RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 019572
(339 letters)
>d1xfka_ c.42.1.1 (A:) Formimidoylglutamase HutG {Vibrio cholerae
[TaxId: 666]}
Length = 324
Score = 149 bits (376), Expect = 6e-43
Identities = 57/300 (19%), Positives = 116/300 (38%), Gaps = 42/300 (14%)
Query: 64 LLGVPLGHNSSFLQ---GPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQ 120
L+G + G AP I++A+ + P + D+G++ +
Sbjct: 38 LIGFECDAGVERNKGRTGAKHAPSLIKQALA----------NLAWHHPIPIYDLGNIRCE 87
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLG------G 174
G + ++ + ++ + +VLGG H I++ + +++
Sbjct: 88 -----GDELEQAQQECAQVIQQALPHA--RAIVLGGGHEIAWATFQGLAQHFLATGVKQP 140
Query: 175 PVDVLHLDAHPDIYDA---FEGNKYSHASSFARIMEGGYAR------RLLQVGIRSITKE 225
+ +++ DAH D+ + S + F +I + L V S T
Sbjct: 141 RIGIINFDAHFDLRTFESELAPVRPSSGTPFNQIHHFCQQQGWDFHYACLGVSRASNTPA 200
Query: 226 GREQGKRFGVEQYEMRTFSRDRQF---LENLKLGEGVKGVYISVDVDCLDPAFAPGVSHI 282
E+ + GV E + FS + + +Y+++D+D A APGVS
Sbjct: 201 LFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYLTIDLDVFPAASAPGVSAP 260
Query: 283 EPGGLSFRDVLNILHNLQA---DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 339
G+S + + ++ AD+ E+NP D +D TA +AA+L ++ +++
Sbjct: 261 AARGVSLEALAPYFDRILHYKNKLMIADIAEYNPSFD-IDQHTARLAARLCWDIANAMAE 319
>d1woha_ c.42.1.1 (A:) Agmatinase {Deinococcus radiodurans [TaxId:
1299]}
Length = 303
Score = 142 bits (357), Expect = 2e-40
Identities = 84/294 (28%), Positives = 124/294 (42%), Gaps = 12/294 (4%)
Query: 47 LKGELVRALGGAVASTSLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELN 106
+ LV+ G A + LGVP F G FAP +REA T +GK
Sbjct: 14 ARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRL 73
Query: 107 DPRVLTDVGDVPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIR 166
D GDV + + + DR+ + + P+ LGGDHS+S+P++R
Sbjct: 74 QGVTFADAGDVILPS-LEPQLAHDRITEAARQ-----VRGRCRVPVFLGGDHSVSYPLLR 127
Query: 167 AVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASSFAR-IMEGGYARRLLQVGIRSITKE 225
A ++ + V+ LDAH D D K+S++S F R + VG+R + +
Sbjct: 128 AFADV--PDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFD 185
Query: 226 GREQGKRFGVEQYEMRTFSRDRQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPG 285
+ L + VY SVDVD DPA PG S EP
Sbjct: 186 PEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPD 245
Query: 286 GLSFRDVLNILHNLQAD--VVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKI 337
GL++ + IL A+ VV D+VE P D G + ++ A+LV E ++
Sbjct: 246 GLTYAQGMKILAAAAANNTVVGLDLVELAPNLD-PTGRSELLMARLVMETLCEV 298
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 141 bits (357), Expect = 2e-40
Identities = 78/283 (27%), Positives = 129/283 (45%), Gaps = 16/283 (5%)
Query: 64 LLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQEIR 123
++G P +S+ G F P IR + G D D GD+ +
Sbjct: 26 VIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGI-DRGPGTFDLINCVDAGDINLTPFD 84
Query: 124 DCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDA 183
D ++ + + L++GGDHS++ +RAV + GP+ V+HLDA
Sbjct: 85 MNIAIDTAQSHLSG------LLKANAAFLMIGGDHSLTVAALRAV-AEQHGPLAVVHLDA 137
Query: 184 HPDIYDAFEGNKYSHASSFARIMEGGYAR--RLLQVGIR--SITKEGREQGKRFGVEQYE 239
H D AF G +Y H + F ++ ++Q+GIR + + + + GV
Sbjct: 138 HSDTNPAFYGGRYHHGTPFRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVT 197
Query: 240 MRTFSRD--RQFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILH 297
F + ++ G + VY+SVD+D +DPAFAPG PGGL R+VL +L
Sbjct: 198 ADEFGELGVGGTADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLR 257
Query: 298 NL-QADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK 339
+ V DV+E +P D G+T+++A ++ EL + ++
Sbjct: 258 CVGDLKPVGFDVMEVSPLYD-HGGITSILATEIGAELLYQYAR 299
>d2ceva_ c.42.1.1 (A:) Arginase {Bacillus caldovelox [TaxId: 33931]}
Length = 298
Score = 132 bits (332), Expect = 6e-37
Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 42/304 (13%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGDVPVQE- 121
S++GVP+ + +G P +R A E + L+ + D+GD+P+ +
Sbjct: 4 SIIGVPMDLGQTR-RGVDMGPSAMRYA-------GVIERLERLHYD--IEDLGDIPIGKA 53
Query: 122 --IRDCGVDDDRLMNVITESVKLVME------EDPLHPLVLGGDHSISFPVIRAVSEKLG 173
+ + G R + + E+ + + + PLVLGGDHSI+ + V++
Sbjct: 54 ERLHEQGDSRLRNLKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKH-Y 112
Query: 174 GPVDVLHLDAHPDIYDA-FEGNKYSHASSFARIM--------------EGGYARRLLQVG 218
+ V+ DAH D+ A + H A + ++ +G
Sbjct: 113 ERLGVIWYDAHGDVNTAETSPSGNIHGMPLAASLGFGHPALTQIGGYSPKIKPEHVVLIG 172
Query: 219 IRSITKEGREQGKRFGVEQYEMRTFSR----DRQFLENLKLGEGVKGVYISVDVDCLDPA 274
+RS+ + ++ + G++ Y M R L E GV++S+D+D LDP+
Sbjct: 173 VRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPS 232
Query: 275 FAPGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 332
APGV GGL++R+ + L + +A+ VE NP D TA VA L+
Sbjct: 233 DAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILD-ERNKTASVAVALMGS 291
Query: 333 LTAK 336
L +
Sbjct: 292 LFGE 295
>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
mitochondrial [TaxId: 9606]}
Length = 306
Score = 132 bits (332), Expect = 8e-37
Identities = 65/302 (21%), Positives = 117/302 (38%), Gaps = 37/302 (12%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELND----PRVLTDVGDVP 118
+++G P +G P IREA +S K+ D P D+ +
Sbjct: 4 AVIGAPFSQGQK-RKGVEHGPAAIREAGLMKRLSSLGCHLKDFGDLSFTPVPKDDLYNNL 62
Query: 119 VQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDV 178
+ R G+ + L V++ +V D + LGGDHS++ I + V
Sbjct: 63 IVNPRSVGLANQELAEVVSRAV-----SDGYSCVTLGGDHSLAIGTISGHARHCPDLC-V 116
Query: 179 LHLDAHPDIYDAFEG-NKYSHASSFARIMEGGYAR-----------------RLLQVGIR 220
+ +DAH DI + H + ++ + ++ +G+R
Sbjct: 117 VWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPGFSWIKPCISSASIVYIGLR 176
Query: 221 SITKEGREQGKRFGVEQYEMRTFSRDR-----QFLENLKLGEGVKGVYISVDVDCLDPAF 275
+ K + ++ + MR R + +L +G+ + +++S D+D DP
Sbjct: 177 DVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIHLSFDIDAFDPTL 236
Query: 276 APGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 333
AP GGL++R+ + I + + A D+VE NPQ T A A L ++
Sbjct: 237 APATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLAT-SEEEAKTTANLAVDV 295
Query: 334 TA 335
A
Sbjct: 296 IA 297
>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 129 bits (326), Expect = 6e-36
Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 36/302 (11%)
Query: 63 SLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVL--TDVGDVPVQ 120
++G P G P +R+A G E+ ++ D L D+ +
Sbjct: 5 GIIGAPF-SKGQPRGGVEEGPTVLRKA---GLLEKLKEQECDVKDYGDLPFADIPNDSPF 60
Query: 121 EIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPVDVLH 180
+I + + V V + LVLGGDHS++ I ++ + V+
Sbjct: 61 QIVKNPRSVGKASEQLAGKVAEVKKNG-RISLVLGGDHSLAIGSISGH-ARVHPDLGVIW 118
Query: 181 LDAHPDIYDAFEGNK-YSHASSFARIMEGG-----------------YARRLLQVGIRSI 222
+DAH DI H + +++ A+ ++ +G+R +
Sbjct: 119 VDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDV 178
Query: 223 TKEGREQGKRFGVEQYEMRTFSRD------RQFLENLKLGEGVKGVYISVDVDCLDPAFA 276
K G++ + M R + L L G + +++S DVD LDP+F
Sbjct: 179 DPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLL-GRKKRPIHLSFDVDGLDPSFT 237
Query: 277 PGVSHIEPGGLSFRDVLNILHNLQA--DVVAADVVEFNPQRD-TVDGMTAMVAAKLVREL 333
P GGL++R+ L I + + D++E NP T + +T V + L
Sbjct: 238 PATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITL 297
Query: 334 TA 335
Sbjct: 298 AC 299
>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
5693]}
Length = 298
Score = 126 bits (316), Expect = 2e-34
Identities = 48/284 (16%), Positives = 95/284 (33%), Gaps = 21/284 (7%)
Query: 60 ASTSLLGVPLG---HNSSFLQGPAFAPPRIREAIWCGSTNSTTEEGKELNDPRVLTDVGD 116
A ++G P + G P R + + + E + + ++
Sbjct: 18 ADIVIIGFPYDEGCVRNGGRAGAKKGPAAFRFFLQRLGSVNNLELNVDASHLKLYD---- 73
Query: 117 VPVQEIRDCGVDDDRLMNVITESVKLVMEEDPLHPLVLGGDHSISFPVIRAVSEKLGGPV 176
D + ES + P V+GG + S P RA+ G V
Sbjct: 74 -----AGDITASTLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFPGDV 128
Query: 177 DVLHLDAHPDIYDAFEGNKYSHASSFARIMEGGYARRLLQVGIRSITKEGREQGKRFGVE 236
V+++D+H D+ + + + F +++E V + ++ +
Sbjct: 129 GVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRD 188
Query: 237 QYEMRTFSRDRQFLENLKLGEGVKGV-----YISVDVDCLDPAFAPGVSHIEPGGLSFRD 291
+ + + + E G+ + S DVD L + PGVS GLS ++
Sbjct: 189 HQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQE 248
Query: 292 VLNILHNL--QADVVAADVVEFNPQRDTVDGMTAMVAAKLVREL 333
++ V+ D+ E NP + + + VA +
Sbjct: 249 AFDMCFLAGKTPTVMMMDMSELNPLVE--EYRSPRVAVYMFYHF 290
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 29.7 bits (66), Expect = 0.37
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 171 KLGGPVDVLHLDAHPDIYDA-----FEGNKYSHASSFARIMEGGYARRL 214
LG P DV +DA + F G+K+ + + M+ G+ + +
Sbjct: 98 SLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLI 146
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (65), Expect = 0.46
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 168 VSEKLGGPVDVLHLDAHP-----DIYDAFEGNKYSHASSFARIMEGGYARRL 214
+ G P V H+DA F NKY + R M+ GY + +
Sbjct: 94 IYSSFGFPRTVKHIDAALSEENTGKTYFFVANKYWRYDEYKRSMDPGYPKMI 145
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 26.5 bits (58), Expect = 5.5
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 25/126 (19%)
Query: 150 HPLVLGGDHSISFPVIRAVSEKLGGPVDVLHLDAHPDIYDAFEGNKYSHASS---FAR-- 204
L G + + + E G H D P + +G S A +
Sbjct: 255 QDLRFGAGDLRAAFWLVDLLES-AGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILK 313
Query: 205 -----IMEGGYARRLLQ-----VGIRSITKEGREQGKR-------FGVEQYEMRTFSRDR 247
+ L+ + +G ++ F V+ R + +R
Sbjct: 314 ERAAAFRADPEVQEALRASRLDELAQPTAADGVQELLADRTAFEDFDVDAAAARGMAFER 373
Query: 248 QFLENL 253
L+ L
Sbjct: 374 --LDQL 377
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 26.3 bits (57), Expect = 6.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 300 QADVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAK 336
DVVA +++ ++ + G+T + K +R TA+
Sbjct: 416 HMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTAR 452
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 26.0 bits (56), Expect = 8.4
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Query: 248 QFLENLKLGEGVKGVYISVDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAAD 307
L G++ V I + DP L D +
Sbjct: 376 ALACELYKVAGIRAVEIGSFLLGRDPK-TGKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 308 VVEFNPQRDTVDGMTAMVAAKLVRELTAK 336
+ G+T K++R TAK
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRHFTAK 463
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.393
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,239,603
Number of extensions: 58725
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 12
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)