Query 019576
Match_columns 339
No_of_seqs 127 out of 263
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 5E-101 1E-105 773.2 18.9 294 1-336 153-446 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 4.8E-85 1E-89 627.2 16.6 283 1-336 212-494 (510)
3 KOG2469 IMP-GMP specific 5'-nu 100.0 1.2E-64 2.6E-69 494.8 15.1 257 1-309 168-424 (424)
4 TIGR02244 HAD-IG-Ncltidse HAD 100.0 1.7E-57 3.6E-62 444.2 16.0 189 1-215 154-342 (343)
5 TIGR02253 CTE7 HAD superfamily 98.6 1.2E-07 2.7E-12 85.6 7.5 109 26-198 89-197 (221)
6 TIGR01509 HAD-SF-IA-v3 haloaci 98.3 3.1E-06 6.6E-11 73.6 9.4 100 30-195 84-183 (183)
7 PF13419 HAD_2: Haloacid dehal 98.3 1.5E-06 3.3E-11 73.8 7.2 104 27-195 73-176 (176)
8 TIGR01428 HAD_type_II 2-haloal 98.3 1.9E-06 4E-11 77.0 7.6 103 31-198 92-194 (198)
9 PRK13226 phosphoglycolate phos 98.2 9.3E-06 2E-10 74.9 9.0 104 28-196 92-195 (229)
10 PLN02770 haloacid dehalogenase 98.1 8.6E-06 1.9E-10 76.2 8.3 102 30-196 107-208 (248)
11 PRK09456 ?-D-glucose-1-phospha 98.1 3.4E-06 7.4E-11 75.8 5.4 104 30-197 83-186 (199)
12 TIGR01454 AHBA_synth_RP 3-amin 98.1 4.8E-06 1E-10 74.9 6.2 103 29-196 73-175 (205)
13 PRK09449 dUMP phosphatase; Pro 98.1 7.1E-06 1.5E-10 74.5 6.7 104 30-197 94-197 (224)
14 TIGR01449 PGP_bact 2-phosphogl 98.1 1.7E-05 3.7E-10 71.1 8.8 104 28-196 82-185 (213)
15 PLN03243 haloacid dehalogenase 98.1 1.2E-05 2.7E-10 76.3 8.0 100 32-196 110-209 (260)
16 TIGR02252 DREG-2 REG-2-like, H 98.0 7.4E-06 1.6E-10 73.3 5.6 97 33-194 107-203 (203)
17 PRK14988 GMP/IMP nucleotidase; 98.0 6.8E-06 1.5E-10 75.9 5.5 104 30-198 92-195 (224)
18 TIGR01662 HAD-SF-IIIA HAD-supe 98.0 1.9E-05 4E-10 66.3 7.2 103 27-197 21-132 (132)
19 PRK13288 pyrophosphatase PpaX; 97.9 3.8E-05 8.2E-10 69.5 8.6 104 30-198 81-184 (214)
20 cd01427 HAD_like Haloacid deha 97.9 2.6E-05 5.5E-10 63.0 6.7 117 30-195 23-139 (139)
21 TIGR01422 phosphonatase phosph 97.9 2.4E-05 5.1E-10 72.9 6.9 104 30-197 98-202 (253)
22 TIGR02247 HAD-1A3-hyp Epoxide 97.9 1.9E-05 4.2E-10 71.2 5.9 100 31-197 94-197 (211)
23 TIGR01990 bPGM beta-phosphoglu 97.9 1.3E-05 2.7E-10 70.3 4.3 97 32-195 88-184 (185)
24 TIGR03351 PhnX-like phosphonat 97.9 2.3E-05 5E-10 71.0 5.9 105 32-199 88-194 (220)
25 PRK10826 2-deoxyglucose-6-phos 97.9 5.4E-05 1.2E-09 69.0 8.2 102 32-198 93-194 (222)
26 PRK13225 phosphoglycolate phos 97.8 3.7E-05 8E-10 73.6 7.0 102 30-199 141-242 (273)
27 PLN02779 haloacid dehalogenase 97.8 3.5E-05 7.5E-10 74.0 6.8 104 31-197 144-247 (286)
28 TIGR02254 YjjG/YfnB HAD superf 97.8 3.9E-05 8.5E-10 69.1 6.8 103 31-198 97-200 (224)
29 COG2179 Predicted hydrolase of 97.8 3E-05 6.4E-10 69.6 5.3 96 33-201 48-143 (175)
30 PLN02575 haloacid dehalogenase 97.7 5.1E-05 1.1E-09 76.2 6.5 102 32-198 217-318 (381)
31 TIGR01691 enolase-ppase 2,3-di 97.7 4.2E-05 9E-10 71.3 5.4 103 31-199 95-199 (220)
32 TIGR02009 PGMB-YQAB-SF beta-ph 97.7 9.1E-05 2E-09 64.8 6.9 99 30-195 87-185 (185)
33 TIGR01993 Pyr-5-nucltdase pyri 97.7 5.1E-05 1.1E-09 67.1 5.2 102 30-195 83-184 (184)
34 COG1011 Predicted hydrolase (H 97.7 0.00011 2.4E-09 66.4 7.3 106 30-200 98-203 (229)
35 TIGR01685 MDP-1 magnesium-depe 97.6 8.8E-05 1.9E-09 66.8 5.9 110 33-198 47-159 (174)
36 TIGR01668 YqeG_hyp_ppase HAD s 97.6 0.0001 2.2E-09 65.4 6.3 42 157-200 99-140 (170)
37 PLN02811 hydrolase 97.6 0.00015 3.2E-09 66.3 7.4 103 33-197 80-185 (220)
38 PLN02940 riboflavin kinase 97.6 0.00011 2.5E-09 73.4 7.2 101 32-196 94-194 (382)
39 PRK13223 phosphoglycolate phos 97.6 0.00023 5E-09 67.8 8.9 102 31-197 101-202 (272)
40 PRK13222 phosphoglycolate phos 97.6 0.00037 7.9E-09 62.9 9.4 103 30-197 92-194 (226)
41 PRK13478 phosphonoacetaldehyde 97.5 0.00038 8.2E-09 65.6 8.9 104 30-197 100-204 (267)
42 PRK11587 putative phosphatase; 97.5 0.00028 6E-09 64.3 7.5 101 31-197 83-183 (218)
43 TIGR01261 hisB_Nterm histidino 97.5 0.00019 4.2E-09 63.6 5.9 107 29-197 27-148 (161)
44 PRK10748 flavin mononucleotide 97.4 0.00013 2.8E-09 67.8 4.3 99 30-198 112-210 (238)
45 PRK06769 hypothetical protein; 97.4 0.00024 5.2E-09 63.2 5.4 41 156-199 100-140 (173)
46 PRK10725 fructose-1-P/6-phosph 97.3 0.00032 7E-09 61.7 4.8 95 36-196 92-186 (188)
47 TIGR01549 HAD-SF-IA-v1 haloaci 97.3 0.00062 1.3E-08 58.1 6.2 47 33-94 66-112 (154)
48 PRK08942 D,D-heptose 1,7-bisph 97.2 0.00098 2.1E-08 59.2 7.2 37 158-197 112-148 (181)
49 KOG3085 Predicted hydrolase (H 97.2 0.00028 6E-09 66.7 3.2 99 28-196 111-213 (237)
50 PRK06698 bifunctional 5'-methy 97.2 0.0014 3E-08 66.8 8.5 98 32-197 331-428 (459)
51 TIGR01656 Histidinol-ppas hist 97.2 0.0021 4.6E-08 55.3 8.4 38 156-196 108-145 (147)
52 PRK10563 6-phosphogluconate ph 97.1 0.0011 2.4E-08 60.1 6.6 101 28-196 85-186 (221)
53 COG0546 Gph Predicted phosphat 97.0 0.0026 5.7E-08 58.4 8.0 103 30-197 88-190 (220)
54 TIGR00213 GmhB_yaeD D,D-heptos 97.0 0.0026 5.7E-08 56.3 7.4 26 33-58 28-53 (176)
55 TIGR01548 HAD-SF-IA-hyp1 haloa 96.9 0.0026 5.5E-08 57.0 6.8 45 37-95 112-156 (197)
56 TIGR01664 DNA-3'-Pase DNA 3'-p 96.4 0.0088 1.9E-07 53.1 6.6 34 25-58 36-69 (166)
57 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.3 0.00067 1.4E-08 64.1 -1.1 38 159-198 189-226 (257)
58 PLN02919 haloacid dehalogenase 96.1 0.012 2.5E-07 66.4 7.2 102 33-199 163-265 (1057)
59 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.0 0.029 6.3E-07 49.5 7.7 39 30-68 79-117 (201)
60 PHA02597 30.2 hypothetical pro 95.9 0.012 2.6E-07 52.4 5.1 102 29-198 72-176 (197)
61 PRK05446 imidazole glycerol-ph 95.9 0.029 6.3E-07 56.0 8.2 110 30-197 29-149 (354)
62 PRK09552 mtnX 2-hydroxy-3-keto 95.9 0.067 1.5E-06 48.8 9.8 51 19-69 62-112 (219)
63 PLN02954 phosphoserine phospha 95.8 0.08 1.7E-06 47.9 10.1 37 32-68 85-121 (224)
64 COG0647 NagD Predicted sugar p 95.8 0.043 9.3E-07 52.9 8.4 32 167-199 207-238 (269)
65 TIGR00338 serB phosphoserine p 95.7 0.04 8.6E-07 49.8 7.7 41 28-68 82-122 (219)
66 TIGR01452 PGP_euk phosphoglyco 95.6 0.0019 4.1E-08 61.5 -1.4 38 158-197 211-248 (279)
67 TIGR01681 HAD-SF-IIIC HAD-supe 95.2 0.016 3.4E-07 49.1 2.9 58 34-98 32-90 (128)
68 TIGR01686 FkbH FkbH-like domai 95.0 0.04 8.7E-07 53.7 5.6 69 13-94 9-84 (320)
69 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.9 0.005 1.1E-07 57.3 -1.0 38 158-196 204-241 (242)
70 TIGR03333 salvage_mtnX 2-hydro 94.8 0.26 5.6E-06 44.9 10.1 61 6-68 47-107 (214)
71 PF09419 PGP_phosphatase: Mito 94.8 0.14 3E-06 46.1 8.1 29 166-195 135-163 (168)
72 TIGR01684 viral_ppase viral ph 94.6 0.079 1.7E-06 51.8 6.2 56 31-100 146-201 (301)
73 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.5 0.12 2.6E-06 45.9 6.9 55 14-68 64-124 (202)
74 TIGR01493 HAD-SF-IA-v2 Haloaci 94.1 0.029 6.2E-07 48.8 2.0 41 32-93 91-131 (175)
75 PHA03398 viral phosphatase sup 94.0 0.12 2.7E-06 50.6 6.2 54 31-98 148-201 (303)
76 PF13242 Hydrolase_like: HAD-h 93.9 0.05 1.1E-06 41.6 2.7 43 156-200 11-53 (75)
77 PF00702 Hydrolase: haloacid d 93.7 0.072 1.6E-06 47.1 3.9 35 34-68 130-164 (215)
78 TIGR02726 phenyl_P_delta pheny 93.6 0.047 1E-06 48.9 2.4 58 8-68 13-71 (169)
79 TIGR01489 DKMTPPase-SF 2,3-dik 93.5 0.28 6.1E-06 42.6 7.1 51 30-94 71-121 (188)
80 smart00577 CPDc catalytic doma 92.8 0.3 6.4E-06 42.2 6.1 53 29-95 43-95 (148)
81 KOG3109 Haloacid dehalogenase- 92.6 0.32 7E-06 45.9 6.3 115 25-199 94-208 (244)
82 TIGR01459 HAD-SF-IIA-hyp4 HAD- 91.5 0.32 7E-06 45.2 5.2 51 33-95 26-77 (242)
83 PRK11009 aphA acid phosphatase 91.5 0.62 1.3E-05 44.1 7.1 66 18-95 101-170 (237)
84 TIGR01672 AphA HAD superfamily 91.2 0.63 1.4E-05 44.0 6.8 64 17-94 100-167 (237)
85 PF06888 Put_Phosphatase: Puta 91.1 2.3 5.1E-05 40.2 10.5 80 6-103 47-128 (234)
86 TIGR01457 HAD-SF-IIA-hyp2 HAD- 90.7 0.19 4E-06 47.3 2.7 37 160-198 189-225 (249)
87 TIGR02250 FCP1_euk FCP1-like p 90.5 0.67 1.4E-05 40.9 5.9 43 25-68 52-94 (156)
88 PHA02530 pseT polynucleotide k 88.9 0.37 8.1E-06 45.8 3.3 56 33-101 189-244 (300)
89 TIGR01456 CECR5 HAD-superfamil 88.9 0.23 5.1E-06 48.5 1.9 29 168-197 264-292 (321)
90 PRK11590 hypothetical protein; 88.7 2.3 5E-05 38.7 8.2 38 31-68 95-133 (211)
91 PTZ00445 p36-lilke protein; Pr 88.3 1.2 2.6E-05 41.9 6.0 140 10-197 55-206 (219)
92 TIGR02251 HIF-SF_euk Dullard-l 87.8 1.2 2.6E-05 39.3 5.6 55 25-93 36-90 (162)
93 PLN02645 phosphoglycolate phos 87.8 0.37 7.9E-06 46.8 2.5 36 160-197 241-276 (311)
94 PRK11133 serB phosphoserine ph 87.4 1.8 4E-05 42.6 7.2 39 30-68 180-218 (322)
95 PF13344 Hydrolase_6: Haloacid 87.1 1 2.3E-05 36.7 4.4 36 33-68 16-51 (101)
96 PRK09484 3-deoxy-D-manno-octul 86.9 0.51 1.1E-05 42.2 2.8 31 38-68 55-85 (183)
97 TIGR01460 HAD-SF-IIA Haloacid 86.3 0.51 1.1E-05 43.9 2.5 36 159-196 198-234 (236)
98 TIGR01488 HAD-SF-IB Haloacid D 86.1 1.5 3.3E-05 37.7 5.2 49 20-68 61-110 (177)
99 TIGR01663 PNK-3'Pase polynucle 86.0 1.6 3.6E-05 45.9 6.2 36 23-58 189-224 (526)
100 PRK10444 UMP phosphatase; Prov 84.7 0.72 1.6E-05 43.6 2.7 37 159-197 184-220 (248)
101 PF05152 DUF705: Protein of un 82.8 2.8 6E-05 41.0 5.8 59 31-103 142-200 (297)
102 PRK08238 hypothetical protein; 79.4 3.6 7.8E-05 42.8 5.7 35 34-68 75-109 (479)
103 PRK13582 thrH phosphoserine ph 78.8 5.9 0.00013 35.1 6.2 39 29-68 66-104 (205)
104 COG0731 Fe-S oxidoreductases [ 78.2 2 4.4E-05 42.1 3.3 26 33-58 94-120 (296)
105 COG0637 Predicted phosphatase/ 77.4 2.9 6.3E-05 38.6 3.9 100 33-197 88-187 (221)
106 PLN02645 phosphoglycolate phos 76.6 3.9 8.4E-05 39.7 4.7 35 34-68 47-81 (311)
107 PF08645 PNK3P: Polynucleotide 75.4 2.8 6E-05 37.0 3.1 34 23-56 21-54 (159)
108 TIGR01670 YrbI-phosphatas 3-de 72.4 2.4 5.2E-05 36.8 1.9 30 39-68 36-65 (154)
109 TIGR01458 HAD-SF-IIA-hyp3 HAD- 66.6 7.8 0.00017 36.5 4.2 36 33-68 23-58 (257)
110 TIGR03752 conj_TIGR03752 integ 64.5 40 0.00087 35.2 9.1 76 196-280 68-144 (472)
111 smart00775 LNS2 LNS2 domain. T 63.2 10 0.00022 33.3 4.0 37 33-69 29-65 (157)
112 TIGR01457 HAD-SF-IIA-hyp2 HAD- 62.9 12 0.00026 35.1 4.7 22 34-55 20-41 (249)
113 PF12710 HAD: haloacid dehalog 62.6 9.3 0.0002 33.1 3.7 35 34-68 92-126 (192)
114 TIGR02137 HSK-PSP phosphoserin 62.3 13 0.00028 34.0 4.7 37 31-68 68-104 (203)
115 COG4359 Uncharacterized conser 59.4 1.3E+02 0.0027 28.2 10.3 59 9-70 54-112 (220)
116 PF03031 NIF: NLI interacting 59.2 18 0.0004 30.9 4.9 42 27-69 32-73 (159)
117 TIGR01689 EcbF-BcbF capsule bi 58.5 25 0.00054 30.2 5.4 74 14-103 8-98 (126)
118 PRK10444 UMP phosphatase; Prov 57.9 14 0.0003 34.9 4.2 36 33-68 19-54 (248)
119 PRK10884 SH3 domain-containing 56.7 84 0.0018 29.2 9.0 14 194-207 93-106 (206)
120 PF10146 zf-C4H2: Zinc finger- 56.6 1E+02 0.0022 29.2 9.7 23 252-274 81-103 (230)
121 TIGR01675 plant-AP plant acid 55.7 16 0.00035 34.5 4.1 38 33-70 119-159 (229)
122 TIGR01545 YfhB_g-proteo haloac 55.6 18 0.0004 33.1 4.5 37 32-68 95-132 (210)
123 COG0560 SerB Phosphoserine pho 55.0 23 0.0005 32.7 5.1 50 19-68 65-114 (212)
124 TIGR01533 lipo_e_P4 5'-nucleot 54.7 34 0.00074 33.0 6.3 36 33-68 120-155 (266)
125 PF15290 Syntaphilin: Golgi-lo 50.8 74 0.0016 31.2 7.8 44 224-275 104-147 (305)
126 KOG2882 p-Nitrophenyl phosphat 49.9 15 0.00033 36.2 3.1 59 146-205 217-278 (306)
127 TIGR01544 HAD-SF-IE haloacid d 48.7 47 0.001 32.3 6.3 39 30-68 120-158 (277)
128 COG4850 Uncharacterized conser 46.9 31 0.00066 34.7 4.6 61 34-95 199-260 (373)
129 KOG2961 Predicted hydrolase (H 45.7 16 0.00034 33.1 2.2 47 152-199 121-170 (190)
130 PF13304 AAA_21: AAA domain; P 45.0 7.2 0.00016 33.7 0.0 37 22-58 262-300 (303)
131 PF12325 TMF_TATA_bd: TATA ele 44.8 2E+02 0.0043 24.6 8.7 46 189-234 11-57 (120)
132 KOG2914 Predicted haloacid-hal 44.6 26 0.00057 32.9 3.7 118 18-197 76-197 (222)
133 TIGR01512 ATPase-IB2_Cd heavy 43.0 26 0.00057 36.7 3.8 35 34-68 365-400 (536)
134 PF11019 DUF2608: Protein of u 43.0 66 0.0014 30.6 6.2 48 23-70 73-120 (252)
135 PF15342 FAM212: FAM212 family 42.9 10 0.00022 28.6 0.5 23 161-183 31-53 (62)
136 COG1907 Predicted archaeal sug 42.8 66 0.0014 31.8 6.2 43 264-306 246-288 (312)
137 TIGR01525 ATPase-IB_hvy heavy 42.5 30 0.00064 36.4 4.1 35 34-68 387-422 (556)
138 TIGR01452 PGP_euk phosphoglyco 41.8 28 0.0006 33.0 3.5 25 33-57 20-44 (279)
139 PF14723 SSFA2_C: Sperm-specif 41.5 2.1E+02 0.0045 26.2 8.7 33 241-277 138-170 (179)
140 COG5610 Predicted hydrolase (H 41.3 75 0.0016 33.5 6.6 44 158-203 166-209 (635)
141 COG0561 Cof Predicted hydrolas 40.9 33 0.00072 31.8 3.8 36 34-69 23-58 (264)
142 COG0036 Rpe Pentose-5-phosphat 40.8 46 0.001 31.4 4.7 63 22-102 69-146 (220)
143 PF09802 Sec66: Preprotein tra 40.3 1.4E+02 0.0029 27.7 7.5 59 172-231 41-104 (190)
144 PF00038 Filament: Intermediat 40.0 3E+02 0.0064 26.3 10.3 63 212-280 228-290 (312)
145 PF08654 DASH_Dad2: DASH compl 39.9 66 0.0014 26.8 5.0 44 254-305 30-73 (103)
146 PRK03669 mannosyl-3-phosphogly 38.5 45 0.00097 31.3 4.3 48 14-68 14-61 (271)
147 TIGR01484 HAD-SF-IIB HAD-super 37.9 39 0.00085 29.9 3.6 36 32-67 18-53 (204)
148 PF10146 zf-C4H2: Zinc finger- 36.9 3.3E+02 0.0071 25.8 9.7 23 250-272 65-87 (230)
149 TIGR01460 HAD-SF-IIA Haloacid 36.8 49 0.0011 30.6 4.2 35 34-68 17-51 (236)
150 cd05014 SIS_Kpsf KpsF-like pro 35.3 38 0.00081 27.6 2.9 25 34-58 61-85 (128)
151 TIGR00255 conserved hypothetic 35.1 1.5E+02 0.0032 29.1 7.4 32 199-230 205-236 (291)
152 TIGR01680 Veg_Stor_Prot vegeta 35.1 57 0.0012 31.8 4.4 38 33-70 144-184 (275)
153 PF04111 APG6: Autophagy prote 34.6 2.3E+02 0.0049 27.9 8.7 39 197-235 46-85 (314)
154 PF00834 Ribul_P_3_epim: Ribul 34.4 1.2E+02 0.0027 27.8 6.4 51 34-102 92-142 (201)
155 COG4308 LimA Limonene-1,2-epox 34.1 10 0.00022 32.7 -0.7 11 80-90 109-119 (130)
156 TIGR01511 ATPase-IB1_Cu copper 34.1 44 0.00095 35.3 3.8 35 34-68 408-442 (562)
157 TIGR03185 DNA_S_dndD DNA sulfu 34.0 1.9E+02 0.0042 31.1 8.7 28 254-281 264-291 (650)
158 TIGR02338 gimC_beta prefoldin, 33.8 2.7E+02 0.0058 22.9 8.8 31 250-280 79-109 (110)
159 PRK11820 hypothetical protein; 33.6 1.7E+02 0.0036 28.7 7.4 32 199-230 202-233 (288)
160 COG1579 Zn-ribbon protein, pos 32.8 2.5E+02 0.0054 26.9 8.3 81 199-279 94-176 (239)
161 PF03767 Acid_phosphat_B: HAD 32.4 38 0.00083 31.6 2.7 37 34-70 118-154 (229)
162 TIGR02463 MPGP_rel mannosyl-3- 32.2 55 0.0012 29.4 3.7 33 36-68 21-53 (221)
163 PF07851 TMPIT: TMPIT-like pro 31.8 2.3E+02 0.005 28.4 8.2 82 197-283 7-98 (330)
164 KOG1161 Protein involved in va 31.7 3.6E+02 0.0077 26.9 9.3 16 194-209 48-63 (310)
165 PF07106 TBPIP: Tat binding pr 31.0 3.6E+02 0.0079 23.6 8.7 83 166-271 53-135 (169)
166 TIGR00099 Cof-subfamily Cof su 30.0 69 0.0015 29.5 4.0 47 14-67 6-52 (256)
167 KOG1937 Uncharacterized conser 29.0 1E+02 0.0022 32.2 5.2 40 252-291 403-442 (521)
168 PF14257 DUF4349: Domain of un 28.6 3.9E+02 0.0085 25.1 9.0 57 211-275 136-192 (262)
169 PF00571 CBS: CBS domain CBS d 27.5 1E+02 0.0022 21.1 3.7 38 21-58 3-40 (57)
170 PF08340 DUF1732: Domain of un 27.5 2.9E+02 0.0062 22.5 6.6 31 200-230 1-31 (87)
171 cd05008 SIS_GlmS_GlmD_1 SIS (S 26.9 57 0.0012 26.4 2.6 27 34-60 60-86 (126)
172 KOG1372 GDP-mannose 4,6 dehydr 26.3 22 0.00047 34.7 -0.0 30 175-204 334-363 (376)
173 cd06167 LabA_like LabA_like pr 25.8 95 0.0021 26.0 3.8 32 25-56 99-132 (149)
174 PRK00192 mannosyl-3-phosphogly 25.5 83 0.0018 29.5 3.8 35 34-68 24-58 (273)
175 PF10018 Med4: Vitamin-D-recep 25.5 5E+02 0.011 23.4 8.9 11 296-306 89-99 (188)
176 TIGR01482 SPP-subfamily Sucros 25.2 96 0.0021 27.6 4.0 35 34-68 18-52 (225)
177 PF13851 GAS: Growth-arrest sp 24.9 5.4E+02 0.012 23.6 9.6 19 250-268 112-130 (201)
178 COG3883 Uncharacterized protei 24.9 3.6E+02 0.0079 26.2 8.0 41 250-294 78-118 (265)
179 PF08826 DMPK_coil: DMPK coile 24.7 3.1E+02 0.0068 20.7 7.4 19 199-220 6-24 (61)
180 PF08282 Hydrolase_3: haloacid 24.5 87 0.0019 27.6 3.5 34 33-66 17-50 (254)
181 PF01380 SIS: SIS domain SIS d 23.2 73 0.0016 25.7 2.6 36 34-69 67-102 (131)
182 PF09983 DUF2220: Uncharacteri 23.0 57 0.0012 29.3 2.0 28 148-175 66-94 (181)
183 TIGR01487 SPP-like sucrose-pho 22.8 1.1E+02 0.0023 27.5 3.8 45 14-65 8-52 (215)
184 PRK01158 phosphoglycolate phos 22.4 1.1E+02 0.0024 27.3 3.9 47 14-67 10-56 (230)
185 PF04111 APG6: Autophagy prote 22.2 6.3E+02 0.014 24.8 9.3 20 253-272 107-126 (314)
186 PF11932 DUF3450: Protein of u 22.2 5.3E+02 0.012 24.1 8.5 23 253-275 92-114 (251)
187 PRK13762 tRNA-modifying enzyme 22.1 71 0.0015 31.4 2.7 25 34-58 145-169 (322)
188 PF12689 Acid_PPase: Acid Phos 21.9 1.9E+02 0.0041 26.0 5.1 36 33-68 47-83 (169)
189 PLN02678 seryl-tRNA synthetase 21.7 4E+02 0.0086 27.8 8.1 31 203-233 36-66 (448)
190 PF10168 Nup88: Nuclear pore c 21.4 8E+02 0.017 27.2 10.7 24 250-273 637-660 (717)
191 PF07858 LEH: Limonene-1,2-epo 21.1 24 0.00053 30.3 -0.7 11 80-90 106-116 (125)
192 cd08590 PI-PLCc_Rv2075c_like C 21.0 84 0.0018 30.2 2.9 40 17-56 124-171 (267)
193 KOG3129 26S proteasome regulat 21.0 5.7E+02 0.012 24.3 8.1 27 212-238 19-45 (231)
194 KOG1615 Phosphoserine phosphat 20.8 1.6E+02 0.0034 27.8 4.4 44 25-68 77-125 (227)
195 PRK11637 AmiB activator; Provi 20.7 6.7E+02 0.015 25.4 9.5 73 196-278 49-122 (428)
196 PRK00409 recombination and DNA 20.5 6.6E+02 0.014 28.0 9.9 12 83-94 366-377 (782)
197 cd05005 SIS_PHI Hexulose-6-pho 20.1 95 0.0021 27.2 2.8 25 34-58 89-113 (179)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=4.7e-101 Score=773.22 Aligned_cols=294 Identities=43% Similarity=0.726 Sum_probs=234.8
Q ss_pred ChHHHHHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCC
Q 019576 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITC 80 (339)
Q Consensus 1 ly~DVr~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~ 80 (339)
||+|||+|||+||.+|.||++|++||+|||+|+|+|++||++||++||||||||||+|+|||.+|+|++|+++ +.
T Consensus 153 l~~DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~-----~~ 227 (448)
T PF05761_consen 153 LYQDVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFL-----GE 227 (448)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCS-----ST
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCC-----CC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999766 34
Q ss_pred CCCCccCccEEEEccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHH
Q 019576 81 NSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHK 160 (339)
Q Consensus 81 ~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ 160 (339)
++|||+|||||||+|+||+||+++ +|||+|++++|++.++. .+++ +++|+||+|||+.+|++
T Consensus 228 ~~dW~dlFDvVIv~A~KP~FF~~~--~pfr~vd~~~g~l~~~~------~~~~----------l~~g~vY~gGn~~~l~~ 289 (448)
T PF05761_consen 228 DPDWRDLFDVVIVDARKPGFFTEG--RPFREVDTETGKLKWGK------YVGP----------LEKGKVYSGGNWDQLHK 289 (448)
T ss_dssp TT-GGGCECEEEES--CCHHHCT-----EEEEETTTSSEECS---------SS------------TC-EEEE--HHHHHH
T ss_pred CCChhhheeEEEEcCCCCcccCCC--CceEEEECCCCcccccc------cccc----------ccCCCEeecCCHHHHHH
Confidence 469999999999999999999995 59999999999988652 2444 49999999999999999
Q ss_pred HhccccCCcEEEEcccccccccccccccCceEEEechhcHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhhccC
Q 019576 161 LLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSE 240 (339)
Q Consensus 161 ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~ 240 (339)
++|| +|++||||||||||||++||+.+||||+|||||||+||++|++.++.+++|+.|+.+++.+++.+++++
T Consensus 290 ll~~-~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~------ 362 (448)
T PF05761_consen 290 LLGW-RGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEELQDHLDQLR------ 362 (448)
T ss_dssp HCT---GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHHHHCHHHHHH------
T ss_pred HHcc-CCCeEEEECCchhhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHhcccc------
Confidence 9998 799999999999999999999999999999999999999999999999999999998888888765433
Q ss_pred CCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhhhhhccccccccccccCCCC
Q 019576 241 GIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPD 320 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S~Fa~qv~RyAdLYtS~v~NLl~y~~~ 320 (339)
..++++..++++++.++++.+++++.|||+|||+||||+++|+||+||+||||||||+|+||++|||+
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~~~s~Fa~qv~RyAdlYtS~v~Nll~y~~~ 430 (448)
T PF05761_consen 363 ------------SSSELRPDISELRKERRELRREMKELFNPQFGSLFRTGHNPSYFARQVERYADLYTSSVSNLLNYSPN 430 (448)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETTEEBHHHHHHHHH-SEEESSHHHHHHS-TT
T ss_pred ------------cchhhHHHHHHHHHHHHHHHHHHhhhcccchHHHHhcCCCccHHHHHHHHHhhhhhccccHHHhCCcc
Confidence 22344555556666666666677789999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcCC
Q 019576 321 KYYRPSEGFMPHEFEI 336 (339)
Q Consensus 321 ~~Fr~~~~~lpHE~~~ 336 (339)
++|||++++||||+++
T Consensus 431 ~~Fr~~~~~lpHE~~~ 446 (448)
T PF05761_consen 431 YYFRPPRDLLPHESTV 446 (448)
T ss_dssp -EE-------CCG---
T ss_pred eEEeCCCCCCCCCCCC
Confidence 9999999999999975
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.8e-85 Score=627.18 Aligned_cols=283 Identities=30% Similarity=0.525 Sum_probs=263.7
Q ss_pred ChHHHHHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCC
Q 019576 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITC 80 (339)
Q Consensus 1 ly~DVr~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~ 80 (339)
||+||++||..||+.|.+ +|..|.+|||.++|++..+|++|+.+|||+||||||+|.|+|.+|+|+.|
T Consensus 212 ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG---------- 279 (510)
T KOG2470|consen 212 LYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVG---------- 279 (510)
T ss_pred HHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeC----------
Confidence 699999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHH
Q 019576 81 NSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHK 160 (339)
Q Consensus 81 ~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ 160 (339)
+|||++||||||+|+||.||++. ++||+..|..+|.+ .|+++..+++|+||.+||..+|.+
T Consensus 280 -~~WRdlFDVVIvqA~KP~Fftde-~rPfR~~dek~~sl-----------------~wdkv~klekgkiYy~G~l~~fle 340 (510)
T KOG2470|consen 280 -DDWRDLFDVVIVQANKPEFFTDE-RRPFRKYDEKRGSL-----------------LWDKVDKLEKGKIYYQGNLKSFLE 340 (510)
T ss_pred -ccHHhhhheeEEecCCCcccccc-cCcchhhcccccch-----------------hhhhhhhcccCceeeeccHHHHHH
Confidence 89999999999999999999995 67888888777654 388888899999999999999999
Q ss_pred HhccccCCcEEEEcccccccccccccccCceEEEechhcHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhhccC
Q 019576 161 LLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSE 240 (339)
Q Consensus 161 ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~ 240 (339)
++|| +|++|||||||+|||+.++...+||||+|||||||+||+++|.. +++....||+.++.+||++-.
T Consensus 341 lt~W-rG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e-~y~~s~~w~q~lt~Ller~q~--------- 409 (510)
T KOG2470|consen 341 LTGW-RGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTE-QYRFSQTWLQILTGLLERMQA--------- 409 (510)
T ss_pred Hhcc-CCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHh---------
Confidence 9998 89999999999999999999999999999999999999999965 799999999999999988532
Q ss_pred CCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhhhhhccccccccccccCCCC
Q 019576 241 GIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPD 320 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S~Fa~qv~RyAdLYtS~v~NLl~y~~~ 320 (339)
.+++ +.+..|++|.+||+++|+.++. +||.+|||+|||.++||+|++++.||||||||+++|||+|.+.
T Consensus 410 -~rse---asq~~L~ew~~eRq~lR~~tK~-------~FN~qFGs~FrT~~nptyFsrrl~rfaDiYts~lsnlL~y~~~ 478 (510)
T KOG2470|consen 410 -QRSE---ASQSVLDEWMKERQELRDTTKQ-------MFNAQFGSTFRTDHNPTYFSRRLHRFADIYTSSLSNLLNYRVE 478 (510)
T ss_pred -hhhH---HHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcceeeccCCccHHHHHHHHHHHHHhccHHHHHhcCcc
Confidence 1122 2568899999999999999874 7999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCcCC
Q 019576 321 KYYRPSEGFMPHEFEI 336 (339)
Q Consensus 321 ~~Fr~~~~~lpHE~~~ 336 (339)
|+|||++++||||..+
T Consensus 479 htfYprr~~mpHe~~~ 494 (510)
T KOG2470|consen 479 HTFYPRRTPMPHEVPV 494 (510)
T ss_pred cccCCcCCCCcccccc
Confidence 9999999999999764
No 3
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-64 Score=494.77 Aligned_cols=257 Identities=46% Similarity=0.721 Sum_probs=227.4
Q ss_pred ChHHHHHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCC
Q 019576 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITC 80 (339)
Q Consensus 1 ly~DVr~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~ 80 (339)
+|+|||+|+++||.+|.+|+.++++|+|||++++.++++|.++|++|||+||+|||+|+|||.+|++++|
T Consensus 168 ~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~---------- 237 (424)
T KOG2469|consen 168 GWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYG---------- 237 (424)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHHHhC----------
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCccEEEEccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHH
Q 019576 81 NSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHK 160 (339)
Q Consensus 81 ~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ 160 (339)
.||+.|||+|||.|+||+||.++ +++|+|++++|++++++++ ||+ ++|.+|+||+++.+++
T Consensus 238 -~dW~~yfd~v~~~a~Kp~ff~e~--~vlreV~t~~g~l~~g~~~------~p~----------e~~~~ySggs~~~~~~ 298 (424)
T KOG2469|consen 238 -FDWETYFDLVETRAAKPGFFHEG--TVLREVEPQEGLLKNGDNT------GPL----------EQGGVYSGGSLKTVET 298 (424)
T ss_pred -CCcceeEEEEEEeccCCcccccc--ceeeeeccccccccccccC------Ccc----------hhcccCCcchHHHHHH
Confidence 89999999999999999999996 7999999999999998754 544 9999999999999999
Q ss_pred HhccccCCcEEEEcccccccccccccccCceEEEechhcHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhhccC
Q 019576 161 LLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSE 240 (339)
Q Consensus 161 ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~ 240 (339)
+++. +|++|||+|||||+||+.|||++||||++|||||+.|..+|..+++...++.++.. .++|.+++++.+..+.
T Consensus 299 ~l~~-~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~el~~~~~---~laDiy~~l~~s~~s~ 374 (424)
T KOG2469|consen 299 SMKV-KGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIELLNWSS---KLADIYPNLDLSLLSA 374 (424)
T ss_pred Hhcc-cccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHHHhccch---hhHhhccCCchhhhhc
Confidence 9998 79999999999999999999999999999999999999999999877777777764 5888898888765432
Q ss_pred CCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhhhhhccccc
Q 019576 241 GIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTS 309 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S~Fa~qv~RyAdLYtS 309 (339)
... ....+.+++.+.+| +.+|..|||+|+||++.|+||.|++||||||||
T Consensus 375 ~~~--------------~~~~r~~~~~~~~~-----dk~~~~~~sl~~s~~~~t~~a~q~~r~A~~y~s 424 (424)
T KOG2469|consen 375 PKD--------------LSIKRDIQKLTECM-----DKFYGVWGSLFRTGYQRTRFALQVERYADLYTS 424 (424)
T ss_pred ccc--------------cchhHHHHHHHHhH-----HHHhcchHHhhccccccchHHHHHHHHHHHhcC
Confidence 111 11112222333333 457799999999999999999999999999997
No 4
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=1.7e-57 Score=444.23 Aligned_cols=189 Identities=44% Similarity=0.766 Sum_probs=175.2
Q ss_pred ChHHHHHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCC
Q 019576 1 MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITC 80 (339)
Q Consensus 1 ly~DVr~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~ 80 (339)
||+|||+|||+||++|.||++|++||++||+++|.++.+|++||++|+|+||+|||+++||+.+|+|++|+++ +
T Consensus 154 ~~~dv~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~------~ 227 (343)
T TIGR02244 154 IYQDVRDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFL------G 227 (343)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcc------c
Confidence 6999999999999999999999999999999999999999999999999999999999999999999988554 4
Q ss_pred CCCCccCccEEEEccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHH
Q 019576 81 NSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHK 160 (339)
Q Consensus 81 ~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ 160 (339)
+++|++|||+||++|+||+||++ ++||++|++++|.++++. +..+++|+||+|||+.+|++
T Consensus 228 ~~~w~~yFD~IIt~a~KP~FF~~--~~pf~~v~~~~g~~~~~~-----------------~~~l~~g~vY~gGn~~~~~~ 288 (343)
T TIGR02244 228 EHDWRDYFDVVIVDARKPGFFTE--GRPFRQVDVETGSLKWGE-----------------VDGLEPGKVYSGGSLKQFHE 288 (343)
T ss_pred ccchHhhCcEEEeCCCCCcccCC--CCceEEEeCCCCcccCCc-----------------cccccCCCeEeCCCHHHHHH
Confidence 58999999999999999999997 479999999999877542 22259999999999999999
Q ss_pred HhccccCCcEEEEcccccccccccccccCceEEEechhcHHHHHHHHHhHHHHHH
Q 019576 161 LLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKK 215 (339)
Q Consensus 161 ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~~~~~~~~~~~ 215 (339)
++++ +|++|||||||||+||+.+||.+||||++|+||||.|+++|.++.+++.+
T Consensus 289 ~l~~-~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 289 LLKW-RGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred HHCC-CCCcEEEECCcchHHHHhhHHhcCcEEEEEchhHHHHHHHHhhchhhhhc
Confidence 9998 79999999999999999999999999999999999999999887776554
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.59 E-value=1.2e-07 Score=85.64 Aligned_cols=109 Identities=25% Similarity=0.250 Sum_probs=80.3
Q ss_pred cccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCC
Q 019576 26 PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDN 105 (339)
Q Consensus 26 p~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~ 105 (339)
...++...|.+..+|+.|+++|.++.++||+.-.++...+..+ .|.+|||.|++..... .
T Consensus 89 ~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~----~-- 148 (221)
T TIGR02253 89 KFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL--------------GVRDFFDAVITSEEEG----V-- 148 (221)
T ss_pred HHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC--------------ChHHhccEEEEeccCC----C--
Confidence 3445667789999999999999999999999988887776553 4789999988753211 0
Q ss_pred CCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccc
Q 019576 106 RANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 185 (339)
Q Consensus 106 ~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~sk 185 (339)
.+| ...+ .....+.+|. ...+++||||+...||..++
T Consensus 149 ~KP-------------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~~~di~~A~ 185 (221)
T TIGR02253 149 EKP-------------------------------------HPKI-----FYAALKRLGV-KPEEAVMVGDRLDKDIKGAK 185 (221)
T ss_pred CCC-------------------------------------CHHH-----HHHHHHHcCC-ChhhEEEECCChHHHHHHHH
Confidence 011 0112 2345566776 57899999999999988777
Q ss_pred cccCceEEEechh
Q 019576 186 KVLGWRTMLVVPE 198 (339)
Q Consensus 186 k~~gWrT~~IIpE 198 (339)
+ .||+|++|-.-
T Consensus 186 ~-aG~~~i~~~~~ 197 (221)
T TIGR02253 186 N-LGMKTVWINQG 197 (221)
T ss_pred H-CCCEEEEECCC
Confidence 5 49999998643
No 6
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.33 E-value=3.1e-06 Score=73.63 Aligned_cols=100 Identities=28% Similarity=0.341 Sum_probs=70.5
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+...|.+..+|+.|++.|.++.++||+.... ...... +| ..++||.||+... .+..+|
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~~-------------l~~~f~~i~~~~~------~~~~KP- 141 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-LG-------------LRDLFDVVIFSGD------VGRGKP- 141 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-cC-------------CHHHCCEEEEcCC------CCCCCC-
Confidence 5667999999999999999999999999888 443332 33 4678999987521 000000
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ..+.+.++. ...+++||||+.. ||..++ ..|
T Consensus 142 ------------------------------------~~~~~-----~~~~~~~~~-~~~~~~~vgD~~~-di~aA~-~~G 177 (183)
T TIGR01509 142 ------------------------------------DPDIY-----LLALKKLGL-KPEECLFVDDSPA-GIEAAK-AAG 177 (183)
T ss_pred ------------------------------------CHHHH-----HHHHHHcCC-CcceEEEEcCCHH-HHHHHH-HcC
Confidence 01122 345566776 5799999999984 876665 679
Q ss_pred ceEEEe
Q 019576 190 WRTMLV 195 (339)
Q Consensus 190 WrT~~I 195 (339)
|+|++|
T Consensus 178 ~~~i~v 183 (183)
T TIGR01509 178 MHTVLV 183 (183)
T ss_pred CEEEeC
Confidence 999976
No 7
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.33 E-value=1.5e-06 Score=73.78 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=80.6
Q ss_pred ccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCC
Q 019576 27 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 106 (339)
Q Consensus 27 ~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~ 106 (339)
..++...|.+..+|++|+++|.++.++||++-.++...++.+ | |.++||.|++....+. .
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~-------------~~~~f~~i~~~~~~~~------~ 132 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-G-------------LDDYFDEIISSDDVGS------R 132 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-T-------------HGGGCSEEEEGGGSSS------S
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-c-------------cccccccccccchhhh------h
Confidence 467788899999999999999999999999998888888876 3 5699999988753211 0
Q ss_pred CcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccc
Q 019576 107 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 186 (339)
Q Consensus 107 ~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk 186 (339)
+| ...+ ...+.+-++. ...++++|||+. .||..++
T Consensus 133 Kp-------------------------------------~~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~d~~~A~- 167 (176)
T PF13419_consen 133 KP-------------------------------------DPDA-----YRRALEKLGI-PPEEILFVGDSP-SDVEAAK- 167 (176)
T ss_dssp TT-------------------------------------SHHH-----HHHHHHHHTS-SGGGEEEEESSH-HHHHHHH-
T ss_pred hh-------------------------------------HHHH-----HHHHHHHcCC-CcceEEEEeCCH-HHHHHHH-
Confidence 11 0112 3446666687 689999999999 9987776
Q ss_pred ccCceEEEe
Q 019576 187 VLGWRTMLV 195 (339)
Q Consensus 187 ~~gWrT~~I 195 (339)
..||+|+.|
T Consensus 168 ~~G~~~i~v 176 (176)
T PF13419_consen 168 EAGIKTIWV 176 (176)
T ss_dssp HTTSEEEEE
T ss_pred HcCCeEEeC
Confidence 669999986
No 8
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.30 E-value=1.9e-06 Score=77.02 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=76.1
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcce
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 110 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~ 110 (339)
..-|.+..+|++|+++|.++.++||++..+....+..+ .+.++||.|++...-
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------gl~~~fd~i~~s~~~------------- 144 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA--------------GLDDPFDAVLSADAV------------- 144 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC--------------CChhhhheeEehhhc-------------
Confidence 34589999999999999999999999999988887654 367899998875210
Q ss_pred eecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCc
Q 019576 111 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 190 (339)
Q Consensus 111 ~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gW 190 (339)
|..+ ....+| ..+.+.+|. ...++++|||+. .||..++ ..|+
T Consensus 145 ------~~~K------------------------P~~~~~-----~~~~~~~~~-~p~~~~~vgD~~-~Di~~A~-~~G~ 186 (198)
T TIGR01428 145 ------RAYK------------------------PAPQVY-----QLALEALGV-PPDEVLFVASNP-WDLGGAK-KFGF 186 (198)
T ss_pred ------CCCC------------------------CCHHHH-----HHHHHHhCC-ChhhEEEEeCCH-HHHHHHH-HCCC
Confidence 0000 001122 335566776 578999999999 8987775 6699
Q ss_pred eEEEechh
Q 019576 191 RTMLVVPE 198 (339)
Q Consensus 191 rT~~IIpE 198 (339)
+|+.|-+.
T Consensus 187 ~~i~v~r~ 194 (198)
T TIGR01428 187 KTAWVNRP 194 (198)
T ss_pred cEEEecCC
Confidence 99998763
No 9
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.16 E-value=9.3e-06 Score=74.89 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=75.6
Q ss_pred cccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCC
Q 019576 28 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRA 107 (339)
Q Consensus 28 kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~ 107 (339)
+++..-|....+|+.||++|.++.++||+.-.++..++..+ .|.++||+|++.-..+ ..+
T Consensus 92 ~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~------~~K 151 (229)
T PRK13226 92 TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL--------------GWEQRCAVLIGGDTLA------ERK 151 (229)
T ss_pred hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------------CchhcccEEEecCcCC------CCC
Confidence 34555689999999999999999999999988877766553 4788999887653211 001
Q ss_pred cceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccc
Q 019576 108 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 187 (339)
Q Consensus 108 ~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~ 187 (339)
| ...+ ...+.+.+|. ...+++||||+. .||..++ .
T Consensus 152 P-------------------------------------~p~~-----~~~~~~~l~~-~p~~~l~IGDs~-~Di~aA~-~ 186 (229)
T PRK13226 152 P-------------------------------------HPLP-----LLVAAERIGV-APTDCVYVGDDE-RDILAAR-A 186 (229)
T ss_pred C-------------------------------------CHHH-----HHHHHHHhCC-ChhhEEEeCCCH-HHHHHHH-H
Confidence 1 0111 2345666787 689999999995 7977665 6
Q ss_pred cCceEEEec
Q 019576 188 LGWRTMLVV 196 (339)
Q Consensus 188 ~gWrT~~II 196 (339)
.|++|++|.
T Consensus 187 aG~~~i~v~ 195 (229)
T PRK13226 187 AGMPSVAAL 195 (229)
T ss_pred CCCcEEEEe
Confidence 699999984
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.13 E-value=8.6e-06 Score=76.16 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=77.3
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|.+..+|+.|++.|.++.++||+.-.++...+..+ .|.+|||.||+...-+. .+|
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~iv~~~~~~~------~KP- 165 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL--------------GLSDFFQAVIIGSECEH------AKP- 165 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc--------------CChhhCcEEEecCcCCC------CCC-
Confidence 444578999999999999999999999999999998864 47899999988764210 011
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+ .....+.++. ...+++||||.. .||..++ ..|
T Consensus 166 ------------------------------------~p~~-----~~~a~~~~~~-~~~~~l~vgDs~-~Di~aA~-~aG 201 (248)
T PLN02770 166 ------------------------------------HPDP-----YLKALEVLKV-SKDHTFVFEDSV-SGIKAGV-AAG 201 (248)
T ss_pred ------------------------------------ChHH-----HHHHHHHhCC-ChhHEEEEcCCH-HHHHHHH-HCC
Confidence 0001 1234455666 578999999999 8988887 669
Q ss_pred ceEEEec
Q 019576 190 WRTMLVV 196 (339)
Q Consensus 190 WrT~~II 196 (339)
++|+.|-
T Consensus 202 i~~i~v~ 208 (248)
T PLN02770 202 MPVVGLT 208 (248)
T ss_pred CEEEEEe
Confidence 9999985
No 11
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.13 E-value=3.4e-06 Score=75.82 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
....|.+..+|+.||++|.++.++||++-..+....... ..|.++||.|++...=+ .++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~-------------~~l~~~fd~v~~s~~~~------~~K-- 141 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY-------------PEVRAAADHIYLSQDLG------MRK-- 141 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc-------------hhHHHhcCEEEEecccC------CCC--
Confidence 345688999999999999999999999876654433322 35788999988764200 000
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
....+| ....+.+|. ...+++||||+.. ||..++ ..|
T Consensus 142 -----------------------------------P~p~~~-----~~~~~~~~~-~p~~~l~vgD~~~-di~aA~-~aG 178 (199)
T PRK09456 142 -----------------------------------PEARIY-----QHVLQAEGF-SAADAVFFDDNAD-NIEAAN-ALG 178 (199)
T ss_pred -----------------------------------CCHHHH-----HHHHHHcCC-ChhHeEEeCCCHH-HHHHHH-HcC
Confidence 112233 335566676 6789999999975 655555 679
Q ss_pred ceEEEech
Q 019576 190 WRTMLVVP 197 (339)
Q Consensus 190 WrT~~IIp 197 (339)
|+|+.|-.
T Consensus 179 ~~~i~~~~ 186 (199)
T PRK09456 179 ITSILVTD 186 (199)
T ss_pred CEEEEecC
Confidence 99998854
No 12
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.12 E-value=4.8e-06 Score=74.90 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=74.8
Q ss_pred ccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCc
Q 019576 29 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 108 (339)
Q Consensus 29 Yi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~ 108 (339)
.+..-|....+|++|+++|.++.++||+.-.++...+..+ .|.++||.|++...- .. .+|
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~----~~--~KP 132 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL--------------GLLPLFDHVIGSDEV----PR--PKP 132 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc--------------CChhheeeEEecCcC----CC--CCC
Confidence 3555689999999999999999999999999988877654 578899988763210 00 001
Q ss_pred ceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccccc
Q 019576 109 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 188 (339)
Q Consensus 109 ~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~ 188 (339)
+..+| ....+-++. ...+++||||+. .||..++ ..
T Consensus 133 -------------------------------------~~~~~-----~~~~~~~~~-~~~~~l~igD~~-~Di~aA~-~~ 167 (205)
T TIGR01454 133 -------------------------------------APDIV-----REALRLLDV-PPEDAVMVGDAV-TDLASAR-AA 167 (205)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCC-ChhheEEEcCCH-HHHHHHH-Hc
Confidence 01122 245556676 678999999997 7987666 55
Q ss_pred CceEEEec
Q 019576 189 GWRTMLVV 196 (339)
Q Consensus 189 gWrT~~II 196 (339)
|+++++|.
T Consensus 168 Gi~~i~~~ 175 (205)
T TIGR01454 168 GTATVAAL 175 (205)
T ss_pred CCeEEEEE
Confidence 99999885
No 13
>PRK09449 dUMP phosphatase; Provisional
Probab=98.09 E-value=7.1e-06 Score=74.54 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|....+|+.|+ +|.++.++||+..+.++..+..+ .+.+|||.|++...-. ..+|
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~~~~~~------~~KP- 151 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT--------------GLRDYFDLLVISEQVG------VAKP- 151 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC--------------ChHHHcCEEEEECccC------CCCC-
Confidence 345688999999999 67899999999999888877664 3678999998763200 0001
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+-+|.....+++||||+...||..++ ..|
T Consensus 152 ------------------------------------~p~~~-----~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~-~aG 189 (224)
T PRK09449 152 ------------------------------------DVAIF-----DYALEQMGNPDRSRVLMVGDNLHSDILGGI-NAG 189 (224)
T ss_pred ------------------------------------CHHHH-----HHHHHHcCCCCcccEEEEcCCcHHHHHHHH-HCC
Confidence 00122 234444554223589999999999987666 669
Q ss_pred ceEEEech
Q 019576 190 WRTMLVVP 197 (339)
Q Consensus 190 WrT~~IIp 197 (339)
|+|+.|.+
T Consensus 190 ~~~i~~~~ 197 (224)
T PRK09449 190 IDTCWLNA 197 (224)
T ss_pred CcEEEECC
Confidence 99999864
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=98.07 E-value=1.7e-05 Score=71.12 Aligned_cols=104 Identities=24% Similarity=0.297 Sum_probs=76.0
Q ss_pred cccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCC
Q 019576 28 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRA 107 (339)
Q Consensus 28 kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~ 107 (339)
+.+...|....+|+.|+++|.++.++||+.-.++..++..+ +|.+|||.|++...-+ . .+
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~--~K 141 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL--------------GLAKYFSVLIGGDSLA----Q--RK 141 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CcHhhCcEEEecCCCC----C--CC
Confidence 34556789999999999999999999999999999888764 4788999886532100 0 00
Q ss_pred cceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccc
Q 019576 108 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 187 (339)
Q Consensus 108 ~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~ 187 (339)
| ...+| ..+++.++. ...+++||||+ ..|+..++ .
T Consensus 142 p-------------------------------------~p~~~-----~~~~~~~~~-~~~~~~~igDs-~~d~~aa~-~ 176 (213)
T TIGR01449 142 P-------------------------------------HPDPL-----LLAAERLGV-APQQMVYVGDS-RVDIQAAR-A 176 (213)
T ss_pred C-------------------------------------ChHHH-----HHHHHHcCC-ChhHeEEeCCC-HHHHHHHH-H
Confidence 0 01122 345566676 57889999999 58987777 4
Q ss_pred cCceEEEec
Q 019576 188 LGWRTMLVV 196 (339)
Q Consensus 188 ~gWrT~~II 196 (339)
.|+.++.|.
T Consensus 177 aG~~~i~v~ 185 (213)
T TIGR01449 177 AGCPSVLLT 185 (213)
T ss_pred CCCeEEEEc
Confidence 699999884
No 15
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.06 E-value=1.2e-05 Score=76.29 Aligned_cols=100 Identities=9% Similarity=0.078 Sum_probs=75.4
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|+.|+++|.++.++||+...++..++..+ .|.+|||.||+...-. ..+|
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~ii~~~d~~------~~KP--- 166 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV--------------GMEGFFSVVLAAEDVY------RGKP--- 166 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc--------------CCHhhCcEEEecccCC------CCCC---
Confidence 3588999999999999999999999999999988875 4889999999864200 0011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+| ....+.+|. ...+++||||.. .||..++ ..||+
T Consensus 167 ----------------------------------~Pe~~-----~~a~~~l~~-~p~~~l~IgDs~-~Di~aA~-~aG~~ 204 (260)
T PLN03243 167 ----------------------------------DPEMF-----MYAAERLGF-IPERCIVFGNSN-SSVEAAH-DGCMK 204 (260)
T ss_pred ----------------------------------CHHHH-----HHHHHHhCC-ChHHeEEEcCCH-HHHHHHH-HcCCE
Confidence 01122 245566776 678999999996 6876666 66999
Q ss_pred EEEec
Q 019576 192 TMLVV 196 (339)
Q Consensus 192 T~~II 196 (339)
|++|-
T Consensus 205 ~i~v~ 209 (260)
T PLN03243 205 CVAVA 209 (260)
T ss_pred EEEEe
Confidence 99885
No 16
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.03 E-value=7.4e-06 Score=73.32 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcceee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 112 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v 112 (339)
.|....+|+.|+++|.++.++||++... ...+.. -.+.++||.|++...- +..+|
T Consensus 107 ~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~--------------~~l~~~fd~i~~s~~~------~~~KP---- 161 (203)
T TIGR02252 107 YPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA--------------LGLLEYFDFVVTSYEV------GAEKP---- 161 (203)
T ss_pred CcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH--------------CCcHHhcceEEeeccc------CCCCC----
Confidence 5788999999999999999999997653 333332 2478899998874320 00001
Q ss_pred cCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCceE
Q 019576 113 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 192 (339)
Q Consensus 113 ~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT 192 (339)
...+ .....+.+|. ...+++||||....||..++ ..||+|
T Consensus 162 ---------------------------------~~~~-----~~~~~~~~~~-~~~~~~~IgD~~~~Di~~A~-~aG~~~ 201 (203)
T TIGR02252 162 ---------------------------------DPKI-----FQEALERAGI-SPEEALHIGDSLRNDYQGAR-AAGWRA 201 (203)
T ss_pred ---------------------------------CHHH-----HHHHHHHcCC-ChhHEEEECCCchHHHHHHH-HcCCee
Confidence 0112 2334555676 67899999999999987776 569998
Q ss_pred EE
Q 019576 193 ML 194 (339)
Q Consensus 193 ~~ 194 (339)
++
T Consensus 202 i~ 203 (203)
T TIGR02252 202 LL 203 (203)
T ss_pred eC
Confidence 73
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.03 E-value=6.8e-06 Score=75.90 Aligned_cols=104 Identities=16% Similarity=0.216 Sum_probs=73.6
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+...|.+..+|+.|+++|.++.++||+...+++..+..+ .|.+|||.||+...-. . .+|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~iv~s~~~~----~--~KP- 150 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT--------------GLDAHLDLLLSTHTFG----Y--PKE- 150 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC--------------CcHHHCCEEEEeeeCC----C--CCC-
Confidence 344588999999999999999999999999888877653 4789999988754210 0 011
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ...++.+|. ...+++||||... ||. +-+..|
T Consensus 151 ------------------------------------~p~~~-----~~~~~~~~~-~p~~~l~igDs~~-di~-aA~~aG 186 (224)
T PRK14988 151 ------------------------------------DQRLW-----QAVAEHTGL-KAERTLFIDDSEP-ILD-AAAQFG 186 (224)
T ss_pred ------------------------------------CHHHH-----HHHHHHcCC-ChHHEEEEcCCHH-HHH-HHHHcC
Confidence 00122 234555676 6789999999985 765 445779
Q ss_pred ceEEEechh
Q 019576 190 WRTMLVVPE 198 (339)
Q Consensus 190 WrT~~IIpE 198 (339)
|+|+..|+-
T Consensus 187 ~~~~~~v~~ 195 (224)
T PRK14988 187 IRYCLGVTN 195 (224)
T ss_pred CeEEEEEeC
Confidence 998665544
No 18
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.00 E-value=1.9e-05 Score=66.28 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=69.4
Q ss_pred ccccccCCChHHHHHHHHHcCCeEEEeeCCC--------hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 019576 27 KTYINEDRSIVPMLKMLRESGRSTFLVTNSL--------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 98 (339)
Q Consensus 27 ~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~--------~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP 98 (339)
......-|.+..+|+.|+++|.+++++||+. .+++...+..+ | - .|+.+++..
T Consensus 21 ~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~-----------l----~~~~~~~~~--- 81 (132)
T TIGR01662 21 EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-G-----------V----PIDVLYACP--- 81 (132)
T ss_pred HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-C-----------C----CEEEEEECC---
Confidence 3334556899999999999999999999998 66666666654 2 1 134444332
Q ss_pred CCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh-ccccCCcEEEEcccc
Q 019576 99 GFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHI 177 (339)
Q Consensus 99 ~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll-~~~~g~~VLY~GDhI 177 (339)
. . .+| +. +....+++.+ +. ...+++||||+.
T Consensus 82 ~---~--~KP-------------------------------------~~-----~~~~~~~~~~~~~-~~~~~v~IGD~~ 113 (132)
T TIGR01662 82 H---C--RKP-------------------------------------KP-----GMFLEALKRFNEI-DPEESVYVGDQD 113 (132)
T ss_pred C---C--CCC-------------------------------------Ch-----HHHHHHHHHcCCC-ChhheEEEcCCC
Confidence 0 0 011 00 1123455556 36 678999999987
Q ss_pred cccccccccccCceEEEech
Q 019576 178 YGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 178 ~~Di~~skk~~gWrT~~IIp 197 (339)
..||..++ ..||+|++|-|
T Consensus 114 ~~Di~~A~-~~Gi~~i~~~~ 132 (132)
T TIGR01662 114 LTDLQAAK-RAGLAFILVAP 132 (132)
T ss_pred cccHHHHH-HCCCeEEEeeC
Confidence 89987775 66999999865
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.94 E-value=3.8e-05 Score=69.53 Aligned_cols=104 Identities=26% Similarity=0.259 Sum_probs=75.4
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|....+|+.|+++|.++.++||+.-.++..++..+ .|.+|||.|++...-+ . .+
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~--------------gl~~~f~~i~~~~~~~----~--~K-- 138 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT--------------GLDEFFDVVITLDDVE----H--AK-- 138 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhceeEEEecCcCC----C--CC--
Confidence 344588999999999999999999999988888887664 4789999988632100 0 00
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
.+..+| ..+.+-++. ...+++||||+. .||..++ ..|
T Consensus 139 -----------------------------------p~p~~~-----~~~~~~~~~-~~~~~~~iGDs~-~Di~aa~-~aG 175 (214)
T PRK13288 139 -----------------------------------PDPEPV-----LKALELLGA-KPEEALMVGDNH-HDILAGK-NAG 175 (214)
T ss_pred -----------------------------------CCcHHH-----HHHHHHcCC-CHHHEEEECCCH-HHHHHHH-HCC
Confidence 111122 235555675 578999999997 8987776 559
Q ss_pred ceEEEechh
Q 019576 190 WRTMLVVPE 198 (339)
Q Consensus 190 WrT~~IIpE 198 (339)
+++++|-..
T Consensus 176 ~~~i~v~~g 184 (214)
T PRK13288 176 TKTAGVAWT 184 (214)
T ss_pred CeEEEEcCC
Confidence 999998543
No 20
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.94 E-value=2.6e-05 Score=62.98 Aligned_cols=117 Identities=28% Similarity=0.345 Sum_probs=77.8
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+...|.+..+|+.|+++|.+++++||+...++...+..+ | +..+|+.|++....+.+-... ..+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~-~-------------~~~~~~~i~~~~~~~~~~~~~-~~~- 86 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL-G-------------LDDYFDPVITSNGAAIYYPKE-GLF- 86 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc-C-------------Cchhhhheeccchhhhhcccc-ccc-
Confidence 344688999999999999999999999988888888764 2 457788888776655433221 100
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
. + +.+ ..++ .+. .+....+.+.++. ...+++||||+. +|+...+ ..|
T Consensus 87 ~------~-------~~~-~~~~------------~~~----~~~~~~~~~~~~~-~~~~~~~igD~~-~d~~~~~-~~g 133 (139)
T cd01427 87 L------G-------GGP-FDIG------------KPN----PDKLLAALKLLGV-DPEEVLMVGDSL-NDIEMAK-AAG 133 (139)
T ss_pred c------c-------ccc-cccC------------CCC----HHHHHHHHHHcCC-ChhhEEEeCCCH-HHHHHHH-HcC
Confidence 0 0 000 0011 111 1223455666665 578999999999 9987777 559
Q ss_pred ceEEEe
Q 019576 190 WRTMLV 195 (339)
Q Consensus 190 WrT~~I 195 (339)
|+|++|
T Consensus 134 ~~~i~v 139 (139)
T cd01427 134 GLGVAV 139 (139)
T ss_pred CceeeC
Confidence 999875
No 21
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.92 E-value=2.4e-05 Score=72.85 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=73.3
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCc-cEEEEccCCCCCCcCCCCCc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF-DVVITGSAKPGFFHEDNRAN 108 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~F-DvVIv~A~KP~FF~~~~~~~ 108 (339)
+..-|.+..+|+.|+++|.++.++||+.-..++.++..+ | +.+|| |.||+...-+. .+|
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~-g-------------l~~~f~d~ii~~~~~~~------~KP 157 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA-A-------------LQGYRPDYNVTTDDVPA------GRP 157 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH-H-------------hcCCCCceEEccccCCC------CCC
Confidence 445689999999999999999999999999999888765 2 35664 88876432110 011
Q ss_pred ceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccccc
Q 019576 109 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 188 (339)
Q Consensus 109 ~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~ 188 (339)
...+| ....+.++.....+++||||.. .||..++ ..
T Consensus 158 -------------------------------------~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~-~a 193 (253)
T TIGR01422 158 -------------------------------------APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGR-NA 193 (253)
T ss_pred -------------------------------------CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHH-HC
Confidence 01122 2244455652257899999998 9987777 55
Q ss_pred CceEEEech
Q 019576 189 GWRTMLVVP 197 (339)
Q Consensus 189 gWrT~~IIp 197 (339)
|++|++|..
T Consensus 194 Gi~~i~v~~ 202 (253)
T TIGR01422 194 GMWTVGLIL 202 (253)
T ss_pred CCeEEEEec
Confidence 999999953
No 22
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.90 E-value=1.9e-05 Score=71.15 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=68.5
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc----CCCCCCcCCCC
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDNR 106 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A----~KP~FF~~~~~ 106 (339)
...|.+..+|+.||++|.++.++||+.......... +.. ..+.++||.|++.. +||.
T Consensus 94 ~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~-~~~-----------~~l~~~fd~v~~s~~~~~~KP~------- 154 (211)
T TIGR02247 94 KLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEA-LLP-----------GDIMALFDAVVESCLEGLRKPD------- 154 (211)
T ss_pred ccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhH-hhh-----------hhhHhhCCEEEEeeecCCCCCC-------
Confidence 345789999999999999999999997655332221 111 24678999998542 2220
Q ss_pred CcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccc
Q 019576 107 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 186 (339)
Q Consensus 107 ~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk 186 (339)
..+| ...++-+|. ...+++||||. ..||..++
T Consensus 155 ----------------------------------------p~~~-----~~~~~~~g~-~~~~~l~i~D~-~~di~aA~- 186 (211)
T TIGR02247 155 ----------------------------------------PRIY-----QLMLERLGV-APEECVFLDDL-GSNLKPAA- 186 (211)
T ss_pred ----------------------------------------HHHH-----HHHHHHcCC-CHHHeEEEcCC-HHHHHHHH-
Confidence 1122 335555676 67899999875 56876666
Q ss_pred ccCceEEEech
Q 019576 187 VLGWRTMLVVP 197 (339)
Q Consensus 187 ~~gWrT~~IIp 197 (339)
..||.|++|.+
T Consensus 187 ~aG~~~i~v~~ 197 (211)
T TIGR02247 187 ALGITTIKVSD 197 (211)
T ss_pred HcCCEEEEECC
Confidence 56999999864
No 23
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.89 E-value=1.3e-05 Score=70.27 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=66.5
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|+.|+++|.++.++||+.- ...+++. -.|.++||.|+....-+ ..+|
T Consensus 88 ~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~--------------~~l~~~f~~~~~~~~~~------~~kp--- 142 (185)
T TIGR01990 88 VLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK--------------LGLIDYFDAIVDPAEIK------KGKP--- 142 (185)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh--------------cCcHhhCcEEEehhhcC------CCCC---
Confidence 358899999999999999999999852 3333332 35789999988654211 0011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+|. ..++.++. ...+++||||+. .||..++ ..|++
T Consensus 143 ----------------------------------~p~~~~-----~~~~~~~~-~~~~~v~vgD~~-~di~aA~-~aG~~ 180 (185)
T TIGR01990 143 ----------------------------------DPEIFL-----AAAEGLGV-SPSECIGIEDAQ-AGIEAIK-AAGMF 180 (185)
T ss_pred ----------------------------------ChHHHH-----HHHHHcCC-CHHHeEEEecCH-HHHHHHH-HcCCE
Confidence 111222 34555665 578999999996 8977666 56999
Q ss_pred EEEe
Q 019576 192 TMLV 195 (339)
Q Consensus 192 T~~I 195 (339)
|++|
T Consensus 181 ~i~v 184 (185)
T TIGR01990 181 AVGV 184 (185)
T ss_pred EEec
Confidence 9986
No 24
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.87 E-value=2.3e-05 Score=70.96 Aligned_cols=105 Identities=18% Similarity=0.077 Sum_probs=74.3
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|..|+++|.++.++||+.-.++..++..+ | -.+.+|||.|++...-. . .+|
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~-----------l~~~~~f~~i~~~~~~~---~---~KP--- 146 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-G-----------WTVGDDVDAVVCPSDVA---A---GRP--- 146 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-h-----------hhhhccCCEEEcCCcCC---C---CCC---
Confidence 4478999999999999999999999999999998864 3 12239999999864311 0 011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcccc-CCcEEEEcccccccccccccccCc
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIES-SSQVLYVGDHIYGDILRSKKVLGW 190 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~-g~~VLY~GDhI~~Di~~skk~~gW 190 (339)
...+| ....+.++. . ..+++||||.. .||..++ ..||
T Consensus 147 ----------------------------------~p~~~-----~~a~~~~~~-~~~~~~~~igD~~-~Di~aa~-~aG~ 184 (220)
T TIGR03351 147 ----------------------------------APDLI-----LRAMELTGV-QDVQSVAVAGDTP-NDLEAGI-NAGA 184 (220)
T ss_pred ----------------------------------CHHHH-----HHHHHHcCC-CChhHeEEeCCCH-HHHHHHH-HCCC
Confidence 00111 223444565 4 47999999997 7976666 6699
Q ss_pred eE-EEechhc
Q 019576 191 RT-MLVVPEL 199 (339)
Q Consensus 191 rT-~~IIpEL 199 (339)
+| ++|...-
T Consensus 185 ~~~i~~~~g~ 194 (220)
T TIGR03351 185 GAVVGVLTGA 194 (220)
T ss_pred CeEEEEecCC
Confidence 99 8876543
No 25
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.86 E-value=5.4e-05 Score=68.97 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=76.1
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|+.|++.|.++.++||+.-..+..+++++ .+.+|||.|++... +.. .+|
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~----~~~--~Kp--- 149 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF--------------DLRDYFDALASAEK----LPY--SKP--- 149 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC--------------cchhcccEEEEccc----CCC--CCC---
Confidence 3478999999999999999999999999998888874 36889999886632 110 011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+ ...+++.+|. ...+++||||+. .||-..+ ..|++
T Consensus 150 ----------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~-~Di~aA~-~aG~~ 187 (222)
T PRK10826 150 ----------------------------------HPEV-----YLNCAAKLGV-DPLTCVALEDSF-NGMIAAK-AARMR 187 (222)
T ss_pred ----------------------------------CHHH-----HHHHHHHcCC-CHHHeEEEcCCh-hhHHHHH-HcCCE
Confidence 0112 2446667776 578999999998 7976666 66999
Q ss_pred EEEechh
Q 019576 192 TMLVVPE 198 (339)
Q Consensus 192 T~~IIpE 198 (339)
|++|-..
T Consensus 188 ~i~v~~~ 194 (222)
T PRK10826 188 SIVVPAP 194 (222)
T ss_pred EEEecCC
Confidence 9998644
No 26
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.84 E-value=3.7e-05 Score=73.59 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=75.8
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|.+..+|+.|+++|.++.++||+.-.+++.++..+ .+.+|||.|++....+ +
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~--------------gl~~~F~~vi~~~~~~---------~- 196 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ--------------GLRSLFSVVQAGTPIL---------S- 196 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhheEEEEecCCCC---------C-
Confidence 344689999999999999999999999999999998765 3688999887542100 0
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
+..+ ...+++.++. ...++|||||.+ .||..++. .|
T Consensus 197 ------------------------------------k~~~-----~~~~l~~~~~-~p~~~l~IGDs~-~Di~aA~~-AG 232 (273)
T PRK13225 197 ------------------------------------KRRA-----LSQLVAREGW-QPAAVMYVGDET-RDVEAARQ-VG 232 (273)
T ss_pred ------------------------------------CHHH-----HHHHHHHhCc-ChhHEEEECCCH-HHHHHHHH-CC
Confidence 0001 2234555665 568999999996 69877775 79
Q ss_pred ceEEEechhc
Q 019576 190 WRTMLVVPEL 199 (339)
Q Consensus 190 WrT~~IIpEL 199 (339)
|+|++|....
T Consensus 233 ~~~I~v~~g~ 242 (273)
T PRK13225 233 LIAVAVTWGF 242 (273)
T ss_pred CeEEEEecCC
Confidence 9999996543
No 27
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.84 E-value=3.5e-05 Score=74.00 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=74.9
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcce
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 110 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~ 110 (339)
..-|.+..+|+.|++.|.++.++||+.-.+.+.++..+.+ ..|.++||+| .+.. ... .+|
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~-----------~~~~~~~~~v-~~~~----~~~--~KP-- 203 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG-----------PERAQGLDVF-AGDD----VPK--KKP-- 203 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc-----------ccccCceEEE-eccc----cCC--CCC--
Confidence 4457889999999999999999999999999999987765 4677778765 2210 000 011
Q ss_pred eecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCc
Q 019576 111 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 190 (339)
Q Consensus 111 ~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gW 190 (339)
...+ .....+.+|. ...+++||||.+ .||..++ ..|+
T Consensus 204 -----------------------------------~p~~-----~~~a~~~~~~-~p~~~l~IGDs~-~Di~aA~-~aG~ 240 (286)
T PLN02779 204 -----------------------------------DPDI-----YNLAAETLGV-DPSRCVVVEDSV-IGLQAAK-AAGM 240 (286)
T ss_pred -----------------------------------CHHH-----HHHHHHHhCc-ChHHEEEEeCCH-HhHHHHH-HcCC
Confidence 0011 2335566776 678999999998 5987777 5699
Q ss_pred eEEEech
Q 019576 191 RTMLVVP 197 (339)
Q Consensus 191 rT~~IIp 197 (339)
++++|..
T Consensus 241 ~~i~v~~ 247 (286)
T PLN02779 241 RCIVTKS 247 (286)
T ss_pred EEEEEcc
Confidence 9998855
No 28
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.84 E-value=3.9e-05 Score=69.06 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=75.3
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcce
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 110 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~ 110 (339)
...|....+|+.|++. .++.++||+.-.+....+..+ .|..+||.|++...-. ..+|
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~------~~KP-- 153 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS--------------GLFPFFDDIFVSEDAG------IQKP-- 153 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC--------------CcHhhcCEEEEcCccC------CCCC--
Confidence 3457889999999999 899999999998888877654 4678999998854200 0001
Q ss_pred eecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh-ccccCCcEEEEcccccccccccccccC
Q 019576 111 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 111 ~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll-~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+-+ |. +..+++||||+...||..++ ..|
T Consensus 154 -----------------------------------~~~~~-----~~~~~~~~~~-~~~~~v~igD~~~~di~~A~-~~G 191 (224)
T TIGR02254 154 -----------------------------------DKEIF-----NYALERMPKF-SKEEVLMIGDSLTADIKGGQ-NAG 191 (224)
T ss_pred -----------------------------------CHHHH-----HHHHHHhcCC-CchheEEECCCcHHHHHHHH-HCC
Confidence 11133 2345556 65 57899999999889988777 559
Q ss_pred ceEEEechh
Q 019576 190 WRTMLVVPE 198 (339)
Q Consensus 190 WrT~~IIpE 198 (339)
|.++.+-+.
T Consensus 192 ~~~i~~~~~ 200 (224)
T TIGR02254 192 LDTCWMNPD 200 (224)
T ss_pred CcEEEECCC
Confidence 999998654
No 29
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.81 E-value=3e-05 Score=69.55 Aligned_cols=96 Identities=24% Similarity=0.332 Sum_probs=65.5
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcceee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 112 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v 112 (339)
.|++..||..||++|-++++++|-. .+-=.....-+|- | -|-.|+||. . ..|++
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~-e~RV~~~~~~l~v-----------------~-fi~~A~KP~--~----~~fr~- 101 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNK-ESRVARAAEKLGV-----------------P-FIYRAKKPF--G----RAFRR- 101 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCC-HHHHHhhhhhcCC-----------------c-eeecccCcc--H----HHHHH-
Confidence 3789999999999999999999943 3222222222331 1 256788882 1 11222
Q ss_pred cCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCceE
Q 019576 113 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 192 (339)
Q Consensus 113 ~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT 192 (339)
.++-++. ..++|+.|||.||.||+..+ ..|.||
T Consensus 102 ---------------------------------------------Al~~m~l-~~~~vvmVGDqL~TDVlggn-r~G~~t 134 (175)
T COG2179 102 ---------------------------------------------ALKEMNL-PPEEVVMVGDQLFTDVLGGN-RAGMRT 134 (175)
T ss_pred ---------------------------------------------HHHHcCC-ChhHEEEEcchhhhhhhccc-ccCcEE
Confidence 1222344 67899999999999999888 669999
Q ss_pred EEechhcHH
Q 019576 193 MLVVPELER 201 (339)
Q Consensus 193 ~~IIpEL~~ 201 (339)
++|.|=-..
T Consensus 135 IlV~Pl~~~ 143 (175)
T COG2179 135 ILVEPLVAP 143 (175)
T ss_pred EEEEEeccc
Confidence 999985443
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.75 E-value=5.1e-05 Score=76.19 Aligned_cols=102 Identities=10% Similarity=0.078 Sum_probs=75.6
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|+.|+++|.++.++||+.-.+++..+..+ .|.+|||.||+...... .+|
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l--------------gL~~yFd~Iv~sddv~~------~KP--- 273 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI--------------GIRGFFSVIVAAEDVYR------GKP--- 273 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCHHHceEEEecCcCCC------CCC---
Confidence 3478999999999999999999999999999888764 47899999988653210 011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+| ....+.+|. ...+++||||.. .||..++ ..||+
T Consensus 274 ----------------------------------~Peif-----l~A~~~lgl-~Peecl~IGDS~-~DIeAAk-~AGm~ 311 (381)
T PLN02575 274 ----------------------------------DPEMF-----IYAAQLLNF-IPERCIVFGNSN-QTVEAAH-DARMK 311 (381)
T ss_pred ----------------------------------CHHHH-----HHHHHHcCC-CcccEEEEcCCH-HHHHHHH-HcCCE
Confidence 01122 124455676 688999999987 5865555 66999
Q ss_pred EEEechh
Q 019576 192 TMLVVPE 198 (339)
Q Consensus 192 T~~IIpE 198 (339)
|++|...
T Consensus 312 ~IgV~~~ 318 (381)
T PLN02575 312 CVAVASK 318 (381)
T ss_pred EEEECCC
Confidence 9999753
No 31
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.74 E-value=4.2e-05 Score=71.25 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=73.9
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE--ccCCCCCCcCCCCCc
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT--GSAKPGFFHEDNRAN 108 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv--~A~KP~FF~~~~~~~ 108 (339)
..-|.+..+|++|+++|.++.++||++-..+..++.+.-. .++.+|||.++. -+.||
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~-----------~~L~~~f~~~fd~~~g~KP---------- 153 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA-----------GNLTPYFSGYFDTTVGLKT---------- 153 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc-----------cchhhhcceEEEeCcccCC----------
Confidence 3458899999999999999999999999999988877632 245566664321 01122
Q ss_pred ceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccccc
Q 019576 109 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 188 (339)
Q Consensus 109 ~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~ 188 (339)
.... ...+.+-+|. ...++|||||+. .||..++ ..
T Consensus 154 -------------------------------------~p~~-----y~~i~~~lgv-~p~e~lfVgDs~-~Di~AA~-~A 188 (220)
T TIGR01691 154 -------------------------------------EAQS-----YVKIAGQLGS-PPREILFLSDII-NELDAAR-KA 188 (220)
T ss_pred -------------------------------------CHHH-----HHHHHHHhCc-ChhHEEEEeCCH-HHHHHHH-Hc
Confidence 0112 2445666786 678999999995 8876665 67
Q ss_pred CceEEEechhc
Q 019576 189 GWRTMLVVPEL 199 (339)
Q Consensus 189 gWrT~~IIpEL 199 (339)
||+|++|++.=
T Consensus 189 G~~ti~v~r~g 199 (220)
T TIGR01691 189 GLHTGQLVRPG 199 (220)
T ss_pred CCEEEEEECCC
Confidence 99999998654
No 32
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.71 E-value=9.1e-05 Score=64.83 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+...|.+..+|+.|+++|.++.++||+ .+++.+++.+ .+.+|||.|++....+ ..+|
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~--------------~l~~~f~~v~~~~~~~------~~kp- 143 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL--------------GLTDYFDAIVDADEVK------EGKP- 143 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc--------------ChHHHCCEeeehhhCC------CCCC-
Confidence 456789999999999999999999999 6666666543 4788999988743111 0011
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+-++. ...+++||||.. .||..++ ..|
T Consensus 144 ------------------------------------~~~~~-----~~~~~~~~~-~~~~~v~IgD~~-~di~aA~-~~G 179 (185)
T TIGR02009 144 ------------------------------------HPETF-----LLAAELLGV-SPNECVVFEDAL-AGVQAAR-AAG 179 (185)
T ss_pred ------------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHH-HCC
Confidence 01122 235555676 578999999995 7987777 559
Q ss_pred ceEEEe
Q 019576 190 WRTMLV 195 (339)
Q Consensus 190 WrT~~I 195 (339)
|+|++|
T Consensus 180 ~~~i~v 185 (185)
T TIGR02009 180 MFAVAV 185 (185)
T ss_pred CeEeeC
Confidence 999875
No 33
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.70 E-value=5.1e-05 Score=67.06 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=68.7
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+...|.+..+|++|+ +++.++||++-.++...+..+ .+.++||.|++...-..-.. ..+|
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~--------------gl~~~fd~i~~~~~~~~~~~--~~KP- 142 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL--------------GIEDCFDGIFCFDTANPDYL--LPKP- 142 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc--------------CcHhhhCeEEEeecccCccC--CCCC-
Confidence 445678889999997 479999999998888888765 36789999887643210000 0000
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+.+|. ...+++||||+. .||..++ ..|
T Consensus 143 ------------------------------------~p~~~-----~~~~~~~~~-~~~~~l~vgD~~-~di~aA~-~~G 178 (184)
T TIGR01993 143 ------------------------------------SPQAY-----EKALREAGV-DPERAIFFDDSA-RNIAAAK-ALG 178 (184)
T ss_pred ------------------------------------CHHHH-----HHHHHHhCC-CccceEEEeCCH-HHHHHHH-HcC
Confidence 01122 234455676 678999999997 5866555 669
Q ss_pred ceEEEe
Q 019576 190 WRTMLV 195 (339)
Q Consensus 190 WrT~~I 195 (339)
++|++|
T Consensus 179 ~~~i~v 184 (184)
T TIGR01993 179 MKTVLV 184 (184)
T ss_pred CEEeeC
Confidence 999875
No 34
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.69 E-value=0.00011 Score=66.39 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=76.9
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|.+...|+++++. .++.++||+.-.++.....-+- -.++||.|++....- +. +|
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~g--------------l~~~Fd~v~~s~~~g--~~----KP- 155 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLG--------------LLDYFDAVFISEDVG--VA----KP- 155 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcC--------------ChhhhheEEEecccc--cC----CC-
Confidence 44457888888888888 8899999997777777776651 478999998765422 00 11
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ...++.+|. ...++|+|||++..||.-++ ..|
T Consensus 156 ------------------------------------~~~~f-----~~~~~~~g~-~p~~~l~VgD~~~~di~gA~-~~G 192 (229)
T COG1011 156 ------------------------------------DPEIF-----EYALEKLGV-PPEEALFVGDSLENDILGAR-ALG 192 (229)
T ss_pred ------------------------------------CcHHH-----HHHHHHcCC-CcceEEEECCChhhhhHHHH-hcC
Confidence 11233 236677776 57899999999999986666 669
Q ss_pred ceEEEechhcH
Q 019576 190 WRTMLVVPELE 200 (339)
Q Consensus 190 WrT~~IIpEL~ 200 (339)
|+|+.|.++-.
T Consensus 193 ~~~vwi~~~~~ 203 (229)
T COG1011 193 MKTVWINRGGK 203 (229)
T ss_pred cEEEEECCCCC
Confidence 99999887653
No 35
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.65 E-value=8.8e-05 Score=66.84 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=71.7
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCC-ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS-~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
-|.+..+|+.|+++|.+++++||+ .-.++..+|.++--.. ..+...--+|||.||+.. +| .. ..|.-.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~-----~~~~~~~~~~Fd~iv~~~-~~---~~--~kp~~~ 115 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITY-----AGKTVPMHSLFDDRIEIY-KP---NK--AKQLEM 115 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCC-----CCCcccHHHhceeeeecc-CC---ch--HHHHHH
Confidence 478899999999999999999999 8999999988752100 011223338999988853 22 00 011000
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh--ccccCCcEEEEcccccccccccccccC
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL--SIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll--~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
+ +..+.+.+ |. ...+++||||... ||. +-+..|
T Consensus 116 -------------------------------------i-----~~~~~~~~~~gl-~p~e~l~VgDs~~-di~-aA~~aG 150 (174)
T TIGR01685 116 -------------------------------------I-----LQKVNKVDPSVL-KPAQILFFDDRTD-NVR-EVWGYG 150 (174)
T ss_pred -------------------------------------H-----HHHhhhcccCCC-CHHHeEEEcChhH-hHH-HHHHhC
Confidence 0 11122222 33 4689999999995 554 455789
Q ss_pred ceEEEechh
Q 019576 190 WRTMLVVPE 198 (339)
Q Consensus 190 WrT~~IIpE 198 (339)
++|++|..-
T Consensus 151 i~~i~v~~g 159 (174)
T TIGR01685 151 VTSCYCPSG 159 (174)
T ss_pred CEEEEcCCC
Confidence 999999553
No 36
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.65 E-value=0.0001 Score=65.39 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=33.5
Q ss_pred HHHHHhccccCCcEEEEcccccccccccccccCceEEEechhcH
Q 019576 157 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 200 (339)
Q Consensus 157 ~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~ 200 (339)
..++-++. ...+++||||+++.||..++ ..||+|++|-+--.
T Consensus 99 ~~l~~~~~-~~~~~l~IGDs~~~Di~aA~-~aGi~~i~v~~g~~ 140 (170)
T TIGR01668 99 RAHPEMGL-TSEQVAVVGDRLFTDVMGGN-RNGSYTILVEPLVH 140 (170)
T ss_pred HHHHHcCC-CHHHEEEECCcchHHHHHHH-HcCCeEEEEccCcC
Confidence 34555665 57899999999999988887 55999999977653
No 37
>PLN02811 hydrolase
Probab=97.64 E-value=0.00015 Score=66.29 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcceee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 112 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v 112 (339)
-|.+..+|+.|++.|.++.++||+.-.+....+.-. ..|.++||.|++... |..-. .+|
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~-------------~~l~~~f~~i~~~~~-~~~~~---~KP---- 138 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH-------------GELFSLMHHVVTGDD-PEVKQ---GKP---- 138 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc-------------HHHHhhCCEEEECCh-hhccC---CCC----
Confidence 378889999999999999999999876543322111 247889999887541 10000 001
Q ss_pred cCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhc---cccCCcEEEEcccccccccccccccC
Q 019576 113 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS---IESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 113 ~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~---~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+.++ . ...+++||||+. .||..++ ..|
T Consensus 139 ---------------------------------~p~~~-----~~a~~~~~~~~~-~~~~~v~IgDs~-~di~aA~-~aG 177 (220)
T PLN02811 139 ---------------------------------APDIF-----LAAARRFEDGPV-DPGKVLVFEDAP-SGVEAAK-NAG 177 (220)
T ss_pred ---------------------------------CcHHH-----HHHHHHhCCCCC-CccceEEEeccH-hhHHHHH-HCC
Confidence 01122 11223333 4 468999999998 5866555 669
Q ss_pred ceEEEech
Q 019576 190 WRTMLVVP 197 (339)
Q Consensus 190 WrT~~IIp 197 (339)
++|++|-.
T Consensus 178 ~~~i~v~~ 185 (220)
T PLN02811 178 MSVVMVPD 185 (220)
T ss_pred CeEEEEeC
Confidence 99999954
No 38
>PLN02940 riboflavin kinase
Probab=97.64 E-value=0.00011 Score=73.44 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=73.5
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|.+..+|+.|+++|.++.++||+.-.+++..+.-.+ .|.+|||.|++...-. ..+|
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~-------------gl~~~Fd~ii~~d~v~------~~KP--- 151 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQ-------------GWKESFSVIVGGDEVE------KGKP--- 151 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcc-------------ChHhhCCEEEehhhcC------CCCC---
Confidence 35889999999999999999999999988887665332 4899999998854210 0011
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+| ...++.+|. ...++++|||.. .||..++ ..|++
T Consensus 152 ----------------------------------~p~~~-----~~a~~~lgv-~p~~~l~VGDs~-~Di~aA~-~aGi~ 189 (382)
T PLN02940 152 ----------------------------------SPDIF-----LEAAKRLNV-EPSNCLVIEDSL-PGVMAGK-AAGME 189 (382)
T ss_pred ----------------------------------CHHHH-----HHHHHHcCC-ChhHEEEEeCCH-HHHHHHH-HcCCE
Confidence 01122 234555676 678999999997 5976666 66999
Q ss_pred EEEec
Q 019576 192 TMLVV 196 (339)
Q Consensus 192 T~~II 196 (339)
+++|-
T Consensus 190 ~I~v~ 194 (382)
T PLN02940 190 VIAVP 194 (382)
T ss_pred EEEEC
Confidence 99985
No 39
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.64 E-value=0.00023 Score=67.77 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=73.4
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcce
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 110 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~ 110 (339)
..-|.+..+|+.|+++|.++.++||++-.+...++..+ .|..+||.|++...-|. .+|
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~--------------~i~~~f~~i~~~d~~~~------~Kp-- 158 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM--------------KIGRYFRWIIGGDTLPQ------KKP-- 158 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc--------------CcHhhCeEEEecCCCCC------CCC--
Confidence 34588999999999999999999999988777777653 36788998766421000 000
Q ss_pred eecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCc
Q 019576 111 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 190 (339)
Q Consensus 111 ~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gW 190 (339)
+ ..-...+.+.+|. ...+++||||+ ..||...+. .||
T Consensus 159 -----------------------------------~-----p~~~~~~~~~~g~-~~~~~l~IGD~-~~Di~aA~~-aGi 195 (272)
T PRK13223 159 -----------------------------------D-----PAALLFVMKMAGV-PPSQSLFVGDS-RSDVLAAKA-AGV 195 (272)
T ss_pred -----------------------------------C-----cHHHHHHHHHhCC-ChhHEEEECCC-HHHHHHHHH-CCC
Confidence 0 1122345666676 67899999999 599887775 699
Q ss_pred eEEEech
Q 019576 191 RTMLVVP 197 (339)
Q Consensus 191 rT~~IIp 197 (339)
+|++|.-
T Consensus 196 ~~i~v~~ 202 (272)
T PRK13223 196 QCVALSY 202 (272)
T ss_pred eEEEEec
Confidence 9999853
No 40
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.61 E-value=0.00037 Score=62.94 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.1
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
...-|.+..+|+.|+++|.++.++||+.-.+...++..+ .|.++||.|++...-+ . .+
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~--~k-- 149 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL--------------GIADYFSVVIGGDSLP----N--KK-- 149 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCccCccEEEcCCCCC----C--CC--
Confidence 345688999999999999999999999998888777654 3667899876532100 0 00
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
..+. ....+.+.++. ...+++||||.. .||-..+. .|
T Consensus 150 -----------------------------------p~~~-----~~~~~~~~~~~-~~~~~i~igD~~-~Di~~a~~-~g 186 (226)
T PRK13222 150 -----------------------------------PDPA-----PLLLACEKLGL-DPEEMLFVGDSR-NDIQAARA-AG 186 (226)
T ss_pred -----------------------------------cChH-----HHHHHHHHcCC-ChhheEEECCCH-HHHHHHHH-CC
Confidence 0011 13345555665 578999999995 89877774 59
Q ss_pred ceEEEech
Q 019576 190 WRTMLVVP 197 (339)
Q Consensus 190 WrT~~IIp 197 (339)
|.|++|..
T Consensus 187 ~~~i~v~~ 194 (226)
T PRK13222 187 CPSVGVTY 194 (226)
T ss_pred CcEEEECc
Confidence 99999863
No 41
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.55 E-value=0.00038 Score=65.57 Aligned_cols=104 Identities=16% Similarity=0.080 Sum_probs=71.3
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccC-ccEEEEccCCCCCCcCCCCCc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLY-FDVVITGSAKPGFFHEDNRAN 108 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~-FDvVIv~A~KP~FF~~~~~~~ 108 (339)
+..-|....+|+.|+++|.++.++||+.-..++.++.-+- ..++ ||.|++...-+ ..+|
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~--------------l~~~~~d~i~~~~~~~------~~KP 159 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAA--------------AQGYRPDHVVTTDDVP------AGRP 159 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHh--------------hcCCCceEEEcCCcCC------CCCC
Confidence 4456889999999999999999999999999888876541 2344 47776543200 0011
Q ss_pred ceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccccc
Q 019576 109 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 188 (339)
Q Consensus 109 ~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~ 188 (339)
...+| ....+-+|.....+++||||.. .||..++ ..
T Consensus 160 -------------------------------------~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~-~a 195 (267)
T PRK13478 160 -------------------------------------YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGL-NA 195 (267)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHH-HC
Confidence 01122 2344555652246899999998 8987776 56
Q ss_pred CceEEEech
Q 019576 189 GWRTMLVVP 197 (339)
Q Consensus 189 gWrT~~IIp 197 (339)
|++|++|..
T Consensus 196 G~~~i~v~~ 204 (267)
T PRK13478 196 GMWTVGVIL 204 (267)
T ss_pred CCEEEEEcc
Confidence 999999975
No 42
>PRK11587 putative phosphatase; Provisional
Probab=97.53 E-value=0.00028 Score=64.34 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=66.9
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcce
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 110 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~ 110 (339)
..-|.+..+|+.|+++|.++.++||+...++....... | ..+||.|++...- .. .+|
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~-~--------------l~~~~~i~~~~~~----~~--~KP-- 139 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA-G--------------LPAPEVFVTAERV----KR--GKP-- 139 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc-C--------------CCCccEEEEHHHh----cC--CCC--
Confidence 33588999999999999999999999988776554322 2 2457776653210 00 011
Q ss_pred eecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCc
Q 019576 111 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 190 (339)
Q Consensus 111 ~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gW 190 (339)
...+| ....+.+|. ...+++||||+. .||..++ ..|+
T Consensus 140 -----------------------------------~p~~~-----~~~~~~~g~-~p~~~l~igDs~-~di~aA~-~aG~ 176 (218)
T PRK11587 140 -----------------------------------EPDAY-----LLGAQLLGL-APQECVVVEDAP-AGVLSGL-AAGC 176 (218)
T ss_pred -----------------------------------CcHHH-----HHHHHHcCC-CcccEEEEecch-hhhHHHH-HCCC
Confidence 01122 123455676 679999999996 6776555 6699
Q ss_pred eEEEech
Q 019576 191 RTMLVVP 197 (339)
Q Consensus 191 rT~~IIp 197 (339)
.|++|-.
T Consensus 177 ~~i~v~~ 183 (218)
T PRK11587 177 HVIAVNA 183 (218)
T ss_pred EEEEECC
Confidence 9999853
No 43
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.50 E-value=0.00019 Score=63.55 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred ccccCCChHHHHHHHHHcCCeEEEeeCCC---------------hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 019576 29 YINEDRSIVPMLKMLRESGRSTFLVTNSL---------------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 93 (339)
Q Consensus 29 Yi~kd~~l~~~L~~lr~~GKklFLiTNS~---------------~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv 93 (339)
.+..-|.+..+|+.|+++|.+++++||.. ..+++.+...+ .+. ||-+++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~--------------gl~--fd~ii~ 90 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ--------------GII--FDDVLI 90 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC--------------CCc--eeEEEE
Confidence 45556889999999999999999999963 23333333322 233 876665
Q ss_pred ccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEE
Q 019576 94 GSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYV 173 (339)
Q Consensus 94 ~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~ 173 (339)
.+.+|. +. . +..+ .+ -+-+..+.+.++. ...+++||
T Consensus 91 ~~~~~~---~~--~---------~~~K------------------------P~-----~~~~~~~~~~~~~-~~~e~l~I 126 (161)
T TIGR01261 91 CPHFPD---DN--C---------DCRK------------------------PK-----IKLLEPYLKKNLI-DKARSYVI 126 (161)
T ss_pred CCCCCC---CC--C---------CCCC------------------------CC-----HHHHHHHHHHcCC-CHHHeEEE
Confidence 533331 10 0 0000 00 1223345555665 56899999
Q ss_pred cccccccccccccccCceEEEech
Q 019576 174 GDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 174 GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
||. ..||..++ ..||.|++|-+
T Consensus 127 GD~-~~Di~~A~-~aGi~~i~~~~ 148 (161)
T TIGR01261 127 GDR-ETDMQLAE-NLGIRGIQYDE 148 (161)
T ss_pred eCC-HHHHHHHH-HCCCeEEEECh
Confidence 998 67987766 66999999864
No 44
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.45 E-value=0.00013 Score=67.81 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=67.3
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
+..-|.+..+|+.||+. .++.++||+... +. . ..+.+|||.|++...-. ..+|
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~-~-------------~gl~~~fd~i~~~~~~~------~~KP- 164 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PE-L-------------FGLGDYFEFVLRAGPHG------RSKP- 164 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HH-H-------------CCcHHhhceeEecccCC------cCCC-
Confidence 44457899999999876 789999998764 11 1 24688999888654210 0011
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
...+| ....+.+|. ...+++||||++..||..++ ..|
T Consensus 165 ------------------------------------~p~~~-----~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~-~aG 201 (238)
T PRK10748 165 ------------------------------------FSDMY-----HLAAEKLNV-PIGEILHVGDDLTTDVAGAI-RCG 201 (238)
T ss_pred ------------------------------------cHHHH-----HHHHHHcCC-ChhHEEEEcCCcHHHHHHHH-HCC
Confidence 01122 123344565 57899999999999998877 569
Q ss_pred ceEEEechh
Q 019576 190 WRTMLVVPE 198 (339)
Q Consensus 190 WrT~~IIpE 198 (339)
|+|+.|-+.
T Consensus 202 ~~~i~v~~~ 210 (238)
T PRK10748 202 MQACWINPE 210 (238)
T ss_pred CeEEEEcCC
Confidence 999998664
No 45
>PRK06769 hypothetical protein; Validated
Probab=97.41 E-value=0.00024 Score=63.20 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHhccccCCcEEEEcccccccccccccccCceEEEechhc
Q 019576 156 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 199 (339)
Q Consensus 156 ~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL 199 (339)
...++.++. ...+++||||+. .||..++ ..||+|++|-+.-
T Consensus 100 ~~~~~~l~~-~p~~~i~IGD~~-~Di~aA~-~aGi~~i~v~~g~ 140 (173)
T PRK06769 100 LQAAEKHGL-DLTQCAVIGDRW-TDIVAAA-KVNATTILVRTGA 140 (173)
T ss_pred HHHHHHcCC-CHHHeEEEcCCH-HHHHHHH-HCCCeEEEEecCC
Confidence 345555665 568999999997 8987777 5599999997643
No 46
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.29 E-value=0.00032 Score=61.72 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=65.8
Q ss_pred hHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcceeecCC
Q 019576 36 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPE 115 (339)
Q Consensus 36 l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~ 115 (339)
...+|..|++. .++.|+||+.-.+++..+..+ .|.+|||.|++...-. . .+|
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~----~--~KP------- 143 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHL--------------GLRRYFDAVVAADDVQ----H--HKP------- 143 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC--------------CcHhHceEEEehhhcc----C--CCC-------
Confidence 35788888765 799999999999999888775 4789999988853210 0 011
Q ss_pred CCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCceEEEe
Q 019576 116 SGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 195 (339)
Q Consensus 116 tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~I 195 (339)
...+| ....+.++. ...+++||||. ..||..++ ..||+|++|
T Consensus 144 ------------------------------~p~~~-----~~~~~~~~~-~~~~~l~igDs-~~di~aA~-~aG~~~i~~ 185 (188)
T PRK10725 144 ------------------------------APDTF-----LRCAQLMGV-QPTQCVVFEDA-DFGIQAAR-AAGMDAVDV 185 (188)
T ss_pred ------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEecc-HhhHHHHH-HCCCEEEee
Confidence 00011 223444565 46899999998 78876666 669999987
Q ss_pred c
Q 019576 196 V 196 (339)
Q Consensus 196 I 196 (339)
-
T Consensus 186 ~ 186 (188)
T PRK10725 186 R 186 (188)
T ss_pred c
Confidence 3
No 47
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.27 E-value=0.00062 Score=58.09 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 94 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~ 94 (339)
.|.+..+|+.|+++|.++.++||+....+...+.+.+ .++|+.|++.
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l---------------~~~f~~i~~~ 112 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHL---------------GDYFDLILGS 112 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHH---------------HhcCcEEEec
Confidence 4789999999999999999999999999999998862 3468887753
No 48
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.23 E-value=0.00098 Score=59.17 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHhccccCCcEEEEcccccccccccccccCceEEEech
Q 019576 158 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 158 l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
..+.+|. ...+++||||+. .||..++ ..||++++|-.
T Consensus 112 ~~~~l~~-~~~~~~~VgDs~-~Di~~A~-~aG~~~i~v~~ 148 (181)
T PRK08942 112 IAERLNI-DLAGSPMVGDSL-RDLQAAA-AAGVTPVLVRT 148 (181)
T ss_pred HHHHcCC-ChhhEEEEeCCH-HHHHHHH-HCCCeEEEEcC
Confidence 5556676 578999999997 5987777 56998888854
No 49
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.17 E-value=0.00028 Score=66.70 Aligned_cols=99 Identities=29% Similarity=0.461 Sum_probs=66.9
Q ss_pred cccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccC----CCCCCcC
Q 019576 28 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFFHE 103 (339)
Q Consensus 28 kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~----KP~FF~~ 103 (339)
-|..-++ ...+|++||+.| +.|.+||.||.--....=.+| =..|||.||+++. || +
T Consensus 111 ~~~~~~~-~~~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~-------------l~~~fD~vv~S~e~g~~KP----D 170 (237)
T KOG3085|consen 111 AWKYLDG-MQELLQKLRKKG--TILGIISNFDDRLRLLLLPLG-------------LSAYFDFVVESCEVGLEKP----D 170 (237)
T ss_pred CceeccH-HHHHHHHHHhCC--eEEEEecCCcHHHHHHhhccC-------------HHHhhhhhhhhhhhccCCC----C
Confidence 3334444 449999999999 556666666654443333333 2389999998763 33 1
Q ss_pred CCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccc
Q 019576 104 DNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILR 183 (339)
Q Consensus 104 ~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~ 183 (339)
.+||+ ..++.++. ...+|+++||..--|+-.
T Consensus 171 -------------------------------------------p~If~-----~al~~l~v-~Pee~vhIgD~l~nD~~g 201 (237)
T KOG3085|consen 171 -------------------------------------------PRIFQ-----LALERLGV-KPEECVHIGDLLENDYEG 201 (237)
T ss_pred -------------------------------------------hHHHH-----HHHHHhCC-ChHHeEEecCccccccHh
Confidence 12442 25566676 578999999999999655
Q ss_pred cccccCceEEEec
Q 019576 184 SKKVLGWRTMLVV 196 (339)
Q Consensus 184 skk~~gWrT~~II 196 (339)
++ ..||+|.+|.
T Consensus 202 A~-~~G~~ailv~ 213 (237)
T KOG3085|consen 202 AR-NLGWHAILVD 213 (237)
T ss_pred HH-HcCCEEEEEc
Confidence 55 7799999998
No 50
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.17 E-value=0.0014 Score=66.84 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=70.5
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCccee
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.-|....+|+.||+.|.++.++||+.-.++...++++ +|.+|||.|++.-.-+. . ..|
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~--------------~l~~~f~~i~~~d~v~~---~--~kP--- 388 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY--------------DLDQWVTETFSIEQINS---L--NKS--- 388 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC--------------CcHhhcceeEecCCCCC---C--CCc---
Confidence 3588899999999999999999999999999998864 47889999886432000 0 001
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
.+| ....+-+ ...+++||||+. .||...+ ..|++
T Consensus 389 ------------------------------------~~~-----~~al~~l---~~~~~v~VGDs~-~Di~aAk-~AG~~ 422 (459)
T PRK06698 389 ------------------------------------DLV-----KSILNKY---DIKEAAVVGDRL-SDINAAK-DNGLI 422 (459)
T ss_pred ------------------------------------HHH-----HHHHHhc---CcceEEEEeCCH-HHHHHHH-HCCCe
Confidence 011 1111112 246899999997 8987776 66999
Q ss_pred EEEech
Q 019576 192 TMLVVP 197 (339)
Q Consensus 192 T~~IIp 197 (339)
|++|-.
T Consensus 423 ~I~v~~ 428 (459)
T PRK06698 423 AIGCNF 428 (459)
T ss_pred EEEEeC
Confidence 999855
No 51
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.16 E-value=0.0021 Score=55.32 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=29.9
Q ss_pred HHHHHHhccccCCcEEEEcccccccccccccccCceEEEec
Q 019576 156 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 196 (339)
Q Consensus 156 ~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~II 196 (339)
..+++.++. ...+++||||+ ..||..++ ..||+|++|.
T Consensus 108 ~~~~~~~~~-~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 108 LEALKRLGV-DASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred HHHHHHcCC-ChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 445566676 57899999999 88977775 6799999885
No 52
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.12 E-value=0.0011 Score=60.14 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=68.0
Q ss_pred cccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCcc-EEEEccCCCCCCcCCCC
Q 019576 28 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFD-VVITGSAKPGFFHEDNR 106 (339)
Q Consensus 28 kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FD-vVIv~A~KP~FF~~~~~ 106 (339)
..+...|.+..+|+.| +.++.++||+.-.+++..+..+ +..++|| +|++...-. . .
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~--------------~l~~~F~~~v~~~~~~~---~---~ 141 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT--------------GMLHYFPDKLFSGYDIQ---R---W 141 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc--------------ChHHhCcceEeeHHhcC---C---C
Confidence 3455678999999998 3799999999988888877544 4578896 555432100 0 0
Q ss_pred CcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccc
Q 019576 107 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 186 (339)
Q Consensus 107 ~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk 186 (339)
+| ...+| ....+-++. ...+++||||.. .||..++
T Consensus 142 KP-------------------------------------~p~~~-----~~a~~~~~~-~p~~~l~igDs~-~di~aA~- 176 (221)
T PRK10563 142 KP-------------------------------------DPALM-----FHAAEAMNV-NVENCILVDDSS-AGAQSGI- 176 (221)
T ss_pred CC-------------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHH-
Confidence 11 01122 224455666 578999999998 6877666
Q ss_pred ccCceEEEec
Q 019576 187 VLGWRTMLVV 196 (339)
Q Consensus 187 ~~gWrT~~II 196 (339)
..|++|+++.
T Consensus 177 ~aG~~~i~~~ 186 (221)
T PRK10563 177 AAGMEVFYFC 186 (221)
T ss_pred HCCCEEEEEC
Confidence 6799999885
No 53
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.00 E-value=0.0026 Score=58.38 Aligned_cols=103 Identities=25% Similarity=0.295 Sum_probs=74.1
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 109 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~ 109 (339)
....|.++.+|..|+++|.+++++||-+-.+++.+... +| +.+|||+|++... ++.. +|
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~-~g-------------l~~~F~~i~g~~~---~~~~---KP- 146 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKA-LG-------------LADYFDVIVGGDD---VPPP---KP- 146 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH-hC-------------CccccceEEcCCC---CCCC---Cc-
Confidence 45679999999999999999999999999999999988 34 5889999998221 1111 11
Q ss_pred eeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccC
Q 019576 110 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 189 (339)
Q Consensus 110 ~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~g 189 (339)
++ . ....+++.++. ...++|||||.++ ||...+.. |
T Consensus 147 ---~P----------------~----------------------~l~~~~~~~~~-~~~~~l~VGDs~~-Di~aA~~A-g 182 (220)
T COG0546 147 ---DP----------------E----------------------PLLLLLEKLGL-DPEEALMVGDSLN-DILAAKAA-G 182 (220)
T ss_pred ---CH----------------H----------------------HHHHHHHHhCC-ChhheEEECCCHH-HHHHHHHc-C
Confidence 00 0 01224555665 3459999999986 88877755 5
Q ss_pred ceEEEech
Q 019576 190 WRTMLVVP 197 (339)
Q Consensus 190 WrT~~IIp 197 (339)
-.|++|--
T Consensus 183 ~~~v~v~~ 190 (220)
T COG0546 183 VPAVGVTW 190 (220)
T ss_pred CCEEEEEC
Confidence 77777644
No 54
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.97 E-value=0.0026 Score=56.30 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
-|.+..+|..|+++|.++.++||++-
T Consensus 28 ~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 28 IDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999999999999999999983
No 55
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.91 E-value=0.0026 Score=56.99 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 019576 37 VPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 95 (339)
Q Consensus 37 ~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A 95 (339)
..+|+.|++.|.++.++||++-.++..++..+ .|..|||.|++..
T Consensus 112 ~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~--------------gl~~~f~~~~~~~ 156 (197)
T TIGR01548 112 KGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH--------------GLEILFPVQIWME 156 (197)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc--------------CchhhCCEEEeec
Confidence 78999999999999999999999999888765 3678999888743
No 56
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.41 E-value=0.0088 Score=53.13 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.8
Q ss_pred CcccccccCCChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 25 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 25 np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
+|++....-|.+..+|++|+++|.++.++||.+-
T Consensus 36 ~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 36 SASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred ChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4555444458899999999999999999999865
No 57
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.32 E-value=0.00067 Score=64.14 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=30.4
Q ss_pred HHHhccccCCcEEEEcccccccccccccccCceEEEechh
Q 019576 159 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 198 (339)
Q Consensus 159 ~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpE 198 (339)
.+.++. ...++++|||++..||.-.+ ..||+|++|..-
T Consensus 189 ~~~~~~-~~~~~~~vGD~~~~Di~~a~-~~G~~~i~v~~G 226 (257)
T TIGR01458 189 LRATGC-EPEEAVMIGDDCRDDVGGAQ-DCGMRGIQVRTG 226 (257)
T ss_pred HHHhCC-ChhhEEEECCCcHHHHHHHH-HcCCeEEEECCC
Confidence 344565 57899999999999988777 559999999643
No 58
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.13 E-value=0.012 Score=66.42 Aligned_cols=102 Identities=15% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCC-ccCccEEEEccCCCCCCcCCCCCccee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW-LLYFDVVITGSAKPGFFHEDNRANLFQ 111 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~W-r~~FDvVIv~A~KP~FF~~~~~~~~~~ 111 (339)
.|.+..+|+.|+++|.++.++||+.-.+++.++..+ .| ..|||.|++...-. . .+|
T Consensus 163 ~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~--------------gl~~~~Fd~iv~~~~~~----~--~KP--- 219 (1057)
T PLN02919 163 FPGALELITQCKNKGLKVAVASSADRIKVDANLAAA--------------GLPLSMFDAIVSADAFE----N--LKP--- 219 (1057)
T ss_pred CccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc--------------CCChhHCCEEEECcccc----c--CCC---
Confidence 588999999999999999999999999999888664 35 47899988653100 0 001
Q ss_pred ecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCce
Q 019576 112 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 191 (339)
Q Consensus 112 v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWr 191 (339)
...+| ....+.++. ...+++||||.. .||..++ ..||+
T Consensus 220 ----------------------------------~Pe~~-----~~a~~~lgv-~p~e~v~IgDs~-~Di~AA~-~aGm~ 257 (1057)
T PLN02919 220 ----------------------------------APDIF-----LAAAKILGV-PTSECVVIEDAL-AGVQAAR-AAGMR 257 (1057)
T ss_pred ----------------------------------CHHHH-----HHHHHHcCc-CcccEEEEcCCH-HHHHHHH-HcCCE
Confidence 11233 234556676 678999999997 5866555 66999
Q ss_pred EEEechhc
Q 019576 192 TMLVVPEL 199 (339)
Q Consensus 192 T~~IIpEL 199 (339)
|++|....
T Consensus 258 ~I~v~~~~ 265 (1057)
T PLN02919 258 CIAVTTTL 265 (1057)
T ss_pred EEEECCCC
Confidence 99998764
No 59
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.98 E-value=0.029 Score=49.50 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=34.8
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+...|....+|+.|+++|.+++++||+.-.+++.++..+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 117 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL 117 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh
Confidence 344688999999999999999999999999999998776
No 60
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.94 E-value=0.012 Score=52.44 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=62.3
Q ss_pred ccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh-ccCCCCCCCCCCCCCCccCccEEEEccC-CCCCCcCCCC
Q 019576 29 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL-CGSHTLDGGITCNSDWLLYFDVVITGSA-KPGFFHEDNR 106 (339)
Q Consensus 29 Yi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl-~g~~~~~~~~~~~~~Wr~~FDvVIv~A~-KP~FF~~~~~ 106 (339)
.+..-|....+|++|++.+ +++++||..-.........+ +. .-|-++|+.||+... ||
T Consensus 72 ~~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~-----------~~f~~~f~~i~~~~~~~~-------- 131 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN-----------ALFPGAFSEVLMCGHDES-------- 131 (197)
T ss_pred hccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH-----------HhCCCcccEEEEeccCcc--------
Confidence 3445688999999999987 47788997665555444332 22 123346776665433 21
Q ss_pred CcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccccc
Q 019576 107 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 186 (339)
Q Consensus 107 ~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk 186 (339)
.| .+ .....+.+| ..+++||||...+ |..++.
T Consensus 132 kp---------------------------------------~~-----~~~a~~~~~---~~~~v~vgDs~~d-i~aA~~ 163 (197)
T PHA02597 132 KE---------------------------------------KL-----FIKAKEKYG---DRVVCFVDDLAHN-LDAAHE 163 (197)
T ss_pred cH---------------------------------------HH-----HHHHHHHhC---CCcEEEeCCCHHH-HHHHHH
Confidence 01 00 111223333 3568999999987 666665
Q ss_pred cc-CceEEEechh
Q 019576 187 VL-GWRTMLVVPE 198 (339)
Q Consensus 187 ~~-gWrT~~IIpE 198 (339)
.. |+.|+.|-..
T Consensus 164 a~~Gi~~i~~~~~ 176 (197)
T PHA02597 164 ALSQLPVIHMLRG 176 (197)
T ss_pred HHcCCcEEEecch
Confidence 33 9999999655
No 61
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.92 E-value=0.029 Score=56.03 Aligned_cols=110 Identities=18% Similarity=0.233 Sum_probs=65.8
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCC----hhhh-------HHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSL----WDYT-------TIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 98 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~----~~yt-------~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP 98 (339)
+...|.+..+|..|+++|.+++++||.+ -.|. +..|.-++.. ..+ +||.|+..+..|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~----------~gl--~fd~i~i~~~~~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES----------QGI--KFDEVLICPHFP 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH----------cCC--ceeeEEEeCCcC
Confidence 5557899999999999999999999951 1111 1123333331 122 377776655333
Q ss_pred CCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccc
Q 019576 99 GFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIY 178 (339)
Q Consensus 99 ~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~ 178 (339)
++. .. .++ .+ -+-+..+.+.++. ...+++||||..
T Consensus 97 ---sd~--~~-------~rK--------------------------P~-----p~~l~~a~~~l~v-~~~~svmIGDs~- 131 (354)
T PRK05446 97 ---EDN--CS-------CRK--------------------------PK-----TGLVEEYLAEGAI-DLANSYVIGDRE- 131 (354)
T ss_pred ---ccc--CC-------CCC--------------------------CC-----HHHHHHHHHHcCC-CcccEEEEcCCH-
Confidence 110 00 000 00 1112334444555 568999999985
Q ss_pred ccccccccccCceEEEech
Q 019576 179 GDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 179 ~Di~~skk~~gWrT~~IIp 197 (339)
+|+..++ ..|+++++|=|
T Consensus 132 sDi~aAk-~aGi~~I~v~~ 149 (354)
T PRK05446 132 TDVQLAE-NMGIKGIRYAR 149 (354)
T ss_pred HHHHHHH-HCCCeEEEEEC
Confidence 8987777 66999999844
No 62
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=95.86 E-value=0.067 Score=48.82 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=40.9
Q ss_pred hHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhc
Q 019576 19 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 69 (339)
Q Consensus 19 k~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 69 (339)
++++.+-..+-+...|.+..+|+.|+++|.+++++||+.-.|+..++..++
T Consensus 62 ~~~~~~~~~~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 62 KEEIIQFLLETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred hHHHHHHHHhCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 344444333335567899999999999999999999999999999998773
No 63
>PLN02954 phosphoserine phosphatase
Probab=95.83 E-value=0.08 Score=47.94 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=34.0
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
..|.+..+|+.|+++|.++.++||+.-.+++.++..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4689999999999999999999999999999998864
No 64
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.043 Score=52.94 Aligned_cols=32 Identities=44% Similarity=0.638 Sum_probs=27.0
Q ss_pred CCcEEEEcccccccccccccccCceEEEechhc
Q 019576 167 SSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 199 (339)
Q Consensus 167 g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL 199 (339)
.+++|-|||.+..||.-.+ ..||.|++|.==.
T Consensus 207 ~~~~~mVGD~~~TDI~~a~-~~G~~t~LV~TGv 238 (269)
T COG0647 207 RSEVLMVGDRLDTDILGAK-AAGLDTLLVLTGV 238 (269)
T ss_pred cccEEEEcCCchhhHHHHH-HcCCCEEEEccCC
Confidence 3699999999999998877 5699999995433
No 65
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.73 E-value=0.04 Score=49.75 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred cccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 28 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 28 kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+.+...|..+.+|+.|+++|.++.++||+.-.++..++..+
T Consensus 82 ~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 82 ENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred hcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 34556789999999999999999999999999988888764
No 66
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.64 E-value=0.0019 Score=61.49 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=31.0
Q ss_pred HHHHhccccCCcEEEEcccccccccccccccCceEEEech
Q 019576 158 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 158 l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
+.+.++. ...+++||||.+..||.-++ ..||+|++|--
T Consensus 211 ~~~~~~~-~~~~~lmIGD~~~tDI~~A~-~aGi~si~V~~ 248 (279)
T TIGR01452 211 ITENFSI-DPARTLMVGDRLETDILFGH-RCGMTTVLVLS 248 (279)
T ss_pred HHHHhCC-ChhhEEEECCChHHHHHHHH-HcCCcEEEECC
Confidence 4455665 57899999999999998877 46999999953
No 67
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=95.21 E-value=0.016 Score=49.11 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHcCCeEEEeeCC-ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 98 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS-~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP 98 (339)
|.+..+|+.|+++|.++.++||+ .-.++..++... |.+. .-..+.++||.++++..||
T Consensus 32 ~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~~~------~i~~l~~~f~~~~~~~~~p 90 (128)
T TIGR01681 32 KEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-EDFG------IIFPLAEYFDPLTIGYWLP 90 (128)
T ss_pred HHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cccc------cchhhHhhhhhhhhcCCCc
Confidence 68889999999999999999999 899998888764 2100 0011688999988875554
No 68
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=95.03 E-value=0.04 Score=53.66 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=50.2
Q ss_pred ccCChhhHHHHhCcccc-cc---cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHh---hccCCCCCCCCCCCCCCc
Q 019576 13 HRDGTLKQMVAKDPKTY-IN---EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF---LCGSHTLDGGITCNSDWL 85 (339)
Q Consensus 13 H~~G~lk~~v~~np~kY-i~---kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y---l~g~~~~~~~~~~~~~Wr 85 (339)
+.|++|..-|..+-+-. |. .-|.+..+|+.|++.|.++.++||.+...+..++.. ++| -.
T Consensus 9 DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~-------------~~ 75 (320)
T TIGR01686 9 DLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL-------------QA 75 (320)
T ss_pred cCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC-------------cH
Confidence 44566665554444333 11 235788999999999999999999999999999886 233 35
Q ss_pred cCccEEEEc
Q 019576 86 LYFDVVITG 94 (339)
Q Consensus 86 ~~FDvVIv~ 94 (339)
++|+.|+..
T Consensus 76 ~~f~~~~~~ 84 (320)
T TIGR01686 76 EDFDARSIN 84 (320)
T ss_pred HHeeEEEEe
Confidence 789988665
No 69
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.93 E-value=0.005 Score=57.29 Aligned_cols=38 Identities=39% Similarity=0.475 Sum_probs=28.3
Q ss_pred HHHHhccccCCcEEEEcccccccccccccccCceEEEec
Q 019576 158 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 196 (339)
Q Consensus 158 l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~II 196 (339)
..+.++.....+++||||.+..||.-++ ..|++|++|.
T Consensus 204 ~~~~~~~~~~~~~~~vGD~~~~Di~~a~-~~G~~~i~v~ 241 (242)
T TIGR01459 204 ALKECSNIPKNRMLMVGDSFYTDILGAN-RLGIDTALVL 241 (242)
T ss_pred HHHHcCCCCcccEEEECCCcHHHHHHHH-HCCCeEEEEe
Confidence 3444553123589999999999998777 5699999873
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.85 E-value=0.26 Score=44.89 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=46.4
Q ss_pred HHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 6 RAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 6 r~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+..+.++|.++ ++++.+-..+.+.-.|.+..+|+.|++.|.++.++|||.-.|+..++..+
T Consensus 47 ~~~~~~~~~~~--~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 47 GRMFGLLPSSL--KEEITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred HHHHhhCCCch--HHHHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 34455566554 33454443344666789999999999999999999999999999999876
No 71
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.83 E-value=0.14 Score=46.15 Aligned_cols=29 Identities=34% Similarity=0.687 Sum_probs=24.0
Q ss_pred cCCcEEEEcccccccccccccccCceEEEe
Q 019576 166 SSSQVLYVGDHIYGDILRSKKVLGWRTMLV 195 (339)
Q Consensus 166 ~g~~VLY~GDhI~~Di~~skk~~gWrT~~I 195 (339)
+..++..|||.++.||+-.+. .|-.|++|
T Consensus 135 ~p~eiavIGDrl~TDVl~gN~-~G~~tilv 163 (168)
T PF09419_consen 135 SPSEIAVIGDRLFTDVLMGNR-MGSYTILV 163 (168)
T ss_pred CchhEEEEcchHHHHHHHhhc-cCceEEEE
Confidence 468999999999999999985 47666665
No 72
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=94.56 E-value=0.079 Score=51.84 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=47.6
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCC
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGF 100 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~F 100 (339)
.+||.+..+|+.|+++|.++.|+||+.-+++...|..+ | ...|||+||++.....-
T Consensus 146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-G-------------Ld~YFdvIIs~Gdv~~~ 201 (301)
T TIGR01684 146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-K-------------LDRYFDIIISGGHKAEE 201 (301)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-C-------------CCcccCEEEECCccccC
Confidence 45899999999999999999999999999998887774 3 46799999998865443
No 73
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.52 E-value=0.12 Score=45.94 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=40.7
Q ss_pred cCChhhHHHHhCccccccc------CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 14 RDGTLKQMVAKDPKTYINE------DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi~k------d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
..|.=.+.+.+--+.|..+ .|....+|+.++++|.++.++|||+-.++..++.++
T Consensus 64 ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l 124 (202)
T TIGR01490 64 LAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL 124 (202)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc
Confidence 4555444444433444332 467888999999999999999999999999998865
No 74
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.10 E-value=0.029 Score=48.79 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=31.5
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 93 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv 93 (339)
.-|....+|+ ++.++||++-.+....+..+ | ..+|||.||+
T Consensus 91 ~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~-------------l~~~fd~v~~ 131 (175)
T TIGR01493 91 PWPDSAAALA-------RVAILSNASHWAFDQFAQQA-G-------------LPWYFDRAFS 131 (175)
T ss_pred CCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-C-------------CHHHHhhhcc
Confidence 4577777776 37899999999999888765 2 4778998754
No 75
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=93.99 E-value=0.12 Score=50.56 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=45.9
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 98 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP 98 (339)
.++|.+..+|++|+++|.++.++||.+-+++...+.-+ ....|||+||++....
T Consensus 148 irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l--------------gL~~yFDvII~~g~i~ 201 (303)
T PHA03398 148 IRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET--------------KLEGYFDIIICGGRKA 201 (303)
T ss_pred cCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc--------------CCCccccEEEECCCcc
Confidence 45889999999999999999999999999888877655 2468999999987644
No 76
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=93.91 E-value=0.05 Score=41.58 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=34.5
Q ss_pred HHHHHHhccccCCcEEEEcccccccccccccccCceEEEechhcH
Q 019576 156 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 200 (339)
Q Consensus 156 ~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~ 200 (339)
....+.++. ...++++|||.+..||.-.+ ..||+|++|.--..
T Consensus 11 ~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~-~~G~~~ilV~tG~~ 53 (75)
T PF13242_consen 11 EQALKRLGV-DPSRCVMVGDSLETDIEAAK-AAGIDTILVLTGVY 53 (75)
T ss_dssp HHHHHHHTS-GGGGEEEEESSTTTHHHHHH-HTTSEEEEESSSSS
T ss_pred HHHHHHcCC-CHHHEEEEcCCcHhHHHHHH-HcCCcEEEECCCCC
Confidence 445566666 57899999999999998887 66999999976553
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=93.75 E-value=0.072 Score=47.08 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|....+|+.||++|.++.++|+..-..+..+...+
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l 164 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQL 164 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhhccCcceeeeecccccccccccccc
Confidence 78999999999999999999999999999999864
No 78
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.55 E-value=0.047 Score=48.90 Aligned_cols=58 Identities=16% Similarity=0.046 Sum_probs=42.1
Q ss_pred HHhhcccCChhhHHHHhC-cccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 8 AVDLCHRDGTLKQMVAKD-PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 8 Avd~vH~~G~lk~~v~~n-p~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.||-|+.||++.=.-.-. +.+|=.+|. .-+++|+++|.++.++||.+..+++..+..+
T Consensus 13 d~dGv~tdg~~~~~~~g~~~~~~~~~D~---~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 13 DVDGVMTDGRIVINDEGIESRNFDIKDG---MGVIVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred eCceeeECCeEEEcCCCcEEEEEecchH---HHHHHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 467888888764222222 334444442 4567888999999999999999999999988
No 79
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=93.46 E-value=0.28 Score=42.59 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.0
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 94 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~ 94 (339)
+...|.+..+|+.|++.|.++.++||+.-.++..++..+ .|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI--------------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc--------------CChhheeEEecc
Confidence 445678999999999999999999999999888888654 468899988853
No 80
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=92.80 E-value=0.3 Score=42.20 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=42.8
Q ss_pred ccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 019576 29 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 95 (339)
Q Consensus 29 Yi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A 95 (339)
++..-|.+..+|..|+ .|.++.++||+.-+|+..++..+ | ..+ .+||.|++..
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~-----------~~~-~~f~~i~~~~ 95 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-D-----------PKK-YFGYRRLFRD 95 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-C-----------cCC-CEeeeEEECc
Confidence 4455799999999998 57899999999999999998876 3 223 5679888754
No 81
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=92.58 E-value=0.32 Score=45.88 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=76.6
Q ss_pred CcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCC
Q 019576 25 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHED 104 (339)
Q Consensus 25 np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~ 104 (339)
.|=.+|.+|+.|+.+|..||+.+ ..+.||++=.-+..+.+++-= .|.||.||+--- .
T Consensus 94 LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGi--------------eDcFegii~~e~------~- 150 (244)
T KOG3109|consen 94 LPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGI--------------EDCFEGIICFET------L- 150 (244)
T ss_pred CcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhCh--------------HHhccceeEeec------c-
Confidence 45567999999999999999986 556799999999999999832 689999987421 1
Q ss_pred CCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEccccccccccc
Q 019576 105 NRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRS 184 (339)
Q Consensus 105 ~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~s 184 (339)
.|. ++--. +.|. .+......+..|+.+..++++|-|+ .+.|...
T Consensus 151 --np~-----~~~~v-----------cKP~-----------------~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~a 194 (244)
T KOG3109|consen 151 --NPI-----EKTVV-----------CKPS-----------------EEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTA 194 (244)
T ss_pred --CCC-----CCcee-----------ecCC-----------------HHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHH
Confidence 121 01000 0000 2223445566676434566666555 4677666
Q ss_pred ccccCceEEEechhc
Q 019576 185 KKVLGWRTMLVVPEL 199 (339)
Q Consensus 185 kk~~gWrT~~IIpEL 199 (339)
| ..||+|++|-.|=
T Consensus 195 k-~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 195 K-EVGLKTVLVGREH 208 (244)
T ss_pred H-hccceeEEEEeee
Confidence 6 5699999997664
No 82
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=91.53 E-value=0.32 Score=45.17 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCcc-CccEEEEcc
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLL-YFDVVITGS 95 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~-~FDvVIv~A 95 (339)
-|....+|++|+++|+++.++||+.-.... ....+-. ..... +||.||+.+
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~-~~~~L~~-----------~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFS-LHKTLKS-----------LGINADLPEMIISSG 77 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHH-HHHHHHH-----------CCCCccccceEEccH
Confidence 478899999999999999999999866544 1122211 12344 899999876
No 83
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=91.51 E-value=0.62 Score=44.09 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=45.5
Q ss_pred hhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCC----hhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 019576 18 LKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSL----WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 93 (339)
Q Consensus 18 lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~----~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv 93 (339)
+.+...++...+...-|....+|+.|++.|.++|+|||.. -..++.++. .+|.+ -.++|+++++
T Consensus 101 fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk-~~gip-----------~~~~f~vil~ 168 (237)
T PRK11009 101 FWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLAD-DFHIP-----------ADNMNPVIFA 168 (237)
T ss_pred HHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHH-HcCCC-----------cccceeEEEc
Confidence 4555556556666666678999999999999999999953 345555555 33421 1458988776
Q ss_pred cc
Q 019576 94 GS 95 (339)
Q Consensus 94 ~A 95 (339)
+.
T Consensus 169 gd 170 (237)
T PRK11009 169 GD 170 (237)
T ss_pred CC
Confidence 54
No 84
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=91.17 E-value=0.63 Score=43.99 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=43.4
Q ss_pred hhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCC----ChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 019576 17 TLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNS----LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 92 (339)
Q Consensus 17 ~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS----~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVI 92 (339)
.+.....+.-+....+-+....+|+.++++|.++|++||. .=.+++.++..+ | ..++|++|+
T Consensus 100 ~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-G-------------i~~~f~~i~ 165 (237)
T TIGR01672 100 VFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-H-------------IPAMNPVIF 165 (237)
T ss_pred HHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-C-------------CchheeEEE
Confidence 3444444444444444445889999999999999999998 444666666554 3 246898875
Q ss_pred Ec
Q 019576 93 TG 94 (339)
Q Consensus 93 v~ 94 (339)
.+
T Consensus 166 ~~ 167 (237)
T TIGR01672 166 AG 167 (237)
T ss_pred CC
Confidence 53
No 85
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=91.12 E-value=2.3 Score=40.22 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=59.2
Q ss_pred HHHHhhcccCChhhHHHHhCcccccccCCChHHHHHHH--HHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCC
Q 019576 6 RAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKML--RESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSD 83 (339)
Q Consensus 6 r~Avd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~l--r~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~ 83 (339)
...+...|..|.=.+.|.+-.. =|--+|.++.+|+.+ ...|-.+.+|++|.--|.+.++..- .
T Consensus 47 ~~vl~~L~~~gvt~~~I~~~l~-~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~--------------g 111 (234)
T PF06888_consen 47 DRVLQLLHEQGVTPEDIRDALR-SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH--------------G 111 (234)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH-cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC--------------C
Confidence 3456667777755555555443 355589999999999 4578999999999999999999654 2
Q ss_pred CccCccEEEEccCCCCCCcC
Q 019576 84 WLLYFDVVITGSAKPGFFHE 103 (339)
Q Consensus 84 Wr~~FDvVIv~A~KP~FF~~ 103 (339)
=+++|+=|+++ |..|.+
T Consensus 112 l~~~f~~I~TN---pa~~~~ 128 (234)
T PF06888_consen 112 LRDCFSEIFTN---PACFDA 128 (234)
T ss_pred CccccceEEeC---CceecC
Confidence 37899988886 456654
No 86
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=90.70 E-value=0.19 Score=47.26 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHhccccCCcEEEEcccccccccccccccCceEEEechh
Q 019576 160 KLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 198 (339)
Q Consensus 160 ~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpE 198 (339)
+.++. ...+++||||++..||.-++ ..||+|++|-.-
T Consensus 189 ~~~~~-~~~~~~~VGD~~~~Di~~a~-~~G~~~v~v~~G 225 (249)
T TIGR01457 189 EHLGT-EREETLMVGDNYLTDIRAGI-DAGIDTLLVHTG 225 (249)
T ss_pred HHcCC-CcccEEEECCCchhhHHHHH-HcCCcEEEEcCC
Confidence 34444 45899999999999998777 459999999543
No 87
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=90.51 E-value=0.67 Score=40.90 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=38.3
Q ss_pred CcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 25 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 25 np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+...|+.+-|.+..+|++|++. .++.+.||+.-.|++.++..+
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 3456788889999999999855 899999999999999999988
No 88
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=88.90 E-value=0.37 Score=45.79 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCC
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFF 101 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF 101 (339)
.|....+|+.|++.|.+++++||.+..++..++.++-- ...+||.|+....-+.|.
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~-------------~~~~f~~i~~~~~~~~~~ 244 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ-------------TDIWFDDLIGRPPDMHFQ 244 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH-------------cCCchhhhhCCcchhhhc
Confidence 36778999999999999999999999999999999833 123799887766333333
No 89
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=88.88 E-value=0.23 Score=48.46 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=25.5
Q ss_pred CcEEEEcccccccccccccccCceEEEech
Q 019576 168 SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 168 ~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
.++++|||.+++||+-++ ..||.|++|-.
T Consensus 264 ~~~~mIGD~~~tDI~ga~-~~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQ-NYGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHH-hCCceEEEecc
Confidence 589999999999999777 46999999953
No 90
>PRK11590 hypothetical protein; Provisional
Probab=88.73 E-value=2.3 Score=38.67 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=33.4
Q ss_pred ccCCChHHHH-HHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 31 NEDRSIVPML-KMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 31 ~kd~~l~~~L-~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
..-|.....| +.+++.|.++.++|||+-.|+..++.++
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l 133 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT 133 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc
Confidence 3468899999 5688899999999999999999999886
No 91
>PTZ00445 p36-lilke protein; Provisional
Probab=88.33 E-value=1.2 Score=41.88 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=90.2
Q ss_pred hhcccCChhhHHHHhCccccccc-CCChHHHHHHHHHcCCeEEEeeCCChhh-----------hHHHHHhhccCCCCCCC
Q 019576 10 DLCHRDGTLKQMVAKDPKTYINE-DRSIVPMLKMLRESGRSTFLVTNSLWDY-----------TTIVMNFLCGSHTLDGG 77 (339)
Q Consensus 10 d~vH~~G~lk~~v~~np~kYi~k-d~~l~~~L~~lr~~GKklFLiTNS~~~y-----------t~~~M~yl~g~~~~~~~ 77 (339)
=.+|..|...+. +++..++.. .|++..|+.+|+++|-++.++|=|+=.- -..+.++++-.
T Consensus 55 I~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~------ 126 (219)
T PTZ00445 55 ITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK------ 126 (219)
T ss_pred hhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh------
Confidence 347888876665 677778877 4789999999999999999999886532 11233444431
Q ss_pred CCCCCCCccCccEEEEccCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHH
Q 019576 78 ITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGH 157 (339)
Q Consensus 78 ~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~ 157 (339)
+ .--|++..|.|-=|.|+.++ .-+.++ |..+ |. ...+.|. ...
T Consensus 127 -----s-~~~~~i~~~~~yyp~~w~~p--~~y~~~----gl~K------Pd----------------p~iK~yH---le~ 169 (219)
T PTZ00445 127 -----S-KCDFKIKKVYAYYPKFWQEP--SDYRPL----GLDA------PM----------------PLDKSYH---LKQ 169 (219)
T ss_pred -----c-CccceeeeeeeeCCcccCCh--hhhhhh----cccC------CC----------------ccchHHH---HHH
Confidence 1 45689999999999999983 122222 1111 10 1122240 133
Q ss_pred HHHHhccccCCcEEEEcccccccccccccccCceEEEech
Q 019576 158 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 158 l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
+++-.|. ...++|+|=|.. ..|..+ ...||.|+.+..
T Consensus 170 ll~~~gl-~peE~LFIDD~~-~NVeaA-~~lGi~ai~f~~ 206 (219)
T PTZ00445 170 VCSDFNV-NPDEILFIDDDM-NNCKNA-LKEGYIALHVTG 206 (219)
T ss_pred HHHHcCC-CHHHeEeecCCH-HHHHHH-HHCCCEEEEcCC
Confidence 5555555 568999998773 344444 457999998753
No 92
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=87.82 E-value=1.2 Score=39.25 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=46.0
Q ss_pred CcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 019576 25 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 93 (339)
Q Consensus 25 np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv 93 (339)
+..-|+.+-|.+..+|..|.+. -.+.+.|++.-.|++.++..+ ..++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-------------dp~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-------------DRGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-------------CcCCCEEeEEEE
Confidence 3456888899999999999887 899999999999999999988 234567776664
No 93
>PLN02645 phosphoglycolate phosphatase
Probab=87.82 E-value=0.37 Score=46.83 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=28.7
Q ss_pred HHhccccCCcEEEEcccccccccccccccCceEEEech
Q 019576 160 KLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 160 ~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
+.++. +..+++||||.+..||.-++. .||+|++|..
T Consensus 241 ~~~~~-~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~~ 276 (311)
T PLN02645 241 NKFGI-EKSQICMVGDRLDTDILFGQN-GGCKTLLVLS 276 (311)
T ss_pred HHcCC-CcccEEEEcCCcHHHHHHHHH-cCCCEEEEcC
Confidence 33444 468999999999999988774 5999999953
No 94
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=87.43 E-value=1.8 Score=42.63 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=33.8
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+...|....+|+.|++.|.++.++||+...|++.++..+
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L 218 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL 218 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc
Confidence 445688899999999999999999999999988877753
No 95
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=87.06 E-value=1 Score=36.65 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
-|.-..+|+.||++||+++++||+.-.=....+..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 377889999999999999999999854444444444
No 96
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=86.93 E-value=0.51 Score=42.21 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 38 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 38 ~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.-++.|++.|.++.++||.+...+..++..+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 4677888999999999999999999888775
No 97
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=86.35 E-value=0.51 Score=43.89 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=27.1
Q ss_pred HHHhccccCCcE-EEEcccccccccccccccCceEEEec
Q 019576 159 HKLLSIESSSQV-LYVGDHIYGDILRSKKVLGWRTMLVV 196 (339)
Q Consensus 159 ~~ll~~~~g~~V-LY~GDhI~~Di~~skk~~gWrT~~II 196 (339)
.+.++. ...++ +||||.+..||.-++ ..||+|++|.
T Consensus 198 ~~~~~~-~~~~~~~~IGD~~~~Di~~A~-~~G~~~i~v~ 234 (236)
T TIGR01460 198 LNLLQA-RPERRDVMVGDNLRTDILGAK-NAGFDTLLVL 234 (236)
T ss_pred HHHhCC-CCccceEEECCCcHHHHHHHH-HCCCcEEEEe
Confidence 344444 34555 999999999998777 5699999983
No 98
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=86.05 E-value=1.5 Score=37.71 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHh-CcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 20 QMVAK-DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 20 ~~v~~-np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+++.+ -..+.+...|....+|+.++++|.++.++|+|.-.|+..++..+
T Consensus 61 ~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 61 EEVAKEFLARQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred HHHHHHHHHhcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 44444 33344455689999999999999999999999999999998876
No 99
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=85.95 E-value=1.6 Score=45.92 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=31.1
Q ss_pred HhCcccccccCCChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 23 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 23 ~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
..||+.+....|.++..|++|+++|.+++++||..-
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 356777766779999999999999999999999765
No 100
>PRK10444 UMP phosphatase; Provisional
Probab=84.66 E-value=0.72 Score=43.56 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHhccccCCcEEEEcccccccccccccccCceEEEech
Q 019576 159 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 159 ~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
.+.++. ...+++||||.+..||.-.+ ..|++|++|--
T Consensus 184 ~~~~~~-~~~~~v~IGD~~~tDi~~A~-~~G~~~vlV~~ 220 (248)
T PRK10444 184 LNKMQA-HSEETVIVGDNLRTDILAGF-QAGLETILVLS 220 (248)
T ss_pred HHHcCC-CcccEEEECCCcHHHHHHHH-HcCCCEEEECC
Confidence 344454 56899999999999988777 55999999953
No 101
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=82.84 E-value=2.8 Score=41.05 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=51.5
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcC
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 103 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~ 103 (339)
.++|.+..-|.+||+.|..|.|=+-..-+++...|.-+-= .+|||+||+++++-+-...
T Consensus 142 Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L--------------~~~Fd~ii~~G~~~~~~~~ 200 (297)
T PF05152_consen 142 IRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKL--------------EGYFDIIICGGNKAGEYNS 200 (297)
T ss_pred cCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCC--------------ccccEEEEeCCccCCcCCc
Confidence 5789999999999999999999999999999999988721 3899999999998876654
No 102
>PRK08238 hypothetical protein; Validated
Probab=79.38 E-value=3.6 Score=42.81 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|....+|+++++.|.++.|+|||+-.+++.++.++
T Consensus 75 pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l 109 (479)
T PRK08238 75 EEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL 109 (479)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc
Confidence 67789999999999999999999999999999876
No 103
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=78.83 E-value=5.9 Score=35.10 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=34.0
Q ss_pred ccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 29 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 29 Yi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.+...|.+..+|..|+++ .++.++||+.-.+++.++..+
T Consensus 66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred hCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 445568999999999999 799999999999999988775
No 104
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=78.21 E-value=2 Score=42.09 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHHcC-CeEEEeeCCCh
Q 019576 33 DRSIVPMLKMLRESG-RSTFLVTNSLW 58 (339)
Q Consensus 33 d~~l~~~L~~lr~~G-KklFLiTNS~~ 58 (339)
+|.|..+++.+|+.| +++||||||.-
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgsl 120 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSL 120 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCCh
Confidence 467999999999999 79999999987
No 105
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=77.42 E-value=2.9 Score=38.56 Aligned_cols=100 Identities=23% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcCCCCCcceee
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 112 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~~~~~~~~~~v 112 (339)
-|.+..+|+.|++.|.++-+.|||+-.-+..+++-+-. .+|||.||+.+.=+. .+|
T Consensus 88 ~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl--------------~~~f~~~v~~~dv~~------~KP---- 143 (221)
T COG0637 88 IPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGL--------------LDYFDVIVTADDVAR------GKP---- 143 (221)
T ss_pred CccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccC--------------hhhcchhccHHHHhc------CCC----
Confidence 47889999999999999999999998777777755533 689999988654220 011
Q ss_pred cCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccCCcEEEEcccccccccccccccCceE
Q 019576 113 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 192 (339)
Q Consensus 113 ~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT 192 (339)
.|. +|.. -.+.||. ...+++.|.|...| +.+-+..|-++
T Consensus 144 ----------------------~Pd-----------~yL~-----Aa~~Lgv-~P~~CvviEDs~~G--i~Aa~aAGm~v 182 (221)
T COG0637 144 ----------------------APD-----------IYLL-----AAERLGV-DPEECVVVEDSPAG--IQAAKAAGMRV 182 (221)
T ss_pred ----------------------CCH-----------HHHH-----HHHHcCC-ChHHeEEEecchhH--HHHHHHCCCEE
Confidence 000 2211 2345666 67899999999888 45666779999
Q ss_pred EEech
Q 019576 193 MLVVP 197 (339)
Q Consensus 193 ~~IIp 197 (339)
+.|..
T Consensus 183 v~v~~ 187 (221)
T COG0637 183 VGVPA 187 (221)
T ss_pred EEecC
Confidence 88875
No 106
>PLN02645 phosphoglycolate phosphatase
Probab=76.58 E-value=3.9 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|.....|++||++|++++++||....-...+...+
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 67799999999999999999997755544444443
No 107
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=75.44 E-value=2.8 Score=36.98 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.8
Q ss_pred HhCcccccccCCChHHHHHHHHHcCCeEEEeeCC
Q 019576 23 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNS 56 (339)
Q Consensus 23 ~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS 56 (339)
..+|+.+..-+|.++..|+.|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 4578888888889999999999999999999995
No 108
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=72.39 E-value=2.4 Score=36.79 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=26.5
Q ss_pred HHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 39 MLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 39 ~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.|++|+++|.+++++||.+...+..++..+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~ 65 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL 65 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc
Confidence 699999999999999999998888777555
No 109
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=66.64 E-value=7.8 Score=36.53 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
-|.-...|++||++|++++++||....=...+..++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 467889999999999999999997666433444444
No 110
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=64.48 E-value=40 Score=35.24 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=48.3
Q ss_pred chhcHHHHHHH-HHhHHHHHHHHHHHhhHHHHHHHHHhhhhhhccCCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Q 019576 196 VPELEREVELL-WELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 274 (339)
Q Consensus 196 IpEL~~Ei~~~-~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~ 274 (339)
+.|++.|++.+ .+.+.+.++-.+|+..+..|..+++.- + +.+.++...+.++++.++++++..+.++++.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a---v------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA---V------QSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---H------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777644 344556777777777666666655421 0 1122335567778888888888888888877
Q ss_pred Hhhhcc
Q 019576 275 CHQKFH 280 (339)
Q Consensus 275 ~~~~fn 280 (339)
+....+
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 755443
No 111
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=63.19 E-value=10 Score=33.35 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhc
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 69 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 69 (339)
.|....++++++++|.++|++|.++|.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4778899999999999999999999999887777773
No 112
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=62.93 E-value=12 Score=35.09 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHcCCeEEEeeC
Q 019576 34 RSIVPMLKMLRESGRSTFLVTN 55 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTN 55 (339)
|.-...|++|+++|++++++||
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tn 41 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTN 41 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC
Confidence 5678999999999999999998
No 113
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=62.65 E-value=9.3 Score=33.06 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|+...+|+.++++|.+++++|.|+-.++..++..+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~ 126 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL 126 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 56669999999999999999999999999998733
No 114
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=62.33 E-value=13 Score=34.01 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.3
Q ss_pred ccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 31 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 31 ~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
...|....+|+.+|+.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 44789999999999987 99999999999999998876
No 115
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=59.36 E-value=1.3e+02 Score=28.25 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=50.9
Q ss_pred HhhcccCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhcc
Q 019576 9 VDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 70 (339)
Q Consensus 9 vd~vH~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 70 (339)
.+.+|+ ++ +++.+.+.+=|.-||..+++.+-+++++-.+.+++..-=.|+..+..-++|
T Consensus 54 f~~i~~--s~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 54 FGSIHS--SL-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHhcCC--CH-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 455665 34 888998888888899999999999999988888888888899999999998
No 116
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=59.19 E-value=18 Score=30.88 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.7
Q ss_pred ccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhc
Q 019576 27 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 69 (339)
Q Consensus 27 ~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 69 (339)
..||.+-|.+..+|+.+.+. ..+++.|.+.-.|++.++..+.
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT
T ss_pred ceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh
Confidence 46777889999999999655 7999999999999999999995
No 117
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=58.52 E-value=25 Score=30.16 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=50.9
Q ss_pred cCChhhHHHHhCccccc--ccCCChHHHHHHHHHcCCeEEEeeCCChhhhH------------HHHHhhccCCCCCCCCC
Q 019576 14 RDGTLKQMVAKDPKTYI--NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT------------IVMNFLCGSHTLDGGIT 79 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi--~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~------------~~M~yl~g~~~~~~~~~ 79 (339)
.||+|- ..+.+.|. ...+.....|++|++.|.+++++|.-+..... .+..++
T Consensus 8 iDGTL~---~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL----------- 73 (126)
T TIGR01689 8 LDNTIT---LTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL----------- 73 (126)
T ss_pred CCCCcc---cCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-----------
Confidence 578872 33444564 34466778899999999999999999988876 777777
Q ss_pred CCCCCccCccEEEEccCCC---CCCcC
Q 019576 80 CNSDWLLYFDVVITGSAKP---GFFHE 103 (339)
Q Consensus 80 ~~~~Wr~~FDvVIv~A~KP---~FF~~ 103 (339)
..|.=-||=|+++.--| +||-+
T Consensus 74 --~k~~ipYd~l~~~kp~~~~~~~~~d 98 (126)
T TIGR01689 74 --NQHNVPYDEIYVGKPWCGHDGFYVD 98 (126)
T ss_pred --HHcCCCCceEEeCCCcCCCCCceec
Confidence 33555568887754322 35554
No 118
>PRK10444 UMP phosphatase; Provisional
Probab=57.90 E-value=14 Score=34.89 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
-|....+|++|++.|++++++||....=.......+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578889999999999999999999886555555554
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=56.70 E-value=84 Score=29.24 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=11.0
Q ss_pred EechhcHHHHHHHH
Q 019576 194 LVVPELEREVELLW 207 (339)
Q Consensus 194 ~IIpEL~~Ei~~~~ 207 (339)
..+|+|+.|++.+.
T Consensus 93 ~rlp~le~el~~l~ 106 (206)
T PRK10884 93 TRVPDLENQVKTLT 106 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 46799999998664
No 120
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.58 E-value=1e+02 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHH
Q 019576 252 TRMDDLEYQRDKARLSHQEAQRE 274 (339)
Q Consensus 252 ~~~~~l~~~~~~lr~~~~~~~~~ 274 (339)
..+..+..+...++..+.++.++
T Consensus 81 ~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 81 EKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555444
No 121
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=55.66 E-value=16 Score=34.55 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=30.1
Q ss_pred CCChH---HHHHHHHHcCCeEEEeeCCChhhhHHHHHhhcc
Q 019576 33 DRSIV---PMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 70 (339)
Q Consensus 33 d~~l~---~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 70 (339)
.|.++ .+++.+++.|-++|++||-+-..-+.++..|..
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~ 159 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN 159 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH
Confidence 35555 577788899999999999998887778777753
No 122
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=55.57 E-value=18 Score=33.08 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=32.2
Q ss_pred cCCChHHHHH-HHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 32 EDRSIVPMLK-MLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 32 kd~~l~~~L~-~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.-|.....|+ .+++.|.++.++|||+-.|+..++.+.
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 3588889995 788899999999999999999999775
No 123
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=54.95 E-value=23 Score=32.68 Aligned_cols=50 Identities=6% Similarity=0.167 Sum_probs=39.8
Q ss_pred hHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 19 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 19 k~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.+.+.+--+.|+.--|....++..+|++|-++++||.|.-.|++.++..+
T Consensus 65 ~~~v~~~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 65 VEVLEEVREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred HHHHHHHHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 33333333334555688899999999999999999999999999999887
No 124
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=54.73 E-value=34 Score=32.98 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
-|....+|+.|++.|.++|++||..-...+.++..+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 367889999999999999999999866666555555
No 125
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.77 E-value=74 Score=31.22 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHHHhhhhhhccCCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 019576 224 DLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 275 (339)
Q Consensus 224 ~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~ 275 (339)
+-||+..++.+.+++.+ +...++++|++..+.+|..+.+-++-+
T Consensus 104 DWIEEECHRVEAQLALK--------EARkEIkQLkQvieTmrssL~ekDkGi 147 (305)
T PF15290_consen 104 DWIEEECHRVEAQLALK--------EARKEIKQLKQVIETMRSSLAEKDKGI 147 (305)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhchhhhhH
Confidence 44666666666655432 133455566666666665555444333
No 126
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=49.85 E-value=15 Score=36.17 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=42.6
Q ss_pred CCceecCCCHHHHHHHhccc---cCCcEEEEcccccccccccccccCceEEEechhcHHHHHH
Q 019576 146 TCRIFQGGSVGHLHKLLSIE---SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVEL 205 (339)
Q Consensus 146 ~g~vY~gGn~~~l~~ll~~~---~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~ 205 (339)
+..++.|=-...+.+++... ..++.|.|||-+=+||+-.+ .+|..|.+|.-=...|-.+
T Consensus 217 R~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~ 278 (306)
T KOG2882|consen 217 RQPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDI 278 (306)
T ss_pred CCCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHH
Confidence 33466666666666655532 35899999999999999888 6699999997666554433
No 127
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=48.74 E-value=47 Score=32.29 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=35.3
Q ss_pred cccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 30 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 30 i~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+...|....+|+.|+++|.++.++|++.-+++..++.-+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 455789999999999999999999999999999998874
No 128
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=46.88 E-value=31 Score=34.67 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHcC-CeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 019576 34 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 95 (339)
Q Consensus 34 ~~l~~~L~~lr~~G-KklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A 95 (339)
|.+..|++.|-+.| .-+|-++||+|.+-...-.|+.-....++| --..+|-..||.|++.+
T Consensus 199 pGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GP-l~L~~~g~~~~~i~~sg 260 (373)
T COG4850 199 PGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGP-LLLRRWGGVLDNIIESG 260 (373)
T ss_pred CCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCc-hhHhhcCCcccccccch
Confidence 78889999998888 899999999999999999998865443332 23356666666666554
No 129
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=45.73 E-value=16 Score=33.10 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhcc---ccCCcEEEEcccccccccccccccCceEEEechhc
Q 019576 152 GGSVGHLHKLLSI---ESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 199 (339)
Q Consensus 152 gGn~~~l~~ll~~---~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL 199 (339)
+|....+..+.+- .+.++|+.|||-+|.||+-.... |--++.+-|=.
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~gv 170 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPGV 170 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEecccc
Confidence 5666677777772 25699999999999999998865 54556554443
No 130
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=45.03 E-value=7.2 Score=33.72 Aligned_cols=37 Identities=19% Similarity=0.432 Sum_probs=26.7
Q ss_pred HHhCcccccccC--CChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 22 VAKDPKTYINED--RSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 22 v~~np~kYi~kd--~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
+.+.||-++|+. ..+..+|..+.+.+.++|+.|-|++
T Consensus 262 liDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 262 LIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 467889999885 4555666665555779999999975
No 131
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.84 E-value=2e+02 Score=24.59 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=27.3
Q ss_pred CceEEEechhcHHHHHHHHHh-HHHHHHHHHHHhhHHHHHHHHHhhh
Q 019576 189 GWRTMLVVPELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHLK 234 (339)
Q Consensus 189 gWrT~~IIpEL~~Ei~~~~~~-~~~~~~l~~L~~~~~~le~~~~~l~ 234 (339)
+=-++.+|+-|..+|+-.... ..++.++..|...|+.+.+.+-.+-
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666555443322 2366778888888888777665443
No 132
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=44.61 E-value=26 Score=32.93 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=81.3
Q ss_pred hhHHHHhCcccccccC---CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 019576 18 LKQMVAKDPKTYINED---RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 94 (339)
Q Consensus 18 lk~~v~~np~kYi~kd---~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~ 94 (339)
+-.+..+++.+++... |....+++.|+++|-++=|+|||+......-.++. +++.+.|+.+|.
T Consensus 76 ~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~-------------~~~~~~f~~~v~- 141 (222)
T KOG2914|consen 76 FNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH-------------EDIFKNFSHVVL- 141 (222)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh-------------hHHHHhcCCCee-
Confidence 4455566666776664 67779999999999999999999988888777776 568899999998
Q ss_pred cCCCCCCcCCCCCcceeecCCCCcccccCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhccccC-CcEEEE
Q 019576 95 SAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS-SQVLYV 173 (339)
Q Consensus 95 A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~g~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~g-~~VLY~ 173 (339)
+.-|..=.. .| ..-+|. .-.+.+|. .. .++|.|
T Consensus 142 ~d~~~v~~g---KP-------------------------------------~Pdi~l-----~A~~~l~~-~~~~k~lVf 175 (222)
T KOG2914|consen 142 GDDPEVKNG---KP-------------------------------------DPDIYL-----KAAKRLGV-PPPSKCLVF 175 (222)
T ss_pred cCCccccCC---CC-------------------------------------CchHHH-----HHHHhcCC-CCccceEEE
Confidence 554433221 11 011221 11244554 34 788888
Q ss_pred cccccccccccccccCceEEEech
Q 019576 174 GDHIYGDILRSKKVLGWRTMLVVP 197 (339)
Q Consensus 174 GDhI~~Di~~skk~~gWrT~~IIp 197 (339)
.|.+-| +.+-+..||..++|-.
T Consensus 176 eds~~G--v~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 176 EDSPVG--VQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCHHH--HHHHHhcCCeEEEecC
Confidence 888877 4556677999888754
No 133
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=42.98 E-value=26 Score=36.67 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHcCC-eEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGR-STFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GK-klFLiTNS~~~yt~~~M~yl 68 (339)
|.....|++|++.|. ++.++||.+..++..++..+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 677889999999999 99999999999999999886
No 134
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=42.96 E-value=66 Score=30.60 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=40.9
Q ss_pred HhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhcc
Q 019576 23 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 70 (339)
Q Consensus 23 ~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 70 (339)
.....++..-+++++.+++.|.+.|..++-+|-..-.+.+..+.+|-.
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 334445555678999999999999999999999999999999999964
No 135
>PF15342 FAM212: FAM212 family
Probab=42.85 E-value=10 Score=28.62 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=18.1
Q ss_pred HhccccCCcEEEEcccccccccc
Q 019576 161 LLSIESSSQVLYVGDHIYGDILR 183 (339)
Q Consensus 161 ll~~~~g~~VLY~GDhI~~Di~~ 183 (339)
|+...+..+=|..||++|.|++.
T Consensus 31 LmSr~RnRQPLVLGDN~FADLV~ 53 (62)
T PF15342_consen 31 LMSRGRNRQPLVLGDNVFADLVG 53 (62)
T ss_pred HHhccccCCCeeecccHHHHHHH
Confidence 44444678999999999999864
No 136
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=42.83 E-value=66 Score=31.82 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhhhhhcc
Q 019576 264 ARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACL 306 (339)
Q Consensus 264 lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S~Fa~qv~RyAdL 306 (339)
+++.++.|.+..-..--..||..+.+-......++.+..-+++
T Consensus 246 V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~~~~~ 288 (312)
T COG1907 246 VKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRKLIDI 288 (312)
T ss_pred HHHHHHHHHHhcccccccccCCEEEEeccccccchHHHHHHHH
Confidence 4444444443311223357999999877777777655544443
No 137
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=42.49 E-value=30 Score=36.41 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHcC-CeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~G-KklFLiTNS~~~yt~~~M~yl 68 (339)
|....+|+.|++.| .++.++||.+-.++..++..+
T Consensus 387 ~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred HhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 57788999999999 999999999999999999887
No 138
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=41.78 E-value=28 Score=33.03 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCC
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSL 57 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~ 57 (339)
-|....+|++|+++|+++.++||+.
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3568899999999999999999854
No 139
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=41.45 E-value=2.1e+02 Score=26.24 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhh
Q 019576 241 GIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQ 277 (339)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~~ 277 (339)
+..++++ .+.+.|+..|+.+|..+.++.-.+.+
T Consensus 138 hMSeeER----~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 138 HMSEEER----EEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred cCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445543 56788888899999988887655543
No 140
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=41.34 E-value=75 Score=33.53 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=31.1
Q ss_pred HHHHhccccCCcEEEEcccccccccccccccCceEEEechhcHHHH
Q 019576 158 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREV 203 (339)
Q Consensus 158 l~~ll~~~~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei 203 (339)
+.++=++ ..++.+-+||+..+|++.||+. |--|..-+-||-+=+
T Consensus 166 Vlk~EnV-d~~~w~H~GDN~~aD~l~pk~L-gI~Tlf~~s~l~~~e 209 (635)
T COG5610 166 VLKLENV-DPKKWIHCGDNWVADYLKPKNL-GISTLFYISQLLPYE 209 (635)
T ss_pred HHhhcCC-ChhheEEecCchhhhhcCcccc-chhHHHHHHHhhhHh
Confidence 3444444 5789999999999999999954 666655555554433
No 141
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=40.88 E-value=33 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhc
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 69 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 69 (339)
+.....|+++++.|.+++|+|..++..+..++..+-
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~ 58 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEELG 58 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcC
Confidence 467789999999999999999999999888888773
No 142
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=40.80 E-value=46 Score=31.42 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHhCccccccc---------------CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCcc
Q 019576 22 VAKDPKTYINE---------------DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLL 86 (339)
Q Consensus 22 v~~np~kYi~k---------------d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~ 86 (339)
+.+||++||.. .+.+...|+.+|+.|+|.=++=|-.-.- + ...|+ .+
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~-~-~i~~~----------------l~ 130 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL-E-ALEPV----------------LD 130 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH-H-HHHHH----------------Hh
Confidence 35678877643 4578899999999999999988864332 1 12222 34
Q ss_pred CccEEEEccCCCCCCc
Q 019576 87 YFDVVITGSAKPGFFH 102 (339)
Q Consensus 87 ~FDvVIv~A~KP~FF~ 102 (339)
..|+|.+.+=.|+|=.
T Consensus 131 ~vD~VllMsVnPGfgG 146 (220)
T COG0036 131 DVDLVLLMSVNPGFGG 146 (220)
T ss_pred hCCEEEEEeECCCCcc
Confidence 6799999999999954
No 143
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=40.32 E-value=1.4e+02 Score=27.70 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=26.6
Q ss_pred EEccccccccccccccc-----CceEEEechhcHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Q 019576 172 YVGDHIYGDILRSKKVL-----GWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIH 231 (339)
Q Consensus 172 Y~GDhI~~Di~~skk~~-----gWrT~~IIpEL~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~~ 231 (339)
+||.|.=-||+-+=+.. .|.. --+||=.-=-..+++.-..-..+..|+..+..+..+|+
T Consensus 41 ~F~~~~~rdiY~sL~~~~~~~~~~k~-~k~~e~VLKAALLrRavedIrR~~klre~k~~l~~L~q 104 (190)
T PF09802_consen 41 WFPEHLQRDIYLSLLHMEDPPASEKK-PKVPEKVLKAALLRRAVEDIRRIIKLREDKPALNKLYQ 104 (190)
T ss_pred CCCchhHHHHHHHHHhccCCcccccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 57777777776554432 1111 11233222223344444433444445544445555554
No 144
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.99 E-value=3e+02 Score=26.32 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhhccCCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 019576 212 LRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFH 280 (339)
Q Consensus 212 ~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn 280 (339)
+..+|..|......|+..+..+..... .+.......+..+..++..++..+....++|..+.|
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~~------~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRLD------EEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHHH------HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666655443221 222345567888888888888888777777665544
No 145
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=39.86 E-value=66 Score=26.78 Aligned_cols=44 Identities=7% Similarity=0.153 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcchhhhhhhhhhc
Q 019576 254 MDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFAC 305 (339)
Q Consensus 254 ~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S~Fa~qv~RyAd 305 (339)
+++|....+.+.+-...+..-+ .+|.++||+- |.++..+.+|++
T Consensus 30 le~L~~kl~~m~dg~e~Va~Vl-----~NW~nV~r~I---s~AS~~l~~~~~ 73 (103)
T PF08654_consen 30 LEALSEKLETMADGAEAVASVL-----ANWQNVFRAI---SMASLSLAKYSE 73 (103)
T ss_pred HHHHHHHHHHHHhccHHHHHHH-----HhHHHHHHHH---HHHHhhhhhccc
Confidence 3344444444444443333222 5788888875 355566666665
No 146
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=38.53 E-value=45 Score=31.30 Aligned_cols=48 Identities=29% Similarity=0.279 Sum_probs=36.7
Q ss_pred cCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 14 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
.||+|- |+.+++ .+.....|++|+++|.++++.|.-++..+..++..+
T Consensus 14 lDGTLL-----~~~~~i--~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l 61 (271)
T PRK03669 14 LDGTLL-----DSHTYD--WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL 61 (271)
T ss_pred CccCCc-----CCCCcC--cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh
Confidence 477774 345543 345778899999999999999999998877776655
No 147
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=37.85 E-value=39 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=31.7
Q ss_pred cCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHh
Q 019576 32 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 67 (339)
Q Consensus 32 kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 67 (339)
.+|.+..+|++|++.|.++.++|+..+..+...+..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 356788999999999999999999999988887764
No 148
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.90 E-value=3.3e+02 Score=25.83 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHH
Q 019576 250 MCTRMDDLEYQRDKARLSHQEAQ 272 (339)
Q Consensus 250 ~~~~~~~l~~~~~~lr~~~~~~~ 272 (339)
++..+++.+.++...+..+..+.
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444433
No 149
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=36.80 E-value=49 Score=30.60 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|.-..+|..++++|++++++||+.-.=...+..++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 46779999999999999999988744333333333
No 150
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.30 E-value=38 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
+++..+++..|+.|.++..||+.+-
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5688899999999999999998754
No 151
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=35.07 E-value=1.5e+02 Score=29.06 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=25.5
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 019576 199 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 230 (339)
Q Consensus 199 L~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~ 230 (339)
|++|+.++.++.+.-++|.+|...-....+.+
T Consensus 205 l~qEval~adK~DI~EEl~RL~sHl~~f~~~L 236 (291)
T TIGR00255 205 LEQEAALLAQRIDIAEEIDRLDSHVKEFYNIL 236 (291)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999886544444433
No 152
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=35.06 E-value=57 Score=31.83 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCChH---HHHHHHHHcCCeEEEeeCCChhhhHHHHHhhcc
Q 019576 33 DRSIV---PMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 70 (339)
Q Consensus 33 d~~l~---~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 70 (339)
.|.++ .+++.+++.|-++|+|||-+=..-+..+..|.-
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~k 184 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKK 184 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHH
Confidence 35555 566778899999999999988788888888853
No 153
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.63 E-value=2.3e+02 Score=27.94 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=23.3
Q ss_pred hhcHHHHHHHHHh-HHHHHHHHHHHhhHHHHHHHHHhhhh
Q 019576 197 PELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHLKW 235 (339)
Q Consensus 197 pEL~~Ei~~~~~~-~~~~~~l~~L~~~~~~le~~~~~l~~ 235 (339)
.+++.|++.+... ....++|..|+..++.+++++..+..
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566544332 34666777777777777776665443
No 154
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.36 E-value=1.2e+02 Score=27.83 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCc
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFH 102 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~~Wr~~FDvVIv~A~KP~FF~ 102 (339)
+.+..+|+.+|++|.|.-|.=|-....- ....|.++.|.|.+.+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~------------------~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVE------------------ELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GG------------------GGTTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCch------------------HHHHHhhhcCEEEEEEecCCCCc
Confidence 4566788899999988888877654331 22567789999999999999754
No 155
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.09 E-value=10 Score=32.67 Aligned_cols=11 Identities=45% Similarity=0.634 Sum_probs=8.7
Q ss_pred CCCCCccCccE
Q 019576 80 CNSDWLLYFDV 90 (339)
Q Consensus 80 ~~~~Wr~~FDv 90 (339)
+---||||||+
T Consensus 109 rI~~WRDYFDv 119 (130)
T COG4308 109 RIVLWRDYFDV 119 (130)
T ss_pred EEEeehhhhhH
Confidence 44569999997
No 156
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=34.08 E-value=44 Score=35.35 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|....+|++||+.|.++.++||.+-.+++.++..+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 56778999999999999999999999999999886
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.00 E-value=1.9e+02 Score=31.08 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhccc
Q 019576 254 MDDLEYQRDKARLSHQEAQRECHQKFHK 281 (339)
Q Consensus 254 ~~~l~~~~~~lr~~~~~~~~~~~~~fn~ 281 (339)
.++|+.++..++....+..+++...++.
T Consensus 264 r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 264 REQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555555555554544444444433
No 158
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.83 E-value=2.7e+02 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 019576 250 MCTRMDDLEYQRDKARLSHQEAQRECHQKFH 280 (339)
Q Consensus 250 ~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn 280 (339)
+...++.+.+....++..+.+++..+.++++
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666667777777666665543
No 159
>PRK11820 hypothetical protein; Provisional
Probab=33.64 E-value=1.7e+02 Score=28.69 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=24.7
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 019576 199 LEREVELLWELRDLRKKLHLLRNERDLIEDQI 230 (339)
Q Consensus 199 L~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~ 230 (339)
|++|+.++.++.+.-++|.+|...-....+.+
T Consensus 202 l~qEval~adK~DI~EEi~RL~sHl~~f~~~L 233 (288)
T PRK11820 202 LEQEVALLAQKADIAEELDRLKSHLKEFREIL 233 (288)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999886544444433
No 160
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.84 E-value=2.5e+02 Score=26.86 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhH-HHHHHHHHHHhhHHHHHHHHHhhhhhhcc-CCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHh
Q 019576 199 LEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLKWSLKS-EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 276 (339)
Q Consensus 199 L~~Ei~~~~~~~-~~~~~l~~L~~~~~~le~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~~ 276 (339)
|..|+.++.+.. .+..+|..|+...+.|++....+...+.. +..-.+....+...+..+.+++..+......+-..+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred hhc
Q 019576 277 QKF 279 (339)
Q Consensus 277 ~~f 279 (339)
..+
T Consensus 174 ~el 176 (239)
T COG1579 174 PEL 176 (239)
T ss_pred HHH
No 161
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=32.38 E-value=38 Score=31.61 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhcc
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 70 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 70 (339)
|....+++.+++.|-++|+|||-+=..-+..+.-|.-
T Consensus 118 p~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~ 154 (229)
T PF03767_consen 118 PGALELYNYARSRGVKVFFITGRPESQREATEKNLKK 154 (229)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH
Confidence 5677899999999999999999888888888888864
No 162
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=32.17 E-value=55 Score=29.36 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=30.0
Q ss_pred hHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 36 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 36 l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
...+|++|+++|.++.++||-+...+..+...+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 678999999999999999999999988888665
No 163
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.81 E-value=2.3e+02 Score=28.42 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=45.5
Q ss_pred hhcHHHHHHHHHh-HHHHHHHHHHHhhHHHHHHHHHh-------hhhhhccC--CCChhHHHHhhhHHHHHHHHHHHHHH
Q 019576 197 PELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHH-------LKWSLKSE--GIDVDEQRKMCTRMDDLEYQRDKARL 266 (339)
Q Consensus 197 pEL~~Ei~~~~~~-~~~~~~l~~L~~~~~~le~~~~~-------l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~lr~ 266 (339)
.||++|-+.+.+. +.+.+++..+..+++.....+.+ +..+++.- ..+.+ ..+.+++++.+..+.+.
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e----~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAE----ERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh----HHHHHHHHHHHHHHHHh
Confidence 4566665544433 34666777776666665554433 22222211 11111 23567788888888888
Q ss_pred hHHHHHHHHhhhccccc
Q 019576 267 SHQEAQRECHQKFHKVW 283 (339)
Q Consensus 267 ~~~~~~~~~~~~fn~~w 283 (339)
.+.+|+..+-.. |+.+
T Consensus 83 ~l~DmEa~LPkk-NGly 98 (330)
T PF07851_consen 83 QLFDMEAFLPKK-NGLY 98 (330)
T ss_pred hHHHHHhhCCCC-CCcc
Confidence 888887655444 5544
No 164
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=31.70 E-value=3.6e+02 Score=26.88 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=12.6
Q ss_pred EechhcHHHHHHHHHh
Q 019576 194 LVVPELEREVELLWEL 209 (339)
Q Consensus 194 ~IIpEL~~Ei~~~~~~ 209 (339)
.-|.+|+.||+..+..
T Consensus 48 dFv~~Ld~ELEKv~~F 63 (310)
T KOG1161|consen 48 DFVRLLDAELEKVNGF 63 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999987754
No 165
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.96 E-value=3.6e+02 Score=23.60 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=43.0
Q ss_pred cCCcEEEEcccccccccccccccCceEEEechhcHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhhccCCCChh
Q 019576 166 SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVD 245 (339)
Q Consensus 166 ~g~~VLY~GDhI~~Di~~skk~~gWrT~~IIpEL~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~ 245 (339)
-|++.+|+=..-=-+.... .-+.+|..||. .+..++..|......++..++.|... +..+
T Consensus 53 ~GKqkiY~~~Q~~~~~~s~---------eel~~ld~ei~------~L~~el~~l~~~~k~l~~eL~~L~~~-----~t~~ 112 (169)
T PF07106_consen 53 YGKQKIYFANQDELEVPSP---------EELAELDAEIK------ELREELAELKKEVKSLEAELASLSSE-----PTNE 112 (169)
T ss_pred ecceEEEeeCccccCCCCc---------hhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCHH
Confidence 5899999866432222211 12344555543 34455666655555555555555432 1222
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhHHHH
Q 019576 246 EQRKMCTRMDDLEYQRDKARLSHQEA 271 (339)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~lr~~~~~~ 271 (339)
+ +...++++.++.+.+...+..+
T Consensus 113 e---l~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 113 E---LREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 4556666666666666665543
No 166
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=29.98 E-value=69 Score=29.48 Aligned_cols=47 Identities=26% Similarity=0.235 Sum_probs=34.2
Q ss_pred cCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHh
Q 019576 14 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 67 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 67 (339)
.||+|-. .++. -.+.....|++|+++|.+++++|+.++..+...+.-
T Consensus 6 lDGTLl~-----~~~~--i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~ 52 (256)
T TIGR00099 6 LDGTLLN-----DDHT--ISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKE 52 (256)
T ss_pred CCCCCCC-----CCCc--cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 4677653 2332 235677899999999999999999998776655543
No 167
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.00 E-value=1e+02 Score=32.24 Aligned_cols=40 Identities=5% Similarity=0.020 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCC
Q 019576 252 TRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGY 291 (339)
Q Consensus 252 ~~~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~ 291 (339)
+.+-++..+..+++....-...++++.|+-.---+|+++.
T Consensus 403 ~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sak 442 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAK 442 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 3444555555556666555666777778777778888763
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.63 E-value=3.9e+02 Score=25.08 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhhccCCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 019576 211 DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 275 (339)
Q Consensus 211 ~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~~ 275 (339)
+...+|+.|+..++.|.+.+.+ ..+.++--+++.+|.+++.+.++++..++.+.+..
T Consensus 136 D~~arl~~l~~~~~rl~~ll~k--------a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEK--------AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666555542 11222223355667777777777777776665544
No 169
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=27.49 E-value=1e+02 Score=21.14 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 21 MVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 21 ~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
.++..+--.+..+..+...++.|++.|-..+.++|+.-
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~ 40 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDG 40 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTS
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCC
Confidence 34455666777888899999999999999999998763
No 170
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=27.47 E-value=2.9e+02 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Q 019576 200 EREVELLWELRDLRKKLHLLRNERDLIEDQI 230 (339)
Q Consensus 200 ~~Ei~~~~~~~~~~~~l~~L~~~~~~le~~~ 230 (339)
++|+.++.++.+..+++.+|...-..+.+.+
T Consensus 1 ~qE~a~~a~k~DI~EEl~RL~sH~~~f~~~l 31 (87)
T PF08340_consen 1 AQEVALLADKADISEELVRLKSHLKQFRELL 31 (87)
T ss_pred CcHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999886544444433
No 171
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.88 E-value=57 Score=26.44 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDY 60 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~y 60 (339)
+++...++..|+.|-+++.|||++-.-
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 467788999999999999999986543
No 172
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=26.34 E-value=22 Score=34.72 Aligned_cols=30 Identities=40% Similarity=0.794 Sum_probs=27.9
Q ss_pred ccccccccccccccCceEEEechhcHHHHH
Q 019576 175 DHIYGDILRSKKVLGWRTMLVVPELEREVE 204 (339)
Q Consensus 175 DhI~~Di~~skk~~gWrT~~IIpEL~~Ei~ 204 (339)
|.+-||..++|+..||..-.-+|||.+|+-
T Consensus 334 d~LqGdasKAk~~LgW~pkv~f~eLVkeMv 363 (376)
T KOG1372|consen 334 DTLQGDASKAKKTLGWKPKVTFPELVKEMV 363 (376)
T ss_pred hhhcCChHHHHHhhCCCCccCHHHHHHHHH
Confidence 788999999999999999999999999873
No 173
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.76 E-value=95 Score=26.04 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=27.2
Q ss_pred Cccccccc--CCChHHHHHHHHHcCCeEEEeeCC
Q 019576 25 DPKTYINE--DRSIVPMLKMLRESGRSTFLVTNS 56 (339)
Q Consensus 25 np~kYi~k--d~~l~~~L~~lr~~GKklFLiTNS 56 (339)
+++.+|.- |.++.+.++++|+.|+++.++...
T Consensus 99 ~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 99 RIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CCCEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 56667665 578999999999999999999876
No 174
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=25.52 E-value=83 Score=29.52 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|.....|++|++.|.++.++||-+...+...+..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l 58 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL 58 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 34678999999999999999999998888887665
No 175
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.50 E-value=5e+02 Score=23.37 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.6
Q ss_pred hhhhhhhhhcc
Q 019576 296 FAHQVERFACL 306 (339)
Q Consensus 296 Fa~qv~RyAdL 306 (339)
||++|.+|.-.
T Consensus 89 YA~rISk~t~~ 99 (188)
T PF10018_consen 89 YAHRISKFTSA 99 (188)
T ss_pred HHHHHHHhcCC
Confidence 77777777655
No 176
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=25.22 E-value=96 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=29.0
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
|.....|++++++|.+++++|..++..+...+..+
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l 52 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI 52 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 45678899999999999999999998877665443
No 177
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.89 E-value=5.4e+02 Score=23.59 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 019576 250 MCTRMDDLEYQRDKARLSH 268 (339)
Q Consensus 250 ~~~~~~~l~~~~~~lr~~~ 268 (339)
....+.++++||+++...-
T Consensus 112 L~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666665443
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.89 E-value=3.6e+02 Score=26.22 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccccccCCCcc
Q 019576 250 MCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNS 294 (339)
Q Consensus 250 ~~~~~~~l~~~~~~lr~~~~~~~~~~~~~fn~~wGSlFRtg~~~S 294 (339)
..+.+++++.+++.++..|.+... .|..+--++-.+|...+
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~----~l~~raRAmq~nG~~t~ 118 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQE----LLKKRARAMQVNGTATS 118 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCChhH
Confidence 567788888888888888876554 44556666666776554
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=24.66 E-value=3.1e+02 Score=20.71 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=9.5
Q ss_pred cHHHHHHHHHhHHHHHHHHHHH
Q 019576 199 LEREVELLWELRDLRKKLHLLR 220 (339)
Q Consensus 199 L~~Ei~~~~~~~~~~~~l~~L~ 220 (339)
|+.||.+ +..+.++|....
T Consensus 6 L~~Eira---kQ~~~eEL~kvk 24 (61)
T PF08826_consen 6 LEAEIRA---KQAIQEELTKVK 24 (61)
T ss_dssp HHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHH
Confidence 5566654 234555555443
No 180
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=24.53 E-value=87 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHH
Q 019576 33 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMN 66 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~ 66 (339)
+|+....|++|+++|.++++.|.-++..+..++.
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred CHHHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 4678899999999999999999999998877776
No 181
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=23.16 E-value=73 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=25.3
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhhc
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 69 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 69 (339)
.++...++.+|+.|-++.+||++.-.-.....++.+
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l 102 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLADIVL 102 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEE
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEE
Confidence 356788889999999999999775544443334433
No 182
>PF09983 DUF2220: Uncharacterized protein conserved in bacteria C-term(DUF2220); InterPro: IPR024534 This is a domain of unknown function that is found predominantly in hypothetical bacterial proteins.
Probab=23.00 E-value=57 Score=29.30 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=18.4
Q ss_pred ceecCCCHHHHH-HHhccccCCcEEEEcc
Q 019576 148 RIFQGGSVGHLH-KLLSIESSSQVLYVGD 175 (339)
Q Consensus 148 ~vY~gGn~~~l~-~ll~~~~g~~VLY~GD 175 (339)
-||.+|+...-. +++.+-.+..|.|+||
T Consensus 66 ~Iyg~G~~~~~~~~~~~~~~~~~~~ywGD 94 (181)
T PF09983_consen 66 VIYGGGFAISSSRRFLKWLQPKPVYYWGD 94 (181)
T ss_pred EEECCCcCcHHHHHHHhhcCCCceEEecc
Confidence 488888754432 3344545669999998
No 183
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=22.81 E-value=1.1e+02 Score=27.45 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.1
Q ss_pred cCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHH
Q 019576 14 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVM 65 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M 65 (339)
.||+|-. .++. -.|.....|++|++.|.+++++|+-++..+..+.
T Consensus 8 lDGTLl~-----~~~~--i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 8 IDGTLTE-----PNRM--ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred cCCCcCC-----CCcc--cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 4677653 3332 3456788999999999999999999998776654
No 184
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=22.45 E-value=1.1e+02 Score=27.34 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=35.4
Q ss_pred cCChhhHHHHhCcccccccCCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHh
Q 019576 14 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 67 (339)
Q Consensus 14 ~~G~lk~~v~~np~kYi~kd~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 67 (339)
.||+|- |+++. -.|.....|++|++.|.+++++|.-++..+..+...
T Consensus 10 lDGTLl-----~~~~~--i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~ 56 (230)
T PRK01158 10 IDGTIT-----DKDRR--LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKL 56 (230)
T ss_pred cCCCcC-----CCCCc--cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHH
Confidence 467665 33442 235677899999999999999999999988776644
No 185
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.21 E-value=6.3e+02 Score=24.83 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 019576 253 RMDDLEYQRDKARLSHQEAQ 272 (339)
Q Consensus 253 ~~~~l~~~~~~lr~~~~~~~ 272 (339)
.+.+..++++.+......+.
T Consensus 107 ~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 107 ELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544443
No 186
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.20 E-value=5.3e+02 Score=24.11 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 019576 253 RMDDLEYQRDKARLSHQEAQREC 275 (339)
Q Consensus 253 ~~~~l~~~~~~lr~~~~~~~~~~ 275 (339)
.++++...+.++.-.+.+|...+
T Consensus 92 qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 92 QIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444433344443333
No 187
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=22.12 E-value=71 Score=31.44 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
|.+..+++.+++.|..++|.||...
T Consensus 145 p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 145 PYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCC
Confidence 5788999999999999999999965
No 188
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=21.92 E-value=1.9e+02 Score=25.98 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHcCCeEEEee-CCChhhhHHHHHhh
Q 019576 33 DRSIVPMLKMLRESGRSTFLVT-NSLWDYTTIVMNFL 68 (339)
Q Consensus 33 d~~l~~~L~~lr~~GKklFLiT-NS~~~yt~~~M~yl 68 (339)
-|+.+..|+.|+++|-++-+++ ++.-+.+..+|+-+
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l 83 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL 83 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc
Confidence 5889999999999998888887 45556666666654
No 189
>PLN02678 seryl-tRNA synthetase
Probab=21.66 E-value=4e+02 Score=27.77 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHHhh
Q 019576 203 VELLWELRDLRKKLHLLRNERDLIEDQIHHL 233 (339)
Q Consensus 203 i~~~~~~~~~~~~l~~L~~~~~~le~~~~~l 233 (339)
++...+.+....++..|+..+-.+..++..+
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455677788888888888888887643
No 190
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.37 E-value=8e+02 Score=27.16 Aligned_cols=24 Identities=8% Similarity=0.201 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHH
Q 019576 250 MCTRMDDLEYQRDKARLSHQEAQR 273 (339)
Q Consensus 250 ~~~~~~~l~~~~~~lr~~~~~~~~ 273 (339)
...+|+.+..+.+.++..++++.+
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666555556555555543
No 191
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=21.08 E-value=24 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=6.3
Q ss_pred CCCCCccCccE
Q 019576 80 CNSDWLLYFDV 90 (339)
Q Consensus 80 ~~~~Wr~~FDv 90 (339)
+-.-||||||.
T Consensus 106 kI~~WRDYFD~ 116 (125)
T PF07858_consen 106 KITLWRDYFDL 116 (125)
T ss_dssp EEEEEEEE--H
T ss_pred EEEEEeccCCH
Confidence 33569999995
No 192
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=20.99 E-value=84 Score=30.22 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred hhhHHHHhCcccccccCCCh--------HHHHHHHHHcCCeEEEeeCC
Q 019576 17 TLKQMVAKDPKTYINEDRSI--------VPMLKMLRESGRSTFLVTNS 56 (339)
Q Consensus 17 ~lk~~v~~np~kYi~kd~~l--------~~~L~~lr~~GKklFLiTNS 56 (339)
.|.+.|.+-...+|...+.. -+.|+.|+++||.||++++-
T Consensus 124 ~l~~~l~~~fGd~ly~P~~~~~~~~~~~wpTL~em~~~GkrViv~~~~ 171 (267)
T cd08590 124 ELNALLNDAFGDLLYTPSDCDDLQGLPNWPTKEDMLNSGKQVVLATGG 171 (267)
T ss_pred HHHHHHHHHhCCeEEcCCcccccccCCCCCCHHHHHhCCCEEEEEeCC
Confidence 35555655566666653322 25889999999999999983
No 193
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=5.7e+02 Score=24.31 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhhc
Q 019576 212 LRKKLHLLRNERDLIEDQIHHLKWSLK 238 (339)
Q Consensus 212 ~~~~l~~L~~~~~~le~~~~~l~~~~~ 238 (339)
...+++.|+..|++||.+++.+...+.
T Consensus 19 ~~~~~~eLm~~K~eiE~qin~~~~vL~ 45 (231)
T KOG3129|consen 19 TKSELKELMDKKTEIETQINELVEVLE 45 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556899999999999999987665544
No 194
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.77 E-value=1.6e+02 Score=27.81 Aligned_cols=44 Identities=14% Similarity=0.300 Sum_probs=36.3
Q ss_pred Cccccccc-----CCChHHHHHHHHHcCCeEEEeeCCChhhhHHHHHhh
Q 019576 25 DPKTYINE-----DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 68 (339)
Q Consensus 25 np~kYi~k-----d~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 68 (339)
+.+.||.+ .|.++.+-++|++.|++|+||+.---.++..|.+-|
T Consensus 77 qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L 125 (227)
T KOG1615|consen 77 QVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL 125 (227)
T ss_pred HHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh
Confidence 44456665 467889999999999999999999888888888776
No 195
>PRK11637 AmiB activator; Provisional
Probab=20.65 E-value=6.7e+02 Score=25.36 Aligned_cols=73 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred chhcHHHHHHHHHhH-HHHHHHHHHHhhHHHHHHHHHhhhhhhccCCCChhHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Q 019576 196 VPELEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 274 (339)
Q Consensus 196 IpEL~~Ei~~~~~~~-~~~~~l~~L~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lr~~~~~~~~~ 274 (339)
+.+++.+|+...+.. ....++..+......++..+..+...+.. ....+++++++++.+...+.++...
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~----------~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE----------TQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q 019576 275 CHQK 278 (339)
Q Consensus 275 ~~~~ 278 (339)
+...
T Consensus 119 l~~~ 122 (428)
T PRK11637 119 QAAQ 122 (428)
T ss_pred HHHH
No 196
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.49 E-value=6.6e+02 Score=28.00 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=8.0
Q ss_pred CCccCccEEEEc
Q 019576 83 DWLLYFDVVITG 94 (339)
Q Consensus 83 ~Wr~~FDvVIv~ 94 (339)
..-.+||-|.++
T Consensus 366 ~~i~~~~~i~~~ 377 (782)
T PRK00409 366 SEIPVFKEIFAD 377 (782)
T ss_pred ccccccceEEEe
Confidence 456677777665
No 197
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.05 E-value=95 Score=27.24 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHcCCeEEEeeCCCh
Q 019576 34 RSIVPMLKMLRESGRSTFLVTNSLW 58 (339)
Q Consensus 34 ~~l~~~L~~lr~~GKklFLiTNS~~ 58 (339)
+++...++..|+.|.+++.||+++-
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4567788889999999999998754
Done!