BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019573
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 160 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKI 218
++ P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKI
Sbjct: 9 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 68
Query: 219 TFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 278
TFP++G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDG
Sbjct: 69 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 128
Query: 279 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 338
RT+ V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++
Sbjct: 129 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
Query: 339 P 339
P
Sbjct: 189 P 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 160 RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKI 218
++ P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKI
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 219 TFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 278
TFP++G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDG
Sbjct: 62 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 279 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 338
RT+ V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 181
Query: 339 P 339
P
Sbjct: 182 P 182
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 124/177 (70%), Gaps = 1/177 (0%)
Query: 164 PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKITFPE 222
P+ L SLE++Y G TKKMKIS ++ G+ E+ ILTIE+K GWK+GTKITFP+
Sbjct: 4 PVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPK 63
Query: 223 KGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLT 282
+G++ N IP+D++F++ +KPH++FKRDG+D++ +ISL EAL G TV + TLDGRT+
Sbjct: 64 EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123
Query: 283 VPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP 339
V VI P + GEG+P+PK P KRG+L I+F + FP ++ ++ L++++P
Sbjct: 124 VVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 166 ERTLPCSLEDLYKGTTKKMKISRD-VIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKG 224
E L +LE+LY G KK+K++R I+ R E I+ +EIKPGWK GTK+T+ +G
Sbjct: 7 EVPLLVTLEELYLGKRKKIKVTRKRFIEHKVR--NEENIVEVEIKPGWKDGTKLTYSGEG 64
Query: 225 N-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 283
+ E P DL+ II K H F RD L+ I LV ALTG+T +TTLD R L +
Sbjct: 65 DQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI 124
Query: 284 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLK 335
PI +++P +++ EG PI +P ++G+L ++F+I FP LT EQK +K
Sbjct: 125 PIKEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIK 176
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 165 IERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKG 224
++ LP SLEDL+ G K KI R G T+ + I++KPGWK GTKIT+ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 225 N-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 283
+ + L F+I EK H FKRDG+DL+ T +S E+L G++ + T+DGRTL +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 284 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGL 334
+ P+ G+GMP PK PS+RGNL +K+ + +P L QK +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%), Gaps = 5/171 (2%)
Query: 165 IERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKG 224
++ LP SLEDL+ G K KI R G T+ + I++KPGWK GTKIT+ +G
Sbjct: 3 VQVNLPVSLEDLFVGKKKSFKIGRK--GPHGASEKTQ--IDIQLKPGWKAGTKITYKNQG 58
Query: 225 N-ELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTV 283
+ + L F+I EK H FKRDG+DL+ T +S E+L G++ + T+DGRTL +
Sbjct: 59 DYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPL 118
Query: 284 PINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGL 334
+ P+ G+GMP PK PS+RGNL +K+ + +P L QK +
Sbjct: 119 SRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 103/196 (52%), Gaps = 20/196 (10%)
Query: 152 GEGSANALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTT--------EEI 203
G+G R+ P+ + D+ GT D+ID R + +I
Sbjct: 62 GQGIKFVTRQMGPMIQRFQTEC-DVCHGTG-------DIIDPKDRCKSCNGKKVENERKI 113
Query: 204 LTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLV 263
L + ++PG K G +I F + ++ +VIP D++FI+ E+PH FKRDG+DLV +I L+
Sbjct: 114 LEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLL 173
Query: 264 EALTGYTVQLTTLDGRTLTVPI--NSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIK 321
A+ G L + G L V I VI+P +VI+G+GMPIPK GNL IKF IK
Sbjct: 174 TAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY-GGYGNLIIKFTIK 232
Query: 322 FPSKLTTEQKSGLKRL 337
P T +++ LK+L
Sbjct: 233 DPENHFTSEEN-LKKL 247
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 58/68 (85%)
Query: 3 VDYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQK 62
VDYY++L V R A E +KKAYRKLA+KWHPDKNP NK++AE +FKQ++EAY+VLSD +K
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 63 RAVYDQYG 70
R +YD+YG
Sbjct: 69 RDIYDRYG 76
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 5 YYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRA 64
YY+IL V R+A +D+KKAYR+ A++WHPDKNP+NK+ AE KFK+++EAY+VLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 65 VYDQYGEEGLKG 76
+YD+YG EGL G
Sbjct: 64 IYDRYGREGLTG 75
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 61/75 (81%), Gaps = 2/75 (2%)
Query: 2 GVDYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQ 61
G DYY+ L + R A +E++K+AYR+ A+++HPDKN + AE KFK+I+EAYDVLSDP+
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN--KEPGAEEKFKEIAEAYDVLSDPR 59
Query: 62 KRAVYDQYGEEGLKG 76
KR ++D+YGEEGLKG
Sbjct: 60 KREIFDRYGEEGLKG 74
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 93.6 bits (231), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 58/67 (86%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
+YY++L V +A ED+KKAYRKLA++WHPDKNP+NK++AE KFK +SEAY+VLSD +KR
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 64 AVYDQYG 70
++YD+ G
Sbjct: 70 SLYDRAG 76
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY+IL V + A+E +++KAY++LAMK+HPD+N + K+AEAKFK+I EAY+VL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYGEEGLK 75
A YDQYG +
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 1/72 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY+IL V + A+E +++KAY++LAMK+HPD+N + K+AEAKFK+I EAY+VL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYGEEGLK 75
A YDQYG +
Sbjct: 63 AAYDQYGHAAFE 74
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY+IL V + A+E +++KAY++LAMK+HPD+N + K+AEAKFK+I EAY+VL+D QKR
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAYEVLTDSQKR 62
Query: 64 AVYDQYG 70
A YDQYG
Sbjct: 63 AAYDQYG 69
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 54/68 (79%), Gaps = 4/68 (5%)
Query: 5 YYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRA 64
YY +L V NA +E+LKKAYRKLA+K+HPDKNPN + KFKQIS+AY+VLSD +KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGE----KFKQISQAYEVLSDAKKRE 63
Query: 65 VYDQYGEE 72
+YD+ GE+
Sbjct: 64 LYDKGGEQ 71
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 2 GVDYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQ 61
G Y +L +D+NA +D+KK+YRKLA+K+HPDKNP+N + A+ KFK+I+ A+ +L+D
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAAD-KFKEINNAHAILTDAT 74
Query: 62 KRAVYDQYGEEGL 74
KR +YD+YG GL
Sbjct: 75 KRNIYDKYGSLGL 87
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY+IL V R A +EDLKKAYR+LA+K+HPDK N+ A FK I AY VLS+P+KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDK--NHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 64 AVYDQYG 70
YDQ+G
Sbjct: 66 KQYDQFG 72
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 5 YYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRA 64
YY +L V +A + +LKKAYRK+A+K+HPDKNP D +FKQIS+AY+VLSD +KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNP----DGAEQFKQISQAYEVLSDEKKRQ 65
Query: 65 VYDQYGEE 72
+YDQ GEE
Sbjct: 66 IYDQGGEE 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 61/328 (18%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY IL V + +K AYR+LA K+HPD + N DAEAKFK ++EA++VL D Q+R
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRR 86
Query: 64 AVYDQYGEEGLKGQMXXXXXXXXXXXXXXXXXXTSFRFNTRNPEDIXXXXXXXXXXXXDM 123
A YDQ + RN D
Sbjct: 87 AEYDQL-------------------------------WQHRN----------------DP 99
Query: 124 GGSRASAS---GFPRGMFGDDIFASFNRGSAGEGSANALRKAAPIERTLPCSLEDLYKGT 180
G R + + + F D IF+S A + + +E + LE+
Sbjct: 100 GFGRQRQTHEQSYSQQDFDD-IFSSMFGQQAHQRRRQHAARGHDLEIEVAVFLEETLAEQ 158
Query: 181 TKKMKISRDVIDASGRPNT-TEEILTIEIKPGWKKGTKITFPEKGNELRNVIPS-DLIFI 238
T+ + + V + G + T + L ++I G G +I +G N P+ DL +
Sbjct: 159 TRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLV 218
Query: 239 IDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTL-DGRTLTVPINSVISPTYEEVI 297
I PH LF G++L + ++ EA G V + TL + LTVP S I
Sbjct: 219 IHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLR--I 276
Query: 298 KGEGMPIPKEPSKRGNLRIKFNIKFPSK 325
KG+G+ + G+L I P+K
Sbjct: 277 KGKGL---VSKTHTGDLFAVIKIVMPTK 301
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 5/76 (6%)
Query: 5 YYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRA 64
YY IL V ++A E +KKA+ KLAMK+HPDKN + DAEAKF++I+EAY+ LSD +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK 66
Query: 65 VYDQYGEEGL---KGQ 77
YD G KGQ
Sbjct: 67 EYDTLGHSAFTSGKGQ 82
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 1 MGVDYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDP 60
+ D Y++L V R A + D+KKAY+KLA +WHPDKN + AE +F QIS+AY++LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYEILSNE 72
Query: 61 QKRAVYDQYG 70
+KR YD YG
Sbjct: 73 EKRTNYDHYG 82
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY+IL V RNA ++++KKAY +LA K+HPD N ++ K A+ KF Q++EAY+VLSD KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKR 66
Query: 64 AVYDQYG 70
YD YG
Sbjct: 67 KQYDAYG 73
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 6 YKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAV 65
Y +L V +A E++LKK YRK A+K+HPDK + + KFK+ISEA+++L+DPQKR +
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQKREI 66
Query: 66 YDQYGEEGLK 75
YDQYG E +
Sbjct: 67 YDQYGLEAAR 76
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
++Y +L V + A ++++A++KLA+K HPDKNPNN +A F +I+ AY+VL D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLR 80
Query: 64 AVYDQYGEEGLK 75
YD+YGE+GL+
Sbjct: 81 KKYDKYGEKGLE 92
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
++Y +L V + A ++++A++KLA+K HPDKNPNN +A F +I+ AY+VL D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRAYEVLKDEDLR 61
Query: 64 AVYDQYGEEGLK 75
YD+YGE+GL+
Sbjct: 62 KKYDKYGEKGLE 73
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 247 FKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPI--NSVISPTYEEVIKGEGMPI 304
FKRDG+DLV +I L+ A+ G L + G L V I VI+P +VI+G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 305 PKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL 337
PK GNL IKF IKFP T +++ LK+L
Sbjct: 62 PKY-GGYGNLIIKFTIKFPENHFTSEEN-LKKL 92
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPD--KNPNNKKDAEAKFKQISEAYDVLSDPQ 61
DYYKIL V RNAK++++ KAYRKLA++WHPD +N KK AE KF I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAVYD 67
R +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPD--KNPNNKKDAEAKFKQISEAYDVLSDPQ 61
DYYKIL V RNAK++++ KAYRKLA++WHPD +N KK AE KF I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 62 KRAVYD 67
R +D
Sbjct: 443 MRKKFD 448
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 65.1 bits (157), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY I+ V + +K AYR+LA K+HPD + + DAEA+FK+++EA++VLSD Q+R
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS--KEPDAEARFKEVAEAWEVLSDEQRR 63
Query: 64 AVYDQ 68
A YDQ
Sbjct: 64 AEYDQ 68
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 51.6 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 6 YKILQVDRNA-KEEDLKKAYRKLAMKWHPD--KNPNNKKDAEAKFKQISEAYDVLSDPQK 62
Y +L+V+R ++ L KAYR LA K HPD KN K AE +F+ I+ AY+ L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 63 RAVYDQY 69
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKR 63
DYY +L D + E + ++ A++ HPDK+P N K E F+++ +A ++L++ + R
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVET-FQKLQKAKEILTNEESR 79
Query: 64 AVYDQY 69
A YD +
Sbjct: 80 ARYDHW 85
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNN-----KKDAEAKFKQISEAYDVLS 58
D+Y IL D +A DLK+ Y+KL + +HPDK + ++ KF +I +A+ +L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 59 DPQKRAVYD 67
+ + + YD
Sbjct: 77 NEETKKKYD 85
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNN-----KKDAEAKFKQISEAYDVLS 58
D+Y IL D +A DLK+ Y+KL + +HPDK + ++ KF +I +A+ +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 59 DPQKRAVYD-QYGEEGLK 75
+ + + YD Q E+ L+
Sbjct: 71 NEETKREYDLQRCEDDLR 88
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 6 YKILQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAV 65
Y +L V A + +K AY + +HPD+N + + AE +F +IS+AY VL R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAE-RFTRISQAYVVLGSATLRRK 78
Query: 66 YDQ--YGEEGLKG 76
YD+ +E L+G
Sbjct: 79 YDRGLLSDEDLRG 91
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 17 EEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEG 73
E + KK R+L +KWHPDKNP N A FK + + L +K+A DQ +
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNADRA 83
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 4 DYYKILQVDRNAKEEDLKKAYRKLAMKWHPDK 35
D + +L V A +++ KAYRKLA+ HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 20 LKKAYRKLAMKWHPDK----NPNNKKDAEAKFKQISEAYDVLSDPQKRAVY 66
L +R L ++HPD + ++ A + QI++AY L DP +RA Y
Sbjct: 23 LSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEY 73
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 20 LKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVY 66
L+K YR+L + HPD + + +++AY L DP +R+ Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 77
>pdb|2VUG|A Chain A, The Structure Of An Archaeal Homodimeric Rna Ligase
pdb|2VUG|B Chain B, The Structure Of An Archaeal Homodimeric Rna Ligase
Length = 389
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 173 LEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIE-IKPGWKKGTKITFPEKGNELRNVI 231
+ +L+K K+++ + ++ + EI+ IE IK GW+ K +P+ NE+R +I
Sbjct: 323 IHELFKVRVKRIETAYKMVTHFEKLGLKIEIVDIEEIKDGWRITFKRLYPDATNEIRELI 382
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 20 LKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVY 66
L+K YR+L + HPD + + +++AY L DP +R+ Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSST----LNQAYHTLKDPLRRSQY 69
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|B Chain B, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|C Chain C, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|D Chain D, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|E Chain E, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins.
pdb|4AFL|F Chain F, The Crystal Structure Of The Ing4 Dimerization Domain
Reveals The Functional Organization Of The Ing Family
Of Chromatin Binding Proteins
Length = 104
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 9 LQVDRNAKEEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAY 54
L D + + EDLK KLA ++ + ++ A KQI EAY
Sbjct: 26 LXRDLDQRTEDLKAEIDKLATEYXSSARSLSSEEKLALLKQIQEAY 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,559,048
Number of Sequences: 62578
Number of extensions: 391630
Number of successful extensions: 905
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 49
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)