Query 019575
Match_columns 339
No_of_seqs 202 out of 457
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 03:54:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 30.1 1.2E+02 0.0088 23.9 10.6 41 273-313 82-125 (222)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 12.3 43 0.0032 23.0 1.7 29 308-337 31-59 (91)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 11.3 1.1E+02 0.0083 15.8 2.9 16 166-181 2-17 (27)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 92 0.0067 21.4 1.2 16 305-320 39-54 (100)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.1 2.3E+02 0.017 21.6 3.4 29 287-315 81-109 (199)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.1 8.1E+02 0.059 19.2 6.6 36 111-146 31-66 (248)
7 d1y5ic1 f.21.3.1 (C:1-225) Res 3.5 1.4E+02 0.01 23.6 0.7 21 302-322 95-115 (225)
8 d1xmea1 f.24.1.1 (A:14-562) Ba 3.5 1.1E+02 0.0081 28.0 0.0 22 299-320 455-476 (549)
9 d1gyta1 c.50.1.1 (A:1-178) Leu 3.4 2.9E+02 0.021 20.0 2.6 24 302-325 125-148 (178)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.0 2.5E+02 0.018 19.3 1.6 14 307-320 47-60 (107)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=30.15 E-value=1.2e+02 Score=23.86 Aligned_cols=41 Identities=7% Similarity=-0.141 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHH---HHHHHHhCCcchhHHHHHHHHHHHHHH
Q 019575 273 FSNVISTSSLAITP---VVSVIVFHDKVNGVKVIAMLMAIWGFA 313 (339)
Q Consensus 273 ~~~vv~~~~~pv~~---ilavi~f~e~~t~~k~ig~~l~l~G~~ 313 (339)
...++....+|++. +.+..+.+.+++....+|+++.+....
T Consensus 82 ~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 82 SIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp SHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 34444444556553 556667889999988888887654333
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.27 E-value=43 Score=23.02 Aligned_cols=29 Identities=7% Similarity=-0.137 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcccccchhccccCCCCCCCC
Q 019575 308 AIWGFASYIYQNYLDDYRSRKSRYDGETRN 337 (339)
Q Consensus 308 ~l~G~~~y~y~~~~~~~~~~~~~~~~~~~~ 337 (339)
.+.|...|..-+|.+.| .+++.+++.+||
T Consensus 31 ~V~~~~~~~~~ryR~~~-~~~~~~~~~~~n 59 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN-KDAKYSPNWSHS 59 (91)
T ss_dssp HHHHHHHTTTTTTTTST-TTCSSCCCCCCC
T ss_pred HHHHHHHhhheeeeccC-CccCCCCcccCC
Confidence 34445555554554332 333333444454
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.32 E-value=1.1e+02 Score=15.78 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 019575 166 ILGFISTVGASAIYSL 181 (339)
Q Consensus 166 ~~G~~l~l~Aa~~~al 181 (339)
.+|.+.+-.+++.|+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4688888888888888
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.92 E-value=92 Score=21.45 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhccc
Q 019575 305 MLMAIWGFASYIYQNY 320 (339)
Q Consensus 305 ~~l~l~G~~~y~y~~~ 320 (339)
..+.+.|...|..-+|
T Consensus 39 I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 39 ITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3344555556644444
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.06 E-value=2.3e+02 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=19.8
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHHHHHHH
Q 019575 287 VVSVIVFHDKVNGVKVIAMLMAIWGFASY 315 (339)
Q Consensus 287 ilavi~f~e~~t~~k~ig~~l~l~G~~~y 315 (339)
.....+++.+++....++..+.+....-|
T Consensus 81 ~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 81 FAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 33445678888888877777776655555
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.14 E-value=8.1e+02 Score=19.19 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 019575 111 CASQLAFNAVFSYFINSQKFTALILNSVVILSLSAA 146 (339)
Q Consensus 111 ~~s~~~ftalfs~~~lkek~t~~~i~slvl~~~G~~ 146 (339)
...-++.+++..++++.+|.-++|++-=.+.+..+.
T Consensus 31 a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 31 AITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 345567777888889999999998876555554443
No 7
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=3.54 E-value=1.4e+02 Score=23.59 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 019575 302 VIAMLMAIWGFASYIYQNYLD 322 (339)
Q Consensus 302 ~ig~~l~l~G~~~y~y~~~~~ 322 (339)
.++.++++.|....+++++.+
T Consensus 95 ~i~g~l~liG~~~ll~RR~~~ 115 (225)
T d1y5ic1 95 GASGVLCLIGGVLLLKRRLFS 115 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666544
No 8
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=3.45 E-value=1.1e+02 Score=28.00 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccc
Q 019575 299 GVKVIAMLMAIWGFASYIYQNY 320 (339)
Q Consensus 299 ~~k~ig~~l~l~G~~~y~y~~~ 320 (339)
....+|..+...|...++|+-+
T Consensus 455 ~~~~igg~i~~~g~l~f~~nl~ 476 (549)
T d1xmea1 455 VFNVLAGIVLLVALLLFIYGLF 476 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999988643
No 9
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]}
Probab=3.39 E-value=2.9e+02 Score=19.98 Aligned_cols=24 Identities=4% Similarity=0.002 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhcccccchh
Q 019575 302 VIAMLMAIWGFASYIYQNYLDDYR 325 (339)
Q Consensus 302 ~ig~~l~l~G~~~y~y~~~~~~~~ 325 (339)
.+..+.--+....|-|.+|+.+++
T Consensus 125 ~~~~~~~g~~l~~Y~f~~yKskk~ 148 (178)
T d1gyta1 125 KVRQAVETAKETLYSFDQLKTNKS 148 (178)
T ss_dssp HHHHHHHHHHHHHCCCCTTCSSCC
T ss_pred HHHHHHHHHHhcCccccceecCCC
Confidence 333333333457888878865543
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.98 E-value=2.5e+02 Score=19.27 Aligned_cols=14 Identities=0% Similarity=-0.045 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhccc
Q 019575 307 MAIWGFASYIYQNY 320 (339)
Q Consensus 307 l~l~G~~~y~y~~~ 320 (339)
+.+.|...|..-+|
T Consensus 47 ~~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 47 IFVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhh
Confidence 33444555544344
Done!