Query 019575
Match_columns 339
No_of_seqs 202 out of 457
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.3 5E-06 1.7E-10 66.6 9.7 64 88-151 40-104 (110)
2 2i68_A Protein EMRE; transmemb 98.2 3.4E-06 1.1E-10 70.3 7.5 65 88-152 40-105 (137)
3 2i68_A Protein EMRE; transmemb 96.9 0.0027 9.3E-08 52.6 7.7 41 278-318 64-104 (137)
4 3b5d_A Multidrug transporter E 95.0 0.24 8.1E-06 39.0 10.5 40 278-317 64-103 (110)
5 3hd6_A Ammonium transporter RH 74.6 51 0.0017 32.5 13.7 177 2-189 87-275 (490)
6 3l1l_A Arginine/agmatine antip 33.7 49 0.0017 31.0 5.3 20 301-320 410-429 (445)
7 2zxe_G FXYD10, phospholemman-l 22.1 54 0.0018 23.6 2.4 20 301-320 24-43 (74)
8 2jo1_A Phospholemman; FXYD1, N 13.5 1.3E+02 0.0043 21.5 2.6 19 301-319 21-39 (72)
9 2jp3_A FXYD domain-containing 9.1 1.7E+02 0.006 20.6 2.1 19 301-319 22-40 (67)
10 3o7q_A L-fucose-proton symport 9.0 9.6E+02 0.033 21.1 18.1 27 10-36 156-183 (438)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=5e-06 Score=66.61 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhccCChhHHHHH-HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 019575 88 LAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVN 151 (339)
Q Consensus 88 ~~~~~~l~~~~l~ylp~st~sll-~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~ 151 (339)
++....++..+++++|.|++.-+ ....++++++.+++++|||+|+.|+.|+++..+|++++...
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 36666888899999999999887 89999999999999999999999999999999999998654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.19 E-value=3.4e-06 Score=70.34 Aligned_cols=65 Identities=11% Similarity=0.175 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhccCChhHHHHH-HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 019575 88 LAGDNMLYSVGLLYLSASTYSLI-CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAALIAVNE 152 (339)
Q Consensus 88 ~~~~~~l~~~~l~ylp~st~sll-~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ll~~~~ 152 (339)
++...++|..+++++|++.+..+ ....|++++++++++++|++|+.++.|+++.++|++++...+
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46666899999999999988777 899999999999999999999999999999999999986543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.89 E-value=0.0027 Score=52.59 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhc
Q 019575 278 STSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIYQ 318 (339)
Q Consensus 278 ~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y~ 318 (339)
..+.+.++.++++++|||++++.+++|+++++.|+......
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34453355799999999999999999999999998877553
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.04 E-value=0.24 Score=38.98 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHh
Q 019575 278 STSSLAITPVVSVIVFHDKVNGVKVIAMLMAIWGFASYIY 317 (339)
Q Consensus 278 ~~~~~pv~~ilavi~f~e~~t~~k~ig~~l~l~G~~~y~y 317 (339)
....+..+.++++++|||++|+.|++|..+++.|+.....
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445345679999999999999999999999988877543
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=74.58 E-value=51 Score=32.48 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=98.2
Q ss_pred ccccccchhhHHHHHhhhhhhhhhhHHHhhc-cCCCchhHHHHHHHhhHHHHHHHHhhccCCCCCCCCCCCchhHHHHHH
Q 019575 2 ARASFSSCGYKSLNSMAGQAAAVILGRYYYD-QGGNSKWLATLVQTAAFPILYIPLFLLPASQEVSSSSRYPSFVTLALV 80 (339)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~~ll~r~y~~-~gg~~~w~~t~~~~~g~p~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (339)
-|-+||+.|+|.+....+---+.|+-.++.. ++|+-+-...+...+-|...-..+..= ...+ |-.....++.
T Consensus 87 kryg~ssv~~n~l~~a~~~Qwa~l~~g~~~~~~~g~ip~~~~~~fq~~Faa~t~~IvsG----Avae---R~k~~~~li~ 159 (490)
T 3hd6_A 87 QRYGFSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENLINADFCVASVCVAFG----AVLG---KVSPIQLLIM 159 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTTBEECCHHHHHHHHHHHHHHHHHHH----HHTT---SSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHHHHHHHHHHHHHHHHHH----HHHh---cccHHHHHHH
Confidence 4889999999998888886677777777544 566544444444444444433222210 0011 1112223333
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHhHHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHHH-----h
Q 019575 81 YLVLGAILAGDNMLYSVGLLYLSASTYSLICASQLAFNAVFSYFINSQKF------TALILNSVVILSLSAALI-----A 149 (339)
Q Consensus 81 ~~~~G~~~~~~~~l~~~~l~ylp~st~sll~~s~~~ftalfs~~~lkek~------t~~~i~slvl~~~G~~ll-----~ 149 (339)
.++..+.+..+...+...+.++|.+=.+++|...=.+....+.++-|++. ....--++.+.++|..++ +
T Consensus 160 ~~l~~~vY~~~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfG 239 (490)
T 3hd6_A 160 TFFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPS 239 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 33345555555555544667899998999998888887777766654310 111235677888888876 3
Q ss_pred ccCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019575 150 VNEGSEGPSKVSKWKYILGFISTVGASAIYSLLLSLMQLS 189 (339)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~G~~l~l~Aa~~~aly~~l~e~~ 189 (339)
+++.+. . ++.....-++=+..|++..++-..+.++.
T Consensus 240 FN~gs~---~-~~~~~~~a~~NT~lAaAag~lt~~~~s~l 275 (490)
T 3hd6_A 240 FNSAIS---Y-HGDSQHRAAINTYCSLAACVLTSVAISSA 275 (490)
T ss_dssp HTTTTC---S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhhh---c-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343221 1 01112233445555555555544444443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.70 E-value=49 Score=30.98 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 019575 301 KVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~~ 320 (339)
...+.++.+.|+..|.+.++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45677778888888877543
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.10 E-value=54 Score=23.65 Aligned_cols=20 Identities=10% Similarity=0.287 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 019575 301 KVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~~ 320 (339)
.+++.++.+.|+...+-++-
T Consensus 24 LifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC-
T ss_pred chhHHHHHHHHHHHHHcCcc
Confidence 34556666666666665543
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.51 E-value=1.3e+02 Score=21.51 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 019575 301 KVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~ 319 (339)
.+++.++.+.|+...+-++
T Consensus 21 LifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCc
Confidence 3455555666666555543
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=9.14 E-value=1.7e+02 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.231 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 019575 301 KVIAMLMAIWGFASYIYQN 319 (339)
Q Consensus 301 k~ig~~l~l~G~~~y~y~~ 319 (339)
.+++.++.+.|+...+-++
T Consensus 22 LifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTH
T ss_pred hhhHHHHHHHHHHHHHcCc
Confidence 3455566666666655543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=8.95 E-value=9.6e+02 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=18.2
Q ss_pred hhHHHHHhhhhhhhhhhHHHhh-ccCCC
Q 019575 10 GYKSLNSMAGQAAAVILGRYYY-DQGGN 36 (339)
Q Consensus 10 ~~~~~~~~~g~~~~~ll~r~y~-~~gg~ 36 (339)
|+.....-+|...+|++..... +++++
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4556666778888888877766 55443
Done!