Query 019575
Match_columns 339
No_of_seqs 202 out of 457
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 99.9 2.4E-23 5.1E-28 197.2 28.1 293 14-322 20-325 (345)
2 PF06027 DUF914: Eukaryotic pr 99.9 1.6E-22 3.4E-27 194.2 25.7 271 34-322 39-310 (334)
3 PF08449 UAA: UAA transporter 99.9 1.1E-21 2.3E-26 187.1 29.9 280 24-320 17-300 (303)
4 KOG3912 Predicted integral mem 99.9 1E-22 2.2E-27 186.4 18.0 297 11-315 6-332 (372)
5 PLN00411 nodulin MtN21 family 99.9 3.6E-20 7.8E-25 180.4 34.0 293 15-326 17-337 (358)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 4.2E-20 9E-25 175.7 27.3 272 24-317 18-293 (302)
7 PF04142 Nuc_sug_transp: Nucle 99.9 3.2E-20 7E-25 171.8 21.0 220 76-307 15-243 (244)
8 TIGR00950 2A78 Carboxylate/Ami 99.8 9.6E-18 2.1E-22 155.2 29.7 256 23-312 4-259 (260)
9 PRK11453 O-acetylserine/cystei 99.8 2.7E-17 5.9E-22 156.4 31.7 272 16-318 12-288 (299)
10 PTZ00343 triose or hexose phos 99.8 2.8E-17 6.1E-22 159.9 30.6 288 13-317 54-348 (350)
11 PRK11272 putative DMT superfam 99.8 7E-16 1.5E-20 146.2 32.3 263 21-317 21-285 (292)
12 PRK15430 putative chlorampheni 99.7 1.6E-15 3.4E-20 144.1 28.3 267 21-319 21-287 (296)
13 PRK10532 threonine and homoser 99.7 2.8E-14 6.1E-19 135.4 30.5 257 22-318 26-282 (293)
14 PRK11689 aromatic amino acid e 99.7 1.9E-14 4.2E-19 136.6 28.6 264 22-317 18-287 (295)
15 KOG1583 UDP-N-acetylglucosamin 99.7 1.3E-16 2.8E-21 146.2 8.8 218 93-316 79-313 (330)
16 TIGR03340 phn_DUF6 phosphonate 99.7 8.1E-14 1.8E-18 131.3 26.0 212 84-314 69-280 (281)
17 TIGR00688 rarD rarD protein. T 99.6 8E-13 1.7E-17 122.7 24.4 154 20-188 14-167 (256)
18 COG0697 RhaT Permeases of the 99.5 2.3E-11 5E-16 113.0 30.7 209 85-318 77-288 (292)
19 KOG2765 Predicted membrane pro 99.5 2.2E-13 4.8E-18 129.8 16.6 294 15-323 21-396 (416)
20 TIGR00776 RhaT RhaT L-rhamnose 99.5 2.1E-11 4.6E-16 115.8 25.8 261 24-315 17-286 (290)
21 KOG1443 Predicted integral mem 99.5 9.7E-12 2.1E-16 115.9 20.4 219 84-315 90-313 (349)
22 COG2962 RarD Predicted permeas 99.4 1.3E-10 2.7E-15 108.2 24.1 256 34-322 31-288 (293)
23 KOG1441 Glucose-6-phosphate/ph 99.4 2.9E-12 6.4E-17 122.2 10.0 272 25-318 34-308 (316)
24 PF03151 TPT: Triose-phosphate 99.3 3E-11 6.6E-16 103.0 14.2 150 168-317 1-153 (153)
25 KOG1580 UDP-galactose transpor 99.3 9.6E-11 2.1E-15 105.8 16.8 219 84-315 91-311 (337)
26 KOG1581 UDP-galactose transpor 99.2 3.6E-09 7.7E-14 98.9 22.0 219 85-319 90-315 (327)
27 TIGR00803 nst UDP-galactose tr 99.2 8.4E-10 1.8E-14 100.5 14.5 214 87-314 8-221 (222)
28 KOG1444 Nucleotide-sugar trans 99.2 6.6E-09 1.4E-13 98.0 20.7 275 19-320 23-303 (314)
29 KOG1582 UDP-galactose transpor 99.1 2.6E-09 5.7E-14 98.3 17.0 220 86-319 114-334 (367)
30 PF13536 EmrE: Multidrug resis 99.0 1.8E-09 3.8E-14 88.3 9.9 105 42-153 2-109 (113)
31 COG5006 rhtA Threonine/homoser 99.0 1.2E-07 2.5E-12 86.8 20.0 251 23-313 27-278 (292)
32 KOG4510 Permease of the drug/m 99.0 1.7E-09 3.7E-14 99.4 7.8 205 84-312 106-320 (346)
33 PF00892 EamA: EamA-like trans 98.9 2E-08 4.4E-13 81.5 11.4 118 23-148 6-124 (126)
34 KOG4314 Predicted carbohydrate 98.8 4.3E-08 9.2E-13 86.7 11.5 212 86-318 61-277 (290)
35 KOG1442 GDP-fucose transporter 98.8 5.7E-09 1.2E-13 96.3 5.0 212 89-320 117-330 (347)
36 KOG2766 Predicted membrane pro 98.8 1.5E-09 3.2E-14 99.2 -0.0 256 34-318 44-300 (336)
37 COG5070 VRG4 Nucleotide-sugar 98.6 3.6E-06 7.9E-11 75.9 16.2 211 93-318 83-297 (309)
38 TIGR00950 2A78 Carboxylate/Ami 98.4 1.1E-05 2.4E-10 74.5 15.1 120 18-145 138-259 (260)
39 PF05653 Mg_trans_NIPA: Magnes 98.4 6E-06 1.3E-10 79.0 12.8 76 76-154 51-126 (300)
40 PRK15051 4-amino-4-deoxy-L-ara 98.3 7.8E-06 1.7E-10 66.8 10.8 63 87-149 46-108 (111)
41 COG2510 Predicted membrane pro 98.3 4.7E-06 1E-10 69.0 9.3 132 11-149 6-138 (140)
42 PF06800 Sugar_transport: Suga 98.3 0.00019 4E-09 67.4 20.4 113 75-188 42-159 (269)
43 PF03151 TPT: Triose-phosphate 98.3 2.9E-05 6.3E-10 65.9 13.5 129 19-147 11-150 (153)
44 PLN00411 nodulin MtN21 family 98.1 7.6E-05 1.6E-09 73.1 15.8 69 85-153 263-331 (358)
45 PRK10532 threonine and homoser 98.0 0.00045 9.8E-09 65.5 16.9 62 89-150 220-281 (293)
46 PRK11689 aromatic amino acid e 97.9 0.00037 8E-09 66.2 15.0 66 85-150 222-287 (295)
47 PRK11272 putative DMT superfam 97.9 0.0005 1.1E-08 65.1 15.8 62 89-150 224-285 (292)
48 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00024 5.3E-09 67.5 13.2 108 36-150 176-288 (290)
49 TIGR03340 phn_DUF6 phosphonate 97.9 0.00013 2.8E-09 68.7 10.9 64 84-147 217-280 (281)
50 KOG2922 Uncharacterized conser 97.7 3.8E-05 8.3E-10 72.8 4.6 69 87-155 73-141 (335)
51 PRK15430 putative chlorampheni 97.7 0.0018 3.8E-08 61.6 15.8 68 84-151 219-286 (296)
52 PRK10650 multidrug efflux syst 97.5 0.0007 1.5E-08 55.1 9.2 60 89-148 46-106 (109)
53 TIGR00817 tpt Tpt phosphate/ph 97.5 0.00058 1.3E-08 64.9 10.0 59 91-149 234-292 (302)
54 PRK11453 O-acetylserine/cystei 97.5 0.0046 9.9E-08 58.8 15.9 63 89-151 226-288 (299)
55 PRK02971 4-amino-4-deoxy-L-ara 97.4 0.00089 1.9E-08 56.2 9.0 62 89-150 59-122 (129)
56 PRK10452 multidrug efflux syst 97.4 0.0016 3.6E-08 53.9 10.1 65 88-152 40-105 (120)
57 COG2076 EmrE Membrane transpor 97.4 0.0013 2.8E-08 53.1 9.1 61 89-149 41-102 (106)
58 PRK09541 emrE multidrug efflux 97.4 0.0016 3.5E-08 53.1 9.8 62 89-150 41-103 (110)
59 PRK11431 multidrug efflux syst 97.4 0.0015 3.3E-08 52.8 9.5 61 89-149 40-101 (105)
60 COG2510 Predicted membrane pro 97.3 0.0045 9.7E-08 51.5 11.7 131 169-314 5-136 (140)
61 PF00892 EamA: EamA-like trans 97.2 0.0029 6.3E-08 50.8 9.5 45 273-317 82-126 (126)
62 PRK13499 rhamnose-proton sympo 97.2 0.17 3.7E-06 49.4 22.3 109 75-183 70-190 (345)
63 PTZ00343 triose or hexose phos 97.1 0.011 2.4E-07 57.7 14.3 64 85-148 283-346 (350)
64 COG0697 RhaT Permeases of the 97.0 0.035 7.5E-07 51.2 16.0 67 84-150 220-287 (292)
65 PF00893 Multi_Drug_Res: Small 97.0 0.003 6.5E-08 49.8 6.9 53 88-140 39-92 (93)
66 TIGR00688 rarD rarD protein. T 96.8 0.07 1.5E-06 49.3 15.7 138 168-317 3-142 (256)
67 PF08449 UAA: UAA transporter 96.5 0.034 7.4E-07 53.0 12.1 129 18-149 164-296 (303)
68 TIGR00803 nst UDP-galactose tr 96.5 0.0072 1.6E-07 54.8 6.8 129 14-146 87-220 (222)
69 PF13536 EmrE: Multidrug resis 96.4 0.071 1.5E-06 43.2 11.7 45 276-320 65-109 (113)
70 COG2962 RarD Predicted permeas 95.8 0.26 5.7E-06 46.6 13.5 135 166-317 6-144 (293)
71 COG5006 rhtA Threonine/homoser 95.8 0.054 1.2E-06 50.3 8.7 54 93-146 225-278 (292)
72 PF04657 DUF606: Protein of un 95.8 0.25 5.5E-06 41.8 12.3 128 13-147 3-138 (138)
73 PF06800 Sugar_transport: Suga 95.2 0.29 6.3E-06 46.1 11.7 96 34-138 160-255 (269)
74 PF05653 Mg_trans_NIPA: Magnes 94.5 0.17 3.8E-06 48.4 8.4 36 282-317 87-122 (300)
75 PRK10452 multidrug efflux syst 94.5 0.13 2.9E-06 42.5 6.5 35 281-315 67-101 (120)
76 PRK13499 rhamnose-proton sympo 94.4 1 2.2E-05 44.1 13.5 80 71-151 253-342 (345)
77 COG4975 GlcU Putative glucose 94.2 0.0037 8.1E-08 57.5 -3.5 147 33-189 23-174 (288)
78 PF06027 DUF914: Eukaryotic pr 93.7 1.2 2.5E-05 43.4 12.5 118 31-152 190-307 (334)
79 PF10639 UPF0546: Uncharacteri 93.6 0.18 3.9E-06 41.3 5.5 55 93-147 56-111 (113)
80 COG2076 EmrE Membrane transpor 92.7 1.5 3.2E-05 35.5 9.5 37 279-315 65-101 (106)
81 PRK15051 4-amino-4-deoxy-L-ara 92.1 0.45 9.7E-06 38.7 6.1 33 283-315 75-107 (111)
82 PRK09541 emrE multidrug efflux 92.1 2.1 4.6E-05 34.8 10.0 36 280-315 66-101 (110)
83 KOG1441 Glucose-6-phosphate/ph 91.8 0.39 8.5E-06 46.3 6.1 61 89-149 246-306 (316)
84 PRK10650 multidrug efflux syst 91.6 3.3 7.1E-05 33.7 10.5 36 279-314 70-105 (109)
85 PRK02971 4-amino-4-deoxy-L-ara 91.1 1.8 3.8E-05 36.3 8.7 33 284-316 87-121 (129)
86 PRK11431 multidrug efflux syst 91.0 3 6.6E-05 33.6 9.7 36 280-315 65-100 (105)
87 PF06379 RhaT: L-rhamnose-prot 90.8 1.9 4.1E-05 41.9 9.7 146 36-183 31-189 (344)
88 COG3238 Uncharacterized protei 88.8 9.6 0.00021 32.8 11.5 112 33-148 29-144 (150)
89 KOG4510 Permease of the drug/m 87.8 0.12 2.7E-06 48.4 -0.7 60 280-339 131-191 (346)
90 PF04142 Nuc_sug_transp: Nucle 87.5 1.1 2.3E-05 41.7 5.3 47 276-322 48-94 (244)
91 KOG1583 UDP-N-acetylglucosamin 86.1 1.9 4.1E-05 40.8 6.1 134 11-149 168-313 (330)
92 KOG1580 UDP-galactose transpor 83.2 1.5 3.3E-05 40.5 4.0 65 85-149 248-312 (337)
93 PF06379 RhaT: L-rhamnose-prot 80.3 24 0.00053 34.4 11.2 29 299-327 135-163 (344)
94 PF00893 Multi_Drug_Res: Small 78.8 3.5 7.5E-05 32.3 4.2 29 280-308 65-93 (93)
95 KOG2765 Predicted membrane pro 76.9 6.6 0.00014 38.7 6.3 67 83-151 325-391 (416)
96 KOG1582 UDP-galactose transpor 76.7 18 0.0004 34.3 8.9 138 6-149 187-331 (367)
97 KOG1581 UDP-galactose transpor 76.5 4.2 9.1E-05 38.9 4.7 76 69-147 235-310 (327)
98 COG4975 GlcU Putative glucose 75.8 1.8 3.8E-05 40.3 2.0 103 38-149 178-284 (288)
99 KOG2922 Uncharacterized conser 75.1 0.24 5.2E-06 47.5 -3.9 114 163-317 17-136 (335)
100 COG5070 VRG4 Nucleotide-sugar 74.5 21 0.00046 33.0 8.4 126 24-151 171-297 (309)
101 PF07857 DUF1632: CEO family ( 73.5 12 0.00026 35.1 6.9 19 299-317 116-134 (254)
102 PF04246 RseC_MucC: Positive r 71.7 8.3 0.00018 32.1 5.0 48 270-317 65-112 (135)
103 KOG2234 Predicted UDP-galactos 70.9 1.1E+02 0.0024 30.0 13.5 136 11-151 182-323 (345)
104 PF10710 DUF2512: Protein of u 68.7 53 0.0011 27.7 9.2 77 245-324 35-112 (136)
105 PF04657 DUF606: Protein of un 67.2 75 0.0016 26.7 15.1 52 169-226 3-54 (138)
106 KOG4314 Predicted carbohydrate 59.9 4.9 0.00011 36.3 1.4 44 275-318 83-126 (290)
107 PF01914 MarC: MarC family int 56.4 46 0.00099 29.9 7.1 47 292-338 64-110 (203)
108 KOG1444 Nucleotide-sugar trans 54.0 40 0.00086 32.5 6.5 71 77-150 230-300 (314)
109 PHA03049 IMV membrane protein; 52.0 19 0.00042 26.5 3.1 18 302-319 7-25 (68)
110 PF04342 DUF486: Protein of un 50.4 34 0.00073 27.7 4.5 33 279-311 70-102 (108)
111 COG0341 SecF Preprotein transl 49.9 2.5E+02 0.0053 27.1 11.6 23 127-149 129-151 (305)
112 COG3169 Uncharacterized protei 48.0 66 0.0014 25.8 5.8 39 274-312 72-110 (116)
113 PF04342 DUF486: Protein of un 47.3 24 0.00051 28.5 3.3 29 117-145 75-103 (108)
114 PF11044 TMEMspv1-c74-12: Plec 45.3 8 0.00017 26.1 0.3 9 314-322 23-31 (49)
115 KOG1623 Multitransmembrane pro 44.8 32 0.00068 32.0 4.2 106 111-224 76-182 (243)
116 PF11139 DUF2910: Protein of u 44.5 2.3E+02 0.005 25.3 11.5 66 36-101 64-138 (214)
117 PF13038 DUF3899: Domain of un 42.2 27 0.00059 27.0 2.9 19 301-319 6-24 (92)
118 COG3169 Uncharacterized protei 41.3 66 0.0014 25.8 4.8 30 119-148 84-113 (116)
119 PF05961 Chordopox_A13L: Chord 38.9 45 0.00097 24.7 3.3 19 301-319 6-25 (68)
120 PRK10862 SoxR reducing system 38.6 59 0.0013 28.0 4.7 14 273-286 75-88 (154)
121 PRK02237 hypothetical protein; 38.5 98 0.0021 25.1 5.6 46 107-152 62-107 (109)
122 COG3086 RseC Positive regulato 37.2 74 0.0016 27.2 4.9 11 289-299 97-107 (150)
123 PF02487 CLN3: CLN3 protein; 37.2 1.7E+02 0.0037 29.3 8.3 61 119-194 77-137 (402)
124 PF15108 TMEM37: Voltage-depen 37.1 1.5E+02 0.0033 25.8 6.8 78 136-219 93-170 (184)
125 PRK02935 hypothetical protein; 35.1 52 0.0011 26.6 3.4 55 127-181 6-60 (110)
126 PF10639 UPF0546: Uncharacteri 33.6 50 0.0011 27.0 3.3 34 280-313 77-110 (113)
127 PF07857 DUF1632: CEO family ( 33.6 4E+02 0.0088 24.9 12.7 111 82-192 59-208 (254)
128 COG3238 Uncharacterized protei 32.6 3.2E+02 0.007 23.5 13.1 49 165-219 3-51 (150)
129 PRK11111 hypothetical protein; 31.2 2E+02 0.0044 26.1 7.2 19 292-310 70-88 (214)
130 PF11023 DUF2614: Protein of u 31.1 80 0.0017 25.8 4.0 56 127-182 5-60 (114)
131 PF02694 UPF0060: Uncharacteri 30.9 1.3E+02 0.0028 24.4 5.1 44 109-152 62-105 (107)
132 KOG4783 Uncharacterized conser 30.6 1.8E+02 0.004 23.1 5.8 30 301-330 70-100 (102)
133 PRK14766 lipoprotein signal pe 30.2 37 0.00081 30.6 2.2 20 319-338 181-200 (201)
134 COG2211 MelB Na+/melibiose sym 30.2 6.2E+02 0.013 26.0 11.3 53 120-181 289-343 (467)
135 KOG1442 GDP-fucose transporter 30.0 49 0.0011 31.6 2.9 110 34-148 211-325 (347)
136 PRK10734 putative calcium/sodi 29.3 1.1E+02 0.0024 29.6 5.4 29 291-319 118-146 (325)
137 PF04971 Lysis_S: Lysis protei 26.0 85 0.0018 23.3 3.0 22 305-326 42-63 (68)
138 PRK13183 psbN photosystem II r 25.7 1.3E+02 0.0027 20.6 3.5 13 326-338 34-46 (46)
139 PF07172 GRP: Glycine rich pro 25.1 1.1E+02 0.0023 24.2 3.7 11 328-338 32-42 (95)
140 PRK13108 prolipoprotein diacyl 25.1 88 0.0019 31.9 4.0 30 297-326 254-283 (460)
141 PF09930 DUF2162: Predicted tr 24.8 5.5E+02 0.012 23.6 11.7 123 203-330 64-194 (224)
142 PF03672 UPF0154: Uncharacteri 24.2 1.2E+02 0.0027 22.2 3.6 29 169-199 3-31 (64)
143 PF08370 PDR_assoc: Plant PDR 23.5 84 0.0018 23.1 2.6 27 77-104 30-56 (65)
144 COG4711 Predicted membrane pro 23.3 4.4E+02 0.0096 24.0 7.6 27 122-148 113-139 (217)
145 KOG1443 Predicted integral mem 22.2 7.4E+02 0.016 24.2 11.5 52 97-148 262-313 (349)
146 PRK15086 ethanolamine utilizat 21.8 95 0.0021 30.6 3.4 10 300-309 340-349 (372)
147 PF10361 DUF2434: Protein of u 21.6 5.1E+02 0.011 24.8 8.0 58 165-226 47-110 (296)
148 COG3763 Uncharacterized protei 21.6 2.3E+02 0.0051 21.1 4.6 33 166-200 7-39 (71)
149 PF10754 DUF2569: Protein of u 20.4 5.2E+02 0.011 21.7 8.1 76 110-189 62-143 (149)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.4e-23 Score=197.17 Aligned_cols=293 Identities=22% Similarity=0.251 Sum_probs=213.5
Q ss_pred HHHhhhhhhh-hhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCC-----CC--CCCCCCCch-hHHHHHHHHHH
Q 019575 14 LNSMAGQAAA-VILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPAS-----QE--VSSSSRYPS-FVTLALVYLVL 84 (339)
Q Consensus 14 ~~~~~g~~~~-~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~-----~~--~~~~~~~~~-~~~l~~~~~~~ 84 (339)
+..+..|..+ +++.|+....++.+..-+|-+-.++.-.+.++++...+. ++ .+.+..... .+.....++ .
T Consensus 20 l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v-P 98 (345)
T KOG2234|consen 20 LIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV-P 98 (345)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH-H
Confidence 3444445555 899999998887777778888888887777766654332 11 111100000 112333333 3
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCC-CC-Ccch
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEG-PS-KVSK 162 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~-~~-~~~~ 162 (339)
.++++.||.+++.++.|+|++|+++..|.+...|++|+++++|||++++||.+++++++|+++++++..++. +. +.+.
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~ 178 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSA 178 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcc
Confidence 456666666888999999999999999999999999999999999999999999999999999984433221 11 2335
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccch
Q 019575 163 WKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQS-FGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGK 241 (339)
Q Consensus 163 ~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~-~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~ 241 (339)
.+.+.|+...+.++.++|+ .+.++||++|+.. ..++.++|.|. ++.++.+++.... |++... ..+|.+|.
T Consensus 179 ~n~~~G~~avl~~c~~Sgf----AgvYfEkiLK~s~~s~wi~NiqL~~--~g~~f~~l~~~~~-d~~~i~--~~gff~G~ 249 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGF----AGVYFEKILKGSNVSLWIRNIQLYF--FGILFNLLTILLQ-DGEAIN--EYGFFYGY 249 (345)
T ss_pred cchhhhHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHHHHH--HHHHHHHHHHhhc-cccccc--cCCccccc
Confidence 6789999999999999999 6666888776543 44566677654 7777777777655 666565 46788886
Q ss_pred hHHHHHHHHHHHHHHH-HHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccc
Q 019575 242 VSYVMVIVWTAVSWQV-CSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 242 ~~~~~~lv~~~v~~q~-~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
.. .+|..+..+. -++-+.-+.+++|+++++...++.+.++.+.++.+|+-++|..-..|..+++ .+++.|+.+
T Consensus 250 s~----~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi--~Si~lY~~~ 323 (345)
T KOG2234|consen 250 SS----IVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVI--LSIFLYSLY 323 (345)
T ss_pred cH----HHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHH--HHHHHhhcC
Confidence 53 3455555554 3344556677999999999999998999999999999999999999999999 555566544
Q ss_pred cc
Q 019575 321 LD 322 (339)
Q Consensus 321 ~~ 322 (339)
|.
T Consensus 324 P~ 325 (345)
T KOG2234|consen 324 PA 325 (345)
T ss_pred Cc
Confidence 33
No 2
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.91 E-value=1.6e-22 Score=194.19 Aligned_cols=271 Identities=16% Similarity=0.212 Sum_probs=181.8
Q ss_pred CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 019575 34 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSS-SRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA 112 (339)
Q Consensus 34 gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~ 112 (339)
|=|.|..|++..-+...+.+-+....++.++.-.+ ..++++ .|+..+++=...|.+...|++|+++++.+++.+
T Consensus 39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w-----~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~ 113 (334)
T PF06027_consen 39 GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWW-----KYFLLALLDVEANYLVVLAYQYTSVTSVQLLDC 113 (334)
T ss_pred CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHH-----HHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhh
Confidence 55889999999888877776666554322221111 112222 233345555666788889999999999999999
Q ss_pred hHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 113 SQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQK 192 (339)
Q Consensus 113 s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k 192 (339)
+..+|++++|++++|+|+++.|+.|+.+.++|++++...|.....++.+..+.+.|++++++|++.||++-++.|+..||
T Consensus 114 ~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~ 193 (334)
T PF06027_consen 114 TSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK 193 (334)
T ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999998876653221122223457999999999999999998887776655
Q ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHhhhcceeeeechh
Q 019575 193 VLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSL 272 (339)
Q Consensus 193 ~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl 272 (339)
. + ..|+..++++++.++..+-..+- |++++..- .+......+ ++...+...+.+.-+--+...+++.
T Consensus 194 ~----~---~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~--~w~~~~~~~---~v~~~~~lf~~y~l~p~~l~~ssAt 260 (334)
T PF06027_consen 194 A----P---RVEFLGMLGLFGFIISGIQLAIL-ERSGIESI--HWTSQVIGL---LVGYALCLFLFYSLVPIVLRMSSAT 260 (334)
T ss_pred C----C---HHHHHHHHHHHHHHHHHHHHHhe-ehhhhhcc--CCChhhHHH---HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 2 2 36888999999888777644332 33333210 111111111 1122221111111111112233444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 019575 273 FSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 322 (339)
Q Consensus 273 ~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~ 322 (339)
..++-....-|.+.+.++++||+++++...+|.++++.|+..|...+.++
T Consensus 261 ~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 261 FFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred eeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 43333223336777999999999999999999999999999998876544
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.91 E-value=1.1e-21 Score=187.08 Aligned_cols=280 Identities=18% Similarity=0.242 Sum_probs=206.1
Q ss_pred hhhHHHhhccCCC-chhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019575 24 VILGRYYYDQGGN-SKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYL 102 (339)
Q Consensus 24 ~ll~r~y~~~gg~-~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~yl 102 (339)
-+..|+.-.+.++ .+|.-++.|++.-.+.-.+...... ..+.++...++.+.. +++....+.+-..+++|+
T Consensus 17 ~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 17 ILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK----FPKSRKIPLKKYAIL----SFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----ccCCCcChHHHHHHH----HHHHHHHHHHHHHHHHhC
Confidence 4444555555555 7999999999998887665554322 111222234444444 566677777888999999
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCC-CcchhhhHHHHHHHHHHHHHHHH
Q 019575 103 SASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPS-KVSKWKYILGFISTVGASAIYSL 181 (339)
Q Consensus 103 p~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~-~~~~~~~~~G~~l~l~Aa~~~al 181 (339)
|.++++++++++++++++++++++|||++++++.++++.++|+++...++.++++. +.+..+...|+++.+.+.+..|+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~ 168 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF 168 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987766443322 22122234599999999999999
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHh--ccccchhchhhhccccchhHHHHHHHHHHHHHHHHH
Q 019575 182 LLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFA--SGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCS 259 (339)
Q Consensus 182 y~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~--~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~ 259 (339)
+....|+.++++ ++. ..|+.+|.++++.+........ .+|+.+- ..+..........+....+.-.++.
T Consensus 169 ~~~~qe~~~~~~-~~~----~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~----~~f~~~~p~~~~~l~~~s~~~~~g~ 239 (303)
T PF08449_consen 169 TGVYQEKLFKKY-GKS----PWELMFYTNLFSLPFLLILLFLLPTGEFRSA----IRFISAHPSVLLYLLLFSLTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHh-CCc----HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH----HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999986 333 3899999999999888877766 5554321 1111111111111223333333333
Q ss_pred hhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccc
Q 019575 260 VGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 260 ~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
.++..+....++++.+++.+.|.+++.++++++||+++++.+++|.++++.|...|.+.++
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 4445566778999999999999999999999999999999999999999999999888643
No 4
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.90 E-value=1e-22 Score=186.37 Aligned_cols=297 Identities=15% Similarity=0.165 Sum_probs=229.8
Q ss_pred hHHHHHhhhhhhhhhhHHHhhcc------CCCchhHHHHHHHhhHHHHHHHHhhccCCCC-C---C------CCCCCchh
Q 019575 11 YKSLNSMAGQAAAVILGRYYYDQ------GGNSKWLATLVQTAAFPILYIPLFLLPASQE-V---S------SSSRYPSF 74 (339)
Q Consensus 11 ~~~~~~~~g~~~~~ll~r~y~~~------gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~-~---~------~~~~~~~~ 74 (339)
++.+.|++.+++++++.|...+. |=|++.+|++.++.|+-.|+..+++.+++.+ . + .....|..
T Consensus 6 ~ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~ 85 (372)
T KOG3912|consen 6 FLSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN 85 (372)
T ss_pred hhhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC
Confidence 56678999999999999998774 2389999999999999999888877655432 1 1 11222556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCC
Q 019575 75 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGS 154 (339)
Q Consensus 75 ~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~ 154 (339)
+++++.++++++ ++..++| .|++++.+|.+++++..-.+||.+||.-+++++++.+||+|+....+|.++++..|-.
T Consensus 86 p~lfl~Pal~Di--~gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 86 PVLFLPPALCDI--AGSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred cceecChHHHHH--hhhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence 677888999999 8998888 9999999999999999999999999999999999999999999999999998755421
Q ss_pred CC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH-----HHHhccc-c
Q 019575 155 EG-PSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV-----GLFASGE-W 227 (339)
Q Consensus 155 ~~-~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v-----g~~~~~~-~ 227 (339)
.+ .+..+.++.+.|+++++.|.+.-|.+++++|+..+|. .+.++|...|.++++...+.+ ..+..+| +
T Consensus 163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-----nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sf 237 (372)
T KOG3912|consen 163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-----NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSF 237 (372)
T ss_pred cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-----cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcC
Confidence 11 1111123367899999999999999999999988883 455789999998887544432 2223332 1
Q ss_pred chhchh-hhc----cc--cchhHHHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhH
Q 019575 228 RTLSGE-MQG----FG--KGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGV 300 (339)
Q Consensus 228 ~~l~~~-~~~----f~--~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~ 300 (339)
..-++. .++ |. ++..+..+++..+.++-..++.....++++.|+.++.+...++.-+.|+++...+||.|...
T Consensus 238 S~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll 317 (372)
T KOG3912|consen 238 SCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL 317 (372)
T ss_pred cCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence 111110 011 11 23345555566666666667767788888889989999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 019575 301 KVIAMLMAIWGFASY 315 (339)
Q Consensus 301 k~ig~~l~l~G~~~y 315 (339)
|+.|.++.+.|...|
T Consensus 318 qilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 318 QILGFLILIMGIILY 332 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998887
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.89 E-value=3.6e-20 Score=180.44 Aligned_cols=293 Identities=14% Similarity=0.134 Sum_probs=183.5
Q ss_pred HHhhhhhhh---hhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 019575 15 NSMAGQAAA---VILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGD 91 (339)
Q Consensus 15 ~~~~g~~~~---~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~ 91 (339)
.|+.-|+.. .++.|.-++.|=+...+.++|...+-.++++..+..++ ++...+.+.+.++++.+ .|++-...
T Consensus 17 ~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~~~~~~~~~~~~~~l~l----~g~~g~~~ 91 (358)
T PLN00411 17 AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-SRSLPPLSVSILSKIGL----LGFLGSMY 91 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-hcccCcchHHHHHHHHH----HHHHHHHH
Confidence 445555443 78889999888899999999999998877554443211 11101111122233333 34433345
Q ss_pred HHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHH------hccccchHHHHHHHHHHHHHHHHhccCCCC----------
Q 019575 92 NMLYSVGLLYLSASTYSLICASQLAFNAVFSYFI------NSQKFTALILNSVVILSLSAALIAVNEGSE---------- 155 (339)
Q Consensus 92 ~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~------lkek~t~~~i~slvl~~~G~~ll~~~~~~~---------- 155 (339)
+.+++.|++|+|++.++++.+++|++++++++++ +|||++++++.|++++++|+.++..+++..
T Consensus 92 ~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~ 171 (358)
T PLN00411 92 VITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYL 171 (358)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccc
Confidence 5677899999999999999999999999999999 699999999999999999998875432210
Q ss_pred -----C-CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHH-HHHHhccc-c
Q 019575 156 -----G-PSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICI-VGLFASGE-W 227 (339)
Q Consensus 156 -----~-~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~-vg~~~~~~-~ 227 (339)
+ +...+..+..+|+++.++|+++||+|.++.++..+|+ +. ...+.+|.++++..++. .....+++ .
T Consensus 172 ~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~----~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~ 245 (358)
T PLN00411 172 NFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY----PA--AFTVSFLYTVCVSIVTSMIGLVVEKNNP 245 (358)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----Cc--HhHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 0 0111122346799999999999999999876655552 22 23455555555555554 34433322 1
Q ss_pred chhchhhhccccc-hhHHHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Q 019575 228 RTLSGEMQGFGKG-KVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAML 306 (339)
Q Consensus 228 ~~l~~~~~~f~~g-~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~ 306 (339)
+... ..+... ....+..+ .+.+.|.+.+-++.-+ ++..++....+.+.++.+++++++||++++.+++|++
T Consensus 246 ~~~~---~~~~~~~~~i~y~~i-~t~lay~lw~~~v~~~----ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~ 317 (358)
T PLN00411 246 SVWI---IHFDITLITIVTMAI-ITSVYYVIHSWTVRHK----GPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGI 317 (358)
T ss_pred ccce---eccchHHHHHHHHHH-HHHHHHHHHHHHHhcc----CchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 1110 001100 00111222 2333443333332222 3334555555553345699999999999999999999
Q ss_pred HHHHHHHHHHhcccccchhc
Q 019575 307 MAIWGFASYIYQNYLDDYRS 326 (339)
Q Consensus 307 l~l~G~~~y~y~~~~~~~~~ 326 (339)
+++.|+.....++-+++|++
T Consensus 318 LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 318 LITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHHHHHHHhhhhhhhhhc
Confidence 99999888766554444433
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.88 E-value=4.2e-20 Score=175.69 Aligned_cols=272 Identities=17% Similarity=0.107 Sum_probs=168.7
Q ss_pred hhhHHHhhccCCCchhHHHHHHHh-hHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019575 24 VILGRYYYDQGGNSKWLATLVQTA-AFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYL 102 (339)
Q Consensus 24 ~ll~r~y~~~gg~~~w~~t~~~~~-g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~yl 102 (339)
.++.|.-.+ +-+.|+..+++|.+ +...+.+ ......+++ .+.+++..++++ ..|++.+.++.+.+.|++|+
T Consensus 18 ~~~NK~~l~-~~~~P~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~----~~g~~~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 18 NIYNKKLLN-VFPYPYFKTLISLAVGSLYCLL-SWSSGLPKR--LKISSALLKLLL----PVAIVHTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHh-hCChhHHHHHHHHHHHHHHHHH-HHHhCCCCC--CCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 445554443 33667777777655 4443322 211111111 112222333333 34777778888999999999
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 019575 103 SASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLL 182 (339)
Q Consensus 103 p~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly 182 (339)
+++.++++.+++|+|+++++++++|||++++++.++++.++|+++.. +++ . .....|++++++|++++++|
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~~~------~--~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS-DTE------L--SFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc-CCc------c--cccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998753 211 1 12467999999999999999
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhcc--ccc-hhHHHHHHHHHHHHHHHHH
Q 019575 183 LSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGF--GKG-KVSYVMVIVWTAVSWQVCS 259 (339)
Q Consensus 183 ~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f--~~g-~~~~~~~lv~~~v~~q~~~ 259 (339)
.++.++..++ ++. ...++..|....+.+.+.......++.+..+.+.... ... ...+...+..+...+...+
T Consensus 161 ~v~~k~~~~~--~~~---~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (302)
T TIGR00817 161 NIFSKKAMTI--KSL---DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQ 235 (302)
T ss_pred HHHHHHhhcc--CCC---CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 8886655442 011 2356667776666655554333333222222111111 001 0111111111111111111
Q ss_pred hhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 260 VGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 260 ~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
....-....+++.+.++....++.++.+++++++||++++.+++|.++++.|...|.+
T Consensus 236 ~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 236 QVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111124455777888887777334469999999999999999999999988877654
No 7
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.86 E-value=3.2e-20 Score=171.81 Aligned_cols=220 Identities=19% Similarity=0.263 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCC
Q 019575 76 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSE 155 (339)
Q Consensus 76 ~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~ 155 (339)
|..+.+++.+++++.+|.+.+.+++|+|++++++++|+++++|++++++++|||++++||.|++++++|+++++.++..+
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 44445556778888888888899999999999999999999999999999999999999999999999999987655332
Q ss_pred C--C--C----CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 019575 156 G--P--S----KVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEW 227 (339)
Q Consensus 156 ~--~--~----~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~ 227 (339)
+ + . +.++.+...|+++++.++.+.|+..++.|+..|+ ++ ...+..++|. ++++.++..+..... |+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~--~~-~s~~~~N~qL--~~~gi~~~~~~~~~~-~~ 168 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKR--SN-VSLWIQNMQL--YLFGILFNLLALLLS-DG 168 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcc--cc-hhHHHHHHHH--HHHHHHHHHHHHhcc-cc
Confidence 1 1 1 1123457899999999999999988887777666 22 2344455555 446666666554443 44
Q ss_pred chhchhhhccccchhHHHHHHHHHHHHHHH-HHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Q 019575 228 RTLSGEMQGFGKGKVSYVMVIVWTAVSWQV-CSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAML 306 (339)
Q Consensus 228 ~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~-~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~ 306 (339)
+++.+ ++|.+|... .+|..+..|. .++-+..+.+++|++.+++...+.+.++.++++++|+.+++..-.+|..
T Consensus 169 ~~~~~--~g~f~G~~~----~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 169 SAISE--SGFFHGYSW----WVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred ccccc--CCchhhcch----HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 44432 456666532 2344444444 5566777888999999999999999999999999999999999888876
Q ss_pred H
Q 019575 307 M 307 (339)
Q Consensus 307 l 307 (339)
+
T Consensus 243 ~ 243 (244)
T PF04142_consen 243 L 243 (244)
T ss_pred c
Confidence 5
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.83 E-value=9.6e-18 Score=155.19 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=168.8
Q ss_pred hhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019575 23 AVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYL 102 (339)
Q Consensus 23 ~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~yl 102 (339)
+.+..|...+++.+...+..+|..++..++.+ +...+ + ++...++.. ... ++..+.++.+++.|++|+
T Consensus 4 ~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~-~~~~~---~-----~~~~~~~~~-~~~--~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 4 TGVVIGQYLEGQVPLYFAVFRRLIFALLLLLP-LLRRR---P-----PLKRLLRLL-LLG--ALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHhc---c-----CHhHHHHHH-HHH--HHHHHHHHHHHHHHHHhc
Confidence 46678887777767777777777777776643 33321 1 111222222 222 333478889999999999
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 019575 103 SASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLL 182 (339)
Q Consensus 103 p~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly 182 (339)
|++..+++.+++|+++++++.+++|||++++++.++++.++|+.++..+++ .+.+..|+++.+.|++.|+.+
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--------~~~~~~G~~~~l~a~~~~a~~ 143 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--------LSINPAGLLLGLGSGISFALG 143 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--------ccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753221 112568999999999999998
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHhhh
Q 019575 183 LSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGV 262 (339)
Q Consensus 183 ~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~gv 262 (339)
..+.++..++. +.. ...+..+...++.+.+.......++.... +.+.+ . ...+..++.+.+.+..+..+.
T Consensus 144 ~~~~k~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~--~-~~~~~~~~~~~~~~~~~~~a~ 213 (260)
T TIGR00950 144 TVLYKRLVKKE----GPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQA--LSLQW--G-ALLYLGLIGTALAYFLWNKGL 213 (260)
T ss_pred HHHHhHHhhcC----Cch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc--chHHH--H-HHHHHHHHHHHHHHHHHHHHH
Confidence 88865554442 211 12232234445555444333333321111 11111 0 011223344455555444332
Q ss_pred cceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 019575 263 VGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGF 312 (339)
Q Consensus 263 ~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~ 312 (339)
. +.+....+.+...+++++.+++++++||++++.+++|.++++.|.
T Consensus 214 ~----~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 214 T----LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred h----cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 2 334446777777886677899999999999999999999999774
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.83 E-value=2.7e-17 Score=156.40 Aligned_cols=272 Identities=12% Similarity=0.137 Sum_probs=171.7
Q ss_pred HhhhhhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHH
Q 019575 16 SMAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAIL-AGDNML 94 (339)
Q Consensus 16 ~~~g~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~-~~~~~l 94 (339)
..+.=..+.+..|...++ =+..++.++|...+...+++ +.. + +|. + .+.+.. .|+.. ..+..+
T Consensus 12 ~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~-~~~-~--~~~------~-~~~~~~----~g~~~~~~~~~~ 75 (299)
T PRK11453 12 VVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIF-FVA-R--PKV------P-LNLLLG----YGLTISFGQFAF 75 (299)
T ss_pred HHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH-Hhc-C--CCC------c-hHHHHH----HHHHHHHHHHHH
Confidence 333344566777876653 57789999998876544432 221 1 111 1 122222 23322 344456
Q ss_pred HHHhhcc-CChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHH
Q 019575 95 YSVGLLY-LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTV 173 (339)
Q Consensus 95 ~~~~l~y-lp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l 173 (339)
++.+++| +|++.++++.+++|+++++++++++|||++++++.++++.++|+.++..+ +.+ +. .....|+++++
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~---~~--~~~~~G~~l~l 149 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLN---GQ--HVAMLGFMLTL 149 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCC---Cc--chhHHHHHHHH
Confidence 6689988 79999999999999999999999999999999999999999999887532 111 11 11357999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH-HHHhccccchhchhhhcc--ccchhHHHHHHHH
Q 019575 174 GASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV-GLFASGEWRTLSGEMQGF--GKGKVSYVMVIVW 250 (339)
Q Consensus 174 ~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v-g~~~~~~~~~l~~~~~~f--~~g~~~~~~~lv~ 250 (339)
.|+++|+.|.++.++..++ ++....+.++++.++++..+... ....+++. ....+...+ ..-....++.++.
T Consensus 150 ~aal~~a~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~i~~ 224 (299)
T PRK11453 150 AAAFSWACGNIFNKKIMSH----STRPAVMSLVVWSALIPIIPFFVASLILDGSA-TMIHSLVTIDMTTILSLMYLAFVA 224 (299)
T ss_pred HHHHHHHHHHHHHHHHhcc----cCccchhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhhccCCHHHHHHHHHHHHHH
Confidence 9999999999987665433 22233345566666665554443 22223321 110000011 1111112234566
Q ss_pred HHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 251 TAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 251 ~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
+++.|.+...++..+. .-..+.+...++.+..+++++++||++++.+++|+++++.|.....++
T Consensus 225 t~~~~~l~~~~l~~~~----a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 225 TIVGYGIWGTLLGRYE----TWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 6666666554433332 224556666663355799999999999999999999999888765553
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.82 E-value=2.8e-17 Score=159.87 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=175.8
Q ss_pred HHHHhhhhhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHH
Q 019575 13 SLNSMAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYP-SFVTLALVYLVLGAILAGD 91 (339)
Q Consensus 13 ~~~~~~g~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~G~~~~~~ 91 (339)
++.-........+..|.-.++=.-...+++++...++-++.+. .....+++.+. .+.+ ..++++.. ..++. ..
T Consensus 54 ~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~llp~-gl~~~--~~- 127 (350)
T PTZ00343 54 FLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLY-WATGFRKIPRI-KSLKLFLKNFLPQ-GLCHL--FV- 127 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCC-CCHHHHHHHHHHH-HHHHH--HH-
Confidence 3334444455566666665553224555666666676655332 22111111111 1111 23344444 22333 33
Q ss_pred HHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHH
Q 019575 92 NMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFIS 171 (339)
Q Consensus 92 ~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l 171 (339)
+.....|++++++|.++++.++.|+|+++++++++|||++++++.++++.++|+.+...++ . .....|+++
T Consensus 128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~-------~--~~~~~G~~~ 198 (350)
T PTZ00343 128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE-------L--HFTWLAFWC 198 (350)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc-------c--hhHHHHHHH
Confidence 3444599999999999999999999999999999999999999999999999999875321 1 125789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH-HHHhccc-cch-hc---hhhhccccchhHHH
Q 019575 172 TVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV-GLFASGE-WRT-LS---GEMQGFGKGKVSYV 245 (339)
Q Consensus 172 ~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v-g~~~~~~-~~~-l~---~~~~~f~~g~~~~~ 245 (339)
+++|++.+++|.++.|+..++...+.......++..+..+++.+.++- ....++. +.. .. .+...+......+
T Consensus 199 ~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~- 277 (350)
T PTZ00343 199 AMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF- 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-
Confidence 999999999999998887765311100112344444445555544442 2222321 110 00 0001111111111
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 246 MVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 246 ~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
.++.+.+.+.+.+....-....++.++.++....+..++.+++++++||++++.+++|.++++.|...|-+
T Consensus 278 -~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~ 348 (350)
T PTZ00343 278 -KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSL 348 (350)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhh
Confidence 23344454444443222234456788888888888556679999999999999999999999988877644
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.78 E-value=7e-16 Score=146.22 Aligned_cols=263 Identities=12% Similarity=0.068 Sum_probs=167.5
Q ss_pred hhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 019575 21 AAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAIL-AGDNMLYSVGL 99 (339)
Q Consensus 21 ~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~-~~~~~l~~~~l 99 (339)
..+.+..|...+ +=+..++.++|...+..++++..... +.+. .+++..++. ...|.+. +..+.+++.+.
T Consensus 21 g~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~----~~~~-~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ 90 (292)
T PRK11272 21 GSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR----GHPL-PTLRQWLNA----ALIGLLLLAVGNGMVTVAE 90 (292)
T ss_pred hhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh----CCCC-CcHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456888887766 55778999999999988875544331 1111 111222222 2345443 34556777898
Q ss_pred -ccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 019575 100 -LYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAI 178 (339)
Q Consensus 100 -~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~ 178 (339)
+++|++.++++.+++|+++++++.+ +|||++++++.+++++++|+.++..+++. +....|+++.++|+++
T Consensus 91 ~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~--------~~~~~G~l~~l~a~~~ 161 (292)
T PRK11272 91 HQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL--------SGNPWGAILILIASAS 161 (292)
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc--------ccchHHHHHHHHHHHH
Confidence 9999999999999999999999986 69999999999999999999887433110 1145799999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHH
Q 019575 179 YSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVC 258 (339)
Q Consensus 179 ~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~ 258 (339)
||.|....+ |..++++ .....+...++...+.......++......+.+.+ ....++.++.+++.+..+
T Consensus 162 ~a~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~l~i~~s~~~~~l~ 230 (292)
T PRK11272 162 WAFGSVWSS----RLPLPVG----MMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGF---LALGYLAVFGSIIAISAY 230 (292)
T ss_pred HHHHHHHHH----hcCCCcc----hHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHH---HHHHHHHHHHHHHHHHHH
Confidence 999887744 3322221 22333333334333332222222211110111111 011223345555555554
Q ss_pred HhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 259 SVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 259 ~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
..+.. +.++-..+.....+++...+++++++||++++.+++|+++++.|......
T Consensus 231 ~~~~~----~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 231 MYLLR----NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHh----hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 43322 22444567777777556679999999999999999999999977766533
No 12
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.75 E-value=1.6e-15 Score=144.13 Aligned_cols=267 Identities=9% Similarity=0.035 Sum_probs=161.2
Q ss_pred hhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 019575 21 AAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLL 100 (339)
Q Consensus 21 ~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ 100 (339)
..+.+..|... +=+...+.++|...|.+++++.....+.+++...+. + .++........++..+.++.+|++|++
T Consensus 21 g~~~~~~k~~~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~a~~ 95 (296)
T PRK15430 21 GIAPAYFKLIY--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLI-Q--TPQKIFMLAVSAVLIGGNWLLFIWAVN 95 (296)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH-c--CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566668642 345678999999999987765444321100000000 0 112212222234555888899999999
Q ss_pred cCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 019575 101 YLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYS 180 (339)
Q Consensus 101 ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~a 180 (339)
++|++.++++..+.|+++++++++++|||++++++.++++.++|++++..+ +++ . ..+.++|+++||
T Consensus 96 ~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~---------~---~~~~l~aa~~~a 162 (296)
T PRK15430 96 NHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGS---------L---PIIALGLAFSFA 162 (296)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCC---------c---cHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987522 110 1 135777899999
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHh
Q 019575 181 LLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSV 260 (339)
Q Consensus 181 ly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~ 260 (339)
+|.+..++. +++..........|...++.+. .... .......... .... .....+...+.+.+.+-++..
T Consensus 163 ~~~i~~r~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~-~~~~~~~~g~~t~i~~~~~~~ 232 (296)
T PRK15430 163 FYGLVRKKI-----AVEAQTGMLIETMWLLPVAAIY-LFAI-ADSSTSHMGQ--NPMS-LNLLLIAAGIVTTVPLLCFTA 232 (296)
T ss_pred HHHHHHHhc-----CCCCchhHHHHHHHHHHHHHHH-HHHH-ccCCcccccC--CcHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 988774332 1111111222233333222222 1111 1111110100 0000 000111111233343433332
Q ss_pred hhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 019575 261 GVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 261 gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~ 319 (339)
+ +. ..++-..+.....++++..+++++++||++++.+.+|+++++.|+.....+.
T Consensus 233 a---~~-~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 233 A---AT-RLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred H---Hh-cCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22 2244456777777755667999999999999999999999999999987764
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.71 E-value=2.8e-14 Score=135.36 Aligned_cols=257 Identities=14% Similarity=0.089 Sum_probs=161.2
Q ss_pred hhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019575 22 AAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLY 101 (339)
Q Consensus 22 ~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~y 101 (339)
.+-...|+-+++ =+...+.++|...+.+++++.... ++. +.+++..++... .|+..+..+.+++++++|
T Consensus 26 ~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~----~~~--~~~~~~~~~~~~----~g~~~~~~~~~~~~al~~ 94 (293)
T PRK10532 26 SGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP----WRL--RFAKEQRLPLLF----YGVSLGGMNYLFYLSIQT 94 (293)
T ss_pred hhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH----Hhc--cCCHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 334468887775 355779999999998887543211 111 111122223332 456667778888899999
Q ss_pred CChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 019575 102 LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSL 181 (339)
Q Consensus 102 lp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~al 181 (339)
+|++.++++..++|+++++++ +||.++. .++.+.++|+.++. .++.+. +.....|+++.++|+++|+.
T Consensus 95 ~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~-~~~~~~-----~~~~~~G~ll~l~aa~~~a~ 162 (293)
T PRK10532 95 VPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLL-PLGQDV-----SHVDLTGAALALGAGACWAI 162 (293)
T ss_pred ccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheee-ecCCCc-----ccCChHHHHHHHHHHHHHHH
Confidence 999999999999999999987 3665544 45667789988764 221111 11246799999999999999
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHhh
Q 019575 182 LLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVG 261 (339)
Q Consensus 182 y~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~g 261 (339)
|....++..++ ++.. .+ .+..+++..++.......++ ....+.+.+ ....++.++.+.+.|-++..+
T Consensus 163 ~~v~~r~~~~~----~~~~---~~-~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~---~~~l~lgv~~t~~~~~l~~~~ 229 (293)
T PRK10532 163 YILSGQRAGAE----HGPA---TV-AIGSLIAALIFVPIGALQAG--EALWHWSIL---PLGLAVAILSTALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHhcc----CCch---HH-HHHHHHHHHHHHHHHHHccC--cccCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 98887655433 2221 12 23334444443322222221 111111111 012244566666666655544
Q ss_pred hcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 262 VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 262 v~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
+.-. ++-.++.....+++.+.+++++++||++++.+++|+++++.|...+...
T Consensus 230 ~~~~----~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 230 LTRL----PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHhc----ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 3222 4445777777775566799999999999999999999999888887554
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.70 E-value=1.9e-14 Score=136.62 Aligned_cols=264 Identities=9% Similarity=0.019 Sum_probs=157.9
Q ss_pred hhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 019575 22 AAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLL- 100 (339)
Q Consensus 22 ~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~- 100 (339)
.+-+..|.--+ +=+..++.++|...+..++++ +.. . ++. ++..++.... .++..+..+.+++.|+.
T Consensus 18 ~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~-~~~-~--~~~-----~~~~~~~~~~---~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 18 TMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLL-TVG-F--PRL-----RQFPKRYLLA---GGLLFVSYEICLALSLGY 84 (295)
T ss_pred HHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHH-Hcc-c--ccc-----ccccHHHHHH---HhHHHHHHHHHHHHHHHH
Confidence 34566775433 346788899999888877753 221 1 110 1112233333 23334566666666664
Q ss_pred ---cCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCC--cchhhhHHHHHHHHHH
Q 019575 101 ---YLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSK--VSKWKYILGFISTVGA 175 (339)
Q Consensus 101 ---ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~--~~~~~~~~G~~l~l~A 175 (339)
.+|++..+++.+++|+++++++.+++|||++++++.++++.++|++++..++.+.+..+ .+..+...|+++.++|
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999988753321111000 0111245799999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHH
Q 019575 176 SAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSW 255 (339)
Q Consensus 176 a~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~ 255 (339)
+++||+|.++.++..++ .+. ..+... .+...+......+++.. .+.+.+.+ .. ..+.. +.+.+.|
T Consensus 165 a~~~A~~~v~~k~~~~~----~~~---~~~~~~---~~~~~l~~~~~~~~~~~-~~~~~~~~--~~-l~~~~-~~t~~~~ 229 (295)
T PRK11689 165 AFIWAAYCNVTRKYARG----KNG---ITLFFI---LTALALWIKYFLSPQPA-MVFSLPAI--IK-LLLAA-AAMGFGY 229 (295)
T ss_pred HHHHHHHHHHHhhccCC----CCc---hhHHHH---HHHHHHHHHHHHhcCcc-ccCCHHHH--HH-HHHHH-HHHHHHH
Confidence 99999999986554322 221 222111 11222222222232211 11111111 00 01111 2333334
Q ss_pred HHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 256 QVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 256 q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
-+...+ +... ++...+.....++++..+++++++||++++.+++|+++++.|......
T Consensus 230 ~l~~~a---l~~~-~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 230 AAWNVG---ILHG-NMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHH---HHcc-CHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 333333 2222 444566667777445679999999999999999999999988766643
No 15
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.3e-16 Score=146.22 Aligned_cols=218 Identities=15% Similarity=0.239 Sum_probs=168.8
Q ss_pred HHHHHhhcc-CChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCC-C---------CCcc
Q 019575 93 MLYSVGLLY-LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEG-P---------SKVS 161 (339)
Q Consensus 93 ~l~~~~l~y-lp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~-~---------~~~~ 161 (339)
..-.+++++ +|...+-++++..++.||..+++++|+|++.+|+.++++.++|+++-.+.++.|- . +..+
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~ 158 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSD 158 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCccccc
Confidence 444466666 7777899999999999999999999999999999999999999987544333221 1 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH-HHHhccccchhchhhhc----
Q 019575 162 KWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV-GLFASGEWRTLSGEMQG---- 236 (339)
Q Consensus 162 ~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v-g~~~~~~~~~l~~~~~~---- 236 (339)
...-.+|+.+...|.++.|...+..|..|||++|+. -|..+|.++.+.+.++. +.=+-.+|... ...+.
T Consensus 159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~-----~EalFytH~LsLP~Flf~~~div~~~~~~-~~se~~~~p 232 (330)
T KOG1583|consen 159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHW-----KEALFYTHFLSLPLFLFMGDDIVSHWRLA-FKSESYLIP 232 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHhccchHHHhcchHHHHHHHH-hcCcceecc
Confidence 233478999999999999999999999999987665 59999999988877763 21111122211 11111
Q ss_pred -cccchhHHHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 237 -FGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 237 -f~~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
+..-.++-+.-+..+.+++-.|.-|+--+...++|++.+++.++|.-++.+++++.|.+++++...+|..+++.|...|
T Consensus 233 ~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 233 LLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLF 312 (330)
T ss_pred ccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1111123333467888888899999999999999999999999999999999999999999999999999999988888
Q ss_pred H
Q 019575 316 I 316 (339)
Q Consensus 316 ~ 316 (339)
.
T Consensus 313 a 313 (330)
T KOG1583|consen 313 A 313 (330)
T ss_pred H
Confidence 3
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.65 E-value=8.1e-14 Score=131.34 Aligned_cols=212 Identities=7% Similarity=-0.004 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchh
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 163 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~ 163 (339)
.|+.....+.+++.|+++.|++..+.+..++|+++++++++++|||++++++.|+++.+.|+.++..++. + +
T Consensus 69 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~--~--~---- 140 (281)
T TIGR03340 69 SAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF--A--Q---- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc--c--c----
Confidence 4555577778888999999999999999999999999999999999999999999999999998753321 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhH
Q 019575 164 KYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVS 243 (339)
Q Consensus 164 ~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~ 243 (339)
....|+.+.+.+++.|+.|.++.++..++. .+.........+.......++.......++. ....+ ...... .
T Consensus 141 ~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~-~ 213 (281)
T TIGR03340 141 HRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPY--ARQILP-S 213 (281)
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhh--HHHHHH-H
Confidence 123577889999999999988754432221 1111111122222222112222111111211 11000 000000 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 019575 244 YVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 314 (339)
Q Consensus 244 ~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~ 314 (339)
.+...+.+.+.+.+...+....... ..+......+++..+++++++||+++..+.+|+++++.|...
T Consensus 214 ~~~~~~~s~l~~~l~~~al~~~~a~----~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 214 ATLGGLMIGGAYALVLWAMTRLPVA----TVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCce----EEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 1223455555555544333222221 122222244345579999999999999999999999988753
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.58 E-value=8e-13 Score=122.70 Aligned_cols=154 Identities=10% Similarity=0.010 Sum_probs=109.7
Q ss_pred hhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019575 20 QAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGL 99 (339)
Q Consensus 20 ~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l 99 (339)
-..+.+..|.. .+=+..++.++|...|.+++++.....+.+++..++..++..+++.......|+..+.++.+|++|+
T Consensus 14 wg~~~~~~k~~--~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 91 (256)
T TIGR00688 14 FGYMYYYSKLL--KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAV 91 (256)
T ss_pred HHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788873 3457788999999999888755443322111000010111111222222345777788999999999
Q ss_pred ccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 019575 100 LYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIY 179 (339)
Q Consensus 100 ~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~ 179 (339)
+|+|+++++++.++.|+|+++++.+++|||++++++.++++.++|++++..+ +++ . . .+.++++++|
T Consensus 92 ~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~-------~-~----~~~l~aa~~~ 158 (256)
T TIGR00688 92 NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGS-------L-P----WEALVLAFSF 158 (256)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCC-------c-h----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887432 111 1 1 3567899999
Q ss_pred HHHHHHHHH
Q 019575 180 SLLLSLMQL 188 (339)
Q Consensus 180 aly~~l~e~ 188 (339)
+.|.+..++
T Consensus 159 a~~~i~~~~ 167 (256)
T TIGR00688 159 TAYGLIRKA 167 (256)
T ss_pred HHHHHHHhh
Confidence 999888544
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.55 E-value=2.3e-11 Score=112.97 Aligned_cols=209 Identities=14% Similarity=0.198 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchh
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSY-FINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 163 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~-~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~ 163 (339)
++..+..+.+|+.+++|+|++.++++.++.|+++++++. +++|||++++++.++++.++|+.++...+..+ . ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~----~-~~ 151 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG----G-IL 151 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc----h-hH
Confidence 444478889999999999999999999999999999996 77799999999999999999999985432211 0 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHH-HHHHHHHHHHHHHHHhccccchhchhhhccccchh
Q 019575 164 KYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQI-YTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKV 242 (339)
Q Consensus 164 ~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~-~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~ 242 (339)
+..|+.+.+.+++.++++.+..++.. + .+. ..... +... ............ +.+ .+.+...+ ..
T Consensus 152 -~~~g~~~~l~a~~~~a~~~~~~~~~~-~----~~~---~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~---~~ 216 (292)
T COG0697 152 -SLLGLLLALAAALLWALYTALVKRLS-R----LGP---VTLALLLQLL-LALLLLLLFFLS-GFG-APILSRAW---LL 216 (292)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhc-C----CCh---HHHHHHHHHH-HHHHHHHHHHhc-ccc-ccCCHHHH---HH
Confidence 57899999999999999888755444 2 111 11221 1111 111111111111 111 11110011 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 243 SYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAIT-PVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 243 ~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~-~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
.-+..++.+.+.+.....+..-. +....+.+...+ |+. .+.+++++||+++..+.+|..+++.|.....++
T Consensus 217 ~~~~g~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~-~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 217 LLYLGVFSTGLAYLLWYYALRLL----GASLVALLSLLE-PVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CchHHHHHHHHH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 11111223323333322221111 221233333444 555 466999999999999999999999888877664
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.54 E-value=2.2e-13 Score=129.82 Aligned_cols=294 Identities=14% Similarity=0.183 Sum_probs=190.9
Q ss_pred HHhhhhhhhhhhHHHhhccCC-CchhHHHHHHHhhHHHHHHHHhh----ccC--CC--C------C--------------
Q 019575 15 NSMAGQAAAVILGRYYYDQGG-NSKWLATLVQTAAFPILYIPLFL----LPA--SQ--E------V-------------- 65 (339)
Q Consensus 15 ~~~~g~~~~~ll~r~y~~~gg-~~~w~~t~~~~~g~p~l~~~~~~----~~~--~~--~------~-------------- 65 (339)
.+.+-=..+.-+.|.-|+.+. ++|+..|+..+.-|-+-++++.+ ++. +| + .
T Consensus 21 ~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~e~y~~~~~~~ 100 (416)
T KOG2765|consen 21 LVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADAEGYFSACTTD 100 (416)
T ss_pred HHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhhhccccccccc
Confidence 344445667888899898876 68999999999999887776541 000 01 0 0
Q ss_pred ---------------------C---CC---------CCCc-hhH------------HHHHHHHHHHHHHHHHHHHHHHhh
Q 019575 66 ---------------------S---SS---------SRYP-SFV------------TLALVYLVLGAILAGDNMLYSVGL 99 (339)
Q Consensus 66 ---------------------~---~~---------~~~~-~~~------------~l~~~~~~~G~~~~~~~~l~~~~l 99 (339)
+ ++ ...+ ..| +..-++..+..+-...|+.|+.|+
T Consensus 101 ~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lWF~anl~~naAL 180 (416)
T KOG2765|consen 101 KTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLWFLANLTSNAAL 180 (416)
T ss_pred cccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 0000 011 334444445566667779999999
Q ss_pred ccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHH
Q 019575 100 LYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIY 179 (339)
Q Consensus 100 ~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~ 179 (339)
.|+.++..+++.++.=.||..++.++..||+|+.|.+++.+.+.|++++..+++.+. ++....+..+|.++++.+|+.|
T Consensus 181 a~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~-~~~~a~~~llG~llaL~sA~~Y 259 (416)
T KOG2765|consen 181 AFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN-SDLPASRPLLGNLLALLSALLY 259 (416)
T ss_pred hhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc-ccCCccchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999866544322 1222355799999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH---HHHh---ccc-cchhchhhhccccchhHHHHHHHHHH
Q 019575 180 SLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV---GLFA---SGE-WRTLSGEMQGFGKGKVSYVMVIVWTA 252 (339)
Q Consensus 180 aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v---g~~~---~~~-~~~l~~~~~~f~~g~~~~~~~lv~~~ 252 (339)
|.|.++- ||-..++. .-+.++.+.+.++..-+++ .+++ .++ --++|.. .+.+. -....++.+.
T Consensus 260 avY~vll----k~~~~~eg--~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~---~q~~~-vv~~~ligtv 329 (416)
T KOG2765|consen 260 AVYTVLL----KRKIGDEG--ERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSS---TQFSL-VVFNNLIGTV 329 (416)
T ss_pred HHHHHHH----Hhhccccc--ccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCC---ceeEe-eeHhhHHHHH
Confidence 9999984 43222221 0134444444443322221 1111 111 0123321 11111 1111244555
Q ss_pred HHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccccc
Q 019575 253 VSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDD 323 (339)
Q Consensus 253 v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~~ 323 (339)
++=.+...+ ...++++...+-+++-+|+..+.-+++=|.++++..++|.+.++.|+....|....++
T Consensus 330 vSDylW~~a----~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 330 VSDYLWAKA----VLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred HHHHHHHHH----HHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 422221111 1134777777778888899999999999999999999999999999988877654443
No 20
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.49 E-value=2.1e-11 Score=115.78 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=162.4
Q ss_pred hhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019575 24 VILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS 103 (339)
Q Consensus 24 ~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp 103 (339)
.+..|.++ |-...|+. +...|.-++.......+.++ ...++.+..++..|+..+..|..|+.+.+|+.
T Consensus 17 g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--------~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~g 84 (290)
T TIGR00776 17 VLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--------FWALSIFLVGLLSGAFWALGQINQFKSMRYMG 84 (290)
T ss_pred HHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--------ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 44556555 43445553 55666665544444432111 11246677778889999999999999999999
Q ss_pred hhHHHHHHH-hHHHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHH
Q 019575 104 ASTYSLICA-SQLAFNAVFSYFINSQKFTALI----LNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAI 178 (339)
Q Consensus 104 ~st~sll~~-s~~~ftalfs~~~lkek~t~~~----i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~ 178 (339)
++++..+.+ .+++++++++.+++|||.++++ +.|+++.++|+.++...++++. ++.++.+...|+++.+.|+++
T Consensus 85 va~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-~~~~~~~~~~Gi~~~l~sg~~ 163 (290)
T TIGR00776 85 VSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSA-GIKSEFNFKKGILLLLMSTIG 163 (290)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccc-ccccccchhhHHHHHHHHHHH
Confidence 999999999 9999999999999999999999 9999999999988754432211 111002235699999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHH
Q 019575 179 YSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVC 258 (339)
Q Consensus 179 ~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~ 258 (339)
|+.|....|.. +.++.. ..=.|.+.-+++..+..... . +.++...+ +.+ ......++| .+.+..+
T Consensus 164 y~~~~~~~~~~-----~~~~~~-~~~~~~~g~~~~~~~~~~~~-~--~~~~~~~~-~~~----~~~~~Gi~~-~ia~~~y 228 (290)
T TIGR00776 164 YLVYVVVAKAF-----GVDGLS-VLLPQAIGMVIGGIIFNLGH-I--LAKPLKKY-AIL----LNILPGLMW-GIGNFFY 228 (290)
T ss_pred HHHHHHHHHHc-----CCCcce-ehhHHHHHHHHHHHHHHHHH-h--cccchHHH-HHH----HHHHHHHHH-HHHHHHH
Confidence 99999997643 112211 11113332222222222111 0 00111110 000 011111222 3333333
Q ss_pred HhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHH----HHHHHHHHHHHHH
Q 019575 259 SVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKV----IAMLMAIWGFASY 315 (339)
Q Consensus 259 ~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~----ig~~l~l~G~~~y 315 (339)
..+... +..+..++++++.++.++.+.+++++||+.+..+. +|+++++.|...-
T Consensus 229 ~~~~~~---~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~ 286 (290)
T TIGR00776 229 LFSAQP---KVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANIL 286 (290)
T ss_pred HHHccc---ccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHH
Confidence 334332 33444677888888334569999999999999999 9999999887654
No 21
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.46 E-value=9.7e-12 Score=115.93 Aligned_cols=219 Identities=18% Similarity=0.226 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchh
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 163 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~ 163 (339)
+|+..+.|--+-++|+.|+|.|.|++..++.++|..+|+.++--||+++.-...+.+...|+.+....+. +
T Consensus 90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-----q---- 160 (349)
T KOG1443|consen 90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-----Q---- 160 (349)
T ss_pred hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-----c----
Confidence 4777788888889999999999999999999999999999999999999888888888888877655432 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhh-ccccc
Q 019575 164 KYILGFISTVGASAIYSLLLSLMQLSFQKV--LKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQ-GFGKG 240 (339)
Q Consensus 164 ~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~--~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~-~f~~g 240 (339)
-.+.|+.++.+|++..|+-+...|...||- .++++..+...+|-++++ ..+..++..+|.......+.. .+..+
T Consensus 161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~~s~~f~~~d~~ 237 (349)
T KOG1443|consen 161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLITSSSIFRFQDTG 237 (349)
T ss_pred eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccchhhhHHHhcCcc
Confidence 257899999999999999999999999984 346667777778887754 333456666775433222211 22222
Q ss_pred hhHHHHHHH--HHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 241 KVSYVMVIV--WTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 241 ~~~~~~~lv--~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
..-.++... +....+.. ...-.-+...+++++.++.--.+-..+.++|++..+|+++.....|+.++..|...|
T Consensus 238 ~~~rv~g~i~l~g~laF~l-~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 238 LILRVIGLISLGGLLAFLL-EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 111111101 11111111 112223444577888888877776777899999999999999999999999999988
No 22
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.41 E-value=1.3e-10 Score=108.23 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=163.0
Q ss_pred CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 019575 34 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICAS 113 (339)
Q Consensus 34 gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s 113 (339)
..+..=+-+.|..-.+|+.+..+...+.++. .+. -...+|.+....+.+++++.|-.+|.++.+.=.+--+|+=+..
T Consensus 31 ~~~~~eIlahRviwS~~~~l~ll~~~r~~~~--~~~-~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~I 107 (293)
T COG2962 31 PLPATEILAHRVIWSFPFMLALLFLLRQWRE--LKQ-LLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFI 107 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHH-HHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHH
Confidence 4455567788888899998877776532221 111 1122345556677899999999999999999888888999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019575 114 QLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKV 193 (339)
Q Consensus 114 ~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~ 193 (339)
+|+++.+++.+++|||+++.|+++++++.+|+....+..++- ... ++.=+.+|++|..+ ||.
T Consensus 108 nPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~l---------pwv----al~la~sf~~Ygl~-----RK~ 169 (293)
T COG2962 108 NPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSL---------PWV----ALALALSFGLYGLL-----RKK 169 (293)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCC---------cHH----HHHHHHHHHHHHHH-----HHh
Confidence 999999999999999999999999999999999876654321 222 34446688888877 443
Q ss_pred hcccc-chhhHHHHHHHHHHHHHHHHHHHHhccccch-hchhhhccccchhHHHHHHHHHHHHHHHHHhhhcceeeeech
Q 019575 194 LKRQS-FGVVLDMQIYTSFVATCICIVGLFASGEWRT-LSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSS 271 (339)
Q Consensus 194 ~~~~~-~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~-l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ss 271 (339)
.+.+. ....+|+... .++.++.....+|-.+ ...+.+.. ..-..+.=..+++...++..+..-+...
T Consensus 170 ~~v~a~~g~~lE~l~l-----~p~al~yl~~l~~~~~~~~~~~~~~---~~LLv~aG~vTavpL~lf~~aa~~lpls--- 238 (293)
T COG2962 170 LKVDALTGLTLETLLL-----LPVALIYLLFLADSGQFLQQNANSL---WLLLVLAGLVTAVPLLLFAAAAKRLPLS--- 238 (293)
T ss_pred cCCchHHhHHHHHHHH-----hHHHHHHHHHHhcCchhhhcCCchH---HHHHHHhhHHHHHHHHHHHHHHhcCCHH---
Confidence 34332 2234554433 3444443333333221 11000000 0011111223333333333332222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 019575 272 LFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 322 (339)
Q Consensus 272 l~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~ 322 (339)
+-++..-.++.+.-+++++++||+++..|.++.+++-.|...|......+
T Consensus 239 -~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 239 -TLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556634567999999999999999999999999999998865433
No 23
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.35 E-value=2.9e-12 Score=122.17 Aligned_cols=272 Identities=18% Similarity=0.198 Sum_probs=176.6
Q ss_pred hhHHHhhcc-CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 019575 25 ILGRYYYDQ-GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLS 103 (339)
Q Consensus 25 ll~r~y~~~-gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp 103 (339)
+..|.-.++ |.+-||.-|..+++.=-+........+..++.+ .+++..+++++.+ |+..+....+=..|+.|+|
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~-~~~~~~~~~llpl----~~~~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK-ISSKLPLRTLLPL----GLVFCISHVLGNVSLSYVP 108 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccccchHHHHHH----HHHHHHHHHhcchhhhccc
Confidence 333433443 778888888887666555544444333222211 1122345555544 6666777778889999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 019575 104 ASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLL 183 (339)
Q Consensus 104 ~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~ 183 (339)
+|.++++.++.|+|+.++++++.+|++++..+.+++....|+++-..++. +-+..|+..++.+-+.++++.
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~---------~fn~~G~i~a~~s~~~~al~~ 179 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL---------SFNLFGFISAMISNLAFALRN 179 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc---------cccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877543211 226899999999999999998
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH--HHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHhh
Q 019575 184 SLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVG--LFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVG 261 (339)
Q Consensus 184 ~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg--~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~g 261 (339)
++.+...++ |++ ..+.++..-|++-.+...+++- ...+++- ....+...++.. +.. ++.+.+...++++.
T Consensus 180 I~~~~ll~~--~~~-~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~-~~~~~~~~~~~~---~~~-~~~~sv~~f~~Nls 251 (316)
T KOG1441|consen 180 ILSKKLLTS--KGE-SLNSMNLLYYTAPISLIFLLIPFLDYVEGNK-FVGFLTAPWFVT---FLI-LLLNSVLAFLLNLS 251 (316)
T ss_pred HHHHHhhhc--ccc-ccCchHHHHHhhhHHHHHHhcchHhhhcccc-eeeeeccccchh---hHH-HHHHHHHHHHHHHH
Confidence 888777753 222 2345777777766555544431 1112211 000001112111 111 11222322233334
Q ss_pred hcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 262 VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 262 v~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
..-+...+|+++=++....+-.++.+.++++|+|+.|+.++.|+++++.|...|-+.
T Consensus 252 ~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 252 AFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred HHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 344444567777666666665666788889999999999999999999877776554
No 24
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.34 E-value=3e-11 Score=103.00 Aligned_cols=150 Identities=20% Similarity=0.254 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccc--cc-hhHH
Q 019575 168 GFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFG--KG-KVSY 244 (339)
Q Consensus 168 G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~--~g-~~~~ 244 (339)
|+++++.|.++.|++.++.|+.+++..++......++++.|.+..+.+.+....+..++++..+...+... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78999999999999999999998884222335567999999999999888877666655442222111111 11 2234
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 245 VMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 245 ~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
+..++.+.+.+.+.+.....+...+|+++.+++...+.+++.++++++|||++|+.+++|.++++.|...|.|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 4456777777888888888999999999999999999999999999999999999999999999999998865
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.32 E-value=9.6e-11 Score=105.77 Aligned_cols=219 Identities=15% Similarity=0.124 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchh
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKW 163 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~ 163 (339)
|.+-+.+...--..+++|.|-.|..+=.+++|+=+|++.+++.|++++|++..++.+..+|+++....+.. ..+.++.
T Consensus 91 cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K--v~g~e~~ 168 (337)
T KOG1580|consen 91 CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK--VGGAEDK 168 (337)
T ss_pred HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc--cCCCccc
Confidence 33433444445558999999999999999999999999999999999999999999999999998654321 1122233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhH
Q 019575 164 KYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVS 243 (339)
Q Consensus 164 ~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~ 243 (339)
....|-++.+.+-..=|+-..+.++..+.+ ++. --+|.+++.++++..+..|++.+||..+.-.-.++. ...-
T Consensus 169 t~g~GElLL~lSL~mDGlTg~~Qdrira~y-q~~----g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh--P~~~ 241 (337)
T KOG1580|consen 169 TFGFGELLLILSLAMDGLTGSIQDRIRASY-QRT----GTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH--PYVF 241 (337)
T ss_pred ccchHHHHHHHHHHhcccchhHHHHHHHhh-ccC----chhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc--cHHH
Confidence 467899999999888888777766665554 332 246888888899999999999888732221100111 1101
Q ss_pred HHHHH--HHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 244 YVMVI--VWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 244 ~~~~l--v~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
|-+++ +..++.+......+. +-+.++-+++.+-+.-.+.+.++++|++++++.|+.|.++++.+...=
T Consensus 242 ~~l~l~ai~s~LGQ~fIF~tv~----~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 242 WDLTLLAIASCLGQWFIFKTVE----EFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----HhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 11111 111121111222222 224456677778888899999999999999999999999998766554
No 26
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.22 E-value=3.6e-09 Score=98.94 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhh
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWK 164 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~ 164 (339)
++.......+-+.|++|++-.|..+-.+++.+=+++...++.|+|++.++.....+...|+.+....+.+|++.+..+.+
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 56556666777799999999999999999999999999999999999999999999999998876655444333332346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccc-hhchhhhccccchhH
Q 019575 165 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWR-TLSGEMQGFGKGKVS 243 (339)
Q Consensus 165 ~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~-~l~~~~~~f~~g~~~ 243 (339)
.+.|+.+....-+.=|+-..-.+..+++ +-....+|.+++.++.++....+++..|.+. .+..-. .+-+
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~-----~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~---~hp~-- 239 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKK-----YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK---EHPD-- 239 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhcc-----CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH---cChh--
Confidence 7999999998877777733334444443 2344578999999999999998877766543 111000 0111
Q ss_pred HHHHHHHHHHHHHHHHhhhcceeee------echhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 244 YVMVIVWTAVSWQVCSVGVVGLIYV------VSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 244 ~~~~lv~~~v~~q~~~~gv~gl~~~------~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
..+-.+.+..|+ .+|..+. -.++.-..+.+.|+.++.+++.+.||.+.++.|..|..+++.|...=+|
T Consensus 240 ----~~~Di~l~s~~g--avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 240 ----VAFDILLYSTCG--AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred ----HHHHHHHHHHhh--hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 122223333322 2222221 2466677889999999999999999999999999999999866655455
Q ss_pred cc
Q 019575 318 QN 319 (339)
Q Consensus 318 ~~ 319 (339)
.+
T Consensus 314 ~k 315 (327)
T KOG1581|consen 314 LK 315 (327)
T ss_pred HH
Confidence 43
No 27
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.15 E-value=8.4e-10 Score=100.50 Aligned_cols=214 Identities=13% Similarity=0.098 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhH
Q 019575 87 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYI 166 (339)
Q Consensus 87 ~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~ 166 (339)
++.-+|.+...++.+.++...... +.+.+.++++...+++++++..||.++.++..|+.....++..++ ....++..
T Consensus 8 ~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g~~~ 84 (222)
T TIGR00803 8 IIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFGNPV 84 (222)
T ss_pred HHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--ccccccHH
Confidence 344555455577777777778877 888888888888888888888888888888877766543332211 11224467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHH
Q 019575 167 LGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVM 246 (339)
Q Consensus 167 ~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~ 246 (339)
.|..+.+.+....++-.++.|+.+|+ +. ....+..+...++..+....+.... +....+. +++.++......
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~----~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~ 156 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKD----GD-TMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISN--FGFFIGYPTAVW 156 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccC----CC-CchHHHHHHHHHHHHHHHHHHHhhc-ccchhhc--cCcccCCchHHH
Confidence 88888888888888855554444222 11 1111111212222222212222222 2222211 233333222211
Q ss_pred HHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 019575 247 VIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 314 (339)
Q Consensus 247 ~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~ 314 (339)
.++.+ -.+....+..+.++.++++++++.+.++.++.++++++|||+++..+.+|..+++.|...
T Consensus 157 ~~~~~---~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLL---NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHH---HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 11111 111223466777789999999999999888899999999999999999999999966543
No 28
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.6e-09 Score=98.00 Aligned_cols=275 Identities=13% Similarity=0.159 Sum_probs=168.8
Q ss_pred hhhhhhhhHHHhhccCC-CchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 19 GQAAAVILGRYYYDQGG-NSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSV 97 (339)
Q Consensus 19 g~~~~~ll~r~y~~~gg-~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~ 97 (339)
..+..++..|+--.+=+ |.-...-+.|...-.+.+..+...+.- +-+..+....||++-+ -+++.++-..=..
T Consensus 23 sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv--~~~~l~~~~~kk~~P~----~~lf~~~i~t~~~ 96 (314)
T KOG1444|consen 23 SSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV--NFRPLDLRTAKKWFPV----SLLFVGMLFTGSK 96 (314)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee--ecCCcChHHHHHHccH----HHHHHHHHHHccc
Confidence 34445666666444322 333333334544444433322221110 1111223334444444 3333444444447
Q ss_pred hhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHH
Q 019575 98 GLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASA 177 (339)
Q Consensus 98 ~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~ 177 (339)
+++|+|++++++++...++++++....++|+|.++..+.+++++.+|....+..+.+. ...|-..++...+
T Consensus 97 slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf---------~~~gY~w~~~n~~ 167 (314)
T KOG1444|consen 97 SLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF---------NLRGYSWALANCL 167 (314)
T ss_pred cccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee---------cchhHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999988765444322 2348888888888
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHH-----
Q 019575 178 IYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTA----- 252 (339)
Q Consensus 178 ~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~----- 252 (339)
+-+.+.+..++..+.- ...-.++.+|-.+.+.++..+-.+..|||+++..+...+... ..++.+....
T Consensus 168 ~~a~~~v~~kk~vd~~-----~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~--~~~~~~~lScv~gf~ 240 (314)
T KOG1444|consen 168 TTAAFVVYVKKSVDSA-----NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDS--SVLVVMLLSCVMGFG 240 (314)
T ss_pred HHHHHHHHHHHhhccc-----cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccch--hHHHHHHHHHHHHHH
Confidence 8888888765444432 112356788889998888888888889887443322112111 1112112222
Q ss_pred HHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccc
Q 019575 253 VSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 253 v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
++|.- .--+-..|+++-+++-+.-+-.+.+..++++++++++...+|..+.+.|-..|-|..+
T Consensus 241 isy~s-----~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~ 303 (314)
T KOG1444|consen 241 ISYTS-----FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF 303 (314)
T ss_pred HHHHH-----HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence 22221 1111123444444454333345567778888899999999999999999999888654
No 29
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.6e-09 Score=98.33 Aligned_cols=220 Identities=15% Similarity=0.203 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhh
Q 019575 86 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKY 165 (339)
Q Consensus 86 ~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~ 165 (339)
.++.++.-+-.-++.|++-.+-.+..+++++=+++.+.++-++|+.+....+-.++.+|.++..+.|.+.+| .-+
T Consensus 114 ~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP-----NF~ 188 (367)
T KOG1582|consen 114 FLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP-----NFN 188 (367)
T ss_pred hhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC-----Ccc
Confidence 334444466668888999889999999999999999999999999999999999999999988766543322 225
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccc-hhchhhhccccchhHH
Q 019575 166 ILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWR-TLSGEMQGFGKGKVSY 244 (339)
Q Consensus 166 ~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~-~l~~~~~~f~~g~~~~ 244 (339)
.+|..++-+|-+.=|+..=+.|+.+++. +. ..+||.+|..-++.+.+.+.+..+||.- .++.-+ ++..-.|
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~-~~----ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fca---ehp~~ty 260 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMN-PA----SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCA---EHPVRTY 260 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhC-CC----CcceEEEeeecccHHHHHHHHHhcccchhhhHHHH---hCcHhHH
Confidence 7899999999999999777777777663 11 1389999999888888889999888732 221100 1111111
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 019575 245 VMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 245 ~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~ 319 (339)
-..+..+...|. ....+..++..-.++.+..+.|.+..++.+++.++|-.++|..-.-|..+++.|.....|.+
T Consensus 261 Gy~~~~s~~gyl-G~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 261 GYAFLFSLAGYL-GIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHhHh-hHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 111122222221 11234555555577788899999999999999999999999999999999999999888875
No 30
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.03 E-value=1.8e-09 Score=88.30 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=75.9
Q ss_pred HHHHHhhHHHHHHHHhhccCCCCCCCC--CCCchhHHHHHHHHHHHHHH-HHHHHHHHHhhccCChhHHHHHHHhHHHHH
Q 019575 42 TLVQTAAFPILYIPLFLLPASQEVSSS--SRYPSFVTLALVYLVLGAIL-AGDNMLYSVGLLYLSASTYSLICASQLAFN 118 (339)
Q Consensus 42 t~~~~~g~p~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~G~~~-~~~~~l~~~~l~ylp~st~sll~~s~~~ft 118 (339)
.++.....|.+.......+ +.++..+ .+++ +.+. ...|++. ..++.+|.+|++|.| +..+.+.+++|+|+
T Consensus 2 a~r~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~ 74 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRG-RLRDLFRALRRKP-WLWL----ILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFT 74 (113)
T ss_pred HHHHHHHHHHHHHHHHHHc-cHHHHHHHHHhCc-HHHH----HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHH
Confidence 4667777777766555522 1111000 1111 1112 2234444 477899999999999 58889999999999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 019575 119 AVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 153 (339)
Q Consensus 119 alfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~ 153 (339)
++++.+++|||++++++.++.+.++|++++..++.
T Consensus 75 ~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 75 ALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999987653
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.97 E-value=1.2e-07 Score=86.84 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=145.7
Q ss_pred hhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019575 23 AVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYL 102 (339)
Q Consensus 23 ~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~yl 102 (339)
+.=+.|--|.+-|. .=++++|-+.+--+++. +++++++ +.+++..+.+..+ |.-++..|++|+.++..+
T Consensus 27 Gas~Ak~LFP~vG~-~g~t~lRl~~aaLIll~---l~RPwr~---r~~~~~~~~~~~y----GvsLg~MNl~FY~si~ri 95 (292)
T COG5006 27 GASFAKSLFPLVGA-AGVTALRLAIAALILLA---LFRPWRR---RLSKPQRLALLAY----GVSLGGMNLLFYLSIERI 95 (292)
T ss_pred hHHHHHHHccccCh-hhHHHHHHHHHHHHHHH---HhhHHHh---ccChhhhHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 34456666766432 22455566655555432 2222222 2234455556656 777789999999999999
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 019575 103 SASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLL 182 (339)
Q Consensus 103 p~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly 182 (339)
|.+++.-+-.+.|+-.++++ .+|..-..| +.++..|..++.-...+.+ .-+..|..++++|+++|+.|
T Consensus 96 PlGiAVAiEF~GPL~vA~~~----sRr~~d~vw--vaLAvlGi~lL~p~~~~~~------~lDp~Gv~~Al~AG~~Wa~Y 163 (292)
T COG5006 96 PLGIAVAIEFTGPLAVALLS----SRRLRDFVW--VALAVLGIWLLLPLGQSVW------SLDPVGVALALGAGACWALY 163 (292)
T ss_pred cchhhhhhhhccHHHHHHHh----ccchhhHHH--HHHHHHHHHhheeccCCcC------cCCHHHHHHHHHHhHHHHHH
Confidence 99999999999999888765 455544445 4556677776642221111 22679999999999999999
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHHHHH-HHHHHHHhccccchhchhhhccccchhHHHHHHHHHHHHHHHHHhh
Q 019575 183 LSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATC-ICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVG 261 (339)
Q Consensus 183 ~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~-~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~g 261 (339)
.+.+|+.-+.. +-..-+..-+ +++.+ ++-+|..-.+. .+- ....-..+.-+.+..+++-|.+--+.
T Consensus 164 Iv~G~r~g~~~----~g~~g~a~gm---~vAaviv~Pig~~~ag~--~l~----~p~ll~laLgvavlSSalPYsLEmiA 230 (292)
T COG5006 164 IVLGQRAGRAE----HGTAGVAVGM---LVAALIVLPIGAAQAGP--ALF----SPSLLPLALGVAVLSSALPYSLEMIA 230 (292)
T ss_pred HHHcchhcccC----CCchHHHHHH---HHHHHHHhhhhhhhcch--hhc----ChHHHHHHHHHHHHhcccchHHHHHH
Confidence 99987776532 1111121111 22222 22244322221 110 00000011122233444444443333
Q ss_pred hcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 019575 262 VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFA 313 (339)
Q Consensus 262 v~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~ 313 (339)
...+... +=++..++++.+..+.+++++||++|..|..|+++++.+..
T Consensus 231 L~rlp~~----~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 231 LRRLPAR----TFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HhhCChh----HHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3333222 23455667744557999999999999999999999986554
No 32
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.96 E-value=1.7e-09 Score=99.39 Aligned_cols=205 Identities=17% Similarity=0.162 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc-----cCC--CCC
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV-----NEG--SEG 156 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~-----~~~--~~~ 156 (339)
.|. .+-.++| +++.|+|.+-++++..+.|.||++|++.++|||+|++..++..+.+.|++++.= +++ +++
T Consensus 106 mG~--tgvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~ 182 (346)
T KOG4510|consen 106 MGF--TGVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGED 182 (346)
T ss_pred hhh--hHHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccc
Confidence 355 4554666 999999999999999999999999999999999999999999999999998741 111 111
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhc
Q 019575 157 PSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQG 236 (339)
Q Consensus 157 ~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~ 236 (339)
.++. ....-|-..++.+.+.-|--.++ .|++.|+-.+...+ -|.++++.+..+++...-++++ +|.-.+.
T Consensus 183 ~s~~--~~~~~gt~aai~s~lf~asvyIi----lR~iGk~~h~~msv---syf~~i~lV~s~I~~~~ig~~~-lP~cgkd 252 (346)
T KOG4510|consen 183 SSQV--EYDIPGTVAAISSVLFGASVYII----LRYIGKNAHAIMSV---SYFSLITLVVSLIGCASIGAVQ-LPHCGKD 252 (346)
T ss_pred cccc--cccCCchHHHHHhHhhhhhHHHH----HHHhhccccEEEEe---hHHHHHHHHHHHHHHhhcccee-cCccccc
Confidence 1111 11234544445444444433333 35554443443222 3446677777777776666663 5543222
Q ss_pred -cccchhHHHHHHHHHHHHHHH-HHhhhcceeeeechhhHHHHHHHHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHH
Q 019575 237 -FGKGKVSYVMVIVWTAVSWQV-CSVGVVGLIYVVSSLFSNVISTSSLAIT-PVVSVIVFHDKVNGVKVIAMLMAIWGF 312 (339)
Q Consensus 237 -f~~g~~~~~~~lv~~~v~~q~-~~~gv~gl~~~~ssl~~~vv~~~~~pv~-~ilavi~f~e~~t~~k~ig~~l~l~G~ 312 (339)
+..+. +....+..|+ ..+|+.--..- ..-+++....+- .+..+++|||..|+...+|+++++...
T Consensus 253 r~l~~~------lGvfgfigQIllTm~lQiErAG-----pvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~ 320 (346)
T KOG4510|consen 253 RWLFVN------LGVFGFIGQILLTMGLQIERAG-----PVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSST 320 (346)
T ss_pred eEEEEE------ehhhhhHHHHHHHHHhhhhccC-----CeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhH
Confidence 11111 2222333333 22221111111 111222333333 478899999999999999999987433
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.90 E-value=2e-08 Score=81.54 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=87.8
Q ss_pred hhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 019575 23 AVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAI-LAGDNMLYSVGLLY 101 (339)
Q Consensus 23 ~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~~~~l~~~~l~y 101 (339)
..++.|...++ -+..++..++...+.+ +++.......++ ..+.+.+....... .|.+ .+..+.+++.++++
T Consensus 6 ~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 6 YSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLF----LGLLGTALAYLLYFYALKY 77 (126)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhH----hhccceehHHHHHHHHHHh
Confidence 45566666665 5778999999999998 544444422111 11112222222222 2443 47778999999999
Q ss_pred CChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 102 LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 102 lp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
+|++..+++..++|+++++++++++|||++++++.|+++.++|++++
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.83 E-value=4.3e-08 Score=86.72 Aligned_cols=212 Identities=17% Similarity=0.225 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhh
Q 019575 86 AILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKY 165 (339)
Q Consensus 86 ~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~ 165 (339)
++-...|++|-.+++-++++.++-+..++-.|+-+++.+.+|+|+.-.++.+.+++.-|+++++..|. + .+..
T Consensus 61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-----~--~a~e 133 (290)
T KOG4314|consen 61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-----E--HADE 133 (290)
T ss_pred EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-----h--hhhh
Confidence 34466789999999999999999999999999999999999999999999999999999988763321 1 2347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---hhhHHHHHHHHH-HHHHHHHHHHHhccccchhchhhhccccch
Q 019575 166 ILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSF---GVVLDMQIYTSF-VATCICIVGLFASGEWRTLSGEMQGFGKGK 241 (339)
Q Consensus 166 ~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~---~~~le~~~~~~l-~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~ 241 (339)
++|+.++++++.+.++|=++ ||+.+..-++ .+.+.-..+..+ +-..+- +-+..+|. +.+ +.|....
T Consensus 134 ~iGi~~AV~SA~~aAlYKV~----FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~-lIL~~T~V-E~~----qsFA~~P 203 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALYKVL----FKMFIGNANFGDAAHFMSCLGFFNLCFISFPA-LILAFTGV-EHL----QSFAAAP 203 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHH----HHHHhccCcchhHHHHHHHHHHHHHHHHhhhH-HHHHHhch-HHH----HHHhhCC
Confidence 89999999999999996555 7776543222 122221111111 001111 11112221 111 1221111
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-cceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 242 VSYVMVIVWTAVSWQVCSVGV-VGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 242 ~~~~~~lv~~~v~~q~~~~gv-~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
|-.++..+..|.+++.-+ .|+.. ...+.-++=..+.+|.....-+++=+-.++....+|..++..|+...+.-
T Consensus 204 ---WG~l~G~A~L~lAFN~~iN~GiaL-~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 204 ---WGCLCGAAGLSLAFNFLINFGIAL-LNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred ---chhhhhHHHHHHHHhhheeehhhh-hchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 122556666666654332 22222 23444444455667887777777777778889999999999888877663
No 35
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5.7e-09 Score=96.30 Aligned_cols=212 Identities=19% Similarity=0.245 Sum_probs=144.2
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHH
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILG 168 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G 168 (339)
..||+ .++|.|++-|.+=++...+||.+++|+++|||=+.+-..+..+.+.|--+ +++.+ +.++.-...|
T Consensus 117 ~fnnl----cL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-GvdqE-----~~~~~ls~~G 186 (347)
T KOG1442|consen 117 SFNNL----CLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-GVDQE-----GSTGTLSWIG 186 (347)
T ss_pred hccce----ehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-ccccc-----cccCccchhh
Confidence 67764 46899999999999999999999999999999888877666555544322 33221 1222235789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccc-hhHHHHH
Q 019575 169 FISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKG-KVSYVMV 247 (339)
Q Consensus 169 ~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g-~~~~~~~ 247 (339)
.+.-+.|+++-|+-.+. -||+.... -.-......|....|.+.++-.+.+.||++++ .+|.+- .+.++..
T Consensus 187 vifGVlaSl~vAlnaiy----tkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~v----~~~~~l~a~~Fw~~ 257 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIY----TKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQAV----VGFPHLPAIKFWIL 257 (347)
T ss_pred hHHHHHHHHHHHHHHHh----hheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHHH----cCcccchHHHHHHH
Confidence 99999999999984444 44432111 11234578888988888888778888988755 344333 2233332
Q ss_pred HHHHH-HHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccc
Q 019575 248 IVWTA-VSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 248 lv~~~-v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
+.... ..+...++. --.++.+|.++-++--+.+-....++|+.+++|.-+...+-+-++++.|...|.+-+.
T Consensus 258 mtLsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 258 MTLSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred HHHHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHH
Confidence 22221 222222221 1123456888877777777566689999999999999999999999999999987543
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.75 E-value=1.5e-09 Score=99.21 Aligned_cols=256 Identities=12% Similarity=0.176 Sum_probs=163.7
Q ss_pred CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 019575 34 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICAS 113 (339)
Q Consensus 34 gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s 113 (339)
|-|-|..|++..-+-..+..-|+..+++ + .-+-.+++ |+++++.=.-.|++-..+++|++-...+++-+=
T Consensus 44 ~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~----~~~~~~~h----Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcw 113 (336)
T KOG2766|consen 44 GINAPTSQTFLNYVLLALVYGPIMLFRR--K----YIKAKWRH----YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCW 113 (336)
T ss_pred cCCCccHHHHHHHHHHHHHHhhHHHhhh--H----HHHHHHHH----hhheeEEeecccEEEeeehhhcchHHHHHHHHh
Confidence 5688999999988877777766666431 1 00112333 444555545555666689999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019575 114 QLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKV 193 (339)
Q Consensus 114 ~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~ 193 (339)
..+-+++++++++|-|+.+.|+.|++++..|++++.++|-+.. +..++.|...|+++.+.+|-+||..-+.+|..-||.
T Consensus 114 aip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag-d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~ 192 (336)
T KOG2766|consen 114 AIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG-DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA 192 (336)
T ss_pred hhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc-cccCCCCCccCcEEEEecceeeeeccccHHHHHhcC
Confidence 9999999999999999999999999999999998876653221 111124578899999999999999877777777664
Q ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHhccc-cchhchhhhccccchhHHHHHHHHHHHHHHHHHhhhcceeeeechh
Q 019575 194 LKRQSFGVVLDMQIYTSFVATCICIVGLFASGE-WRTLSGEMQGFGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSL 272 (339)
Q Consensus 194 ~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~-~~~l~~~~~~f~~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl 272 (339)
. ..|.....++++++...+-.+.+.. ...+.. .++. .-+ +......+.++.+.-.-+....+..
T Consensus 193 -d------~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w---~~~i---~~y--l~f~L~MFllYsl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 193 -D------RVELMGFLGLFGAIISAIQFIFERHHVSTLHW---DSAI---FLY--LRFALTMFLLYSLAPILIKTNSATM 257 (336)
T ss_pred -c------HHHHHHHHHHHHHHHHHHHHhhhccceeeEee---hHHH---HHH--HHHHHHHHHHHHhhHHheecCCceE
Confidence 1 2577788888888888876544432 122221 1111 111 1222222222222211111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 273 FSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 273 ~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
++ ..+...=.+-+-+-.||-+++|.-.++...+..|+..|-..
T Consensus 258 ~n---lslLTsDmwsl~i~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 258 FN---LSLLTSDMWSLLIRTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred EE---hhHhHHHHHHHHHHHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 11 00111111223336788889999999999999988888443
No 37
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.57 E-value=3.6e-06 Score=75.92 Aligned_cols=211 Identities=16% Similarity=0.186 Sum_probs=130.4
Q ss_pred HHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHH
Q 019575 93 MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFIST 172 (339)
Q Consensus 93 ~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~ 172 (339)
+--.-+++|+|++.|++..-+..+..+.....++|.|.+.....+-.++.++.+.-.++|.+..... .+..-.|.+..
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~--~~~lN~GY~Wm 160 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK--AQILNPGYLWM 160 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH--hcccCCceEEE
Confidence 3344688999999999999999999999999999999999999999999998877555543211000 00011355556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHHHHHH
Q 019575 173 VGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVIVWTA 252 (339)
Q Consensus 173 l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~lv~~~ 252 (339)
....+..+.|...+ ||.+|.+. .--.|-.+|..+.+.++++.-.+..+||..- .-++.+..-. +.|-.
T Consensus 161 ~~NclssaafVL~m----rkri~ltN-f~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~------l~am~ 228 (309)
T COG5070 161 FTNCLSSAAFVLIM----RKRIKLTN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDS------LMAMF 228 (309)
T ss_pred ehhhHhHHHHHHHH----HHhhcccc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHH------HHHHH
Confidence 66666777766664 33333221 1125788999998888887655555577521 1123332211 11111
Q ss_pred HHHHHHHhhhcceeeee----chhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 253 VSWQVCSVGVVGLIYVV----SSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 253 v~~q~~~~gv~gl~~~~----ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
+ -.++.+|+---..|. ||.+-+.+-.+-.....+.+.++|+|+.+..++.+..+-...-+.|.+.
T Consensus 229 I-Sgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 229 I-SGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred H-HHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 1 112333322222232 3333333333333344688999999999999999988877555555553
No 38
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.39 E-value=1.1e-05 Score=74.47 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=81.1
Q ss_pred hhhhhhhhhHHHhhcc-CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHH
Q 019575 18 AGQAAAVILGRYYYDQ-GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAI-LAGDNMLY 95 (339)
Q Consensus 18 ~g~~~~~ll~r~y~~~-gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~-~~~~~~l~ 95 (339)
++-+...+..|...++ +.+...+..++...+.+++++...... + +...+......++.. |++ ......+|
T Consensus 138 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 209 (260)
T TIGR00950 138 ISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG---P-NPQALSLQWGALLYL----GLIGTALAYFLW 209 (260)
T ss_pred HHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC---C-CCCcchHHHHHHHHH----HHHHHHHHHHHH
Confidence 3344556667766654 333445555677777766654433311 1 111111111112222 322 25566889
Q ss_pred HHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 019575 96 SVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSA 145 (339)
Q Consensus 96 ~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~ 145 (339)
+.+++++|++..+++..++|++++++++++++||+++.++.|.++.+.|+
T Consensus 210 ~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999885
No 39
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.36 E-value=6e-06 Score=78.97 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCC
Q 019575 76 TLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGS 154 (339)
Q Consensus 76 ~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~ 154 (339)
+++.++. ++++..+.+-..++.+.|++..+-+.+.+++++++++.+++|||++++.+.|.++..+|.+++...+.+
T Consensus 51 ~~W~~G~---~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~ 126 (300)
T PF05653_consen 51 PLWWIGL---LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPK 126 (300)
T ss_pred HHHHHHH---HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCC
Confidence 4454533 233566677789999999999999999999999999999999999999999999999999887654433
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.31 E-value=7.8e-06 Score=66.79 Aligned_cols=63 Identities=6% Similarity=0.017 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 87 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 87 ~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
.++....++..+++.+|.|.+..+-++.++++++.+++++|||+|++|+.|+++..+|+++++
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 346777999999999999999999999999999999999999999999999999999999875
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.31 E-value=4.7e-06 Score=68.97 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=92.0
Q ss_pred hHHHHHhhhhhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCC-CCCCCCCchhHHHHHHHHHHHHHHH
Q 019575 11 YKSLNSMAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQE-VSSSSRYPSFVTLALVYLVLGAILA 89 (339)
Q Consensus 11 ~~~~~~~~g~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~G~~~~ 89 (339)
++.++-...-..+|+.+|.=-+ |-.+-++|.+-+...-+.+......+.+.+ .++. .+|-+..-+..|+..+
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-----~~k~~lflilSGla~g 78 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-----GPKSWLFLILSGLAGG 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccccc-----CcceehhhhHHHHHHH
Confidence 3444444555667888887543 233445555555555444433333221111 1111 2233334456788888
Q ss_pred HHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 90 GDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 90 ~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
..-++|+.+++.=++|-..=+-.+.+++++++|++++|||+|..+++|+++.++|++++.
T Consensus 79 lswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 79 LSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 888999999999999989999999999999999999999999999999999999998764
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.27 E-value=0.00019 Score=67.39 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHH-HhHHHHHHHHHHHHhccccchHHHH----HHHHHHHHHHHHh
Q 019575 75 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLIC-ASQLAFNAVFSYFINSQKFTALILN----SVVILSLSAALIA 149 (339)
Q Consensus 75 ~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~-~s~~~ftalfs~~~lkek~t~~~i~----slvl~~~G~~ll~ 149 (339)
.+.+..++++|++-+..|...+.|++++.+|..-=+. ..|++.|.+.++++++|--+..++. ++++..+|+.+..
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 3677888899999999998888999988777655444 7799999999999999988877654 8888889998876
Q ss_pred ccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 150 VNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQL 188 (339)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~ 188 (339)
.++.+++ +++++++..-|+...+.+++.|..|.++.|.
T Consensus 122 ~~~~~~~-~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 122 YQDKKSD-KSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred ccccccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6554332 1222345667999999999999999888544
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.25 E-value=2.9e-05 Score=65.92 Aligned_cols=129 Identities=18% Similarity=0.107 Sum_probs=93.9
Q ss_pred hhhhhhhhHHHhhcc------CCCchhHHHHHHHhhHHHHHHHHhhccCCCCC----CCCC-CCchhHHHHHHHHHHHHH
Q 019575 19 GQAAAVILGRYYYDQ------GGNSKWLATLVQTAAFPILYIPLFLLPASQEV----SSSS-RYPSFVTLALVYLVLGAI 87 (339)
Q Consensus 19 g~~~~~ll~r~y~~~------gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~G~~ 87 (339)
.++.-.++.|..+++ +-++.-+..+....++++++++.++.-..+.. +... +.+..++....-+..|++
T Consensus 11 ~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (153)
T PF03151_consen 11 FSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLL 90 (153)
T ss_pred HHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 344446666666655 44778889999999999998877664222210 0000 001122333333445666
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 019575 88 LAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 147 (339)
Q Consensus 88 ~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~l 147 (339)
-...|+.-+.-++++++-+++++...+-+.+.+++.++++|++|..++.|++++++|..+
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 677778888999999999999999999999999999999999999999999999999864
No 44
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.15 E-value=7.6e-05 Score=73.13 Aligned_cols=69 Identities=7% Similarity=-0.006 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEG 153 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~ 153 (339)
|+..+....+|++++++++++..++....+|+|++++++++++|++++.+++|.++...|+.+...+..
T Consensus 263 ~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 263 AIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 343455668899999999999999999999999999999999999999999999999999998865443
No 45
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.97 E-value=0.00045 Score=65.52 Aligned_cols=62 Identities=15% Similarity=0.092 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
.....+|+.+++++|++..+++...+|++++++++++++|++++.++.|.++.+.|++....
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 45557999999999999999999999999999999999999999999999999999887643
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.90 E-value=0.00037 Score=66.19 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
|+..+....+|+.+++++|++..+++...+|++++++++++++|++++.++.|.++.+.|+.+...
T Consensus 222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 455566779999999999999999999999999999999999999999999999999999887643
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.90 E-value=0.0005 Score=65.14 Aligned_cols=62 Identities=5% Similarity=0.025 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
+....+|+.+++++|++..+++..++|++++++++++++|++++.++.|.++...|+.++..
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 55668999999999999999999999999999999999999999999999999999988754
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.87 E-value=0.00024 Score=67.47 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=80.7
Q ss_pred CchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHhH
Q 019575 36 NSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLL-YLSASTYSLICASQ 114 (339)
Q Consensus 36 ~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~-ylp~st~sll~~s~ 114 (339)
-+++-.++.|..|+.+--..++..+. +. +|..++........|++.+..+.+|..|.+ ++++++++++.+..
T Consensus 176 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~ 248 (290)
T TIGR00776 176 VDGLSVLLPQAIGMVIGGIIFNLGHI--LA-----KPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLG 248 (290)
T ss_pred CCcceehhHHHHHHHHHHHHHHHHHh--cc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHH
Confidence 45566666666665554433333221 11 222222333334478888888899999999 99999999999999
Q ss_pred HHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHHhc
Q 019575 115 LAFNAVFSYFINSQKFTALIL----NSVVILSLSAALIAV 150 (339)
Q Consensus 115 ~~ftalfs~~~lkek~t~~~i----~slvl~~~G~~ll~~ 150 (339)
|+.+++++++++||+.+++++ .|.++...|+.+++.
T Consensus 249 pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 249 VIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999999999999999999 999999999988764
No 49
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.86 E-value=0.00013 Score=68.74 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 147 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~l 147 (339)
.++..+..+.+|+.++++.|++..+.+.+.+|+++.+++++++||++++.++.|.++.++|+.+
T Consensus 217 ~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 217 GGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3455566778999999999999999999999999999999999999999999999999999876
No 50
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=3.8e-05 Score=72.84 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCC
Q 019575 87 ILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSE 155 (339)
Q Consensus 87 ~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~ 155 (339)
+++..+..=+-|+.|-|++.-+=+-+.+.+++++++..++|||++..-.+|.+++++|..++..+...+
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 445555666789999999999999999999999999999999999999999999999998887665443
No 51
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.68 E-value=0.0018 Score=61.57 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 84 LGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 84 ~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
.|+..+.-+.+|..++++.|++..+++...+|+++.++++++++|++++.++.|.++..+|+.++..+
T Consensus 219 ~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 219 AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35445666799999999999999999999999999999999999999999999999998888877543
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.54 E-value=0.0007 Score=55.13 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhccCChhH-HHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 89 AGDNMLYSVGLLYLSAST-YSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st-~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
+....+...+++.+|.++ |++-.....+.+++.+++++||++++.|+.++.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 667788889999999987 567777899999999999999999999999999999999876
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.52 E-value=0.00058 Score=64.87 Aligned_cols=59 Identities=15% Similarity=-0.051 Sum_probs=55.0
Q ss_pred HHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 91 DNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 91 ~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
-|.+++.++++++++++++....+|++++++++++++|++|..++.|.++.+.|+.+..
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 34677789999999999999999999999999999999999999999999999998865
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.51 E-value=0.0046 Score=58.77 Aligned_cols=63 Identities=6% Similarity=-0.021 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
+....+|..++++++++..+++...+|++++++++++++|++++.+++|.++.++|+.+...+
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 456688999999999999999999999999999999999999999999999999999876543
No 55
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.45 E-value=0.00089 Score=56.18 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHH--HhccccchHHHHHHHHHHHHHHHHhc
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYF--INSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~--~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
+....+|..+++..|+|.+.-+.+....++++.++. ++||++|+.|+.|+++.++|+.++..
T Consensus 59 ~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 59 ALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 555689999999999999999998888888888885 89999999999999999999999753
No 56
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.42 E-value=0.0016 Score=53.88 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhccCChhHHHHH-HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 019575 88 LAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 152 (339)
Q Consensus 88 ~~~~~~l~~~~l~ylp~st~sll-~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~ 152 (339)
++....++..+++++|.+++--+ .....+.+++.++++++|++|+.++.++.+.++|++++-..+
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 36777888999999999986555 579999999999999999999999999999999998875443
No 57
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0013 Score=53.07 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccCChhH-HHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 89 AGDNMLYSVGLLYLSAST-YSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st-~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
+....+...+++++|.++ |++-.....+-+++.+++++|||+++.+++++.+..+|++.+-
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 666788889999999987 5788888999999999999999999999999999999998874
No 58
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.41 E-value=0.0016 Score=53.10 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhccCChhHHHHH-HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 89 AGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll-~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
+....++..+++.+|.|++--+ .....+.+++.+.+++||++|+.++.++.+.++|++++-.
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6666888899999999986555 5689999999999999999999999999999999999854
No 59
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.40 E-value=0.0015 Score=52.78 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhccCChhH-HHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 89 AGDNMLYSVGLLYLSAST-YSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st-~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
+....+...+++.+|.++ |++-.....+.+++.+++++|||+++.|+.++.+..+|++.+-
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 666788889999999987 5666779999999999999999999999999999999998873
No 60
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.34 E-value=0.0045 Score=51.54 Aligned_cols=131 Identities=15% Similarity=0.241 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHHHHH
Q 019575 169 FISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVMVI 248 (339)
Q Consensus 169 ~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~~l 248 (339)
.+.++.++..+++--+.++...|.+ +.+....+. .++....+..-.+..|+|+ .+.|... +.+....++=
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IR------tiVi~~~l~~v~~~~g~~~-~~~~~~~--k~~lflilSG 74 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIR------TIVILIFLLIVLLVTGNWQ-AGGEIGP--KSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHH------HHHHHHHHHHHHHhcCcee-cccccCc--ceehhhhHHH
Confidence 3567778888887555544444432 111111222 2333334444455667765 2222111 1111112233
Q ss_pred HHHHHHHHHHHhh-hcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 019575 249 VWTAVSWQVCSVG-VVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 314 (339)
Q Consensus 249 v~~~v~~q~~~~g-v~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~ 314 (339)
+.+.++|.+++.. -.|-...+..+-+ ..+.++.++++++++|++|..+.+|++++..|...
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk-----~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDK-----TSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEccc-----ccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 5667888886644 2232222222111 34356679999999999999999999999988653
No 61
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.23 E-value=0.0029 Score=50.85 Aligned_cols=45 Identities=9% Similarity=0.213 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 273 FSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 273 ~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
..+.+....++++.++++++++|++++.+.+|+++++.|.....|
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~~ 126 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIST 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 455556666456679999999999999999999999998876543
No 62
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.16 E-value=0.17 Score=49.38 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH-HHHHhHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHH
Q 019575 75 VTLALVYLVLGAILAGDNMLYSVGLLYLSASTYS-LICASQLAFNAVFSYFINSQK-------FTALILNSVVILSLSAA 146 (339)
Q Consensus 75 ~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~s-ll~~s~~~ftalfs~~~lkek-------~t~~~i~slvl~~~G~~ 146 (339)
.+.+..+...|++=+..|..+..+++|+.+|... +-...|++++.++..++++|= -...-..|+++.++|++
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 3566677889999999999999999999888665 445679999999999998752 23456788999999999
Q ss_pred HHhc----cCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 019575 147 LIAV----NEGSEGPSKVSKWKYILGFISTVGASAIYSLLL 183 (339)
Q Consensus 147 ll~~----~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~ 183 (339)
+.+. .+.+++.++.++.+..-|++.++.+++.|+.|.
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 9876 322111111223456789999999999999987
No 63
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.14 E-value=0.011 Score=57.68 Aligned_cols=64 Identities=19% Similarity=0.001 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
|+.....|..-+++++.+++.++++....+++++.++++++++|++|+.++.|.++.+.|+.+.
T Consensus 283 ~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 283 GVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 4444444444447999999999999999999999999999999999999999999999999775
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.04 E-value=0.035 Score=51.19 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=59.1
Q ss_pred HHHHHH-HHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 84 LGAILA-GDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 84 ~G~~~~-~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
.|+... ..+.+|..+++..|++..+.+..+.|++++++++++++|++++.++.|..+.+.|+.+...
T Consensus 220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 220 LGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 344444 4668888999999999999999999999999999999999999999999999999888753
No 65
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.96 E-value=0.003 Score=49.82 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccCChhHH-HHHHHhHHHHHHHHHHHHhccccchHHHHHHHH
Q 019575 88 LAGDNMLYSVGLLYLSASTY-SLICASQLAFNAVFSYFINSQKFTALILNSVVI 140 (339)
Q Consensus 88 ~~~~~~l~~~~l~ylp~st~-sll~~s~~~ftalfs~~~lkek~t~~~i~slvl 140 (339)
++....++..+++++|.|++ .+......+.+++.+.+++||++|+.|+.++.+
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 36677899999999999987 666779999999999999999999999999876
No 66
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.78 E-value=0.07 Score=49.25 Aligned_cols=138 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchh--HHH
Q 019575 168 GFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKV--SYV 245 (339)
Q Consensus 168 G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~--~~~ 245 (339)
|.++.+.|++.||...+..+. . . ...+.|+.++=.+++.+.+.......++.+...+..+.....+. ...
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~----~-~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL----L-K---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH----h-c---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence 888999999999996666543 1 1 13357788888877776655443333332211000010001100 011
Q ss_pred HHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 246 MVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 246 ~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
..-+.....+.....+.. +++...++++....+..+.+++.++++|+++..+.+|+++.+.|+..-..
T Consensus 75 ~~g~~~~~~~~~~~~a~~----~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVN----NGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHHHHHH----cchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 111112222222222211 22333455555555335679999999999999999999999999876543
No 67
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.54 E-value=0.034 Score=52.95 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=83.9
Q ss_pred hhhhhhhhhHHHhhccCCCch-hHHHHHHHhhHHHHHHHHhhcc--CCCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 019575 18 AGQAAAVILGRYYYDQGGNSK-WLATLVQTAAFPILYIPLFLLP--ASQE-VSSSSRYPSFVTLALVYLVLGAILAGDNM 93 (339)
Q Consensus 18 ~g~~~~~ll~r~y~~~gg~~~-w~~t~~~~~g~p~l~~~~~~~~--~~~~-~~~~~~~~~~~~l~~~~~~~G~~~~~~~~ 93 (339)
+.+.......+..|++.+.++ =+-......+.|++++.....+ ..++ .+.....|.....++....+|. ..++.
T Consensus 164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~--~g~~~ 241 (303)
T PF08449_consen 164 LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGA--LGQFF 241 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH
Confidence 344444445555555544444 4566678888888876665522 0011 0111122332233333343444 44445
Q ss_pred HHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 94 LYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 94 l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
.+ .-.+..++-+.+++.++.-+++.++|++++++++++.+|.|+++.+.|..+-.
T Consensus 242 i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 242 IF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS 296 (303)
T ss_pred HH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence 55 44677899999999999999999999999999999999999999999987754
No 68
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.49 E-value=0.0072 Score=54.83 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=83.7
Q ss_pred HHHhhhhhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhcc--CCCC--CCCCC-CCchhHHHHHHHHHHHHHH
Q 019575 14 LNSMAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLP--ASQE--VSSSS-RYPSFVTLALVYLVLGAIL 88 (339)
Q Consensus 14 ~~~~~g~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~--~~~~--~~~~~-~~~~~~~l~~~~~~~G~~~ 88 (339)
+.++.+.+...=+...|.+++-+++=...+.|....|+..++....- .... ..... ........+. ..+..
T Consensus 87 ~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 162 (222)
T TIGR00803 87 LSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI----VGLLN 162 (222)
T ss_pred HHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH----HHHHH
Confidence 44455556555677777776433333347777777777665532210 0011 00100 0011111221 23444
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAA 146 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ 146 (339)
+....+..+-++|.+..+.++..+..+++++++|+++++|+++..++.|+.+.+.|+.
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 5666777789999999999999999999999999999999999999999999887753
No 69
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.44 E-value=0.071 Score=43.15 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccc
Q 019575 276 VISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 276 vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
.+....+.++.+++.++++|+++..+++|.++++.|+..-.+++.
T Consensus 65 ~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 65 AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 444444335579999999999999999999999999999888754
No 70
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.82 E-value=0.26 Score=46.60 Aligned_cols=135 Identities=13% Similarity=0.193 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhccccchhHHH
Q 019575 166 ILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQGFGKGKVSYV 245 (339)
Q Consensus 166 ~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~ 245 (339)
.-|+++++.|.+.||..-.+ +|-+ +. ....|+..+=-+++.++..+-+...++++++.. ..++.+....
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y----~kll-~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~---~~~~p~~~~~ 74 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLY----FKLL-EP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ---LLKQPKTLLM 74 (293)
T ss_pred cchhHHHHHHHHHHHHHHHH----HHHH-cc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhCcHHHHH
Confidence 35999999999999994333 3333 22 224677777777777777766666677765532 2222221111
Q ss_pred --HHHHHHHHHHHHHHhhh-cceeeeechhhHHHHHHHHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 246 --MVIVWTAVSWQVCSVGV-VGLIYVVSSLFSNVISTSSLAIT-PVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 246 --~~lv~~~v~~q~~~~gv-~gl~~~~ssl~~~vv~~~~~pv~-~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
++-.--..+|-++.-.+ .|..-. ++. --+..|++ .+++.++++|+++..|.++.+++..|+..-..
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~le-----aSL-GY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLE-----ASL-GYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhH-----HHh-HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 11122224555433221 222222 111 12334866 69999999999999999999999999987654
No 71
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.79 E-value=0.054 Score=50.29 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 019575 93 MLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAA 146 (339)
Q Consensus 93 ~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ 146 (339)
.+=..+++.+|..+++++.+..|.+.++-..++++|++|..||.+++...++++
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 455678899999999999999999999999999999999999999988877664
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=95.78 E-value=0.25 Score=41.79 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=75.3
Q ss_pred HHHHhhhhhhhhhhHHHh--hcc-CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 019575 13 SLNSMAGQAAAVILGRYY--YDQ-GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILA 89 (339)
Q Consensus 13 ~~~~~~g~~~~~ll~r~y--~~~-gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~ 89 (339)
.++.+.+++..++-..+- ..+ -|+..+-+.+.+..|+..+.+..++.+.+ + .+ ..+..++....+-.+|....
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~-~--~~-~~~~~p~w~~lGG~lG~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP-S--LA-SLSSVPWWAYLGGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc-c--cc-hhccCChHHhccHHHHHHHH
Confidence 334444445554443331 112 33444445555666777776655553321 1 11 11222334444455566333
Q ss_pred HHHHHHHHhhccCChhHHHH-HHHhHHHHHHHHHHH----HhccccchHHHHHHHHHHHHHHH
Q 019575 90 GDNMLYSVGLLYLSASTYSL-ICASQLAFNAVFSYF----INSQKFTALILNSVVILSLSAAL 147 (339)
Q Consensus 90 ~~~~l~~~~l~ylp~st~sl-l~~s~~~ftalfs~~----~lkek~t~~~i~slvl~~~G~~l 147 (339)
. +-......+.++.... ....|++..+++..+ .-|+|++++|+.|+.++.+|+.+
T Consensus 79 ~---~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 L---SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred H---HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3 3335566677766554 456699999999997 78999999999999999999863
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.22 E-value=0.29 Score=46.10 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=70.7
Q ss_pred CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHh
Q 019575 34 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICAS 113 (339)
Q Consensus 34 gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s 113 (339)
.+-+.|-..+-|..|+-+-.+.+.... +++ ..++...+. ...|++-+.-|+.|..+.+..-++++-.+.|+
T Consensus 160 ~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~---~~~k~~~~n-----il~G~~w~ignl~~~is~~~~G~a~af~lSQ~ 230 (269)
T PF06800_consen 160 FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKP---FFEKKSWKN-----ILTGLIWGIGNLFYLISAQKNGVATAFTLSQL 230 (269)
T ss_pred cCCChhHhHHHHHHHHHHHHHHHhhcc-ccc---ccccchHHh-----hHHHHHHHHHHHHHHHhHHhccchhhhhHHhH
Confidence 445677888888888876654444322 111 111222222 33588899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHH
Q 019575 114 QLAFNAVFSYFINSQKFTALILNSV 138 (339)
Q Consensus 114 ~~~ftalfs~~~lkek~t~~~i~sl 138 (339)
.++.+.+.+.+++|||=+++++.-+
T Consensus 231 ~vvIStlgGI~il~E~Kt~ke~~~~ 255 (269)
T PF06800_consen 231 GVVISTLGGIFILKEKKTKKEMIYT 255 (269)
T ss_pred HHHHHHhhhheEEEecCchhhHHHH
Confidence 9999999999999999998876433
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.48 E-value=0.17 Score=48.40 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 282 LAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 282 ~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
+....+++-.++||+++....+|+.+++.|......
T Consensus 87 lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 87 LVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred hhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 345578999999999999999999999999887654
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=94.45 E-value=0.13 Score=42.55 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 281 SLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 281 ~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
....+.+.++++|||++|+.|.+|+.+++.|+..-
T Consensus 67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l 101 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI 101 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 33456789999999999999999999999988765
No 76
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.40 E-value=1 Score=44.07 Aligned_cols=80 Identities=14% Similarity=0.199 Sum_probs=64.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH---HH-HhHHHHHHHHHHHHhccccc------hHHHHHHHH
Q 019575 71 YPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSL---IC-ASQLAFNAVFSYFINSQKFT------ALILNSVVI 140 (339)
Q Consensus 71 ~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sl---l~-~s~~~ftalfs~~~lkek~t------~~~i~slvl 140 (339)
++.+.|-.+.+++.|++-..++..|.+|-..++++...+ ++ |+.+++..+-+. ++||+=+ +..+.++++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHH
Confidence 344456667888899999999999999998886665555 66 888899999888 5999877 667888888
Q ss_pred HHHHHHHHhcc
Q 019575 141 LSLSAALIAVN 151 (339)
Q Consensus 141 ~~~G~~ll~~~ 151 (339)
.++|+++++.+
T Consensus 332 iI~g~~lig~~ 342 (345)
T PRK13499 332 IILAANIVGLG 342 (345)
T ss_pred HHHHHHHHhhc
Confidence 88888888754
No 77
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.22 E-value=0.0037 Score=57.55 Aligned_cols=147 Identities=17% Similarity=0.153 Sum_probs=101.9
Q ss_pred cCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH-H
Q 019575 33 QGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLI-C 111 (339)
Q Consensus 33 ~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll-~ 111 (339)
+-|.+|-=|++=++.|--+..+.++++. ++ -.+.+.++++...|++-+..|..-+-|.+++.+|-+.=+ .
T Consensus 23 k~GG~p~qQ~lGtT~GALifaiiv~~~~--~p-------~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiSt 93 (288)
T COG4975 23 KFGGKPYQQTLGTTLGALIFAIIVFLFV--SP-------ELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPIST 93 (288)
T ss_pred ecCCChhHhhhhccHHHHHHHHHHheee--cC-------ccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccc
Confidence 3445677777777777766666666542 11 124567888888999989888888788888766655433 3
Q ss_pred HhHHHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 019575 112 ASQLAFNAVFSYFINSQKFTALIL----NSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQ 187 (339)
Q Consensus 112 ~s~~~ftalfs~~~lkek~t~~~i----~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e 187 (339)
.+|++-+.+|+++.++|=-+..|+ .++++..+|+.+-..++..++ .+++.++.--|+...+.+++.|-.|.++.|
T Consensus 94 G~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk-~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~ 172 (288)
T COG4975 94 GMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK-EEENPSNLKKGIVILLISTLGYVGYVVLFQ 172 (288)
T ss_pred hhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc-cccChHhhhhheeeeeeeccceeeeEeeec
Confidence 579999999999999998888775 356666666655444332211 122234466799988899999999888854
Q ss_pred HH
Q 019575 188 LS 189 (339)
Q Consensus 188 ~~ 189 (339)
..
T Consensus 173 ~f 174 (288)
T COG4975 173 LF 174 (288)
T ss_pred cc
Confidence 43
No 78
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=93.73 E-value=1.2 Score=43.43 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=78.7
Q ss_pred hccCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 019575 31 YDQGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLI 110 (339)
Q Consensus 31 ~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll 110 (339)
..++-++.=+..++...|..+..+.+.+.. ++.=++. ++..+.....+...+.+.....+....+++.++...++=
T Consensus 190 ~v~~~~~~~~lg~~Glfg~ii~~iq~~ile--~~~i~~~--~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLs 265 (334)
T PF06027_consen 190 LVKKAPRVEFLGMLGLFGFIISGIQLAILE--RSGIESI--HWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLS 265 (334)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHHHHhee--hhhhhcc--CCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehH
Confidence 334445666778888888888876655532 2210111 122222322222233234444455667778888888888
Q ss_pred HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 019575 111 CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 152 (339)
Q Consensus 111 ~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~ 152 (339)
..+..+.++++..++.++++++..+.|.++..+|.++...++
T Consensus 266 LLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 266 LLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 888899999999999999999999999999999998875544
No 79
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.58 E-value=0.18 Score=41.32 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHhhccCChhHHHHH-HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 019575 93 MLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 147 (339)
Q Consensus 93 ~l~~~~l~ylp~st~sll-~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~l 147 (339)
..|++.+...|.|...-+ +++.-+||++.++++.+|..+++.+.|+.+...|+.+
T Consensus 56 v~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 56 VLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 888899999999998888 5999999999999999999999999999999999865
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=92.67 E-value=1.5 Score=35.48 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 279 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 279 ~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
-.....+.+.++++|+|+++..|++|+.+++.|+..-
T Consensus 65 GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 65 GIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3455667899999999999999999999999998764
No 81
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=92.14 E-value=0.45 Score=38.68 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 283 AITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 283 pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
..+.++++++|||++|+.|.+|..+++.|+..-
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999999999998653
No 82
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=92.11 E-value=2.1 Score=34.77 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 280 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 280 ~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
+....+.+.++++|+|++|+.|.+|+.+++.|+..-
T Consensus 66 lG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l 101 (110)
T PRK09541 66 VGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI 101 (110)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 344566799999999999999999999999888775
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.76 E-value=0.39 Score=46.33 Aligned_cols=61 Identities=23% Similarity=0.043 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 89 AGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 89 ~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
-+.|+.-++-+..+++-|+++....+-++..+.+++++++++|+.+..|..++++|+.+-.
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 3444555599999999999999999999999999999999999999999999999998853
No 84
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=91.57 E-value=3.3 Score=33.67 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q 019575 279 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFAS 314 (339)
Q Consensus 279 ~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~ 314 (339)
-.....+.+.++++|||++|+.|.+|+.+++.|+..
T Consensus 70 GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 70 GFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 344456679999999999999999999999998865
No 85
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=91.09 E-value=1.8 Score=36.26 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=26.7
Q ss_pred HHHHHHH--HHhCCcchhHHHHHHHHHHHHHHHHH
Q 019575 284 ITPVVSV--IVFHDKVNGVKVIAMLMAIWGFASYI 316 (339)
Q Consensus 284 v~~ilav--i~f~e~~t~~k~ig~~l~l~G~~~y~ 316 (339)
.+.+.++ ++|||++|+.|.+|.++++.|+....
T Consensus 87 ~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 87 LVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4455565 38999999999999999998877743
No 86
>PRK11431 multidrug efflux system protein; Provisional
Probab=91.04 E-value=3 Score=33.60 Aligned_cols=36 Identities=3% Similarity=0.252 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 280 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 280 ~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
.....+.+.++++|+|++|+.|.+|+.+++.|+..-
T Consensus 65 iG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 65 IGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 444566799999999999999999999999988764
No 87
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.83 E-value=1.9 Score=41.86 Aligned_cols=146 Identities=14% Similarity=0.201 Sum_probs=89.6
Q ss_pred CchhHHHHHHHhhHHHHHHHHhhccCCCCC--CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhH-HHHHHH
Q 019575 36 NSKWLATLVQTAAFPILYIPLFLLPASQEV--SSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSAST-YSLICA 112 (339)
Q Consensus 36 ~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st-~sll~~ 112 (339)
+=.|=+.|.-..=+.-++.|.......-++ +.-...|. ..+......|++-+..++.|-.+++|+-.|. .++...
T Consensus 31 ~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~--~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lG 108 (344)
T PF06379_consen 31 GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPA--STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALG 108 (344)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCCh--hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHH
Confidence 446777777777677776666542111110 00001111 1233445579999999999999999977764 334444
Q ss_pred hHHHHHHHHHHHH-------hccccchHHHHHHHHHHHHHHHHhccCC---CCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 019575 113 SQLAFNAVFSYFI-------NSQKFTALILNSVVILSLSAALIAVNEG---SEGPSKVSKWKYILGFISTVGASAIYSLL 182 (339)
Q Consensus 113 s~~~ftalfs~~~-------lkek~t~~~i~slvl~~~G~~ll~~~~~---~~~~~~~~~~~~~~G~~l~l~Aa~~~aly 182 (339)
+-..+-.+.--++ +.++-.+..+.|+++..+|+++.+.... .+...+.++.+.-.|.++++.+.++++..
T Consensus 109 l~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~f 188 (344)
T PF06379_consen 109 LCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACF 188 (344)
T ss_pred HHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 4444444443443 2334456889999999999999864331 11122333455678999999999999884
Q ss_pred H
Q 019575 183 L 183 (339)
Q Consensus 183 ~ 183 (339)
-
T Consensus 189 n 189 (344)
T PF06379_consen 189 N 189 (344)
T ss_pred H
Confidence 3
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.84 E-value=9.6 Score=32.79 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=66.8
Q ss_pred cCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH
Q 019575 33 QGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICA 112 (339)
Q Consensus 33 ~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~ 112 (339)
+..+++..+++..+..=-+++..+.+...++. ... ..+..+++..++-++|..+...+.+..- +.=.+-+-.++.+
T Consensus 29 ~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a-~~~~~pwW~~~GG~lGa~~vt~s~~l~p--~lGa~~t~~l~i~ 104 (150)
T COG3238 29 RYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLA-AVASAPWWAWIGGLLGAIFVTSSILLAP--RLGAATTIALVIA 104 (150)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chh-hccCCchHHHHccchhhhhhhhhHHhcc--chhHHHHHHHHHH
Confidence 34467777777776554443333333322222 111 1222233444544566655555543311 1123445667788
Q ss_pred hHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHHH
Q 019575 113 SQLAFNAVFSYFINS----QKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 113 s~~~ftalfs~~~lk----ek~t~~~i~slvl~~~G~~ll 148 (339)
.|.+..++.-.+=.. +++++.++.++++..+|+.++
T Consensus 105 gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 105 GQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 899999998887555 999999999999999995554
No 89
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=87.83 E-value=0.12 Score=48.37 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHH-HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccccchhccccCCCCCCCCCC
Q 019575 280 SSLA-ITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDDYRSRKSRYDGETRNDP 339 (339)
Q Consensus 280 ~~~p-v~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~~~~~~~~~~~~~~~~~~ 339 (339)
+..| .+.++++++++|++|.....|..+.+.|+...+.-++.=...++.+++++.|..||
T Consensus 131 FssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~ 191 (346)
T KOG4510|consen 131 FSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIP 191 (346)
T ss_pred ecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCC
Confidence 3336 56799999999999999999999999999988776665555555566666555444
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=87.47 E-value=1.1 Score=41.70 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhccccc
Q 019575 276 VISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLD 322 (339)
Q Consensus 276 vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~ 322 (339)
+..-.+++.+.++++++++.+++..|++++.+...|....-+++..+
T Consensus 48 vl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 48 VLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34446778889999999999999999999999999888876655433
No 91
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=86.12 E-value=1.9 Score=40.77 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred hHHHHHhhhhhhhhhhHHHhhccCCCchhHHHHHHHhhHHHHHHHHhhccCCCC---CCCC-----CCCchhHHHHHHHH
Q 019575 11 YKSLNSMAGQAAAVILGRYYYDQGGNSKWLATLVQTAAFPILYIPLFLLPASQE---VSSS-----SRYPSFVTLALVYL 82 (339)
Q Consensus 11 ~~~~~~~~g~~~~~ll~r~y~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~---~~~~-----~~~~~~~~l~~~~~ 82 (339)
++.+.++.+.-.+---.+.|-.+|.+.+=.-+..+....|..++..-=...+-+ .++. ...+ .+..+ .+.
T Consensus 168 lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~~-~yL 245 (330)
T KOG1583|consen 168 LLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSMW-VYL 245 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHHH-HHH
Confidence 444455555444444455555567777778888888888876532110000000 1111 1111 22222 222
Q ss_pred HHHHHHHHHHHHHHHhhcc----CChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 83 VLGAILAGDNMLYSVGLLY----LSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 83 ~~G~~~~~~~~l~~~~l~y----lp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
++- .+.|..-.-|..- .++-|.+++....=.++.++|.+.++.++|+++|+|..+.++|..+.+
T Consensus 246 -l~n--~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 246 -LFN--VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred -HHH--HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 223 3333322233333 444556667777889999999999999999999999999999998875
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=83.18 E-value=1.5 Score=40.48 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
++.-++.|.+.+.-..+-.+-+-|++.++.-.||.+.|+++++.+++.+||+|-++.+.|...-.
T Consensus 248 ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 248 AIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 44445566666677878778888899999999999999999999999999999999998865543
No 93
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=80.30 E-value=24 Score=34.39 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccchhcc
Q 019575 299 GVKVIAMLMAIWGFASYIYQNYLDDYRSR 327 (339)
Q Consensus 299 ~~k~ig~~l~l~G~~~y~y~~~~~~~~~~ 327 (339)
..-++|.++++.|++..-+....+||+..
T Consensus 135 ~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~ 163 (344)
T PF06379_consen 135 QIVLLGVAVCLIGIAICGKAGSMKEKELG 163 (344)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHhhhhhhc
Confidence 46789999999999999888776666543
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=78.84 E-value=3.5 Score=32.27 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHH
Q 019575 280 SSLAITPVVSVIVFHDKVNGVKVIAMLMA 308 (339)
Q Consensus 280 ~~~pv~~ilavi~f~e~~t~~k~ig~~l~ 308 (339)
.....+.+.++++|||++|+.|.+|+.++
T Consensus 65 ~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 65 LGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33356678999999999999999998874
No 95
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=76.91 E-value=6.6 Score=38.70 Aligned_cols=67 Identities=12% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 83 VLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 83 ~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
++|- ....++|..|.-.+++-+.++=.+.+.+..+++-.++-++++|+..++|-+..+.|-+++...
T Consensus 325 ligt--vvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 325 LIGT--VVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHH--HHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 4566 777799999999999999999999999999999999999999999999999999998876543
No 96
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.72 E-value=18 Score=34.30 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=82.2
Q ss_pred ccchhhHHHHHhhhhhhh-hhhHHHh----hccCCCchhHHHHHHHhhHHHHHHHHhhccCCCC-CCCCCCCch-hHHHH
Q 019575 6 FSSCGYKSLNSMAGQAAA-VILGRYY----YDQGGNSKWLATLVQTAAFPILYIPLFLLPASQE-VSSSSRYPS-FVTLA 78 (339)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~-~ll~r~y----~~~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~-~~~~~~~~~-~~~l~ 78 (339)
|+.-| .+|+.|.-.+ -.+++.+ -.+++.+-=|....-..|+|.++.|+.+.----+ -......|. +--..
T Consensus 187 F~~~G---v~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 187 FNLIG---VMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred cceee---HHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHH
Confidence 55555 3444444433 4555554 3346666566667778999999999887310000 011111222 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 019575 79 LVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 79 ~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~ 149 (339)
.+-.+.|. ++.+..+--. +---+.++..+.+..=..|.++|++++.+++|-...-+..+...|+.+=.
T Consensus 264 ~~~s~~gy-lG~~~VLalI--~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ 331 (367)
T KOG1582|consen 264 FLFSLAGY-LGIVFVLALI--KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNM 331 (367)
T ss_pred HHHHHHhH-hhHHHHHHHH--HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhc
Confidence 22222333 2223222212 22456667888888999999999999999999999999999999987743
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.46 E-value=4.2 Score=38.93 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=61.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 019575 69 SRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAAL 147 (339)
Q Consensus 69 ~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~l 147 (339)
...|...+..+.+..+|. ..++..| +-++---+-+.+.+..+.=+|++++|.+..+.++++.||.++.+.+.|..+
T Consensus 235 ~~hp~~~~Di~l~s~~ga--vGQ~FI~-~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 235 KEHPDVAFDILLYSTCGA--VGQLFIF-YTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HcChhHHHHHHHHHHhhh--hhhheeh-hhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 445665555666666887 7776666 666667777899999999999999999999999999999999998888765
No 98
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=75.84 E-value=1.8 Score=40.34 Aligned_cols=103 Identities=14% Similarity=0.099 Sum_probs=72.5
Q ss_pred hhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHH
Q 019575 38 KWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAF 117 (339)
Q Consensus 38 ~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~f 117 (339)
-|-.-+=|-.|+.+..+.+-..+. +++.. |-...-...|+.-+..|+.+..+-+..-++|.=-+.|+..+.
T Consensus 178 g~saiLPqAiGMv~~ali~~~~~~--------~~~~~-K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgVii 248 (288)
T COG4975 178 GLSAILPQAIGMVIGALILGFFKM--------EKRFN-KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVII 248 (288)
T ss_pred chhhhhHHHHHHHHHHHHHhhccc--------ccchH-HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeee
Confidence 455666788888887665544221 11111 222233447898899998888888888888888888999999
Q ss_pred HHHHHHHHhccccchHHHH----HHHHHHHHHHHHh
Q 019575 118 NAVFSYFINSQKFTALILN----SVVILSLSAALIA 149 (339)
Q Consensus 118 talfs~~~lkek~t~~~i~----slvl~~~G~~ll~ 149 (339)
+.+-..+++|||=|++++. |+++..+|+++++
T Consensus 249 sTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 249 STIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred eecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 9999999999999998864 5555555555554
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.05 E-value=0.24 Score=47.48 Aligned_cols=114 Identities=13% Similarity=0.297 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c---ccchhhHHHHHHHHHHHHHHHHHHHHhccccchhchhhhc
Q 019575 163 WKYILGFISTVGASAIYSLLLSLMQLSFQKVLK---R---QSFGVVLDMQIYTSFVATCICIVGLFASGEWRTLSGEMQG 236 (339)
Q Consensus 163 ~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~---~---~~~~~~le~~~~~~l~a~~~~~vg~~~~~~~~~l~~~~~~ 236 (339)
++...|.++++.+++..+....+-++..+|... | ..+.-..|...|.++ +.+.+|
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~---ltm~vG---------------- 77 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGM---LTMIVG---------------- 77 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHH---HHHHHH----------------
Confidence 446899999999999999988886666666432 0 111222443344332 222222
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Q 019575 237 FGKGKVSYVMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI 316 (339)
Q Consensus 237 f~~g~~~~~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~ 316 (339)
.+.++..+..+-.-++. =...+..+.+.++|..+++|+++..-.+|+++++.|....+
T Consensus 78 --------------ei~NFaAYaFAPasLVt--------PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 78 --------------EIANFAAYAFAPASLVT--------PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred --------------hHhhHHHHhhchHhhhc--------cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 11222211111001111 11224446668999999999999999999999998776664
Q ss_pred h
Q 019575 317 Y 317 (339)
Q Consensus 317 y 317 (339)
.
T Consensus 136 ~ 136 (335)
T KOG2922|consen 136 I 136 (335)
T ss_pred E
Confidence 4
No 100
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=74.48 E-value=21 Score=32.98 Aligned_cols=126 Identities=18% Similarity=0.112 Sum_probs=80.5
Q ss_pred hhhHHHhhccCCCchh-HHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 019575 24 VILGRYYYDQGGNSKW-LATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALVYLVLGAILAGDNMLYSVGLLYL 102 (339)
Q Consensus 24 ~ll~r~y~~~gg~~~w-~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~l~~~~l~yl 102 (339)
.|.+|.--+..+.+.. .-..-.....|+++..=++.- ...+.+........-+..-+..|+......++-.|-++-+
T Consensus 171 VL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~e--dws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVt 248 (309)
T COG5070 171 VLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFE--DWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVT 248 (309)
T ss_pred HHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhc--cCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeeh
Confidence 5666665555443332 334456678888876544432 1111111111111112222335665455556667778889
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 103 SASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 103 p~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
+..+++++.+.+-.--++-+.+++.|+.++.++.++.+.++..++-+.+
T Consensus 249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYava 297 (309)
T COG5070 249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVA 297 (309)
T ss_pred hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999999999988887776543
No 101
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=73.46 E-value=12 Score=35.07 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 019575 299 GVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 299 ~~k~ig~~l~l~G~~~y~y 317 (339)
+...+|.++++.|...|..
T Consensus 116 ~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHHHHHHHHHHHHHHheee
Confidence 4688999999988888755
No 102
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=71.69 E-value=8.3 Score=32.15 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 270 SSLFSNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 270 ssl~~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
+++.++....+.+|+..++...+.+..+......+.+..+.|+..++.
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~ 112 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFL 112 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677787765555555555555565666666655655544
No 103
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=70.90 E-value=1.1e+02 Score=29.99 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=86.5
Q ss_pred hHHHHHhhhhhhhhhhHHHhhcc----CCCchhHHHHHH-HhhHHHHHHHHhhccCCCCCCCC-CCCchhHHHHHHHHHH
Q 019575 11 YKSLNSMAGQAAAVILGRYYYDQ----GGNSKWLATLVQ-TAAFPILYIPLFLLPASQEVSSS-SRYPSFVTLALVYLVL 84 (339)
Q Consensus 11 ~~~~~~~~g~~~~~ll~r~y~~~----gg~~~w~~t~~~-~~g~p~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 84 (339)
++.+..++++|..+-++-.||++ ++.+.|++.... +.|.++.++-....-. .+.... ...-..+..++. .+
T Consensus 182 ~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~~~gff~G~s~~vw~v--Vl 258 (345)
T KOG2234|consen 182 FLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG-EAINEYGFFYGYSSIVWLV--VL 258 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCccccccHHHHHH--HH
Confidence 45677788899999999999996 556688887654 4555555544443211 111100 000111111111 11
Q ss_pred HHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 85 GAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 85 G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
. .+.+-++-+.=.+|.|--.-.--.+...+++++.|+.+.+.++|..=.+|..+.+.++.+-...
T Consensus 259 ~--~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~ 323 (345)
T KOG2234|consen 259 L--NAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLY 323 (345)
T ss_pred H--HhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcC
Confidence 1 1334355555667777766666667789999999999999999999999999888888776533
No 104
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=68.73 E-value=53 Score=27.74 Aligned_cols=77 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhhhcceeeeechhhHHHHHHHHHH-HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhcccccc
Q 019575 245 VMVIVWTAVSWQVCSVGVVGLIYVVSSLFSNVISTSSLA-ITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQNYLDD 323 (339)
Q Consensus 245 ~~~lv~~~v~~q~~~~gv~gl~~~~ssl~~~vv~~~~~p-v~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~~ 323 (339)
.++++.+.++|.+ |=.-+-...++..+++.....-- +.++.+..+.++..+.....-..-++.|++=|++++|.++
T Consensus 35 ~~sl~ltvvaY~i---GDl~ILPr~gN~~AtiaD~~La~~~iW~~~~~~~~~~~~~~~~allsA~~i~v~E~fFH~yl~~ 111 (136)
T PF10710_consen 35 LISLVLTVVAYLI---GDLFILPRTGNIVATIADFGLAFLVIWLMGYILTGNYVSIAWAALLSAVLIGVGEYFFHRYLLR 111 (136)
T ss_pred HHHHHHHHHHHHH---HHHheeeCCCChhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666643 32222233466667777666544 4578888888855554322222224567888988887554
Q ss_pred h
Q 019575 324 Y 324 (339)
Q Consensus 324 ~ 324 (339)
+
T Consensus 112 ~ 112 (136)
T PF10710_consen 112 N 112 (136)
T ss_pred c
Confidence 3
No 105
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=67.23 E-value=75 Score=26.67 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 019575 169 FISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIVGLFASGE 226 (339)
Q Consensus 169 ~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~vg~~~~~~ 226 (339)
.++++.+.+.-+++..+..+..|+.. + +.+-.+.....+++...+-.+..++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g--s----~~~as~i~~~~G~i~~~i~~~~~~~ 54 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG--S----PLVASFISFGVGFILLLIILLITGR 54 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--c----cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778888888888777777766642 1 2455555555666666655555444
No 106
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=59.86 E-value=4.9 Score=36.31 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 275 NVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 275 ~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
+-++.+-...+-++++++++|++...|+.+.++++.|+....|.
T Consensus 83 sai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 83 SAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred HHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 33444555677899999999999999999999999888776653
No 107
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=56.35 E-value=46 Score=29.95 Aligned_cols=47 Identities=6% Similarity=0.121 Sum_probs=27.1
Q ss_pred HhCCcchhHHHHHHHHHHHHHHHHHhcccccchhccccCCCCCCCCC
Q 019575 292 VFHDKVNGVKVIAMLMAIWGFASYIYQNYLDDYRSRKSRYDGETRND 338 (339)
Q Consensus 292 ~f~e~~t~~k~ig~~l~l~G~~~y~y~~~~~~~~~~~~~~~~~~~~~ 338 (339)
+||=.++..++.|.++.+.-..-.+.++..+++.++++++++++..|
T Consensus 64 ~fgIsl~af~IaGGiiL~~ia~~ml~~~~~~~~~~~~~~~~~~~~~~ 110 (203)
T PF01914_consen 64 FFGISLPAFRIAGGIILFLIALEMLFGSPSSEKSSPDEKEEAKDAED 110 (203)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhhhhccccc
Confidence 77888889999998887754444455444442223333333344444
No 108
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.96 E-value=40 Score=32.52 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 019575 77 LALVYLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAV 150 (339)
Q Consensus 77 l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~ 150 (339)
...++-++|+ +.+ +.-.+-.+..|+-|.++.-.-+..-+.+-..++.++++++..+.|+.+.++|.++-..
T Consensus 230 ~~~lScv~gf--~is-y~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 230 VMLLSCVMGF--GIS-YTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHH--HHH-HHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 3445455666 555 4444888889999999999889999999999999999999999999999999887643
No 109
>PHA03049 IMV membrane protein; Provisional
Probab=52.00 E-value=19 Score=26.45 Aligned_cols=18 Identities=28% Similarity=0.683 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH-Hhcc
Q 019575 302 VIAMLMAIWGFASY-IYQN 319 (339)
Q Consensus 302 ~ig~~l~l~G~~~y-~y~~ 319 (339)
.++...++.|...| +|++
T Consensus 7 l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 45666677777777 5653
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=50.40 E-value=34 Score=27.70 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q 019575 279 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWG 311 (339)
Q Consensus 279 ~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G 311 (339)
.+.+.+...+++++++|++++....|.++.+.+
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~a 102 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGA 102 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 333345568899999999999999999998744
No 111
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=49.87 E-value=2.5e+02 Score=27.10 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=17.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHh
Q 019575 127 SQKFTALILNSVVILSLSAALIA 149 (339)
Q Consensus 127 kek~t~~~i~slvl~~~G~~ll~ 149 (339)
++.+.+.-+.++.++++|+.+..
T Consensus 129 g~eL~~~~~~Al~~alv~I~iYV 151 (305)
T COG0341 129 GKELARQGLLALLLALVGILIYV 151 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777888888888887764
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.96 E-value=66 Score=25.76 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q 019575 274 SNVISTSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGF 312 (339)
Q Consensus 274 ~~vv~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~ 312 (339)
+..-..+.+.+...++++.++|++.+....|..++..|.
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav 110 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAV 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 433344444566789999999999999999998887544
No 113
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=47.33 E-value=24 Score=28.54 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHH
Q 019575 117 FNAVFSYFINSQKFTALILNSVVILSLSA 145 (339)
Q Consensus 117 ftalfs~~~lkek~t~~~i~slvl~~~G~ 145 (339)
.-+.||.+++||++++.+..|-+....++
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 34678999999999999999988775554
No 114
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=45.26 E-value=8 Score=26.13 Aligned_cols=9 Identities=33% Similarity=0.349 Sum_probs=4.3
Q ss_pred HHHhccccc
Q 019575 314 SYIYQNYLD 322 (339)
Q Consensus 314 ~y~y~~~~~ 322 (339)
.-+|+.-++
T Consensus 23 l~IyQkikq 31 (49)
T PF11044_consen 23 LSIYQKIKQ 31 (49)
T ss_pred HHHHHHHHH
Confidence 335665433
No 115
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=44.82 E-value=32 Score=32.04 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=61.1
Q ss_pred HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 111 CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSF 190 (339)
Q Consensus 111 ~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~ 190 (339)
...+.++..+|-+.=-||| +...+..+.+..+|+.++......+ +..++...+|.+++...-..||-=+..++
T Consensus 76 ~~ie~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~lG~vc~~~nI~~~~sPL~~m~--- 148 (243)
T KOG1623|consen 76 LVIETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFH---DPERRVSVLGIVCAVFNISMFAAPLSVIR--- 148 (243)
T ss_pred HHHHHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcC---CcceeeeeeehhhhhhhHHhhhccHHhhh---
Confidence 4456677777777777777 5555556666666665543221111 11123467999999999999998666644
Q ss_pred HHhhccc-cchhhHHHHHHHHHHHHHHHHHHHHhc
Q 019575 191 QKVLKRQ-SFGVVLDMQIYTSFVATCICIVGLFAS 224 (339)
Q Consensus 191 ~k~~~~~-~~~~~le~~~~~~l~a~~~~~vg~~~~ 224 (339)
|++|+. .-..++-+++..-+.+..-++.|.+..
T Consensus 149 -~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~ 182 (243)
T KOG1623|consen 149 -KVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIK 182 (243)
T ss_pred -hheecCceeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 444322 222334445555555555666666663
No 116
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=44.48 E-value=2.3e+02 Score=25.25 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=31.4
Q ss_pred CchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCC---------chhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 019575 36 NSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRY---------PSFVTLALVYLVLGAILAGDNMLYSVGLLY 101 (339)
Q Consensus 36 ~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~G~~~~~~~~l~~~~l~y 101 (339)
++.|.....-..|--++..-.+..+++.+.+++... ....+.+..+...|+....+-..|.-+...
T Consensus 64 ~~~~~~~~~l~lGv~ll~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~ 138 (214)
T PF11139_consen 64 PSPVVGWLQLVLGVLLLLLAVRVWRRRPRPDPPSRPPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAI 138 (214)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCchhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 556666666666766666666655443121111111 113345555454555444444556444443
No 117
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=42.21 E-value=27 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.446 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 019575 301 KVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~ 319 (339)
=.+|+++.++|...+++++
T Consensus 6 Fl~~l~lliig~~~~v~~~ 24 (92)
T PF13038_consen 6 FLVGLILLIIGGFLFVFQS 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3678888888888887763
No 118
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.28 E-value=66 Score=25.77 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.3
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 119 AVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 119 alfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
..||.+.+||++++.++.+-.+...|+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 468999999999999999887776665543
No 119
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=38.91 E-value=45 Score=24.67 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH-Hhcc
Q 019575 301 KVIAMLMAIWGFASY-IYQN 319 (339)
Q Consensus 301 k~ig~~l~l~G~~~y-~y~~ 319 (339)
-+++...++.|...| +|++
T Consensus 6 iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 346666777777777 5543
No 120
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.59 E-value=59 Score=27.96 Aligned_cols=14 Identities=0% Similarity=0.012 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHH
Q 019575 273 FSNVISTSSLAITP 286 (339)
Q Consensus 273 ~~~vv~~~~~pv~~ 286 (339)
+++-...+.+|+..
T Consensus 75 lkaa~lvYllPLl~ 88 (154)
T PRK10862 75 LRSALLVYMTPLVG 88 (154)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445556443
No 121
>PRK02237 hypothetical protein; Provisional
Probab=38.53 E-value=98 Score=25.14 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 019575 107 YSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 152 (339)
Q Consensus 107 ~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~ 152 (339)
++---....+.+.+....+-++|.+++-++|..++.+|+.++.+.+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4444445667777888999999999999999999999998886553
No 122
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=37.21 E-value=74 Score=27.24 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.3
Q ss_pred HHHHhCCcchh
Q 019575 289 SVIVFHDKVNG 299 (339)
Q Consensus 289 avi~f~e~~t~ 299 (339)
..++++|.+..
T Consensus 97 ~~L~~~e~~~~ 107 (150)
T COG3086 97 QYLFFSELIVI 107 (150)
T ss_pred HHHhhhhHHHH
Confidence 44455555443
No 123
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=37.19 E-value=1.7e+02 Score=29.30 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=37.1
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019575 119 AVFSYFINSQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVL 194 (339)
Q Consensus 119 alfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~ 194 (339)
.+.-+++-|=++..|.+..+++..+|..++++.+. . .-.++|+. .|++..|+ +|.++-.+.
T Consensus 77 l~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~------v--~~~l~Gv~---las~ssg~----GE~tfL~lt 137 (402)
T PF02487_consen 77 LIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS------V--WVRLLGVV---LASLSSGL----GEVTFLSLT 137 (402)
T ss_pred HHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc------h--hHHHHHHH---HHhhhhhh----hHHHHHHHH
Confidence 44555666677788888888888888888765421 1 11344444 45555555 666655543
No 124
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=37.13 E-value=1.5e+02 Score=25.78 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Q 019575 136 NSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATC 215 (339)
Q Consensus 136 ~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~ 215 (339)
.+++.++.|.=++.++.--|+ ..++++-.+|-.+.+.|-+..+. +-..|--+.+..--..-+.+.+|--+.|+.
T Consensus 93 lAVV~AIFGLElLmvSQvcEd--~~SrrKWamGs~LlLvsfvlSs~----GllsFviLL~~~vtl~GFTL~fWCeFtAsF 166 (184)
T PF15108_consen 93 LAVVVAIFGLELLMVSQVCED--AHSRRKWAMGSVLLLVSFVLSSG----GLLSFVILLRNQVTLIGFTLMFWCEFTASF 166 (184)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chhhhhhhhhhHHHHHHHHHhcc----cHHHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 456666777655544432211 23345677899999988887766 222233332222222345677888777776
Q ss_pred HHHH
Q 019575 216 ICIV 219 (339)
Q Consensus 216 ~~~v 219 (339)
.+..
T Consensus 167 LfFL 170 (184)
T PF15108_consen 167 LFFL 170 (184)
T ss_pred HHHH
Confidence 5554
No 125
>PRK02935 hypothetical protein; Provisional
Probab=35.07 E-value=52 Score=26.59 Aligned_cols=55 Identities=11% Similarity=0.191 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 019575 127 SQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSL 181 (339)
Q Consensus 127 kek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~al 181 (339)
.-|+++.+-.|+.+.++|..+...+-.-.++.-.-.--.++|+++.++|.+.|--
T Consensus 6 ssKINkiRt~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFW 60 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998876433110000000011235677777777665544
No 126
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=33.64 E-value=50 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q 019575 280 SSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFA 313 (339)
Q Consensus 280 ~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~ 313 (339)
+....+.+.+.++.+|..+....+|+++++.|+.
T Consensus 77 l~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 77 LAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 3334556777777777778889999999998864
No 127
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=33.60 E-value=4e+02 Score=24.89 Aligned_cols=111 Identities=21% Similarity=0.166 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHh-HHHHHHHHHHH-Hh---ccc--cchHHHHHHHHHHHHHHHHhc-cCC
Q 019575 82 LVLGAILAGDNMLYSVGLLYLSASTYSLICAS-QLAFNAVFSYF-IN---SQK--FTALILNSVVILSLSAALIAV-NEG 153 (339)
Q Consensus 82 ~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s-~~~ftalfs~~-~l---kek--~t~~~i~slvl~~~G~~ll~~-~~~ 153 (339)
.+.|.+-+..|.+-...++.+-.+...++-.+ +.+..=.-+.+ ++ +|. -.+..++|+++..+|.++... ++.
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 33566666666655566666666666666555 44433333333 22 222 345677888888888877643 111
Q ss_pred C-------CC-C----------C------Ccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 154 S-------EG-P----------S------KVS-------KWKYILGFISTVGASAIYSLLLSLMQLSFQK 192 (339)
Q Consensus 154 ~-------~~-~----------~------~~~-------~~~~~~G~~l~l~Aa~~~aly~~l~e~~~~k 192 (339)
. ++ + + +.+ .++.++|..+++.++++||.-++=.+...++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 139 EKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 0 00 0 0 001 1257899999999999999975554444444
No 128
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.56 E-value=3.2e+02 Score=23.47 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHH
Q 019575 165 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFGVVLDMQIYTSFVATCICIV 219 (339)
Q Consensus 165 ~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~~~le~~~~~~l~a~~~~~v 219 (339)
..+..++++.|.+.-..+-.+....-|.. + .++--.+....+++..+.+
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-~-----spl~As~isf~vGt~~L~~ 51 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYL-G-----SPLLASLISFLVGTVLLLI 51 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666655554443 1 1244444555566666664
No 129
>PRK11111 hypothetical protein; Provisional
Probab=31.25 E-value=2e+02 Score=26.07 Aligned_cols=19 Identities=5% Similarity=0.296 Sum_probs=15.2
Q ss_pred HhCCcchhHHHHHHHHHHH
Q 019575 292 VFHDKVNGVKVIAMLMAIW 310 (339)
Q Consensus 292 ~f~e~~t~~k~ig~~l~l~ 310 (339)
+||=.++..++.|.++.+.
T Consensus 70 ~fGIsl~afrIaGGiiL~~ 88 (214)
T PRK11111 70 LFGISIDSFRIAGGILVVT 88 (214)
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 6788888899998877763
No 130
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.14 E-value=80 Score=25.82 Aligned_cols=56 Identities=11% Similarity=0.212 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHH
Q 019575 127 SQKFTALILNSVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSLL 182 (339)
Q Consensus 127 kek~t~~~i~slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly 182 (339)
+-|+++.+-.|+.+.++|.+++..+-.-....-.-.--.++|++.++++++.|...
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwI 60 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWI 60 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45889999999999999988764321100000000112456777777777666553
No 131
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=30.95 E-value=1.3e+02 Score=24.38 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 019575 109 LICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 152 (339)
Q Consensus 109 ll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~ 152 (339)
.--....+.+.+....+-|+|.+++-++|..++.+|+.++.+.+
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 33344566677778888899999999999999999999886653
No 132
>KOG4783 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.65 E-value=1.8e+02 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhccccc-chhccccC
Q 019575 301 KVIAMLMAIWGFASYIYQNYLD-DYRSRKSR 330 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~~~~-~~~~~~~~ 330 (339)
.+.+.+.+=.-.+.|+|..+.. ++++|+.+
T Consensus 70 aI~aVVavHvalglyiy~A~~~~sr~~ke~K 100 (102)
T KOG4783|consen 70 AICAVVAVHVALGLYIYRAIYAKSRTAKEAK 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCccccccc
Confidence 3444444444457777776544 44444443
No 133
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=30.20 E-value=37 Score=30.65 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=10.6
Q ss_pred ccccchhccccCCCCCCCCC
Q 019575 319 NYLDDYRSRKSRYDGETRND 338 (339)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~ 338 (339)
.++++++|+++++.++|+|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~ 200 (201)
T PRK14766 181 LYIKSKIKTKKEKIENEQNN 200 (201)
T ss_pred HhcchhhhhhhHHhhccccC
Confidence 44455555555555566665
No 134
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=30.20 E-value=6.2e+02 Score=25.95 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=28.4
Q ss_pred HHHHHHhccccchHHHH--HHHHHHHHHHHHhccCCCCCCCCcchhhhHHHHHHHHHHHHHHHH
Q 019575 120 VFSYFINSQKFTALILN--SVVILSLSAALIAVNEGSEGPSKVSKWKYILGFISTVGASAIYSL 181 (339)
Q Consensus 120 lfs~~~lkek~t~~~i~--slvl~~~G~~ll~~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~al 181 (339)
+..+-.+.+|+.+++.. +.++..+|-+++-+-+. .+..+.++..+.+.+..+.
T Consensus 289 ~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~---------~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 289 LILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA---------GSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred HHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC---------cchHHHHHHHHHHHHHhhc
Confidence 56667788888888865 34444444444433321 1144555554555555444
No 135
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.02 E-value=49 Score=31.58 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 019575 34 GGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYP-----SFVTLALVYLVLGAILAGDNMLYSVGLLYLSASTYS 108 (339)
Q Consensus 34 gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~G~~~~~~~~l~~~~l~ylp~st~s 108 (339)
-|+..|.-|+.+..=--+|++|+....-.-+ +..+.| .++-+..++.++|+ +.+ +.-.+-++.++|-|+.
T Consensus 211 v~~~iw~lt~ynnv~a~lLflpll~lnge~~--~v~~~~~l~a~~Fw~~mtLsglfgF--~mg-yvTg~QIK~TSplThn 285 (347)
T KOG1442|consen 211 VGDCIWRLTAYNNVNALLLFLPLLILNGEFQ--AVVGFPHLPAIKFWILMTLSGLFGF--AMG-YVTGWQIKVTSPLTHN 285 (347)
T ss_pred ccCeehhhHHHHHHHHHHHHHHHHHHcchHH--HHcCcccchHHHHHHHHHHHHHHHH--Hhh-heeeEEEEecccceee
Confidence 6799999999999988888888887421111 111111 23334444444555 222 3333556678999999
Q ss_pred HHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 109 LICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 109 ll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
+=.+.+-+--.++++.+++|.-+...|-|.++...|...-
T Consensus 286 ISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~Y 325 (347)
T KOG1442|consen 286 ISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAY 325 (347)
T ss_pred ecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHH
Confidence 9999999999999999999988887777777666666543
No 136
>PRK10734 putative calcium/sodium:proton antiporter; Provisional
Probab=29.27 E-value=1.1e+02 Score=29.56 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHhcc
Q 019575 291 IVFHDKVNGVKVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 291 i~f~e~~t~~k~ig~~l~l~G~~~y~y~~ 319 (339)
+..+++++....+-+++.......|.++.
T Consensus 118 ~~~~~~l~~~~g~~ll~~~~~yl~~~~~~ 146 (325)
T PRK10734 118 VLYDGQLSRSDGIFLLLLAVLWLLFIVKI 146 (325)
T ss_pred HHHCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777666555555543344444433
No 137
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=26.04 E-value=85 Score=23.30 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcccccchhc
Q 019575 305 MLMAIWGFASYIYQNYLDDYRS 326 (339)
Q Consensus 305 ~~l~l~G~~~y~y~~~~~~~~~ 326 (339)
+++.+.++.+..|-+-++||++
T Consensus 42 i~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhhH
Confidence 4445555555555544445443
No 138
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=25.69 E-value=1.3e+02 Score=20.64 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=7.7
Q ss_pred ccccCCCCCCCCC
Q 019575 326 SRKSRYDGETRND 338 (339)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (339)
.|+=++.-|||.|
T Consensus 34 Sk~LrDPFeeHeD 46 (46)
T PRK13183 34 SKELDDPFDDHED 46 (46)
T ss_pred ccccCCchhhcCC
Confidence 4455555677765
No 139
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.15 E-value=1.1e+02 Score=24.21 Aligned_cols=11 Identities=9% Similarity=0.157 Sum_probs=4.3
Q ss_pred ccCCCCCCCCC
Q 019575 328 KSRYDGETRND 338 (339)
Q Consensus 328 ~~~~~~~~~~~ 338 (339)
++++++++..|
T Consensus 32 ~~~~~~~~v~~ 42 (95)
T PF07172_consen 32 EKEEEENEVQD 42 (95)
T ss_pred cccccCCCCCc
Confidence 33333344443
No 140
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.06 E-value=88 Score=31.92 Aligned_cols=30 Identities=7% Similarity=-0.083 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccchhc
Q 019575 297 VNGVKVIAMLMAIWGFASYIYQNYLDDYRS 326 (339)
Q Consensus 297 ~t~~k~ig~~l~l~G~~~y~y~~~~~~~~~ 326 (339)
++..|++++++++.|+..+++.+..++++.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~~~~~~~ 283 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPKGREAPG 283 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 788999999999999988887665444443
No 141
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=24.84 E-value=5.5e+02 Score=23.57 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhccccchhchhhhccccchhHHHH--HHHHHHHHHHHHH-hhhcceeeeechhhHHHHH
Q 019575 203 LDMQIYTSFV-ATCICIVGLFASGEWRTLSGEMQGFGKGKVSYVM--VIVWTAVSWQVCS-VGVVGLIYVVSSLFSNVIS 278 (339)
Q Consensus 203 le~~~~~~l~-a~~~~~vg~~~~~~~~~l~~~~~~f~~g~~~~~~--~lv~~~v~~q~~~-~gv~gl~~~~ssl~~~vv~ 278 (339)
.+...+.+.. |......|..-.++|+.-.++ .-.+..+.... +.+.+++...... ....++..+.-.+..+.+.
T Consensus 64 ~~yg~~~h~imal~li~~Gi~ti~~W~~~~~~--~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if 141 (224)
T PF09930_consen 64 LRYGMVIHLIMALLLIYAGIYTIKKWKKSGKD--SSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIF 141 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHcccCCC--CcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 3444444443 334444566555566422222 11122222222 3455555444322 2233443333333333333
Q ss_pred HHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH----hcccccchhccccC
Q 019575 279 TSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYI----YQNYLDDYRSRKSR 330 (339)
Q Consensus 279 ~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~----y~~~~~~~~~~~~~ 330 (339)
.... ...+.++-..+.+.....|-.+.+.|...-. .-+|.+.++.+..+
T Consensus 142 ~i~i---l~ss~i~r~~~~~~p~~LG~~Mi~~GlyfLl~aliiPn~~~~~~~~~~~ 194 (224)
T PF09930_consen 142 FILI---LLSSFIFRRLKKPYPIILGNFMIFLGLYFLLSALIIPNYIQAKQMPMSP 194 (224)
T ss_pred HHHH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCCCC
Confidence 3332 2222333345555666889999998773221 22455555543333
No 142
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.16 E-value=1.2e+02 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 019575 169 FISTVGASAIYSLLLSLMQLSFQKVLKRQSF 199 (339)
Q Consensus 169 ~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~ 199 (339)
+++++..++.-|+|+ +++.++|.+++++.
T Consensus 3 iilali~G~~~Gff~--ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 3 IILALIVGAVIGFFI--ARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHCCC
Confidence 344444444444433 77999998887765
No 143
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=23.51 E-value=84 Score=23.08 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 019575 77 LALVYLVLGAILAGDNMLYSVGLLYLSA 104 (339)
Q Consensus 77 l~~~~~~~G~~~~~~~~l~~~~l~ylp~ 104 (339)
.+.+++++|..+..| .+|..++.|+++
T Consensus 30 WIgvgaL~G~~vlFN-il~~laL~yL~p 56 (65)
T PF08370_consen 30 WIGVGALLGFIVLFN-ILFTLALTYLNP 56 (65)
T ss_pred eehHHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 566777888866666 888899999886
No 144
>COG4711 Predicted membrane protein [Function unknown]
Probab=23.31 E-value=4.4e+02 Score=23.95 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=22.3
Q ss_pred HHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 122 SYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 122 s~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
-...+..|+|+++.+++++.+++..-.
T Consensus 113 EvwllA~~isp~h~lal~~~~l~I~y~ 139 (217)
T COG4711 113 EVWLLAYRISPYHSLALVLVVLVIMYS 139 (217)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 356788999999999999998887543
No 145
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=22.21 E-value=7.4e+02 Score=24.16 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=46.7
Q ss_pred HhhccCChhHHHHHHHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 019575 97 VGLLYLSASTYSLICASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALI 148 (339)
Q Consensus 97 ~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll 148 (339)
.=+..++.-+.++..--+-+-+.+++..+++++++...|.|+.+...|+.+=
T Consensus 262 lLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 262 LLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred heeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3345688889999999999999999999999999999999999999998775
No 146
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=21.82 E-value=95 Score=30.64 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=8.0
Q ss_pred HHHHHHHHHH
Q 019575 300 VKVIAMLMAI 309 (339)
Q Consensus 300 ~k~ig~~l~l 309 (339)
.|.+|.++++
T Consensus 340 gKL~~Gi~Ai 349 (372)
T PRK15086 340 GKLIGGITAI 349 (372)
T ss_pred HHHHHHHHHH
Confidence 4788888887
No 147
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=21.61 E-value=5.1e+02 Score=24.82 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------cchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 019575 165 YILGFISTVGASAIYSLLLSLMQLSFQKVLKRQ------SFGVVLDMQIYTSFVATCICIVGLFASGE 226 (339)
Q Consensus 165 ~~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~------~~~~~le~~~~~~l~a~~~~~vg~~~~~~ 226 (339)
--+|+..+++=+++--+-+ .-.+|.++++ -+..-..+|.|-.++-....+++.+.+-|
T Consensus 47 g~vGI~fav~f~i~lvltL----vnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~ID 110 (296)
T PF10361_consen 47 GSVGIAFAVLFAIALVLTL----VNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSID 110 (296)
T ss_pred chhHHHHHHHHHHHHHHHH----HHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeee
Confidence 3456655544333333333 3344543321 12344678998887766666666655444
No 148
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.59 E-value=2.3e+02 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q 019575 166 ILGFISTVGASAIYSLLLSLMQLSFQKVLKRQSFG 200 (339)
Q Consensus 166 ~~G~~l~l~Aa~~~aly~~l~e~~~~k~~~~~~~~ 200 (339)
++++.+++++++.-|+ .+.++.++|.+|+++..
T Consensus 7 il~ivl~ll~G~~~G~--fiark~~~k~lk~NPpi 39 (71)
T COG3763 7 ILLIVLALLAGLIGGF--FIARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhCCCC
Confidence 4566666666666664 34678889988877654
No 149
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.36 E-value=5.2e+02 Score=21.72 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhccC-----CCCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 019575 110 ICASQLAFNAVFSYFINSQ-KFTALILNSVVILSLSAALIAVNE-----GSEGPSKVSKWKYILGFISTVGASAIYSLLL 183 (339)
Q Consensus 110 l~~s~~~ftalfs~~~lke-k~t~~~i~slvl~~~G~~ll~~~~-----~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~ 183 (339)
+......++....++++|+ |-.++..++. ..++++.+..+. -.++| ..+.+..-+++-.+.+++.+--|+
T Consensus 62 ~~~~~~~~~l~~~~lffkr~~~~P~~~I~~--ll~~v~~~~l~~~~~~~~~~~~--~~d~~~i~~l~~~li~a~IwipYf 137 (149)
T PF10754_consen 62 INIAMWLFTLWLLYLFFKRKRRFPKLYIIW--LLISVLFIALDAFAFSYIFPSP--VIDAEAIRELLRSLIAAAIWIPYF 137 (149)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHHHHHHHHhcccc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777666 4445554432 333333222221 00011 112335678888899999999988
Q ss_pred HHHHHH
Q 019575 184 SLMQLS 189 (339)
Q Consensus 184 ~l~e~~ 189 (339)
...+++
T Consensus 138 ~~S~RV 143 (149)
T PF10754_consen 138 LRSKRV 143 (149)
T ss_pred HHhHHh
Confidence 885554
Done!