2 92 126-221 57-172 (420)
33 COG3969 Predicted phosphoadeno 23.7 2.4E+02 0.0053 27.7 6.4 54 130-183 10-66 (407)
34 COG2040 MHT1 Homocysteine/sele 23.7 3.5E+02 0.0076 25.9 7.4 77 226-314 139-218 (300)
35 TIGR03638 cas1_ECOLI CRISPR-as 23.2 94 0.002 29.1 3.6 32 151-185 47-78 (269)
36 COG0324 MiaA tRNA delta(2)-iso 23.2 70 0.0015 30.8 2.8 41 127-168 72-112 (308)
37 PRK15052 D-tagatose-1,6-bispho 23.2 4.2E+02 0.0091 26.7 8.2 92 126-221 58-172 (421)
38 cd06285 PBP1_LacI_like_7 Ligan 21.8 1.8E+02 0.0038 26.0 5.1 50 138-187 164-216 (265)
39 PF01867 Cas_Cas1: CRISPR asso 21.3 89 0.0019 29.2 3.1 34 151-187 37-70 (282)
40 COG0646 MetH Methionine syntha 20.9 2.2E+02 0.0048 27.3 5.5 37 134-172 273-309 (311)
41 COG0135 TrpF Phosphoribosylant 20.6 90 0.002 28.3 2.8 49 264-315 141-192 (208)
42 TIGR03641 cas1_HMARI CRISPR-as 20.2 1.1E+02 0.0023 29.6 3.4 34 151-187 36-69 (322)
43 PF08013 Tagatose_6_P_K: Tagat 20.1 1.6E+02 0.0034 29.6 4.6 55 151-207 84-150 (424)
No 1
>KOG2964 consensus Arginase family protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-81 Score=568.82 Aligned_cols=332 Identities=41% Similarity=0.620 Sum_probs=295.8
Q ss_pred CccccccccchhhhhhcccC-----CCHHHHHhccccccccccchhhhhhhhhhhhhhhcCCCcccEEEEEeeCCCCCCC
Q 019572 1 MSAMIGKRGVHYLQKLKSAN-----IPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSF 75 (339)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~~r~~~~~~~~~~~~~~~~~~~i~ilGvP~d~g~s~ 75 (339)
||-.+|..|++|.+++..+. +|.+..|+.|+|...+..|.++...+|++++++...+++.|+++||||||+|+||
T Consensus 8 ~~~~~G~~g~~~~~~l~~~rt~~~~~~d~~~e~~~~~~~da~~sgI~t~~rLp~~~v~~~~~e~~d~AfiGvPldtgtS~ 87 (361)
T KOG2964|consen 8 LSRGIGGLGARYAHRLEPARTQSRAVSDDSREQDQSREFDASYSGIATFARLPGVLVLLSGSEDFDIAFIGVPLDTGTSY 87 (361)
T ss_pred hhhcccccccchhhhhccccccccccCcccccCCCCceeehhhhhhHHhhcCCceEEEecCCCccceEEeccccCCCccC
Confidence 46678889999988877654 6788999999998887778777777888888988878889999999999999999
Q ss_pred CCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHh------cCCC
Q 019572 76 LQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVME------EDPL 149 (339)
Q Consensus 76 r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~------~~~~ 149 (339)
|||+||||..||+++|+.+++..+..+..+.+..+++|||||+++.++ ...+.+++++.+.+++. .++.
T Consensus 88 rpGarFgP~~IRE~s~~~~t~n~s~e~~pfksw~~l~D~GDIpV~~yd-----~~~a~~q~~~~y~~l~~rkg~a~~~~~ 162 (361)
T KOG2964|consen 88 RPGARFGPSRIREASRRLNTVNPSLEGNPFKSWAKLVDCGDIPVTSYD-----NQGADDQIEEAYISLLARKGVAKDGPV 162 (361)
T ss_pred CCccccCCchhhhhhhhhcccCCCcCCccccChhhhcccCCcchhhhh-----hhhHHHHHHHHHHHHHHhhhhccCCce
Confidence 999999999999999999888777667777777889999999998763 33444555544444433 4557
Q ss_pred eeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCCCCCc--EEEEccCCCCHH--
Q 019572 150 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARR--LLQVGIRSITKE-- 225 (339)
Q Consensus 150 ~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~~~~--~v~iGiR~~~~~-- 225 (339)
.|++|||||+|+||++|+++++|| |++|||||||+|+|++.+|+.++||++|++++++|+.++ .+|+|||+...+
T Consensus 163 ~PltLGGDHtI~yPilRAvs~k~G-PV~ilH~DaH~Dt~d~~~g~~~~Hgs~F~r~~~eGl~~~~~~iq~GIRt~~s~~~ 241 (361)
T KOG2964|consen 163 LPLTLGGDHTIVYPILRAVSRKYG-PVSILHFDAHLDTWDPKEGGKINHGSYFYRASQEGLASNDRNIQAGIRTILSGLS 241 (361)
T ss_pred eeeeecCCceeeHHHHHHHHHhhC-CceEEEeccCccccCccccCccccchHHHHHhhcccccCCceeeeeeeecccCcC
Confidence 899999999999999999999997 999999999999999999999999999999999998766 999999997655
Q ss_pred HHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhC-C
Q 019572 226 GREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-D 302 (339)
Q Consensus 226 e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~~-~ 302 (339)
.+++-++.|++++.++++++. ..++++++...|++.||||||||||||+|||||||||+||+|++|++.|||.+.+ +
T Consensus 242 ~ye~d~~~Gf~~ieare~~~~gi~~i~e~ir~~~G~k~vYiSiDID~LDPafAPgtgtpE~gGlt~re~l~ILrglqGl~ 321 (361)
T KOG2964|consen 242 DYEQDKRCGFEIIEAREIDKIGIDPIVERIRQRVGDKLVYISIDIDVLDPAFAPGTGTPETGGLTTREMLNILRGLQGLN 321 (361)
T ss_pred chhhccccCeEEEEeeehhhhhhHHHHHHHHHhcCCceEEEEEeecccCcccCCCCCCCCCCCcCHHHHHHHHhhCcccc
Confidence 788889999999999999987 6789999988999999999999999999999999999999999999999999987 9
Q ss_pred eeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHHhhhC
Q 019572 303 VVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 339 (339)
Q Consensus 303 vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~~~~~ 339 (339)
+||+|||||||+|| .+++|+++||++++|++++|+|
T Consensus 322 lVGaDvVEvsP~yD-~ae~Tal~AA~llfEi~s~m~K 357 (361)
T KOG2964|consen 322 LVGADVVEVSPPYD-VAEMTALAAADLLFEILSKMVK 357 (361)
T ss_pred ccccceEEecCccc-hhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999999 5899999999999999999998
No 2
>PLN02615 arginase
Probab=100.00 E-value=6.4e-78 Score=578.67 Aligned_cols=336 Identities=91% Similarity=1.387 Sum_probs=297.1
Q ss_pred ccccccchhhhhhcccCCCHHHHHhccccccccccchhhhhhhhhhhhhhhcCCCcccEEEEEeeCCCCCCCCCCccchH
Q 019572 4 MIGKRGVHYLQKLKSANIPIAVIEKGQNRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAP 83 (339)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~r~~~~~~~~~~~~~~~~~~~i~ilGvP~d~g~s~r~Ga~~gP 83 (339)
+++++|+|||||+++++++.+.++..|++..++..||++.+..||+++.+..++++++++|+|||||.+++||+|+|+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ilGvP~D~~~s~r~G~r~gP 82 (338)
T PLN02615 3 AIGRRGIHYLQRLIAASVPASLLEKGQNRVIDASLTLIRERAKLKGELVRALGGAKASSCLLGVPLGHNSSFLQGPAFAP 82 (338)
T ss_pred hHHHHHHHHHHHHHHHhccHHHhhcCCCcccccchhhccCcccccccccCCcccCCCCEEEEeCCCCCCCCCCCchhhhH
Confidence 57999999999999999999999999888887799999999889999888887556899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhH
Q 019572 84 PRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFP 163 (339)
Q Consensus 84 ~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~ 163 (339)
++||++++....+...+.+.++.+...++|+||+++.+.+..+.+.+++++++++.++.++++++.+||+||||||+|||
T Consensus 83 ~aIR~as~~~~~~~~~~~~~~~~~~~~i~D~GDv~v~~~~~~g~~~~~~~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~ 162 (338)
T PLN02615 83 PRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKLVMEEEPLRPLVLGGDHSISYP 162 (338)
T ss_pred HHHHHHHhcCccCCccccCCChhhcCeeEecCCCcCCcccccccCHHHHHHHHHHHHHHHHhcCCCceEEECcchHhhHH
Confidence 99999996543333234566665554489999999865433333679999999999999998654789999999999999
Q ss_pred hHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCCCCCcEEEEccCCCCHHHHHHHHHcCceEEEcccc
Q 019572 164 VIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTF 243 (339)
Q Consensus 164 ~l~al~~~~~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~ 243 (339)
+++++.++++++++|||||||+|++++++|+.++|||||+++++.+..++++|||+|+..++|++++++.|++++++.++
T Consensus 163 ~iral~~~~~~~v~vI~fDAH~Dl~~~~~g~~~shgs~~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~ 242 (338)
T PLN02615 163 VVRAVSEKLGGPVDILHLDAHPDIYHAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTF 242 (338)
T ss_pred HHHHHHHHhCCCeEEEEEecCcCCCCCCCCCCcCchhHHHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHh
Confidence 99999988866899999999999999988999999999999999877789999999999999999999999999999888
Q ss_pred cchHHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCCeeEEEEeeeCCCCCCCCChHH
Q 019572 244 SRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTA 323 (339)
Q Consensus 244 ~~~~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~~~vvG~DivEv~P~~D~~~~~Ta 323 (339)
.+..++++.++...+.++||||||||||||+++|||+||+||||+++|++++++.+.++|+|+||||++|.+|..+++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgtpepgGLt~~e~l~il~~l~~~vvG~DvvEv~P~~D~~~~~Ta 322 (338)
T PLN02615 243 SKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQGDVVGADVVEFNPQRDTVDGMTA 322 (338)
T ss_pred hhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCCCCCCCCCHHHHHHHHHHhhCCEEEEEEEEECCCCCCCCChHH
Confidence 65455677665334557899999999999999999999999999999999999999779999999999999995357999
Q ss_pred HHHHHHHHHHHHhhhC
Q 019572 324 MVAAKLVRELTAKISK 339 (339)
Q Consensus 324 ~laA~li~~~l~~~~~ 339 (339)
++||++++++|.+|+|
T Consensus 323 ~laA~li~e~l~~~~~ 338 (338)
T PLN02615 323 MVAAKLVRELTAKMSK 338 (338)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999987
No 3
>COG0010 SpeB Arginase/agmatinase/formimionoglutamate hydrolase, arginase family [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-62 Score=462.83 Aligned_cols=291 Identities=35% Similarity=0.565 Sum_probs=244.0
Q ss_pred cccccccchhhhhhhhhhhhhhhcCCCcccEEEEEeeCCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccc
Q 019572 32 RVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVL 111 (339)
Q Consensus 32 ~~~~~~~t~~r~~~~~~~~~~~~~~~~~~~i~ilGvP~d~g~s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i 111 (339)
++.+ +.||++.++.++ ... ..+++|+|+|+|.|+++|+|++|||++||+++.... +.. .+..++....++
T Consensus 2 ~~~~-~~~~~~~~~~~~------~~~-~~~~~i~g~p~d~~~s~r~Ga~~GP~air~a~~~~~-~~~-~~~~~~~~~~~~ 71 (305)
T COG0010 2 RLSG-IFTFLRLPDSLN------GYE-DADIAIIGVPFDGGTSYRPGARFGPDAIREASLNLE-YNV-PLDGDLVEALKI 71 (305)
T ss_pred Cccc-ccchhccccccC------chh-cCceEEEeeccccCcCCCcchhhCHHHHHHHhhhcc-cCc-ccccCcccccCc
Confidence 4455 889998887432 221 479999999999999999999999999999988654 211 123333332358
Q ss_pred cccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCC
Q 019572 112 TDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF 191 (339)
Q Consensus 112 ~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~ 191 (339)
+|+||+..... +.+..++.+++.+.+++.++ .+||+||||||||+|.++++.++++.+++|||||||+|+|+++
T Consensus 72 ~d~gd~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~pi~lGGDHsit~~~~~a~~~~~~~~~gvI~iDAH~Dl~~~~ 145 (305)
T COG0010 72 ADLGDIELNGG-----DLEDAVDAIEEAVAELLSAG-AFPIVLGGDHSITLGTVRALARKYGGPLGVIWIDAHADLRTPY 145 (305)
T ss_pred cCCCCccCCcc-----cHHHHHHHHHHHHHHHHhcC-CeeEEECCcchhhHHHHHHHHHhhCCceEEEEEecCccCCCCC
Confidence 99999987642 66889999999999999887 7999999999999999999999875589999999999999988
Q ss_pred CCCCCCChhHHHHHHhCCC----CCcEEEEccCCCCHHH-HHHHHHcCceEEEcccccch---HHHHHHhhcc-CCcceE
Q 019572 192 EGNKYSHASSFARIMEGGY----ARRLLQVGIRSITKEG-REQGKRFGVEQYEMRTFSRD---RQFLENLKLG-EGVKGV 262 (339)
Q Consensus 192 ~g~~~~hgs~~~~~~~~g~----~~~~v~iGiR~~~~~e-~~~~~~~g~~~~~~~~~~~~---~~~l~~l~~~-~~~~~v 262 (339)
+|+.++|||||+++++++. +++++|||+|+.+++| .+.+++.|+++++++++... ..+.+.++.. ...++|
T Consensus 146 ~g~~~~Hg~p~r~~~e~~~~~~~p~~~v~iGiR~~~~~e~~~~~~~~gi~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~v 225 (305)
T COG0010 146 SGSGNSHGTPLRRALEEGLIDGGPENVVQIGIRSVDPEERAAVARERGIRVLTARDVDELGLVDVIEEAIDELKGDGDPV 225 (305)
T ss_pred CCCCCcccCHHHHHHhccccCCCcceEEEEEeccCChHHHHHHHHhcCCEEEEHHHHHHhcCHHHHHHHHHHhhCCCCeE
Confidence 8999999999999998874 3689999999998888 55788999999999988652 2233333311 245779
Q ss_pred EEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHHhhhC
Q 019572 263 YISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 339 (339)
Q Consensus 263 YlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~~~~~ 339 (339)
|||||+|||||++|||||||+|||||++|++.+++.+. .+++|+||||+||.+|. +++|+.+||+++++++..+.+
T Consensus 226 ylSiDiD~lDPa~aPgvgtp~~gGlt~~e~~~~~~~l~~~~~vvg~DvvEv~P~~D~-~~~Ta~~aa~l~~~ll~~~~~ 303 (305)
T COG0010 226 YLSIDLDVLDPAFAPGVGTPEPGGLTFRELLDLLERLLKSGKVVGFDVVEVNPALDI-SGRTARLAARLIAELLGKRAL 303 (305)
T ss_pred EEEEecCCcCcccCCCCCCCCCCCCCHHHHHHHHHHHhccCCEEEEEEEEECCCCCC-CccHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999884 49999999999999996 789999999999999988753
No 4
>PRK13775 formimidoylglutamase; Provisional
Probab=100.00 E-value=1.4e-61 Score=465.17 Aligned_cols=288 Identities=21% Similarity=0.332 Sum_probs=237.7
Q ss_pred Hhccccccccccchhhhh--hhhhhhhhhhcCCCcccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCccc
Q 019572 27 EKGQNRVIDASLTLIRER--AKLKGELVRALGGAVASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEE 101 (339)
Q Consensus 27 ~~~~~~~~~~~~t~~r~~--~~~~~~~~~~~~~~~~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~ 101 (339)
...+.++.+ +.||+|++ + .+++.+ ++++|+|+|||.|+ ++|+|+++||++||+++..+.. ..
T Consensus 20 ~~~~~~~~~-~~~~~~~~~~~------~~~~~~--~~v~iiGvP~d~g~~~n~~r~Ga~~gP~aIR~~l~~~~~----~~ 86 (328)
T PRK13775 20 DLYTAKWGM-VMTFLDLNDSS------LTPFEG--THFALIGFKSDKGVYINNGRVGAVESPAAIRTQLAKFPW----HL 86 (328)
T ss_pred Ccccceeee-ccchhcccccc------cccccC--CCEEEEEeccccccCCCCCCcChhHhHHHHHHHHhcccc----cc
Confidence 444566777 88999875 4 334545 79999999999998 7899999999999999764321 11
Q ss_pred CCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcC--CCeEEE
Q 019572 102 GKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG--GPVDVL 179 (339)
Q Consensus 102 g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~--~~l~vI 179 (339)
+. ...++|+|||++... +.+++++++++.++++++++ .+||+||||||+|||.++|+.++++ ++++||
T Consensus 87 ~~----~~~i~D~Gdv~~~~~-----~~~~~~~~l~~~v~~~~~~g-~~PivlGGdHsit~g~~~g~~~~~~~~~~~gvI 156 (328)
T PRK13775 87 GN----QVMVYDVGNIDGPNR-----SLEQLQNSLSKAIKRMCDLN-LKPIVLGGGHETAYGHYLGLRQSLSPSDDLAVI 156 (328)
T ss_pred CC----CCEEEeCCCcCCCCc-----CHHHHHHHHHHHHHHHHhCC-CeEEEEcCcHHHHHHHHHHHHHhcccCCCeEEE
Confidence 11 135899999987542 67899999999999999887 8999999999999999999998762 589999
Q ss_pred EEecCCCCCCCCCCCCCCChhHHHHHHhCCC----CCcEEEEccCCCCH--HHHHHH-HHcCceEEEcccccch--HHHH
Q 019572 180 HLDAHPDIYDAFEGNKYSHASSFARIMEGGY----ARRLLQVGIRSITK--EGREQG-KRFGVEQYEMRTFSRD--RQFL 250 (339)
Q Consensus 180 ~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~----~~~~v~iGiR~~~~--~e~~~~-~~~g~~~~~~~~~~~~--~~~l 250 (339)
|||||+|+++ +.++.++||++|+++++++. ..+++|||+|+... +++++. ++.|++++++.++.+. ..++
T Consensus 157 ~~DAH~Dlr~-~~~~~~shg~~~~~~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~~gi~~~~~~~i~~~g~~~v~ 235 (328)
T PRK13775 157 NMDAHFDLRP-YDQTGPNSGTGFRQMFDDAVADKRLFKYFVLGIQEHNNNLFLFDFVAKSKGIQFLTGQDIYQMGHQKVC 235 (328)
T ss_pred EeccCcCCCC-CCCCCCCCCcHHHHHHHhhcccCCCceEEEEEEeCCCCCHHHHHHHHHHcCCEEEEHHHhhhcCHHHHH
Confidence 9999999996 55677899999999987643 34789999998643 577764 5589999999998653 3344
Q ss_pred HHhhc-cCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHH
Q 019572 251 ENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAA 327 (339)
Q Consensus 251 ~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA 327 (339)
+.+.. ..+.++||||||||+|||++|||||||+|||||++|++.+++.+. .+++|+||||+||.+|. +++|+.+||
T Consensus 236 ~~~~~~~~~~~~vyvS~DiD~lDps~aPGtgtP~pgGLt~~e~~~il~~l~~~~~vvg~DivEv~P~~D~-~~~Ta~laa 314 (328)
T PRK13775 236 RAIDRFLEGQERVYLTIDMDCFSVGAAPGVSAIQSLGVDPNLAVLVLQHIAASGKLVGFDVVEVSPPHDI-DNHTANLAA 314 (328)
T ss_pred HHHHHHHhcCCeEEEEEEcCccCcccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCEEEEEEEEECCCCCC-CCcHHHHHH
Confidence 44421 124568999999999999999999999999999999999999983 48999999999999997 789999999
Q ss_pred HHHHHHHHhhhC
Q 019572 328 KLVRELTAKISK 339 (339)
Q Consensus 328 ~li~~~l~~~~~ 339 (339)
+++|++|..|+|
T Consensus 315 ~li~~~l~~~~~ 326 (328)
T PRK13775 315 TFIFYLVQIMAQ 326 (328)
T ss_pred HHHHHHHHHHhc
Confidence 999999998875
No 5
>PRK02190 agmatinase; Provisional
Probab=100.00 E-value=1.5e-60 Score=453.41 Aligned_cols=285 Identities=29% Similarity=0.464 Sum_probs=234.1
Q ss_pred ccccccccchhhhhhhhhhhhhhhcCCCcccEEEEEeeCCCCCCCCCCccchHHHHHHHHhcCC--CCCCcccCCCCCCC
Q 019572 31 NRVIDASLTLIRERAKLKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGS--TNSTTEEGKELNDP 108 (339)
Q Consensus 31 ~~~~~~~~t~~r~~~~~~~~~~~~~~~~~~~i~ilGvP~d~g~s~r~Ga~~gP~aIR~a~~~~~--~~~~~~~g~~~~~~ 108 (339)
+.+.+ +.||++.+... .++.++ ++++|+|+|||.|+++++|+++||++||++++.+. .+.. .+..++.+.
T Consensus 5 ~~~~~-~~~f~~~~~~~----~~~~~~--~~v~iiGvP~d~g~~~~~G~~~gP~aiR~as~~~~~~~~~~-~~~~~~~~~ 76 (301)
T PRK02190 5 SLYSN-AFSFLRRPLNF----TPYLSG--ADWVVTGVPFDMATSGRPGARFGPAAIRQASTNLAWEDRRY-PWNFDLFER 76 (301)
T ss_pred CcCCC-CcccccCCccC----CCccCC--CCEEEEecccCCCCCCCCchhhhHHHHHHHHhcccccccCC-CcccCcccC
Confidence 33444 66888875310 234445 89999999999999999999999999999987643 1111 122233334
Q ss_pred ccccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCC
Q 019572 109 RVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIY 188 (339)
Q Consensus 109 ~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~ 188 (339)
..++|+||++.... +.++++++|++.++++++++ .+||+||||||+|||.++++.++++ +++|||||||+|++
T Consensus 77 ~~i~D~Gdv~~~~~-----~~~~~~~~i~~~v~~~~~~g-~~pi~lGGdHsit~~~~~a~~~~~~-~~~vi~~DAH~D~~ 149 (301)
T PRK02190 77 LAVVDYGDLVFDYG-----DAEDFPEALEAHAEKILAAG-KRMLTLGGDHFITLPLLRAHAKHFG-PLALVHFDAHTDTW 149 (301)
T ss_pred ceEEecCCCcCCCC-----CHHHHHHHHHHHHHHHHhCC-CeEEEECCcchhhHHHHHHHHHHcC-CeEEEEEecCCCCC
Confidence 56899999987532 57899999999999999877 7999999999999999999998874 99999999999999
Q ss_pred CCCCCCCCCChhHHHHHHhCCC--CCcEEEEccCCCCHHHHHHHHHcCceEEEcccccch--HHHHHHhhccCCcceEEE
Q 019572 189 DAFEGNKYSHASSFARIMEGGY--ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKLGEGVKGVYI 264 (339)
Q Consensus 189 ~~~~g~~~~hgs~~~~~~~~g~--~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~~~~~~~vYl 264 (339)
+++. +.++|||||+++++++. +++++|||+|+ ++.++.|++++++.++.+. .++++.+....+..+|||
T Consensus 150 ~~~~-~~~~hg~~~~~~~~~~~v~~~~vv~iGiR~------~~~~~~gi~~~~~~~~~~~g~~~~~~~~~~~l~~~~vyi 222 (301)
T PRK02190 150 ADGG-SRIDHGTMFYHAPKEGLIDPAHSVQIGIRT------EYDKDNGFTVLDARQVNDRGVDAIIAQIKQIVGDMPVYL 222 (301)
T ss_pred CCcc-CCCCCchHHHHHhcCCCcCCCcEEEEECCC------chHHHCCCEEEEHHHhhccCHHHHHHHHHHHhCCCEEEE
Confidence 9876 67899999999998765 58999999998 2456779999999887543 344454432234578999
Q ss_pred EEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhC-CeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHHhhh
Q 019572 265 SVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQA-DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKIS 338 (339)
Q Consensus 265 S~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~~-~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~~~~ 338 (339)
|||+|||||+++|||++|+||||+++|++.+++.+.+ +|+|+||||++|.+|. +++|+.+||+++++++..++
T Consensus 223 SiDiDvlDps~aPg~~~p~pgGl~~~e~~~il~~i~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~~~~ 296 (301)
T PRK02190 223 TFDIDCLDPAFAPGTGTPVIGGLTSAQALKILRGLKGLNIVGMDVVEVAPAYDH-AEITALAAATLALEMLCLQA 296 (301)
T ss_pred EEeecccCcccCCCCCCCCCCCcCHHHHHHHHHHHhcCCeEEEEeeeecCCCCC-CCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864 8999999999999997 78999999999999997654
No 6
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=100.00 E-value=4.2e-60 Score=445.02 Aligned_cols=259 Identities=35% Similarity=0.595 Sum_probs=224.1
Q ss_pred ccEEEEEeeCCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITES 139 (339)
Q Consensus 60 ~~i~ilGvP~d~g~s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~ 139 (339)
++++|+|+|||.|+++|+|+++||++||+++.....+. .+.+.++.. ..++|+||+.+.. .+.++++++|++.
T Consensus 13 ~~v~viGvP~d~g~~~~~G~~~gP~aiR~a~~~~~~~~-~~~~~~~~~-~~i~D~Gdv~~~~-----~~~~~~~~~i~~~ 85 (275)
T TIGR01230 13 ADWVIYGIPYDATTSYRPGSRHGPNAIREASWNLEWYS-NRLDRDLAM-LNVVDAGDLPLAF-----GDAREMFEKIQEH 85 (275)
T ss_pred CCEEEECCCCCCCCCCCCchhhhHHHHHHHHhcccccC-cccCCCccc-ceEeecCCCCCCC-----CCHHHHHHHHHHH
Confidence 89999999999999999999999999999987644332 233444433 4589999998742 2678999999999
Q ss_pred HHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCCCCCcEEEEcc
Q 019572 140 VKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGI 219 (339)
Q Consensus 140 v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~~~~~v~iGi 219 (339)
+.++++++ .+||++|||||+|||+++++.+++ ++++|||||||+|+++++.|..++||||++++++.+ .+++|||+
T Consensus 86 v~~~~~~~-~~pi~lGGdHsis~~~i~al~~~~-~~~~vI~~DAH~D~~~~~~g~~~~~~~~~~~~~~~~--~~iv~iGi 161 (275)
T TIGR01230 86 AEEFLEEG-KFPVAIGGEHSITLPVIRAMAKKF-GKFAVVHFDAHTDLRDEFDGGTLNHACPMRRVIELG--LNVVQFGI 161 (275)
T ss_pred HHHHHhcC-CeEEEecCcchhhHHHHHHHHHhc-CCeEEEEEecccccccccCCCccccHhHHHHHhhCC--CCEEEEEe
Confidence 99999877 799999999999999999999987 489999999999999988888889999999999864 59999999
Q ss_pred CCCCHHHHHHHHHcCceEEEcccccch-HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 019572 220 RSITKEGREQGKRFGVEQYEMRTFSRD-RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHN 298 (339)
Q Consensus 220 R~~~~~e~~~~~~~g~~~~~~~~~~~~-~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~ 298 (339)
|+++++|++++++.|+.+++ .++.+. .++++.+ +..+||||||+|||||+++|||++|+||||+++|++++++.
T Consensus 162 R~~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~----~~~~vyis~DiDvlDps~aPg~~~p~pgGl~~~e~~~~~~~ 236 (275)
T TIGR01230 162 RSGFKEENDFARENNIQVLK-REVDDVIAEVKQKV----GDKPVYVTIDIDVLDPAFAPGTGTPEPGGLTSDELINFFVR 236 (275)
T ss_pred CCCChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHh----CCCceEEEEeccccCcccCCCCCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999998 666432 2333332 34679999999999999999999999999999999998887
Q ss_pred h-h-CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHH
Q 019572 299 L-Q-ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 335 (339)
Q Consensus 299 l-~-~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~ 335 (339)
+ . .+++|+||||+||.+|. +++|+++||+++++++.
T Consensus 237 ~~~~~~v~g~DivE~~P~~D~-~~~t~~~aa~li~~~l~ 274 (275)
T TIGR01230 237 ALKDDNVVGFDVVEVAPVYDQ-SEVTALTAAKIALEMLL 274 (275)
T ss_pred HhcCCCEEEEEEEEeCCCCCC-cchHHHHHHHHHHHHhc
Confidence 6 3 48999999999999997 78999999999999874
No 7
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=100.00 E-value=1.8e-59 Score=447.10 Aligned_cols=259 Identities=27% Similarity=0.429 Sum_probs=222.1
Q ss_pred cccEEEEEeeCCCCCC---CCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHH
Q 019572 59 VASTSLLGVPLGHNSS---FLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 135 (339)
Q Consensus 59 ~~~i~ilGvP~d~g~s---~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~ 135 (339)
+++++|+|+|||.|++ +|+|+++||++||+++..+..+ . ....++|+|||++... +.++++++
T Consensus 34 ~~~i~iiGvP~d~g~~~n~~r~G~~~gP~aiR~a~~~~~~~-----~----~~~~i~D~Gdv~~~~~-----~~~~~~~~ 99 (307)
T TIGR01227 34 EKGVALIGFPLDKGVIRNKGRRGARHGPSAIRQALAHLGDW-----H----VSELLYDLGDIVIHGD-----DLEDTQHE 99 (307)
T ss_pred CCCEEEEeeccCccccCCCCCcChhHCHHHHHHHHHhcccc-----C----CCCEEEeCCCCccCch-----hHHHHHHH
Confidence 3799999999999998 9999999999999998754311 1 1125899999987532 67899999
Q ss_pred HHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCC-C-eEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCCC--C
Q 019572 136 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGG-P-VDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGY--A 211 (339)
Q Consensus 136 i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~-~-l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~--~ 211 (339)
+++.++++++++ .+||+||||||+|||.++++.+++++ + ++|||||||+|+++++. +.++|||||+++++.+. .
T Consensus 100 i~~~v~~~~~~g-~~Pi~lGGdHsit~~~~~al~~~~~~~~~vgvi~~DAH~D~~~~~~-~~~~~g~~~~~~~~~~~~~~ 177 (307)
T TIGR01227 100 IAQTAAALLADH-RVPVILGGGHSIAYATFAALAQHYKGTTAIGVINFDAHFDLRATED-GGPTSGTPFRQILDECQIED 177 (307)
T ss_pred HHHHHHHHHhcC-CeEEEECCcchhHHHHHHHHHHhcCCCCeEEEEEEccCcCCCCCCC-CCCCCchHHHHHhhccCCCC
Confidence 999999999887 89999999999999999999998753 4 99999999999999763 46889999999999764 4
Q ss_pred CcEEEEccCCC--CHHHHHHHHHcCceEEEcccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCCCCC
Q 019572 212 RRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 286 (339)
Q Consensus 212 ~~~v~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgG 286 (339)
++++|||+|++ ++++++++++.|++++++.+++.. ..+.+.++. ..+.++||||||+|||||++||||++|+|||
T Consensus 178 ~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~aPgtg~p~pgG 257 (307)
T TIGR01227 178 FHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAHAPGVSAPAPGG 257 (307)
T ss_pred CcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhhCCCCCCCCCCC
Confidence 68999999997 467899999999999999988652 223333321 1345789999999999999999999999999
Q ss_pred CCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHH
Q 019572 287 LSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 334 (339)
Q Consensus 287 ls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l 334 (339)
|+++|++++++.+. .+++|+||||+||.+|. +++|+++||++++++|
T Consensus 258 Lt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D~-~~~Ta~laa~li~~~l 306 (307)
T TIGR01227 258 LYPDELLELVKRIAASDKVRGAEIAEVNPTLDF-DQRTARAAARLVLHFL 306 (307)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHh
Confidence 99999999999983 48999999999999997 7899999999999986
No 8
>PRK13774 formimidoylglutamase; Provisional
Probab=100.00 E-value=1.7e-59 Score=447.62 Aligned_cols=254 Identities=22% Similarity=0.291 Sum_probs=219.2
Q ss_pred ccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVI 136 (339)
Q Consensus 60 ~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i 136 (339)
.+++|+|+|||.|+ ++|+|+++||++||+++..+.. +.+...++|+|||.+... +.+++++++
T Consensus 44 ~~v~iiGvP~d~g~~~n~~r~G~~~gP~aIR~as~~l~~---------~~~~~~i~D~Gdv~~~~~-----~~~~~~~~i 109 (311)
T PRK13774 44 SGVGILGYAVDKGVALNKGRIGAKEGPDAIKQAFAGLPD---------LNQCETLVDYGNVYHDHE-----ELIDTQKEF 109 (311)
T ss_pred CCEEEEEecccccccCCCCCcCHhHhHHHHHHHhhcCCc---------ccccCeEEECCCCCCCcc-----HHHHHHHHH
Confidence 68999999999998 7899999999999999764321 111114899999986532 578999999
Q ss_pred HHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcC-CCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCCCCCcEE
Q 019572 137 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLL 215 (339)
Q Consensus 137 ~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~-~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g~~~~~v 215 (339)
++.+..+++++ .+||+||||||+|||.++|+.++++ ++++|||||||+|+++++. .+||++|+++++.+...+++
T Consensus 110 ~~~v~~i~~~g-~~pivlGGdHsit~g~~~a~~~~~~~~~igvI~~DAH~Dlr~~~~---~~~g~~~~~i~e~~~~~~~~ 185 (311)
T PRK13774 110 AMLAAKSIANH-RQTFLLGGGHDIAYAQYLATRKVYPTQSIGVINIDAHFDTRAEQQ---STSGTSFRQILEEDENTDYL 185 (311)
T ss_pred HHHHHHHHHCC-CeEEEEcCchHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC---CCCChHHHHHHhcCCCCCEE
Confidence 99999999877 8999999999999999999998874 4699999999999999754 47999999999876567999
Q ss_pred EEccCCC--CHHHHHHHHHcCceEEEcccccch-----HHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCC
Q 019572 216 QVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD-----RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLS 288 (339)
Q Consensus 216 ~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~-----~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls 288 (339)
|+|+|+. .+++++++++.|++++++.++.+. .+.++.+. .+.++||||||+|||||++|||||+|+||||+
T Consensus 186 ~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~~vyvS~DiD~lDps~aPGtgtP~pgGLt 263 (311)
T PRK13774 186 VLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFI--HEHDVIMFTICMDVIDSAFAPGVSAPAVLGLY 263 (311)
T ss_pred EEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHH--hcCCeEEEEEeeCCcChhhCCCCCCCCCCCCC
Confidence 9999986 477899999999999999998653 23343332 24578999999999999999999999999999
Q ss_pred HHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHH
Q 019572 289 FRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 334 (339)
Q Consensus 289 ~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l 334 (339)
++|++++++.+. .+++|+||||+||.+|. +++|+.+||++++++|
T Consensus 264 ~~e~l~il~~l~~~~~v~g~DivE~nP~~D~-~~~Ta~laa~li~~~l 310 (311)
T PRK13774 264 PHTVLELAKRIIPSDKVSSVSIAEMNPTYDA-DNRTAKLVANLVHHFL 310 (311)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEECCCCCC-CChHHHHHHHHHHHHh
Confidence 999999999983 48999999999999997 7899999999999987
No 9
>PRK13772 formimidoylglutamase; Provisional
Probab=100.00 E-value=2.4e-59 Score=447.16 Aligned_cols=256 Identities=29% Similarity=0.404 Sum_probs=218.6
Q ss_pred cccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHH
Q 019572 59 VASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNV 135 (339)
Q Consensus 59 ~~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~ 135 (339)
+++++|+|+|||.|+ ++|+|+|+||++||++++.+..+ + ...++|+|||++... +.++++++
T Consensus 40 ~~~~~ilGvP~D~g~~~n~~r~Gar~gP~aIR~as~~l~~~-----~-----~~~i~D~Gdv~~~~~-----~~~~~~~~ 104 (314)
T PRK13772 40 AGAPVLLGFACDAGVRRNQGRAGAAHGPREIRRALAGVPAH-----G-----LPALADAGDVVCDDG-----DLESAQAA 104 (314)
T ss_pred CCCEEEEEeecCcccCcCCCCchHhHhHHHHHHHHhcCCcC-----C-----CCeEEECCCCCcCCc-----CHHHHHHH
Confidence 379999999999999 89999999999999998754321 1 135899999987532 67899999
Q ss_pred HHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHc-----CCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhC--
Q 019572 136 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL-----GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG-- 208 (339)
Q Consensus 136 i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~-----~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~-- 208 (339)
+++.++.+++++ .+||+||||||+|||.++++.+.+ +++++|||||||+|++++. .++|||+|++++++
T Consensus 105 i~~~v~~~~~~g-~~PivlGGdHsit~g~~~a~~~~~~~~~~~~~~gvI~~DAH~D~r~~~---~~~~Gs~~rri~e~~~ 180 (314)
T PRK13772 105 LAEVVAEVLAAG-ARPLVLGGGHEVAWGTWQGLRAHLDAQGDRGRVLIINLDAHFDLRTSR---PASSGTPFDQIAEDCA 180 (314)
T ss_pred HHHHHHHHHHCC-CEEEEEcCchHHHHhhHHHHHHHhhhcccCCceEEEEecccccCCCCC---CCCCCCHHHHHHHHHH
Confidence 999999999887 899999999999999999997642 1489999999999999863 46899999999984
Q ss_pred --CCCCcEEEEccCCC--CHHHHHHHHHcCceEEEcccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCC
Q 019572 209 --GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSH 281 (339)
Q Consensus 209 --g~~~~~v~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgt 281 (339)
+.+.+++|+|+|++ .+++++++++.|++++++.++.+. ..+++.+.. ....++||||||||+|||++||||||
T Consensus 181 ~~g~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~DiD~lDps~aPGvgt 260 (314)
T PRK13772 181 ARGQPFDYACLGVSRLSNTPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDLDVLPAAVAPGVSA 260 (314)
T ss_pred hcCCcceEEEEecCCCCCChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcCcccCCCCCC
Confidence 44568999999996 677888999999999999888542 334444431 12357899999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHH
Q 019572 282 IEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 334 (339)
Q Consensus 282 p~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l 334 (339)
|+|||||++|++++++.+. ++++|+||||+||.+|. +++|+.+||++++++|
T Consensus 261 P~pgGlt~~e~~~il~~l~~~~~v~g~DvvEv~P~~D~-~~~Ta~laa~li~~~l 314 (314)
T PRK13772 261 PAAYGVPLPVVEEIVLHVRASGKLRVADLAEYNPQYDR-DRRTARVAARLAYRLL 314 (314)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCeeEEEEEEECCCCCC-CCCHHHHHHHHHHHhC
Confidence 9999999999999999983 48999999999999997 7899999999999985
No 10
>PRK01722 formimidoylglutamase; Provisional
Probab=100.00 E-value=2.4e-59 Score=448.76 Aligned_cols=263 Identities=27% Similarity=0.445 Sum_probs=224.7
Q ss_pred ccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVI 136 (339)
Q Consensus 60 ~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i 136 (339)
++++|+|+|||.|+ ++|+|+++||++||+++..+..+ .. + ..++|+||+++... +.+++++++
T Consensus 41 ~~i~iiG~P~d~g~~~n~~r~Ga~~gP~aiR~a~~~~~~~-----~~---~-~~i~D~Gdv~~~~~-----~~~~~~~~i 106 (320)
T PRK01722 41 EGIALLGFACDEGVPRNKGRSGASFAPDAIRRALANMASH-----AG---H-ERLYDLGDITCHVT-----DLEEAQQAL 106 (320)
T ss_pred CCEEEEccccccCcCCCCCCccHHHhHHHHHHHHHhcccc-----CC---C-CeEEECCCcCcCch-----hHHHHHHHH
Confidence 78999999999998 58999999999999998754322 10 1 13899999987532 578999999
Q ss_pred HHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHc-CCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhC--C--CC
Q 019572 137 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL-GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG--G--YA 211 (339)
Q Consensus 137 ~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~-~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~--g--~~ 211 (339)
++.+.++++++ .+||+||||||+|||.++++.+.+ .++++|||||||+|+++++.+ .++|||||+++++. + .+
T Consensus 107 ~~~v~~~~~~g-~~pi~lGGdHsit~~~~~al~~~~~~~~i~vI~~DAH~Dl~~~~~~-~~~hg~~~~~l~~~~~~~~~~ 184 (320)
T PRK01722 107 ADTVGHCLRPN-MRTIVLGGGHEIAFGSFAGVADAFPKGKVGIINFDAHHDLRNLEDG-GPSSGTPFRQLLEYCDAQIRG 184 (320)
T ss_pred HHHHHHHHhCC-CeeEEEcCchHHHHHHHHHHHhhccCCcEEEEEEecCccCCCCCCC-CCCCChHHHHHhhhhhccCCC
Confidence 99999999877 899999999999999999998832 358999999999999998766 78999999999983 2 25
Q ss_pred CcEEEEccCCC--CHHHHHHHHHcCceEEEcccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCCCCC
Q 019572 212 RRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIEPGG 286 (339)
Q Consensus 212 ~~~v~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgG 286 (339)
++++|||+|++ ++++++++++.|++++++.++.+. +.+++.+.. ....++||||||+|||||++||||++|+|||
T Consensus 185 ~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~aPgtgtp~pgG 264 (320)
T PRK01722 185 FHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAEAPGVSAPAAGG 264 (320)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhhCCCCCCCcCCC
Confidence 79999999996 567889999999999999988642 334444321 1235789999999999999999999999999
Q ss_pred CCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHHhhhC
Q 019572 287 LSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 339 (339)
Q Consensus 287 ls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~~~~~ 339 (339)
|+++|++++++.+. .+++|+||||+||.+|. +++|+.+||++++++|.++++
T Consensus 265 ls~~e~~~il~~l~~~~~vvg~DivE~~P~~D~-~~~Ta~laa~li~~~l~~~~~ 318 (320)
T PRK01722 265 VPLETLLRAIEPICRSGKLQAADLVEYNPTFDF-DDMTARVAARLIWQIAHAWRT 318 (320)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHHHhhc
Confidence 99999999999983 48999999999999997 789999999999999998764
No 11
>PRK13776 formimidoylglutamase; Provisional
Probab=100.00 E-value=7e-59 Score=444.50 Aligned_cols=256 Identities=26% Similarity=0.371 Sum_probs=221.1
Q ss_pred ccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVI 136 (339)
Q Consensus 60 ~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i 136 (339)
++++|+|+|||.|+ ++|+|+|+||++||+++.....+ . ...++|+||+++... +.+++++++
T Consensus 42 ~~v~iiGvP~d~g~~~n~~r~G~r~gP~aiR~a~~~~~~~----~------~~~i~D~Gdv~~~~~-----~~~~~~~~i 106 (318)
T PRK13776 42 PKVALLGFACDAGVRRNQGRVGAKHGPDAIRRALANLPWH----G------GRAVVDAGDVVCEDD-----DLEAAQSRY 106 (318)
T ss_pred CCEEEEeeccccccCCCCCCcChhHCHHHHHHHhhccccc----C------CCeEEECCCCCCCcc-----hHHHHHHHH
Confidence 79999999999998 89999999999999998654221 1 124899999987542 578999999
Q ss_pred HHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcC-----CCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhC---
Q 019572 137 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-----GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG--- 208 (339)
Q Consensus 137 ~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~-----~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~--- 208 (339)
++.+..+++++ .+||+||||||+|||.++|+.++++ ++++|||||||+|+++. +.++||++|++++++
T Consensus 107 ~~~v~~i~~~g-~~Pi~lGGdHsit~g~~~a~~~~~~~~~~~~~vgvI~~DAH~D~~~~---~~~~~g~~~r~~~e~~~~ 182 (318)
T PRK13776 107 AQRVHDLLDRG-HLPIGLGGGHEIAWASFQGLARHLARSAPLPRIGIINFDAHFDLRKG---ERGSSGTPFRQIAEYCAA 182 (318)
T ss_pred HHHHHHHHhCC-CeEEEEcCchHHHHHhHHHHHHHhhcccCCCceEEEEeCCcccCCCC---CCCCCCCHHHHHHHHHhh
Confidence 99999999887 8999999999999999999998861 48999999999999953 457899999999974
Q ss_pred -CCCCcEEEEccCCC--CHHHHHHHHHcCceEEEcccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCC
Q 019572 209 -GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHI 282 (339)
Q Consensus 209 -g~~~~~v~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgtp 282 (339)
+.+.+++|||+|++ .+++++++++.|++++++.++.+. ..+++.+.. ..+.++||||||||||||++|||||+|
T Consensus 183 ~g~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~vyvS~DiD~lDps~aPGtgtP 262 (318)
T PRK13776 183 KGWPFHYCCLGVSRFSNTAALFERAKQLGVRYLSDEDMYEWSLARILAFLDDFIANVDHIYLTICLDVLPAAVAPGVSAP 262 (318)
T ss_pred cCCcceEEEEccCCCCCCHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEeCCcCcccCCCCCCC
Confidence 44578999999987 477889999999999999998653 345554431 124678999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHH
Q 019572 283 EPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTA 335 (339)
Q Consensus 283 ~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~ 335 (339)
+|||||++|++++++.+. .+++|+||||+||.+|. +++|+.+||+++++++.
T Consensus 263 ~pgGLt~~e~~~il~~l~~~~~vvg~DvvEv~P~~D~-~~~Ta~laa~li~~~l~ 316 (318)
T PRK13776 263 AARGVSLWVIEPLVKRIIASGKLRLADIAELNPPLDI-DQRTARVAARLVAELVD 316 (318)
T ss_pred CCCCCCHHHHHHHHHHHHccCCEEEEEEEEECCCCCC-CCcHHHHHHHHHHHHHh
Confidence 999999999999999983 48999999999999997 78999999999999984
No 12
>PRK13773 formimidoylglutamase; Provisional
Probab=100.00 E-value=1.5e-58 Score=443.42 Aligned_cols=258 Identities=26% Similarity=0.326 Sum_probs=220.2
Q ss_pred ccEEEEEeeCCCCC---CCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNS---SFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVI 136 (339)
Q Consensus 60 ~~i~ilGvP~d~g~---s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i 136 (339)
++++|+|+|||.|+ ++|+|+++||++||++++....+ .+ ..++|+|||.+... +.++++++|
T Consensus 44 ~~i~iiGvP~d~g~~~n~~r~G~~~gP~aIR~a~~~~~~~----~~------~~i~D~Gdv~~~~~-----~~~~~~~~i 108 (324)
T PRK13773 44 RGCVLLGFASDEGVRRNKGRVGAAAGPDALRGALGSLALH----EP------RRVYDAGTVTVPGG-----DLEAGQERL 108 (324)
T ss_pred CCEEEEEeccccCCCCCCCCCChhHCHHHHHHHHhhchhc----cC------CeEEeCCCcCCCCc-----CHHHHHHHH
Confidence 68999999999998 79999999999999998653311 11 24899999987532 678999999
Q ss_pred HHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHc----CCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhC----
Q 019572 137 TESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL----GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEG---- 208 (339)
Q Consensus 137 ~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~----~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~---- 208 (339)
++.++++++++ .+||+||||||+|||.++++.+++ +++++|||||||+|++++ +.++|||||+++++.
T Consensus 109 ~~~v~~~~~~g-~~PivLGGdHsit~g~~~a~~~~~~~~~~~~vgvI~~DAH~D~~~~---~~~~~G~p~~~~~~~~~~~ 184 (324)
T PRK13773 109 GDAVSALLDAG-HLPVVLGGGHETAFGSYLGVAGSERRRPGKRLGILNLDAHFDLRAA---PVPSSGTPFRQIARAEEAA 184 (324)
T ss_pred HHHHHHHHHCC-CeeEEECCchHHHHHhHHHHHHhhhcccCCceEEEEeCCCccCCCC---CCCCCChHHHHHhhccccc
Confidence 99999999887 899999999999999999999886 258999999999999986 347899999999984
Q ss_pred CCCCcEEEEccCCC--CHHHHHHHHHcCceEEEcccccch--HHHHHHhhc-cCCcceEEEEEeccccCCCCCCCCCCCC
Q 019572 209 GYARRLLQVGIRSI--TKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL-GEGVKGVYISVDVDCLDPAFAPGVSHIE 283 (339)
Q Consensus 209 g~~~~~v~iGiR~~--~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~-~~~~~~vYlS~DiDvLDpa~aPgtgtp~ 283 (339)
+...+++|+|+|+. ..++++++++.|++++++++++.. ..+.+.+.. ..+.++||||||+|||||++|||||+|+
T Consensus 185 ~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~vylS~DiD~lDps~aPGtgtP~ 264 (324)
T PRK13773 185 GRTFQYSVLGISEPNNTRALFDTARELGVRYLLDEECQVMDRAAVRVFVADFLADVDVIYLTIDLDVLPAAVAPGVSAPA 264 (324)
T ss_pred CCCccEEEeecCcccccHHHHHHHHHcCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEeeCcCCcccCCCCCCCC
Confidence 23468999999985 677889999999999999998542 223332221 1245789999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHHHhh
Q 019572 284 PGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 337 (339)
Q Consensus 284 pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l~~~ 337 (339)
||||+++|++++++.+. .+++|+||||+||.+|. +++|+.+||+++++++.++
T Consensus 265 pgGlt~~E~~~ll~~l~~~~~vvg~DvvE~~P~~D~-~~~Ta~laa~li~~~l~~~ 319 (324)
T PRK13773 265 AYGVPLEVIQAVCDRVAASGKLALVDVAELNPRFDI-DNRTARVAARLIHTIVTAH 319 (324)
T ss_pred CCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCccCC-CCCHHHHHHHHHHHHHHhh
Confidence 99999999999999984 48999999999999997 7899999999999999875
No 13
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=100.00 E-value=1.3e-58 Score=435.35 Aligned_cols=266 Identities=39% Similarity=0.648 Sum_probs=214.8
Q ss_pred ccEEEEEeeCCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCcccccccCCCCCHHHHHHHHHHH
Q 019572 60 ASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVITES 139 (339)
Q Consensus 60 ~~i~ilGvP~d~g~s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~~~~~~~~~~~~~i~~~ 139 (339)
++++|+|+|||.+.++++|+++||++||+++..+.. . .+...+..+...++|+||+.... +.+++++++++.
T Consensus 1 a~i~iiGvP~d~~~~~~~G~~~gP~air~a~~~~~~-~-~~~~~~~~~~~~i~D~Gdv~~~~------~~~~~~~~l~~~ 72 (277)
T PF00491_consen 1 ADIVIIGVPYDGTGSGRPGARFGPDAIREASYRLSP-Q-LEYDLDLGEQLSIVDLGDVPVPP------DNEQVFERLAEA 72 (277)
T ss_dssp ESEEEEEEE--TTTSSSTTGGGHHHHHHHHHCTSHS-C-HHEETCTTGTSEEEEEEEEE-SS------SHHHHHHHHHHH
T ss_pred CeEEEEEeecCCCCCCCCCHHHHHHHHHHHHhhccc-c-cCCCccccccceEEEcCCCcCCc------cHHHHHHHHHHH
Confidence 589999999999888999999999999999875442 0 00111111335689999997652 346689999999
Q ss_pred HHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCC-CCCCCCChhHHHHHHhCCC--CCcEEE
Q 019572 140 VKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAF-EGNKYSHASSFARIMEGGY--ARRLLQ 216 (339)
Q Consensus 140 v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~-~g~~~~hgs~~~~~~~~g~--~~~~v~ 216 (339)
++++++++ .+||++||||++|||.+++++++++++++|||||||+|++++. +++.++|||||+++++++. +++++|
T Consensus 73 v~~~~~~g-~~pi~lGGdhsis~~~~~~l~~~~~~~i~vI~~DAH~D~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~ 151 (277)
T PF00491_consen 73 VAEVLEAG-AFPIVLGGDHSISYGTIAALARAYGGPIGVIWFDAHPDLRTPETSGSGNSHGMPLRRALEEPLLDPENVVQ 151 (277)
T ss_dssp HHHHHHTT-EEEEEEESSGGGHHHHHHHHHHHHTTTEEEEEESSS----STTTTTSSSGTTSHHHHHHHTTSSEGGGEEE
T ss_pred HHHhhcCC-CEEEecCCCchhHHHhHHHHHhhcCCCeeEEEecCccCCCcccccCCCCCCCChhhhhcccCCcCcCcEEE
Confidence 99999887 8999999999999999999999987899999999999999987 6788999999999997765 489999
Q ss_pred EccCCCCHH-HHHHHHHcCceEEEcccccch--HHHHHHhhc--cCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHH
Q 019572 217 VGIRSITKE-GREQGKRFGVEQYEMRTFSRD--RQFLENLKL--GEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRD 291 (339)
Q Consensus 217 iGiR~~~~~-e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~--~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e 291 (339)
||+|+...+ +++++++.|+++++++++... .++++.+.. ..+.++||||||+|||||+++|||++|+||||+++|
T Consensus 152 iG~r~~~~~~e~~~~~~~~i~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e 231 (277)
T PF00491_consen 152 IGIRSFDNESEYEYLKELGIKIFSADEIREDGIDAVLEEILEALGSGTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRE 231 (277)
T ss_dssp EEE-STTHHHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTTSTSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHH
T ss_pred EecccccchHHHHHHHHcCCEEEehhHhhhhhhhhHHHHHHHHHhcCCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHH
Confidence 999999988 899999999999999999754 233444321 235789999999999999999999999999999999
Q ss_pred HHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHHH
Q 019572 292 VLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELT 334 (339)
Q Consensus 292 ~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~l 334 (339)
++++++.+. .+|+|+||||++|.+|..+++|++++|++++++|
T Consensus 232 ~~~~l~~l~~~~~vvg~di~E~~P~~D~~~~~ta~~aa~li~~~~ 276 (277)
T PF00491_consen 232 LLQLLRALARSGKVVGLDIVEYNPDLDPDGEQTARLAARLIWEFI 276 (277)
T ss_dssp HHHHHHHHHHHSEEEEEEEE-B-GGGSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCeEEEEEEEECCCcCcchHHHHHHHHHHHHHHh
Confidence 999999994 6999999999999999733499999999999974
No 14
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=100.00 E-value=3.6e-56 Score=423.13 Aligned_cols=261 Identities=29% Similarity=0.383 Sum_probs=215.5
Q ss_pred EEEEeeCCCCCCCCCCccchHHHHHHH-HhcCCCCCCcccCCCCCCCccccccCCcccccc-cC-------CCCCHHHHH
Q 019572 63 SLLGVPLGHNSSFLQGPAFAPPRIREA-IWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEI-RD-------CGVDDDRLM 133 (339)
Q Consensus 63 ~ilGvP~d~g~s~r~Ga~~gP~aIR~a-~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~-~~-------~~~~~~~~~ 133 (339)
.|+|+|+|.|+ +|+|+++||++||++ +.... ...+ ..+.|+||+.+... .. ...+.++++
T Consensus 1 ~liG~P~d~G~-~~~Ga~~gP~aiR~a~l~~~~----~~~~------~~i~D~Gdv~~~~~~~~~~~~~~~~~~~~~~~~ 69 (300)
T TIGR01229 1 GIVGLPFSLGQ-PRRGVDKGPSRLREAGLLETL----RELE------YDMQDLGQLPFAVRPKESPRYAVKNPRYVLAAT 69 (300)
T ss_pred CEEEEecCCCC-CCccHHHhHHHHHHcChHHHH----HhcC------CeeEECCccccCccccccccccccCHHHHHHHH
Confidence 48999999997 589999999999999 33210 0111 24799999974311 00 011467889
Q ss_pred HHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcC-CCeEEEEEecCCCCCCCCC-CCCCCChhHHHHHHhCC--
Q 019572 134 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG-GPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEGG-- 209 (339)
Q Consensus 134 ~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~-~~l~vI~~DAH~D~~~~~~-g~~~~hgs~~~~~~~~g-- 209 (339)
+++++.++.+++++ .+||+||||||+|||.+++++++++ ++++|||||||+|+++++. ++.+.|||||+++++..
T Consensus 70 ~~i~~~v~~~~~~g-~~pi~lGGdHsi~~~~~~a~~~~~~~~~~gvI~~DAH~D~~~~~~~~s~~~hG~p~~~~~~~~~~ 148 (300)
T TIGR01229 70 EQLAPKVYEVFEEG-RFPLVLGGDHSIAIGTISGTARVHPDKKLGVLWLDAHADINTPETTTSGNLHGMPVAFLLGRLKS 148 (300)
T ss_pred HHHHHHHHHHHhCC-CeeEEEcCcchhhhhhHHHHHHhcCCCceEEEEEecCcccCCCCCCCCCCcccCHHHHHhcccCc
Confidence 99999999999887 7999999999999999999999875 2599999999999999864 56788999999998621
Q ss_pred ---------------CCCcEEEEccCCCCHHHHHHHHHcCceEEEcccccch--HHHHHHhhc--cCCcceEEEEEeccc
Q 019572 210 ---------------YARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENLKL--GEGVKGVYISVDVDC 270 (339)
Q Consensus 210 ---------------~~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l~~--~~~~~~vYlS~DiDv 270 (339)
.+++++|||+|+++++|++++++.|++++++.++.+. +++++.+.. ..++.+||||||+||
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDv 228 (300)
T TIGR01229 149 EFPDSPGLGWVAPEISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDG 228 (300)
T ss_pred cccccccccccCCccCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 1469999999999999999999999999999998653 334443321 123348999999999
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCC--CCCChHHHHHHHHHHHHHHh
Q 019572 271 LDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRD--TVDGMTAMVAAKLVRELTAK 336 (339)
Q Consensus 271 LDpa~aPgtgtp~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D--~~~~~Ta~laA~li~~~l~~ 336 (339)
|||++||||++|+||||+++|++.+++.+. .+++|+||||+||.+| . +++|+.+||+++++++..
T Consensus 229 lDps~aPgv~tp~pgGl~~~e~~~~l~~i~~~~~v~g~DivE~~P~~D~~~-~~~Ta~laa~li~~~lg~ 297 (300)
T TIGR01229 229 LDPSLAPATGTPVVGGLTFREGLLIMEMLYETGLLTALDVVEVNPTLDIKH-VNRTIKTAVEIVRSLLGS 297 (300)
T ss_pred cCcccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECccccccc-ccHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999984 5899999999999999 7 789999999999999853
No 15
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-44 Score=321.79 Aligned_cols=260 Identities=25% Similarity=0.356 Sum_probs=204.4
Q ss_pred cEEEEEeeCCCCCCCCCCccchHHHHHHHHhcCCCCCCcccCCCCCCCccccccCCccccccc--C--------CCCCHH
Q 019572 61 STSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR--D--------CGVDDD 130 (339)
Q Consensus 61 ~i~ilGvP~d~g~s~r~Ga~~gP~aIR~a~~~~~~~~~~~~g~~~~~~~~i~D~GDv~~~~~~--~--------~~~~~~ 130 (339)
-|.+||.||..|.. +-|++.||+.||++.+.... .+.|.+ +-|.||+.+.... + .....-
T Consensus 16 ~v~iIg~pfs~gq~-k~G~E~~pe~i~~agl~~~l---e~lg~~------~~~~g~~~f~~~p~kd~~~~~~~knp~~V~ 85 (318)
T KOG2965|consen 16 VVSIIGAPFSGGQP-KLGVELAPEVIRKAGLLEDL---EDLGCS------VKDWGDLIFKSRPGKDSPNQALAKNPRSVG 85 (318)
T ss_pred heeEeeccccCCCC-ccchhhhHHHHHHhchhhhH---HHcCCC------HHHhcCcccccCCCCCCcchhhhcCchhHh
Confidence 48999999999876 89999999999999553211 012221 3356665442211 0 011234
Q ss_pred HHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCCC-CCCCCChhHHHHHHhCC
Q 019572 131 RLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFE-GNKYSHASSFARIMEGG 209 (339)
Q Consensus 131 ~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~~-g~~~~hgs~~~~~~~~g 209 (339)
.+.++++..++++++++ .+++++|||||++.+.+.++++.|+ +++|||+|||.|+++|.+ .+..-||+|++.+++..
T Consensus 86 ~atrqla~~v~~vve~~-r~~l~lGGDHSlAIGTvsgva~~~~-D~gvlWvDAHaDinTp~ts~SgNLHG~PvSflLg~~ 163 (318)
T KOG2965|consen 86 NATRQLANEVSQVVENG-RILLVLGGDHSLAIGTVSGVARVYP-DAGVLWVDAHADINTPDTSPSGNLHGCPVSFLLGEL 163 (318)
T ss_pred HHHHHHHHHHHHHHhcC-eEEEEecCcceEEEeeehhhHhhCC-CccEEEEecccccCCCCCCCCCCcCCCcHHHHHhcc
Confidence 67888999999999877 7899999999999999999999995 999999999999999852 23345999999998763
Q ss_pred C--------------CCcEEEEccCCCCHHHHHHHHHcCceEEEcccccch--HHHHHHh---hccCCcceEEEEEeccc
Q 019572 210 Y--------------ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRD--RQFLENL---KLGEGVKGVYISVDVDC 270 (339)
Q Consensus 210 ~--------------~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~--~~~l~~l---~~~~~~~~vYlS~DiDv 270 (339)
. +++++.||+|+.++.|...++++|+.+|+|.++.+. ..++|.. .......|+++|||+|.
T Consensus 164 ~p~~~~f~w~~p~i~~~~l~yIGLRDvdp~E~~iLk~lgI~~fsm~~Vdk~GI~~Vme~a~~~v~~~~~rpihlSfDvDg 243 (318)
T KOG2965|consen 164 KPLPEGFSWVKPCISPKRLAYIGLRDVDPGEHAILKELGIAAFSMHEVDKYGIQKVMEMAMELVNPGTRRPIHLSFDVDG 243 (318)
T ss_pred CCCCccccccccccChhheEEEecccCChHHHHHHHhcCcceEeehhhHhhhHHHHHHHHHHHhcCCCccceeEEEecCC
Confidence 1 478999999999999999999999999999999875 3344322 11223479999999999
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHhh--CCeeEEEEeeeCCCCCCCCChHHHHHHHHHHHH
Q 019572 271 LDPAFAPGVSHIEPGGLSFRDVLNILHNLQ--ADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 333 (339)
Q Consensus 271 LDpa~aPgtgtp~pgGls~~e~~~il~~l~--~~vvG~DivEv~P~~D~~~~~Ta~laA~li~~~ 333 (339)
+||+++|+||||++||||++|.+.+++.+. ++++++||||+||.++. .+.++...+.++.++
T Consensus 244 ~Dp~~aPAtGTpv~gGLt~rE~myi~e~i~~Tg~LiAldvvEvnP~l~~-t~eea~~tv~~av~i 307 (318)
T KOG2965|consen 244 FDPSYAPATGTPVVGGLTYREGMYICEEIAETGLLIALDVVEVNPLLGN-TEEEAKTTVSLAVAI 307 (318)
T ss_pred cCccccCCCCCcCCCcccHHHHHHHHHHHHhcCCeeEEEEEEeccccCC-cHHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 69999999999999996 444554444444443
No 16
>PF12640 UPF0489: UPF0489 domain; InterPro: IPR024131 This entry describes a family of uncharacterised proteins found in metazoa.
Probab=95.92 E-value=0.047 Score=47.17 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=36.8
Q ss_pred CCcchhHh-HHHHHHHc-CCCeEEEEEecCCCCCCCCC--------C--------------CCCCChhHHHHHHhCCCCC
Q 019572 157 DHSISFPV-IRAVSEKL-GGPVDVLHLDAHPDIYDAFE--------G--------------NKYSHASSFARIMEGGYAR 212 (339)
Q Consensus 157 DHsit~~~-l~al~~~~-~~~l~vI~~DAH~D~~~~~~--------g--------------~~~~hgs~~~~~~~~g~~~ 212 (339)
||.-+++. .+++.++. +.+..|||||+|+|+..+.. . ...+.+++..-++..|..+
T Consensus 6 ~H~~al~~w~~~~~~~~l~~~~~lvHiD~H~Dl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~idn~I~pa~~~g~i~ 85 (162)
T PF12640_consen 6 DHNEALPFWYRAIGRGKLPSPNSLVHIDSHPDLRIPFDMSADPIFEKLLDLPDELTFEYTNELLNIDNFILPAVYAGHIS 85 (162)
T ss_pred ChHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCcccccchhhhhhhccccccccchhhhhhcCCHHHHHHHHHhhcccC
Confidence 44444444 44444432 26899999999999977631 1 1234566666666666655
Q ss_pred cEEEEc
Q 019572 213 RLLQVG 218 (339)
Q Consensus 213 ~~v~iG 218 (339)
+++.|-
T Consensus 86 ~v~~i~ 91 (162)
T PF12640_consen 86 DVIWIH 91 (162)
T ss_pred eEEEEe
Confidence 655543
No 17
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=57.52 E-value=19 Score=34.95 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHH
Q 019572 128 DDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRA 167 (339)
Q Consensus 128 ~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~a 167 (339)
+..+.......+++.|.+++ ..||+.||.|+---+.+..
T Consensus 77 t~~~F~~~a~~aie~I~~rg-k~PIv~GGs~~yi~al~~~ 115 (348)
T KOG1384|consen 77 TAGEFEDDASRAIEEIHSRG-KLPIVVGGSNSYLQALLSK 115 (348)
T ss_pred cHHHHHHHHHHHHHHHHhCC-CCCEEeCCchhhHHHHhhc
Confidence 44555566677888888887 7899999999875555543
No 18
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=50.65 E-value=35 Score=31.85 Aligned_cols=52 Identities=12% Similarity=0.006 Sum_probs=32.9
Q ss_pred ccccCCcccccccCCCCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchh
Q 019572 111 LTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISF 162 (339)
Q Consensus 111 i~D~GDv~~~~~~~~~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~ 162 (339)
+.+||-....+..+...++..++..+...+.+.+.+.+.+++.+|||+.++.
T Consensus 9 id~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iav 60 (254)
T PRK02240 9 IDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAV 60 (254)
T ss_pred ecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEE
Confidence 5567766655543322234445555555555555555579999999999987
No 19
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=46.53 E-value=2.9e+02 Score=26.88 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCCcEEEEccCCCCHHHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccccCCCCCC-CC
Q 019572 201 SFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAP-GV 279 (339)
Q Consensus 201 ~~~~~~~~g~~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aP-gt 279 (339)
-+..+.+.+...+++..|. ..++++.+++.+.|+..+..+...+.+.+.+..+.....-+|+|-+|.+.-...... ++
T Consensus 59 E~~~~~~~~~~~~I~~~gp-~k~~~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~ 137 (377)
T cd06843 59 EIAHVRAAVPDAPLIFGGP-GKTDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTM 137 (377)
T ss_pred HHHHHHhcCCCCeEEEeCC-CCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceec
Confidence 3455555554566776654 245678888888898666554444322222211111122468888887643222111 11
Q ss_pred -CCCCCCCCCHHHHHHHHHHhh---C-CeeEEEEe
Q 019572 280 -SHIEPGGLSFRDVLNILHNLQ---A-DVVAADVV 309 (339)
Q Consensus 280 -gtp~pgGls~~e~~~il~~l~---~-~vvG~Div 309 (339)
+.+.-.|+++.|+.++++.+. + +++|+-.-
T Consensus 138 ~~~~srfG~~~~~~~~~~~~~~~~~~l~~~Glh~H 172 (377)
T cd06843 138 GGQPTPFGIDEADLPDALELLRDLPNIRLRGFHFH 172 (377)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHhCCCccEEEEEEE
Confidence 234567999999999888773 2 56776543
No 20
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=38.71 E-value=2.7e+02 Score=26.93 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCCCCCCCCCCCCChhHH-HHHHhCC--CCC
Q 019572 136 ITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSF-ARIMEGG--YAR 212 (339)
Q Consensus 136 i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~-~~~~~~g--~~~ 212 (339)
++-.+-+.+.++-...|+.||=||-..-...+++++.|-+ .+..++--.| +- ...|+++ .++++.. ..+
T Consensus 52 Lefll~eal~~g~dTlvT~GgiQSNh~r~tAavA~~lGl~-~v~ile~~~~-~y------~~ngn~Ll~~l~G~~~~~~~ 123 (323)
T COG2515 52 LEFLLGEALRKGADTLVTYGGIQSNHVRQTAAVAAKLGLK-CVLILENIEA-NY------LLNGNLLLSKLMGAEVRAVD 123 (323)
T ss_pred HHHHHhhhhhcCCcEEEEecccchhHHHHHHHHHHhcCCc-EEEEEecccc-cc------ccccchhhhhhcCceEEEec
Confidence 3333333445564689999999999999999999987622 2333333333 11 1234443 2222211 012
Q ss_pred cEEEEccCCCCHHHHHHHHHcCce
Q 019572 213 RLLQVGIRSITKEGREQGKRFGVE 236 (339)
Q Consensus 213 ~~v~iGiR~~~~~e~~~~~~~g~~ 236 (339)
.-..+|++....+-.+.+++.|.+
T Consensus 124 ~~~d~~~~~~~~~~~e~~~~~g~k 147 (323)
T COG2515 124 AGTDIGINASAEELAEEVRKQGGK 147 (323)
T ss_pred CCCChhhchhhHHHHHHHHhcCCC
Confidence 223345555555556667777754
No 21
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.21 E-value=3.7e+02 Score=25.76 Aligned_cols=158 Identities=13% Similarity=0.241 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCC-eeEEeCCCCcch-hHhHHHHHHHcC--CCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHhCC
Q 019572 134 NVITESVKLVMEEDPL-HPLVLGGDHSIS-FPVIRAVSEKLG--GPVDVLHLDAHPDIYDAFEGNKYSHASSFARIMEGG 209 (339)
Q Consensus 134 ~~i~~~v~~il~~~~~-~pi~lGGDHsit-~~~l~al~~~~~--~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~~g 209 (339)
+.+.+.++.+.+..+. ..++-|||..+- -.-+..+.+... +.+..|.|....=... +..++ ...++.+.+.+
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~---p~rit-~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVAD---PARVT-PALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccC---hhhcC-HHHHHHHHHcC
Confidence 3444444444333222 367778888762 233444333221 2344556653222121 12222 23444454544
Q ss_pred CCCcEEEEccCCCCHHH--------HHHHHHcCceEEEccc----ccch----HHHHHHhhccCCcceEEEEEeccccCC
Q 019572 210 YARRLLQVGIRSITKEG--------REQGKRFGVEQYEMRT----FSRD----RQFLENLKLGEGVKGVYISVDVDCLDP 273 (339)
Q Consensus 210 ~~~~~v~iGiR~~~~~e--------~~~~~~~g~~~~~~~~----~~~~----~~~l~~l~~~~~~~~vYlS~DiDvLDp 273 (339)
.+ +.|++....+.+ .+.+++.|+.+....- +.+. .++.+.+. ..+..++|++. ++|
T Consensus 198 --~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~-~~gv~pyyl~~----~~p 269 (321)
T TIGR03822 198 --KT-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFV-ECRIKPYYLHH----LDL 269 (321)
T ss_pred --Cc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHH-hcCCeeEEEEe----cCC
Confidence 23 578888764332 3456778887643222 2222 23333332 35778999987 555
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhCCeeEEEE
Q 019572 274 AFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADV 308 (339)
Q Consensus 274 a~aPgtgtp~pgGls~~e~~~il~~l~~~vvG~Di 308 (339)
.||++. ..++..+..++++.+.+.+-|+-+
T Consensus 270 --~~g~~~---f~~~~~~~~~i~~~l~~~~~g~~~ 299 (321)
T TIGR03822 270 --APGTAH---FRVTIEEGQALVRALRGRISGLAQ 299 (321)
T ss_pred --CCCccc---ccCcHHHHHHHHHHHHHhCCCCcc
Confidence 455433 358899999999988666555543
No 22
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=33.26 E-value=58 Score=30.26 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHH
Q 019572 127 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRA 167 (339)
Q Consensus 127 ~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~a 167 (339)
++..+..+...+.+..+.+++ ..||++||-+.---+++.+
T Consensus 36 ysv~~f~~~a~~~i~~i~~rg-k~PIlvGGTglYi~all~g 75 (253)
T PF01715_consen 36 YSVGDFQRDAREAIEDILARG-KIPILVGGTGLYIQALLNG 75 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CeEEEECChHHHHHHHHhC
Confidence 366777788888888888887 7999999976544444433
No 23
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=32.14 E-value=23 Score=26.75 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHhhCCeeEEEEeeeCCCCCC
Q 019572 285 GGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 317 (339)
Q Consensus 285 gGls~~e~~~il~~l~~~vvG~DivEv~P~~D~ 317 (339)
|-++.+|++++.+.. |+|+||++|.-++
T Consensus 26 Gv~~~~eAl~~A~~~-----~lDLV~v~~~~~P 53 (76)
T PF05198_consen 26 GVMSLREALRLAKEK-----GLDLVEVSPNADP 53 (76)
T ss_dssp EEEEHHHHHHHHHHT-----T-EEEEEETTSSS
T ss_pred ceEEHHHHHHHHHHc-----CCcEEEEcCCCCC
Confidence 467889999998876 8899999987554
No 24
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=31.36 E-value=5.2e+02 Score=25.50 Aligned_cols=103 Identities=8% Similarity=0.075 Sum_probs=64.9
Q ss_pred ChhHHHHHHhCCC-CCcEEEEccCCCCHHHHHHHHHcCceEEEcccccchHHHHHHhhccCCcceEEEEEeccccCCCCC
Q 019572 198 HASSFARIMEGGY-ARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFA 276 (339)
Q Consensus 198 hgs~~~~~~~~g~-~~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~l~~l~~~~~~~~vYlS~DiDvLDpa~a 276 (339)
+..-+..++..|. +++++.-|.- .+.++.+.+.+.|+..+..+.+.+.+.+.+ . ....+|.|-+-.+ ....
T Consensus 66 S~gEl~~al~~G~~~~~Iif~gp~-K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~-~---~~~~~v~lRi~~~---~~~~ 137 (394)
T cd06831 66 SKNEMALVQELGVSPENIIYTNPC-KQASQIKYAAKVGVNIMTCDNEIELKKIAR-N---HPNAKLLLHIATE---DNIG 137 (394)
T ss_pred CHHHHHHHHhcCCCcCCEEEeCCC-CCHHHHHHHHHCCCCEEEECCHHHHHHHHH-h---CCCCcEEEEEecc---CCCC
Confidence 3445777777664 6777777753 467788888899998777665543332222 1 1234688877654 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhh--C-CeeEEEEe
Q 019572 277 PGVSHIEPGGLSFRDVLNILHNLQ--A-DVVAADVV 309 (339)
Q Consensus 277 Pgtgtp~pgGls~~e~~~il~~l~--~-~vvG~Div 309 (339)
.+ ......|++.+++.++++.+. + +++|+.+-
T Consensus 138 ~~-~~~~KFGi~~~~~~~~l~~~~~~~l~~~Gih~H 172 (394)
T cd06831 138 GE-EMNMKFGTTLKNCRHLLECAKELDVQIVGVKFH 172 (394)
T ss_pred CC-ccCCCCCCCHHHHHHHHHHHHHCCCeEEEEEEE
Confidence 11 123578999999999988774 2 67777664
No 25
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=30.45 E-value=5.5e+02 Score=25.50 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=75.8
Q ss_pred CCChhHHHHHHhCCCC-CcEEEEccCCCCHHHHHHHHHcCceEEEcccccchHHHHHHhhccCC--cceEEEEEeccccC
Q 019572 196 YSHASSFARIMEGGYA-RRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQFLENLKLGEG--VKGVYISVDVDCLD 272 (339)
Q Consensus 196 ~~hgs~~~~~~~~g~~-~~~v~iGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~l~~l~~~~~--~~~vYlS~DiDvLD 272 (339)
..+..-++++++.|.+ ++++ +.--..+.+|.+++-+.|+..|..+.+.+ ++.+..... ..+|.+-+.-|+-.
T Consensus 80 v~S~gEl~~al~aG~~~~~I~-f~g~~ks~~ei~~a~e~gi~~i~vdS~~E----l~~l~~~a~~~~~~v~lRInP~~~~ 154 (394)
T COG0019 80 VASLGELELALAAGFPPERIV-FSGPAKSEEEIAFALELGIKLINVDSEEE----LERLSAIAPGLVARVSLRINPGVSA 154 (394)
T ss_pred ecCHHHHHHHHHcCCChhhEE-ECCCCCCHHHHHHHHHcCCcEEEeCCHHH----HHHHHHhccccCceEEEEECCCCCC
Confidence 3455668888888764 4554 44345678899999999998776654432 333321122 25788888887754
Q ss_pred CC---CCCCCCCCCCCCCCHHHHHHHHHHhh----CCeeEEEEeeeCCCCCC
Q 019572 273 PA---FAPGVSHIEPGGLSFRDVLNILHNLQ----ADVVAADVVEFNPQRDT 317 (339)
Q Consensus 273 pa---~aPgtgtp~pgGls~~e~~~il~~l~----~~vvG~DivEv~P~~D~ 317 (339)
-. ..+| .-..--|++..++.++++.+. -+++|+++---+=..|.
T Consensus 155 ~th~~~~tg-~~~sKFG~~~~~a~~~~~~~~~~~~l~~~Glh~HiGSq~~d~ 205 (394)
T COG0019 155 GTHEYIATG-GKSSKFGISPEEALDVLERAAKLLGLELVGLHFHIGSQITDL 205 (394)
T ss_pred ccCccccCC-ccccccCCCHHHHHHHHHHHHhcCCCceEEEEEeecCCCCCc
Confidence 22 2332 122557999999877777662 38999999887777674
No 26
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=28.76 E-value=60 Score=31.13 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.9
Q ss_pred eEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCC
Q 019572 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 187 (339)
Q Consensus 151 pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~ 187 (339)
-|+++|.+++|-++++.+.++ .+.|+++|.+.-.
T Consensus 37 ~I~i~g~~~lst~~l~~l~~~---~I~v~f~~~~g~~ 70 (323)
T TIGR00287 37 CIVLFGGVSISSAAIRELAKR---GIDIVFLGGDGNY 70 (323)
T ss_pred EEEEECCCCcCHHHHHHHHHC---CCeEEEECCCCcE
Confidence 456668899999999999874 7999999977643
No 27
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=28.05 E-value=1e+02 Score=27.88 Aligned_cols=44 Identities=27% Similarity=0.539 Sum_probs=36.8
Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHhh-CCeeEEEEeeeCCCCCCCCC
Q 019572 274 AFAPGVSHI-EPGGLSFRDVLNILHNLQ-ADVVAADVVEFNPQRDTVDG 320 (339)
Q Consensus 274 a~aPgtgtp-~pgGls~~e~~~il~~l~-~~vvG~DivEv~P~~D~~~~ 320 (339)
+..|+-+.| .+|-|.+.-+.+.|+.+. .-++| |||-|..|++.+
T Consensus 207 AQVP~Rgepd~~GEldy~fiF~~l~~~gy~g~iG---cEYkPk~dtveg 252 (264)
T KOG4518|consen 207 AQVPNRGEPDTRGELDYHFIFDELRSIGYSGVIG---CEYKPKLDTVEG 252 (264)
T ss_pred eecCCCCCCCCCCccccHHHHHHHHHhCCCceee---eeeccCcCcccc
Confidence 678999988 578899999999999996 46788 589999997554
No 28
>PLN02748 tRNA dimethylallyltransferase
Probab=26.50 E-value=74 Score=32.48 Aligned_cols=41 Identities=7% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHH
Q 019572 127 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAV 168 (339)
Q Consensus 127 ~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al 168 (339)
++..+..+...+.++.+.+++ ..||++||-|.---+++.++
T Consensus 91 ysv~~F~~~A~~~I~~I~~rg-k~PIlVGGTglYi~aLl~g~ 131 (468)
T PLN02748 91 FTAKDFRDHAVPLIEEILSRN-GLPVIVGGTNYYIQALVSPF 131 (468)
T ss_pred CcHHHHHHHHHHHHHHHHhcC-CCeEEEcChHHHHHHHHcCc
Confidence 366677777788888888887 78999999888766666554
No 29
>CHL00199 infC translation initiation factor 3; Provisional
Probab=25.90 E-value=58 Score=28.91 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHhhCCeeEEEEeeeCCCCCC
Q 019572 284 PGGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 317 (339)
Q Consensus 284 pgGls~~e~~~il~~l~~~vvG~DivEv~P~~D~ 317 (339)
-|-++..|++++.+.. |+|+||++|.-++
T Consensus 37 lGv~~~~eAl~~A~~~-----~lDLVeVs~~a~P 65 (182)
T CHL00199 37 LGIFTSEQAIQLAANQ-----GLDLVLVSEKSDP 65 (182)
T ss_pred CCceeHHHHHHHHHHc-----CCCEEEECCCCCC
Confidence 3568899999998875 8999999997654
No 30
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=24.44 E-value=71 Score=27.80 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHhhCCeeEEEEeeeCCCCCC
Q 019572 284 PGGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 317 (339)
Q Consensus 284 pgGls~~e~~~il~~l~~~vvG~DivEv~P~~D~ 317 (339)
-|=++..|++++.+.. ++|+||++|.-++
T Consensus 20 lgv~~~~eAl~~A~~~-----~lDLVev~~~a~P 48 (165)
T TIGR00168 20 LGIVSREEALEIAEEA-----GLDLVLISPNAKP 48 (165)
T ss_pred CCcccHHHHHHHHHHc-----CCcEEEECCCCCC
Confidence 3568899999998876 7899999997654
No 31
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=24.41 E-value=63 Score=28.39 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHhhCCeeEEEEeeeCCCCCC
Q 019572 284 PGGLSFRDVLNILHNLQADVVAADVVEFNPQRDT 317 (339)
Q Consensus 284 pgGls~~e~~~il~~l~~~vvG~DivEv~P~~D~ 317 (339)
-|=++.+|++.+.+.. |+|+||++|.-++
T Consensus 31 lGiv~~~eAL~lA~e~-----~LDLV~Ispna~P 59 (176)
T COG0290 31 LGIVSIEEALKLAEEA-----GLDLVEISPNAKP 59 (176)
T ss_pred EcceeHHHHHHHHHHc-----CCCEEEECCCCCC
Confidence 3557889999998876 8999999998654
No 32
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.34 E-value=3.9e+02 Score=26.93 Aligned_cols=92 Identities=20% Similarity=0.278 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcch-----hHhHHHHHHH------c-CCCeEEEEEecCCCCCCCCCC
Q 019572 126 GVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSIS-----FPVIRAVSEK------L-GGPVDVLHLDAHPDIYDAFEG 193 (339)
Q Consensus 126 ~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit-----~~~l~al~~~------~-~~~l~vI~~DAH~D~~~~~~g 193 (339)
|.++.+..+-+.+...++ . -+.-.++|||||-=- +|.-.++.+. | ...+..||+|+-.++.++ +
T Consensus 57 GmtP~dF~~~V~~iA~~~-g-f~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d--~ 132 (420)
T TIGR02810 57 GMTPADFRDFVETIADRI-G-FPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFTKIHLDASMGCAGD--P 132 (420)
T ss_pred CCCHHHHHHHHHHHHHHc-C-CChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCC--C
Confidence 445555555554443332 1 111258999999653 3444444321 1 235889999999998764 3
Q ss_pred CCCCChhHHHHHHhC------------CCCCcEEEEccCC
Q 019572 194 NKYSHASSFARIMEG------------GYARRLLQVGIRS 221 (339)
Q Consensus 194 ~~~~hgs~~~~~~~~------------g~~~~~v~iGiR~ 221 (339)
..++-.....|+.+. +.+.-+..||.--
T Consensus 133 ~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvIGTEv 172 (420)
T TIGR02810 133 APLDDATVAERAARLCAVAEAAATDRRGETKPVYVIGTEV 172 (420)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEecccc
Confidence 445555555554421 2234567787644
No 33
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=23.69 E-value=2.4e+02 Score=27.74 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCeeEEe-CC-CCcchhHhHHHHHHHcC-CCeEEEEEec
Q 019572 130 DRLMNVITESVKLVMEEDPLHPLVL-GG-DHSISFPVIRAVSEKLG-GPVDVLHLDA 183 (339)
Q Consensus 130 ~~~~~~i~~~v~~il~~~~~~pi~l-GG-DHsit~~~l~al~~~~~-~~l~vI~~DA 183 (339)
+.++++..+.++-+++.-+.+.|.+ || |-++++=++..++++.+ .+++|+++|-
T Consensus 10 ~nV~eA~~eRl~~if~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~ 66 (407)
T COG3969 10 ENVLEAAIERLEWIFNTFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDW 66 (407)
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 5667777777777777654444444 33 67788888888888876 3799999994
No 34
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=23.67 E-value=3.5e+02 Score=25.90 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHcCceEEEcccccc---hHHHHHHhhccCCcceEEEEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCC
Q 019572 226 GREQGKRFGVEQYEMRTFSR---DRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQAD 302 (339)
Q Consensus 226 e~~~~~~~g~~~~~~~~~~~---~~~~l~~l~~~~~~~~vYlS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~~~ 302 (339)
..+.+.+.|++++-.+.+-. .+.+++.+.. . ..|+||||-+.= ++-..-|-+..|+..++.++ .+
T Consensus 139 rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~-~-s~p~wISfT~~d---------~~~lr~Gt~l~eaa~~~~~~-~~ 206 (300)
T COG2040 139 RIEALNEAGADLLACETLPNITEAEAIVQLVQE-F-SKPAWISFTLND---------DTRLRDGTPLSEAAAILAGL-PN 206 (300)
T ss_pred HHHHHHhCCCcEEeecccCChHHHHHHHHHHHH-h-CCceEEEEEeCC---------CCccCCCccHHHHHHHHhcC-cc
Confidence 34556677888776555543 2444444432 2 589999998764 34455677778888777765 57
Q ss_pred eeEEEEeeeCCC
Q 019572 303 VVAADVVEFNPQ 314 (339)
Q Consensus 303 vvG~DivEv~P~ 314 (339)
++++-|..+.|.
T Consensus 207 iaa~gvNC~~p~ 218 (300)
T COG2040 207 IAALGVNCCHPD 218 (300)
T ss_pred hhheeeccCChh
Confidence 777777777773
No 35
>TIGR03638 cas1_ECOLI CRISPR-associated endonuclease Cas1, ECOLI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.
Probab=23.24 E-value=94 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.0
Q ss_pred eEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCC
Q 019572 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHP 185 (339)
Q Consensus 151 pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~ 185 (339)
-|+++|..++|.++++.+.++ .+.|+++|.+.
T Consensus 47 ~Ivl~g~~siT~~al~~l~~~---gI~v~~~~~~G 78 (269)
T TIGR03638 47 CLLLGPGTSVTHAAVKLLARH---GCLVVWVGEGG 78 (269)
T ss_pred EEEEeCCCccCHHHHHHHHHC---CCEEEEECCCC
Confidence 578889999999999999874 69999999666
No 36
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=23.24 E-value=70 Score=30.80 Aligned_cols=41 Identities=7% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHH
Q 019572 127 VDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAV 168 (339)
Q Consensus 127 ~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al 168 (339)
++..+..+...+.+..+.+++ ..||+.||-++---+++.++
T Consensus 72 ysa~~f~~~a~~~i~~i~~rg-k~pIlVGGTglY~~aL~~g~ 112 (308)
T COG0324 72 YSAAEFQRDALAAIDDILARG-KLPILVGGTGLYLKALLEGL 112 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-CCcEEEccHHHHHHHHHcCC
Confidence 366788888889999998887 78999999655433333333
No 37
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.19 E-value=4.2e+02 Score=26.68 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeeEEeCCCCcch-----hHhHHHHHHH------c-CCCeEEEEEecCCCCCCCCCC
Q 019572 126 GVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSIS-----FPVIRAVSEK------L-GGPVDVLHLDAHPDIYDAFEG 193 (339)
Q Consensus 126 ~~~~~~~~~~i~~~v~~il~~~~~~pi~lGGDHsit-----~~~l~al~~~------~-~~~l~vI~~DAH~D~~~~~~g 193 (339)
|.++.+..+-+.+...++ . -+.-.++|||||-=- .|.-.++.+. | ...+..||+|+-.++.++ +
T Consensus 58 GmtP~dF~~~V~~iA~~~-g-f~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d--~ 133 (421)
T PRK15052 58 GMTPADFREFVYGIADKV-G-FPRERIILGGDHLGPNCWQQEPADAAMEKSVELVKAYVRAGFSKIHLDASMSCADD--P 133 (421)
T ss_pred CCCHHHHHHHHHHHHHHc-C-CChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCC--C
Confidence 445655555555443332 1 111258999999743 2333444321 1 235889999999998764 3
Q ss_pred CCCCChhHHHHHHh-----------CCCCCcEEEEccCC
Q 019572 194 NKYSHASSFARIME-----------GGYARRLLQVGIRS 221 (339)
Q Consensus 194 ~~~~hgs~~~~~~~-----------~g~~~~~v~iGiR~ 221 (339)
..++-.....|+.+ .+...-+..||.--
T Consensus 134 ~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIGTEv 172 (421)
T PRK15052 134 IPLAPETVAERAAVLCQAAESVATDCQREQLSYVIGTEV 172 (421)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecccc
Confidence 44555555555442 13334567787543
No 38
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.82 E-value=1.8e+02 Score=25.96 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHc---CCCeEEEEEecCCCC
Q 019572 138 ESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL---GGPVDVLHLDAHPDI 187 (339)
Q Consensus 138 ~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~---~~~l~vI~~DAH~D~ 187 (339)
+.++++++.++..-.++..+..++.++++++.+.. ++.++++=||.-...
T Consensus 164 ~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~~~ 216 (265)
T cd06285 164 AAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYNDIPLV 216 (265)
T ss_pred HHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCcHHH
Confidence 34445554443345667777788888999887642 357888888866543
No 39
>PF01867 Cas_Cas1: CRISPR associated protein Cas1; InterPro: IPR002729 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents Cas1, which is a metal-dependent DNA-specific endonuclease []. Cas1 may play a role in the recognition, cleavage, and/or integration of foreign nucleic acids into CRISPRs.; PDB: 2YZS_A 3LFX_D 3PV9_E 3NKE_C 3NKD_A 3GOD_D.
Probab=21.29 E-value=89 Score=29.21 Aligned_cols=34 Identities=32% Similarity=0.385 Sum_probs=26.3
Q ss_pred eEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCC
Q 019572 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 187 (339)
Q Consensus 151 pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~ 187 (339)
-|++.|.+++|-++++.+.++ .+.|+++|-|...
T Consensus 37 ~Ivi~g~~~iSt~ai~~l~~~---gI~v~~~~~~G~~ 70 (282)
T PF01867_consen 37 SIVIFGGVSISTAAIRLLSKN---GIPVVFLDRRGRP 70 (282)
T ss_dssp EEEE-STEEEEHHHHHHHHHT---T-EEEEESTTSEE
T ss_pred EEEEcCCCCCCHHHHHHHHHC---CCcEEEeCCCCCE
Confidence 456666699999999999874 7999999988743
No 40
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=20.91 E-value=2.2e+02 Score=27.32 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCeeEEeCCCCcchhHhHHHHHHHc
Q 019572 134 NVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKL 172 (339)
Q Consensus 134 ~~i~~~v~~il~~~~~~pi~lGGDHsit~~~l~al~~~~ 172 (339)
+.+++.++.+.+++ ..=++||-|-.|.-.++++++..
T Consensus 273 ~~~a~~~~~f~~~g--~vnIvGGCCGTTPeHIraia~~v 309 (311)
T COG0646 273 EYMAEALAEFAEEG--GVNIVGGCCGTTPEHIRAIAEAV 309 (311)
T ss_pred HHHHHHHHHHHHhC--CceeeccccCCCHHHHHHHHHHh
Confidence 34444445454555 35679999999999999998764
No 41
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=20.64 E-value=90 Score=28.27 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=35.8
Q ss_pred EEEeccccCCCCCCCCCCCCCCCCCHHHHHHHHHHhhCCeeEEEEe---eeCCCC
Q 019572 264 ISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVV---EFNPQR 315 (339)
Q Consensus 264 lS~DiDvLDpa~aPgtgtp~pgGls~~e~~~il~~l~~~vvG~Div---Ev~P~~ 315 (339)
.+||.+.+.+- .......-.|||+++-+.++++... -.|+|+. |-+|..
T Consensus 141 ~~fDW~~l~~~-~~~~~~~LAGGL~p~NV~~ai~~~~--p~gvDvSSGVE~~pG~ 192 (208)
T COG0135 141 QTFDWNLLPKL-RLSKPVMLAGGLNPDNVAEAIALGP--PYGVDVSSGVESSPGI 192 (208)
T ss_pred cEECHHHhccc-cccCCEEEECCCCHHHHHHHHHhcC--CceEEeccccccCCCC
Confidence 68888888875 2222244679999999999987653 5788885 888854
No 42
>TIGR03641 cas1_HMARI CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.
Probab=20.25 E-value=1.1e+02 Score=29.59 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=28.2
Q ss_pred eEEeCCCCcchhHhHHHHHHHcCCCeEEEEEecCCCC
Q 019572 151 PLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDI 187 (339)
Q Consensus 151 pi~lGGDHsit~~~l~al~~~~~~~l~vI~~DAH~D~ 187 (339)
-|+++|.+++|-++++.+.++ .+.|+++|.+...
T Consensus 36 ~ivi~g~~~ist~al~~l~~~---gI~v~f~~~~G~~ 69 (322)
T TIGR03641 36 EIYVFGEVSLNSKALSFLSKK---GIPIHFFNYYGYY 69 (322)
T ss_pred eEEEEcCCccCHHHHHHHHHC---CCeEEEECCCCcE
Confidence 466778899999999999874 7899999977743
No 43
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=20.09 E-value=1.6e+02 Score=29.63 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=26.3
Q ss_pred eEEeCCCCcc-----hhHhHHHHHHH------c-CCCeEEEEEecCCCCCCCCCCCCCCChhHHHHHHh
Q 019572 151 PLVLGGDHSI-----SFPVIRAVSEK------L-GGPVDVLHLDAHPDIYDAFEGNKYSHASSFARIME 207 (339)
Q Consensus 151 pi~lGGDHsi-----t~~~l~al~~~------~-~~~l~vI~~DAH~D~~~~~~g~~~~hgs~~~~~~~ 207 (339)
.|+|||||-= .+|.=.|+.+. | ..-+..||+|+-.++.++. ..++-.....|+.+
T Consensus 84 ~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~Sm~ca~d~--~~L~d~~vA~Raa~ 150 (424)
T PF08013_consen 84 RIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDCSMDCAGDP--KPLPDETVAERAAR 150 (424)
T ss_dssp GEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE---C--CTS---SC--HHHHHHHHHH
T ss_pred hEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecCCCCCCCCC--CCCChHHHHHHHHH
Confidence 5899999963 23333344321 1 2458899999999997653 34455555555543
Done!