BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019576
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 32/334 (9%)
Query: 3 KDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT 62
+DV+ VD H DGTLK ++ K+ K Y+ ++ +V LK G+ F++TNS + Y+
Sbjct: 158 QDVQYCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSK 217
Query: 63 IVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNT 122
+++++ S LD G W F+ VIT + KP FF+++ R V PE+G N
Sbjct: 218 LLLDYAL-SPFLDKG----EHWQGLFEFVITLANKPRFFYDNLR--FLSVNPENGTXTNV 270
Query: 123 DNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDIL 182
G I PG ++QGG+ + L + ++LY+GDHIYGDIL
Sbjct: 271 H--------GPIVPG-----------VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDIL 310
Query: 183 RSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGI 242
R KK WRT E I+ ++ L + I
Sbjct: 311 RLKKDCNWRTA----LVVEELGEEIASQIRALPIEKKIGEAXAIKKELEQKYVDLCTRSI 366
Query: 243 DVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVER 302
D Q + + DL+ Q L +E + ++ W ++ + G + S FA+QV+R
Sbjct: 367 DESSQ-QYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDR 425
Query: 303 FACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 336
FAC+Y ++S+L +SP Y+R + + H+ +I
Sbjct: 426 FACIYXEKLSDLLEHSPXTYFRANRRLLAHDIDI 459
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 32/334 (9%)
Query: 3 KDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT 62
+DV+ VD H DGTLK ++ K+ K Y+ ++ +V LK G+ F++TNS + Y+
Sbjct: 158 QDVQYCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSK 217
Query: 63 IVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNT 122
+++++ S LD G W F+ VIT + KP FF+++ R V PE+G + N
Sbjct: 218 LLLDYAL-SPFLDKG----EHWQGLFEFVITLANKPRFFYDNLR--FLSVNPENGTMTNV 270
Query: 123 DNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDIL 182
G I PG ++QGG+ + L + ++LY+GDHIYGDIL
Sbjct: 271 H--------GPIVPG-----------VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDIL 310
Query: 183 RSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGI 242
R KK WRT E I+ ++ L + I
Sbjct: 311 RLKKDCNWRT----ALVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSI 366
Query: 243 DVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVER 302
D Q + + DL+ Q L +E + ++ W ++ + G + S FA+QV+R
Sbjct: 367 DESSQ-QYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDR 425
Query: 303 FACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 336
FAC+Y ++S+L +SP Y+R + + H+ +I
Sbjct: 426 FACIYMEKLSDLLEHSPMTYFRANRRLLAHDIDI 459
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 46/335 (13%)
Query: 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 60
M++DVR AVD H G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + Y
Sbjct: 216 MFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKY 274
Query: 61 TTIVMNFLCG-SHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGML 119
T +M +L H G + + W YFD+++ + KP FF E L QV+ ++G L
Sbjct: 275 TDKIMTYLFDFPHGPKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL 331
Query: 120 LNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYG 179
GT G + G+ ++ GGS + LL + +LY+GDHI+G
Sbjct: 332 ---KIGT---YTGPLQHGI----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFG 374
Query: 180 DILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKS 239
DIL+SKK GWRT ++ + +++ L L
Sbjct: 375 DILKSKKRQGWRTF--------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAE 420
Query: 240 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQ 299
+D R D QR +++H C + + G L ++G + + FA Q
Sbjct: 421 LYKHLDSSSN--ERPDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQ 472
Query: 300 VERFACLYTSQVSNLSLYSPDKY-YRPSEGFMPHE 333
V R+A LY + NL LY P Y +R + MPHE
Sbjct: 473 VMRYADLYAASFINL-LYYPFSYLFRAAHVLMPHE 506
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 46/335 (13%)
Query: 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 60
M++DVR AVD H G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + Y
Sbjct: 215 MFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKY 273
Query: 61 TTIVMNFLCG-SHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGML 119
T +M +L H G + + W YFD+++ + KP FF E L QV+ ++G L
Sbjct: 274 TDKIMTYLFDFPHGPKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL 330
Query: 120 LNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYG 179
GT G + G+ ++ GGS + LL + +LY+GDHI+G
Sbjct: 331 ---KIGT---YTGPLQHGI----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFG 373
Query: 180 DILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKS 239
DIL+SKK GWRT ++ + +++ L L
Sbjct: 374 DILKSKKRQGWRTF--------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAE 419
Query: 240 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQ 299
+D R D QR +++H C + + G L ++G + + FA Q
Sbjct: 420 LYKHLDSSSN--ERPDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQ 471
Query: 300 VERFACLYTSQVSNLSLYSPDKY-YRPSEGFMPHE 333
V R+A LY + NL LY P Y +R + MPHE
Sbjct: 472 VMRYADLYAASFINL-LYYPFSYLFRAAHVLMPHE 505
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 46/335 (13%)
Query: 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 60
M++DVR AVD H G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + Y
Sbjct: 216 MFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKY 274
Query: 61 TTIVMNFLCG-SHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGML 119
T +M +L H G + + W YFD+++ + KP FF E L QV+ ++G L
Sbjct: 275 TDKIMTYLFDFPHGPKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL 331
Query: 120 LNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYG 179
GT G + G+ ++ GGS + LL + +LY+GDHI+G
Sbjct: 332 ---KIGT---YTGPLQHGI----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFG 374
Query: 180 DILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKS 239
DIL+SKK GWRT ++ + +++ L L
Sbjct: 375 DILKSKKRQGWRTF--------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAE 420
Query: 240 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQ 299
+D R D QR +++H C + + G L ++G + + FA Q
Sbjct: 421 LYKHLDSSSN--ERPDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQ 472
Query: 300 VERFACLYTSQVSNLSLYSPDKY-YRPSEGFMPHE 333
V R+A LY + NL LY P Y +R + MPHE
Sbjct: 473 VMRYADLYAASFINL-LYYPFSYLFRAAHVLMPHE 506
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 46/335 (13%)
Query: 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 60
M++DVR AVD H G+LK+ ++ + Y+ +D + +L ++E G+ FL TNS + Y
Sbjct: 216 MFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKY 274
Query: 61 TTIVMNFLCG-SHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGML 119
T +M +L H G + + W YFD+++ + KP FF E L QV+ ++G L
Sbjct: 275 TDKIMTYLFDFPHGPKPG-SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL 331
Query: 120 LNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYG 179
GT G + G+ ++ GGS + LL + +LY+GDHI+G
Sbjct: 332 ---KIGT---YTGPLQHGI----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFG 374
Query: 180 DILRSKKVLGWRTMXXXXXXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKS 239
DIL+SKK GWRT ++ + +++ L L
Sbjct: 375 DILKSKKRQGWRTF--------------LVIPELAQELHVWTDKSSLFEELQSLDIFLAE 420
Query: 240 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQ 299
+D R D QR +++H C + + G L ++G + + FA Q
Sbjct: 421 LYKHLDSSSN--ERPDISSIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQ 472
Query: 300 VERFACLYTSQVSNLSLYSPDKY-YRPSEGFMPHE 333
V R+A LY + NL LY P Y +R + MPHE
Sbjct: 473 VMRYADLYAASFINL-LYYPFSYLFRAAHVLMPHE 506
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 65 MNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE---PESGMLLN 121
+ L G TLDG + D +FD TG PGFF + + E ESG+ N
Sbjct: 478 LGTLSGIGTLDGFRHRHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGSESGIFTN 537
Query: 122 T 122
T
Sbjct: 538 T 538
>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
Length = 235
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 132 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191
GD+S + E ++F GG + + + + + + VGD IY DI ++ K + +
Sbjct: 172 GDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVKIK 231
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 302 RFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEIIP 338
R A +Y S +S+ + +KY++ S F+P +I P
Sbjct: 72 RIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAP 108
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 128 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 167
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 128 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 167
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 302 RFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEIIP 338
R A +Y S +S+ + +KY++ S F+P +I P
Sbjct: 72 RIAAIYKHYASAISVLTDEKYFQGSFNFLPIVSQIAP 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,085,113
Number of Sequences: 62578
Number of extensions: 396919
Number of successful extensions: 871
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 837
Number of HSP's gapped (non-prelim): 18
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)