Query 019577
Match_columns 339
No_of_seqs 279 out of 1522
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vi6_A Homeobox protein nanog; 99.7 3.3E-18 1.1E-22 127.2 3.1 61 56-116 2-62 (62)
2 2da3_A Alpha-fetoprotein enhan 99.7 5E-18 1.7E-22 131.7 4.3 62 55-116 15-76 (80)
3 2h1k_A IPF-1, pancreatic and d 99.7 5.5E-18 1.9E-22 126.6 4.2 60 56-115 2-61 (63)
4 2cue_A Paired box protein PAX6 99.7 1.3E-17 4.3E-22 130.2 6.0 64 55-118 5-68 (80)
5 2dmt_A Homeobox protein BARH-l 99.7 1.3E-17 4.3E-22 130.2 5.6 61 56-116 16-76 (80)
6 2dmu_A Homeobox protein goosec 99.7 1.2E-17 3.9E-22 127.1 5.1 62 55-116 5-66 (70)
7 1nk2_P Homeobox protein VND; h 99.7 1.1E-17 3.6E-22 129.8 4.9 63 57-119 9-71 (77)
8 2cra_A Homeobox protein HOX-B1 99.7 8.6E-18 2.9E-22 127.9 4.0 62 55-116 5-66 (70)
9 2dmq_A LIM/homeobox protein LH 99.7 1.4E-17 4.7E-22 129.6 5.1 64 55-118 5-68 (80)
10 2kt0_A Nanog, homeobox protein 99.7 1.3E-17 4.3E-22 130.9 4.9 62 55-116 20-81 (84)
11 1puf_A HOX-1.7, homeobox prote 99.7 2.7E-17 9.2E-22 127.5 6.6 63 55-117 11-73 (77)
12 2e1o_A Homeobox protein PRH; D 99.7 1.5E-17 5.2E-22 126.6 5.1 62 55-116 5-66 (70)
13 2da2_A Alpha-fetoprotein enhan 99.7 9.8E-18 3.4E-22 127.3 3.6 62 55-116 5-66 (70)
14 3a01_A Homeodomain-containing 99.7 1.9E-17 6.6E-22 133.1 5.2 70 56-125 16-85 (93)
15 2dms_A Homeobox protein OTX2; 99.7 1.7E-17 5.8E-22 129.4 4.7 63 55-117 5-67 (80)
16 2ecc_A Homeobox and leucine zi 99.7 1.2E-17 4.1E-22 131.1 3.8 59 59-117 5-63 (76)
17 2da1_A Alpha-fetoprotein enhan 99.7 1.5E-17 5.2E-22 126.2 3.9 62 55-116 5-66 (70)
18 1ig7_A Homeotic protein MSX-1; 99.7 2.1E-17 7.1E-22 121.1 4.3 57 58-114 1-57 (58)
19 2hdd_A Protein (engrailed home 99.7 1.7E-17 5.8E-22 123.0 3.8 57 58-114 4-60 (61)
20 3nar_A ZHX1, zinc fingers and 99.7 2.3E-17 7.8E-22 133.1 4.6 64 56-119 24-87 (96)
21 2djn_A Homeobox protein DLX-5; 99.7 1.6E-17 5.3E-22 126.5 3.4 61 55-115 5-65 (70)
22 1yz8_P Pituitary homeobox 2; D 99.7 1.2E-17 4.2E-22 126.4 2.3 62 56-117 2-63 (68)
23 1wh5_A ZF-HD homeobox family p 99.7 2.2E-17 7.7E-22 129.7 3.9 60 55-114 15-78 (80)
24 1zq3_P PRD-4, homeotic bicoid 99.7 3.6E-17 1.2E-21 124.0 4.7 60 58-117 3-62 (68)
25 2da5_A Zinc fingers and homeob 99.7 3.1E-17 1.1E-21 126.8 4.2 59 58-116 8-66 (75)
26 1b8i_A Ultrabithorax, protein 99.7 3E-17 1E-21 128.7 4.2 62 55-116 18-79 (81)
27 1ahd_P Antennapedia protein mu 99.7 3.2E-17 1.1E-21 124.4 4.0 60 57-116 2-61 (68)
28 1bw5_A ISL-1HD, insulin gene e 99.7 2E-17 7E-22 124.4 2.8 60 57-116 3-62 (66)
29 2l7z_A Homeobox protein HOX-A1 99.7 5.1E-17 1.7E-21 124.9 4.9 61 56-116 6-66 (73)
30 1jgg_A Segmentation protein EV 99.7 3.8E-17 1.3E-21 120.7 4.0 58 58-115 2-59 (60)
31 1fjl_A Paired protein; DNA-bin 99.7 5.4E-17 1.8E-21 126.8 5.1 61 56-116 17-77 (81)
32 1uhs_A HOP, homeodomain only p 99.7 4.7E-17 1.6E-21 124.5 4.7 59 58-116 2-61 (72)
33 2k40_A Homeobox expressed in E 99.7 1.5E-17 5E-22 125.5 1.6 61 58-118 2-62 (67)
34 2m0c_A Homeobox protein arista 99.7 5E-17 1.7E-21 124.4 4.3 62 55-116 7-68 (75)
35 2da4_A Hypothetical protein DK 99.7 2.3E-17 8E-22 128.6 2.5 61 56-116 7-71 (80)
36 3rkq_A Homeobox protein NKX-2. 99.7 4.8E-17 1.6E-21 118.4 4.0 56 58-113 3-58 (58)
37 2hi3_A Homeodomain-only protei 99.7 6.7E-17 2.3E-21 124.1 4.9 59 58-116 3-62 (73)
38 3a02_A Homeobox protein arista 99.7 3.7E-17 1.2E-21 120.8 3.2 57 60-116 2-58 (60)
39 1ftt_A TTF-1 HD, thyroid trans 99.6 5.7E-17 1.9E-21 122.9 4.2 59 58-116 3-61 (68)
40 2r5y_A Homeotic protein sex co 99.6 4.3E-17 1.5E-21 129.3 3.6 61 55-115 26-86 (88)
41 3a03_A T-cell leukemia homeobo 99.6 6.3E-17 2.1E-21 118.3 3.8 54 62-115 2-55 (56)
42 1wh7_A ZF-HD homeobox family p 99.6 5E-17 1.7E-21 128.0 3.2 58 56-114 16-78 (80)
43 1b72_A Protein (homeobox prote 99.6 8E-17 2.7E-21 130.0 3.9 63 55-117 32-94 (97)
44 2dn0_A Zinc fingers and homeob 99.6 7.1E-17 2.4E-21 124.8 3.4 59 58-116 9-67 (76)
45 1akh_A Protein (mating-type pr 99.6 6.7E-17 2.3E-21 119.5 3.0 57 57-113 5-61 (61)
46 2ly9_A Zinc fingers and homeob 99.6 1.3E-16 4.3E-21 122.4 4.0 60 57-116 6-65 (74)
47 1x2n_A Homeobox protein pknox1 99.6 1.8E-16 6.2E-21 121.3 4.8 63 55-117 5-70 (73)
48 2ecb_A Zinc fingers and homeob 99.6 1.3E-16 4.4E-21 128.4 4.0 58 59-116 13-70 (89)
49 1puf_B PRE-B-cell leukemia tra 99.6 1.7E-16 5.9E-21 121.5 3.7 61 58-118 2-65 (73)
50 1k61_A Mating-type protein alp 99.6 2E-16 6.8E-21 116.7 3.9 56 60-115 1-59 (60)
51 2cqx_A LAG1 longevity assuranc 99.6 1.1E-16 3.9E-21 123.4 1.7 58 58-115 9-67 (72)
52 1b72_B Protein (PBX1); homeodo 99.6 4E-16 1.4E-20 123.0 4.7 61 58-118 2-65 (87)
53 2dmp_A Zinc fingers and homeob 99.6 4.9E-16 1.7E-20 124.1 5.2 58 59-116 15-72 (89)
54 1du6_A PBX1, homeobox protein 99.6 1.6E-16 5.4E-21 118.6 2.1 58 57-114 3-63 (64)
55 2cuf_A FLJ21616 protein; homeo 99.6 4.7E-16 1.6E-20 125.1 4.9 63 55-117 5-82 (95)
56 2dmn_A Homeobox protein TGIF2L 99.6 6E-16 2.1E-20 122.0 4.8 64 55-118 5-71 (83)
57 1le8_B Mating-type protein alp 99.6 3.2E-16 1.1E-20 123.3 3.2 61 58-118 3-66 (83)
58 2l9r_A Homeobox protein NKX-3. 99.6 1.3E-16 4.4E-21 122.7 0.1 55 64-118 11-65 (69)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 8.3E-16 2.8E-20 121.7 4.2 58 57-114 27-87 (87)
60 3nau_A Zinc fingers and homeob 99.6 1.5E-15 5.1E-20 116.3 3.6 53 64-116 11-63 (66)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 1.1E-15 3.7E-20 132.2 3.1 60 56-115 86-145 (146)
62 1e3o_C Octamer-binding transcr 99.5 1.2E-15 4.1E-20 133.6 3.4 60 56-115 100-159 (160)
63 2e19_A Transcription factor 8; 99.5 1.4E-15 4.7E-20 114.9 3.2 53 62-114 8-60 (64)
64 3d1n_I POU domain, class 6, tr 99.5 2.9E-15 9.9E-20 129.7 4.5 59 56-114 92-150 (151)
65 1x2m_A LAG1 longevity assuranc 99.5 1.5E-15 5E-20 115.6 2.2 50 66-115 9-59 (64)
66 2xsd_C POU domain, class 3, tr 99.5 1.5E-15 5.3E-20 133.8 2.6 61 56-116 98-158 (164)
67 2da6_A Hepatocyte nuclear fact 99.5 8.8E-15 3E-19 120.6 5.6 63 55-117 4-87 (102)
68 3l1p_A POU domain, class 5, tr 99.5 5.1E-15 1.7E-19 129.1 3.2 61 55-115 94-154 (155)
69 1wi3_A DNA-binding protein SAT 99.5 1.2E-14 4.1E-19 112.1 3.7 58 56-113 6-64 (71)
70 2d5v_A Hepatocyte nuclear fact 99.5 8.4E-15 2.9E-19 128.0 2.9 61 56-116 96-156 (164)
71 3k2a_A Homeobox protein MEIS2; 99.5 9.2E-15 3.1E-19 111.0 2.7 58 63-120 4-64 (67)
72 1lfb_A Liver transcription fac 99.5 7.6E-15 2.6E-19 120.0 1.6 61 57-117 9-90 (99)
73 1ic8_A Hepatocyte nuclear fact 99.3 6.4E-13 2.2E-17 120.5 1.2 58 57-114 115-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.2 3.2E-12 1.1E-16 103.0 3.8 57 63-119 11-70 (89)
75 2da7_A Zinc finger homeobox pr 99.2 3.4E-12 1.1E-16 98.8 2.9 46 66-111 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.2 6E-12 2.1E-16 120.1 1.9 53 61-113 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.1 4.2E-11 1.4E-15 110.6 3.1 55 58-112 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.7 5.9E-10 2E-14 76.3 -1.8 27 99-125 1-27 (37)
79 2ys9_A Homeobox and leucine zi 89.1 0.12 4.1E-06 39.7 1.2 40 68-107 17-56 (70)
80 1hjb_A Ccaat/enhancer binding 73.4 8.5 0.00029 30.4 6.3 46 109-157 29-74 (87)
81 1gu4_A CAAT/enhancer binding p 72.7 7.5 0.00026 30.1 5.7 45 109-156 29-73 (78)
82 2yy0_A C-MYC-binding protein; 71.5 5.4 0.00018 28.7 4.4 32 126-157 19-50 (53)
83 2jn6_A Protein CGL2762, transp 70.7 2.4 8.3E-05 32.4 2.6 42 62-106 4-45 (97)
84 2dgc_A Protein (GCN4); basic d 69.6 7.5 0.00026 28.7 4.9 32 127-158 31-62 (63)
85 1gd2_E Transcription factor PA 68.7 12 0.00041 28.4 6.0 31 127-157 37-67 (70)
86 1ci6_A Transcription factor AT 67.8 16 0.00056 26.8 6.5 36 122-157 26-61 (63)
87 2glo_A Brinker CG9653-PA; prot 65.4 3 0.0001 29.3 2.0 45 61-106 3-47 (59)
88 2wt7_A Proto-oncogene protein 65.1 19 0.00064 26.3 6.3 35 122-156 26-60 (63)
89 1t2k_D Cyclic-AMP-dependent tr 62.1 30 0.001 24.9 6.9 35 122-156 25-59 (61)
90 1hlv_A CENP-B, major centromer 59.2 7.3 0.00025 30.9 3.4 49 60-111 4-52 (131)
91 1jnm_A Proto-oncogene C-JUN; B 57.5 12 0.00042 27.1 4.1 28 127-154 30-57 (62)
92 1gd2_E Transcription factor PA 53.4 20 0.0007 27.1 4.8 39 115-153 32-70 (70)
93 1tc3_C Protein (TC3 transposas 48.1 8.9 0.0003 24.3 1.9 39 63-106 5-43 (51)
94 3vmx_A Voltage-gated hydrogen 47.7 48 0.0016 23.6 5.6 40 119-158 4-43 (48)
95 1jko_C HIN recombinase, DNA-in 46.4 4 0.00014 26.6 -0.1 41 63-108 5-45 (52)
96 2elh_A CG11849-PA, LD40883P; s 46.3 15 0.00051 27.7 3.2 42 60-106 19-60 (87)
97 2wt7_B Transcription factor MA 46.2 31 0.0011 27.4 5.1 37 121-157 50-86 (90)
98 2yy0_A C-MYC-binding protein; 45.0 21 0.00071 25.6 3.5 26 133-158 19-44 (53)
99 2adl_A CCDA; ribbon-helix-heli 44.9 7.6 0.00026 29.4 1.3 14 308-321 59-72 (72)
100 3hug_A RNA polymerase sigma fa 41.9 17 0.00057 27.4 2.8 45 64-113 38-82 (92)
101 1s7o_A Hypothetical UPF0122 pr 41.5 61 0.0021 25.8 6.3 47 63-114 22-68 (113)
102 1dh3_A Transcription factor CR 37.5 1E+02 0.0035 21.9 6.3 31 127-157 23-53 (55)
103 2jee_A YIIU; FTSZ, septum, coi 37.2 1E+02 0.0034 24.1 6.6 25 132-156 47-71 (81)
104 1xsv_A Hypothetical UPF0122 pr 35.0 72 0.0025 25.2 5.7 46 64-114 26-71 (113)
105 2wuj_A Septum site-determining 34.8 25 0.00084 25.3 2.6 30 127-156 28-57 (57)
106 1hjb_A Ccaat/enhancer binding 34.7 75 0.0026 24.9 5.6 33 125-157 35-67 (87)
107 2jee_A YIIU; FTSZ, septum, coi 33.1 1.4E+02 0.0049 23.2 6.9 42 116-157 24-65 (81)
108 2lv7_A Calcium-binding protein 32.5 77 0.0026 24.2 5.4 45 61-105 27-78 (100)
109 3m9b_A Proteasome-associated A 32.5 52 0.0018 30.7 5.0 39 116-154 58-96 (251)
110 1ci6_A Transcription factor AT 32.4 1.1E+02 0.0039 22.1 5.9 31 126-156 23-53 (63)
111 3lph_A Protein REV; helix-loop 31.4 44 0.0015 25.6 3.6 35 69-117 18-52 (72)
112 2o8x_A Probable RNA polymerase 29.3 24 0.00081 24.5 1.7 44 64-112 16-59 (70)
113 2oxj_A Hybrid alpha/beta pepti 29.1 71 0.0024 21.1 3.8 23 135-157 10-32 (34)
114 3i5g_B Myosin regulatory light 29.0 82 0.0028 25.4 5.2 41 59-99 5-50 (153)
115 2x7l_M HIV REV; nuclear export 28.5 39 0.0013 28.0 3.1 34 70-117 16-49 (115)
116 1t2k_D Cyclic-AMP-dependent tr 28.5 1.3E+02 0.0046 21.3 5.7 31 126-156 22-52 (61)
117 1gu4_A CAAT/enhancer binding p 28.3 1.2E+02 0.0039 23.3 5.6 33 125-157 35-67 (78)
118 1go4_E MAD1 (mitotic arrest de 28.1 70 0.0024 25.9 4.4 32 127-158 13-44 (100)
119 3m91_A Proteasome-associated A 28.0 1.5E+02 0.005 21.1 5.7 29 128-156 18-46 (51)
120 3mzy_A RNA polymerase sigma-H 27.4 38 0.0013 26.7 2.8 44 64-113 110-153 (164)
121 3hnw_A Uncharacterized protein 26.8 1.8E+02 0.0061 24.4 7.0 37 119-155 89-125 (138)
122 3hnw_A Uncharacterized protein 26.7 1.7E+02 0.0058 24.5 6.9 44 114-157 77-120 (138)
123 3gp4_A Transcriptional regulat 26.7 2.6E+02 0.009 22.9 8.0 33 61-106 38-70 (142)
124 3a2a_A Voltage-gated hydrogen 25.8 1.3E+02 0.0043 22.1 5.0 42 118-159 10-51 (58)
125 3gpv_A Transcriptional regulat 25.7 90 0.0031 25.9 5.0 34 61-107 52-85 (148)
126 1iuf_A Centromere ABP1 protein 25.6 50 0.0017 27.1 3.3 48 58-108 6-60 (144)
127 3lay_A Zinc resistance-associa 24.0 2.9E+02 0.0098 24.1 8.1 14 64-77 68-81 (175)
128 1p4w_A RCSB; solution structur 23.9 47 0.0016 25.9 2.7 40 62-107 33-72 (99)
129 3m48_A General control protein 23.6 82 0.0028 20.7 3.3 23 135-157 9-31 (33)
130 3c57_A Two component transcrip 23.4 32 0.0011 26.2 1.6 45 63-113 27-71 (95)
131 1wt6_A Myotonin-protein kinase 23.2 2.1E+02 0.0072 22.3 6.2 39 120-158 32-70 (81)
132 2rn7_A IS629 ORFA; helix, all 22.3 46 0.0016 25.4 2.3 46 61-106 4-52 (108)
133 2v66_B Nuclear distribution pr 21.1 2.9E+02 0.01 22.5 7.0 19 138-156 40-58 (111)
134 1fse_A GERE; helix-turn-helix 20.8 41 0.0014 23.5 1.6 43 63-111 11-53 (74)
135 3c3g_A Alpha/beta peptide with 20.2 1.5E+02 0.0051 19.4 4.0 23 136-158 10-32 (33)
No 1
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.70 E-value=3.3e-18 Score=127.22 Aligned_cols=61 Identities=30% Similarity=0.413 Sum_probs=53.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|+.||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 3456677799999999999999999999999999999999999999999999999999863
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=5e-18 Score=131.65 Aligned_cols=62 Identities=26% Similarity=0.439 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
...+++|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34455666799999999999999999999999999999999999999999999999999864
No 3
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=5.5e-18 Score=126.58 Aligned_cols=60 Identities=33% Similarity=0.618 Sum_probs=54.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 345667789999999999999999999999999999999999999999999999999985
No 4
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.3e-17 Score=130.21 Aligned_cols=64 Identities=28% Similarity=0.557 Sum_probs=58.5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 4456667779999999999999999999999999999999999999999999999999997543
No 5
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=130.24 Aligned_cols=61 Identities=34% Similarity=0.600 Sum_probs=55.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3455566699999999999999999999999999999999999999999999999999853
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=127.07 Aligned_cols=62 Identities=27% Similarity=0.538 Sum_probs=57.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 44566677799999999999999999999999999999999999999999999999999853
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.69 E-value=1.1e-17 Score=129.77 Aligned_cols=63 Identities=30% Similarity=0.473 Sum_probs=57.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHHH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ek 119 (339)
.+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+.+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 445566699999999999999999999999999999999999999999999999999876543
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=8.6e-18 Score=127.94 Aligned_cols=62 Identities=26% Similarity=0.502 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566677799999999999999999999999999999999999999999999999999853
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=129.55 Aligned_cols=64 Identities=25% Similarity=0.498 Sum_probs=58.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3456667779999999999999999999999999999999999999999999999999997543
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-17 Score=130.85 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34555666799999999999999999999999999999999999999999999999999854
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.69 E-value=2.7e-17 Score=127.50 Aligned_cols=63 Identities=33% Similarity=0.485 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 345566777999999999999999999999999999999999999999999999999998643
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.5e-17 Score=126.57 Aligned_cols=62 Identities=42% Similarity=0.676 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34556677899999999999999999999999999999999999999999999999999853
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=9.8e-18 Score=127.30 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=57.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34566677799999999999999999999999999999999999999999999999999853
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=1.9e-17 Score=133.13 Aligned_cols=70 Identities=29% Similarity=0.491 Sum_probs=58.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHHHHHHHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLK 125 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ek~~~~lk 125 (339)
..+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+|+...+.....++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~ 85 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHH
Confidence 3455566799999999999999999999999999999999999999999999999999986655444333
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.7e-17 Score=129.35 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=57.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 345566777999999999999999999999999999999999999999999999999998654
No 16
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.2e-17 Score=131.06 Aligned_cols=59 Identities=27% Similarity=0.320 Sum_probs=55.5
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
.++++||.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999998754
No 17
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=126.24 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=57.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34566677799999999999999999999999999999999999999999999999999853
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=2.1e-17 Score=121.05 Aligned_cols=57 Identities=32% Similarity=0.553 Sum_probs=54.1
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
+++|++||..|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356777999999999999999999999999999999999999999999999999986
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.67 E-value=1.7e-17 Score=122.99 Aligned_cols=57 Identities=32% Similarity=0.634 Sum_probs=52.6
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
+++|++||..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 556777999999999999999999999999999999999999999999999999997
No 20
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=133.15 Aligned_cols=64 Identities=28% Similarity=0.441 Sum_probs=57.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ek 119 (339)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.++..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3456677799999999999999999999999999999999999999999999999999976543
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=126.51 Aligned_cols=61 Identities=31% Similarity=0.494 Sum_probs=56.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4456667779999999999999999999999999999999999999999999999999985
No 22
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.67 E-value=1.2e-17 Score=126.43 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=57.4
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45666778999999999999999999999999999999999999999999999999998643
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=2.2e-17 Score=129.71 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=55.0
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEV----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~----~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
+..+++|+.||.+|+..||..|+. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 344555666999999999999999 999999999999999999999999999999999985
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=3.6e-17 Score=123.97 Aligned_cols=60 Identities=30% Similarity=0.499 Sum_probs=56.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 556777999999999999999999999999999999999999999999999999998654
No 25
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-17 Score=126.84 Aligned_cols=59 Identities=24% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
++|+++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677799999999999999999999999999999999999999999999999999864
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.66 E-value=3e-17 Score=128.66 Aligned_cols=62 Identities=32% Similarity=0.569 Sum_probs=53.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34566677799999999999999999999999999999999999999999999999999863
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.66 E-value=3.2e-17 Score=124.41 Aligned_cols=60 Identities=33% Similarity=0.656 Sum_probs=56.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
++++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 356677799999999999999999999999999999999999999999999999999864
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.66 E-value=2e-17 Score=124.37 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=55.9
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
.+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 355667799999999999999999999999999999999999999999999999999864
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.66 E-value=5.1e-17 Score=124.90 Aligned_cols=61 Identities=26% Similarity=0.479 Sum_probs=56.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999853
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=3.8e-17 Score=120.72 Aligned_cols=58 Identities=36% Similarity=0.562 Sum_probs=54.5
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567779999999999999999999999999999999999999999999999999974
No 31
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.66 E-value=5.4e-17 Score=126.77 Aligned_cols=61 Identities=31% Similarity=0.513 Sum_probs=56.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455566799999999999999999999999999999999999999999999999999864
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.7e-17 Score=124.48 Aligned_cols=59 Identities=34% Similarity=0.590 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
.++|++||..|+.+||..|.. ++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 356777999999999999996 99999999999999999999999999999999999864
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-17 Score=125.49 Aligned_cols=61 Identities=31% Similarity=0.495 Sum_probs=56.9
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+++|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567779999999999999999999999999999999999999999999999999987554
No 34
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=5e-17 Score=124.38 Aligned_cols=62 Identities=31% Similarity=0.568 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+..++.|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34555667799999999999999999999999999999999999999999999999999864
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-17 Score=128.55 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=56.0
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVE----NKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~----~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|+.||..|+.+||..|..+ +||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345556669999999999999999 9999999999999999999999999999999999853
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.65 E-value=4.8e-17 Score=118.40 Aligned_cols=56 Identities=36% Similarity=0.514 Sum_probs=53.0
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
+++|++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 45677799999999999999999999999999999999999999999999999986
No 37
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=6.7e-17 Score=124.07 Aligned_cols=59 Identities=31% Similarity=0.541 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+++|++||..|+.+||..|.. ++||+..++..||..+||+++||+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999995 99999999999999999999999999999999999864
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.65 E-value=3.7e-17 Score=120.83 Aligned_cols=57 Identities=32% Similarity=0.602 Sum_probs=50.5
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
.|++||..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 467799999999999999999999999999999999999999999999999999853
No 39
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.65 E-value=5.7e-17 Score=122.88 Aligned_cols=59 Identities=32% Similarity=0.538 Sum_probs=55.6
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
+++|++||..|+.+||..|..++||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45667799999999999999999999999999999999999999999999999999864
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.65 E-value=4.3e-17 Score=129.31 Aligned_cols=61 Identities=34% Similarity=0.696 Sum_probs=54.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4456667779999999999999999999999999999999999999999999999999985
No 41
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.64 E-value=6.3e-17 Score=118.32 Aligned_cols=54 Identities=35% Similarity=0.639 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+.||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 358999999999999999999999999999999999999999999999999985
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=5e-17 Score=128.02 Aligned_cols=58 Identities=12% Similarity=0.289 Sum_probs=53.2
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
..+++|+.||..|+..|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345556669999999999 7999 999999999999999999999999999999999985
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=8e-17 Score=130.05 Aligned_cols=63 Identities=35% Similarity=0.590 Sum_probs=55.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 445666777999999999999999999999999999999999999999999999999998643
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-17 Score=124.81 Aligned_cols=59 Identities=27% Similarity=0.370 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
...|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34567799999999999999999999999999999999999999999999999999864
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.63 E-value=6.7e-17 Score=119.47 Aligned_cols=57 Identities=33% Similarity=0.518 Sum_probs=48.6
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
.+++|++||..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 445566799999999999999999999999999999999999999999999999986
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=122.37 Aligned_cols=60 Identities=13% Similarity=0.271 Sum_probs=56.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
.++.|++||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 345677799999999999999999999999999999999999999999999999999864
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.8e-16 Score=121.34 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+..+++|++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345566677999999999999987 999999999999999999999999999999999998643
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.3e-16 Score=128.45 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=54.2
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
++.+++|..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3455799999999999999999999999999999999999999999999999999854
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.61 E-value=1.7e-16 Score=121.47 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+++|++|+..|+.+|+..| ..++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5667789999999999999 899999999999999999999999999999999999986543
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.61 E-value=2e-16 Score=116.69 Aligned_cols=56 Identities=27% Similarity=0.397 Sum_probs=53.2
Q ss_pred CCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 60 KKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
++++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4667999999999999999 9999999999999999999999999999999999973
No 51
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=1.1e-16 Score=123.36 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=54.2
Q ss_pred CCCCCcCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
.++++|++..|+.+||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 3456679999999999999 999999999999999999999999999999999999975
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.60 E-value=4e-16 Score=123.04 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 58 SEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+++|++|+..|+.+|+..| ..++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 4667789999999999999 899999999999999999999999999999999999986543
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.9e-16 Score=124.12 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=54.0
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
.+++++|..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999999854
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=1.6e-16 Score=118.65 Aligned_cols=58 Identities=28% Similarity=0.425 Sum_probs=54.4
Q ss_pred CCCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 57 VSEKKRRLSVDQVKALEKNF---EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F---~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
.+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35567779999999999999 89999999999999999999999999999999999986
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=4.7e-16 Score=125.07 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=57.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHC---------------CCCceEeeechhhHhHhhHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------LQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------Ls~rQVqVWFQNRRAK~Kkkq~ 117 (339)
...+++|++|+..|+.+||..|..++||+..+|++||..|+ |++.+|++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 34455666799999999999999999999999999999999 9999999999999999998654
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.59 E-value=6e-16 Score=121.99 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
...+++|++|+..|+.+|+.+|.. ++||+..+|..||..+||+++||+|||||||+|+|+..++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 345556667999999999999987 5999999999999999999999999999999999986543
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.59 E-value=3.2e-16 Score=123.27 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 58 SEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
++++++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|+....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 445667999999999999999 9999999999999999999999999999999999986543
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-16 Score=122.65 Aligned_cols=55 Identities=42% Similarity=0.622 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHH
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLE 118 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~e 118 (339)
+|..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+++..
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 7999999999999999999999999999999999999999999999999987643
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.57 E-value=8.3e-16 Score=121.66 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.1
Q ss_pred CCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
.+++|++|+..|+.+|+..|.. ++||+..+|..||..+||+++||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4555677999999999999999 999999999999999999999999999999999983
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.55 E-value=1.5e-15 Score=116.29 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|||+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 57899999999999999999999999999999999999999999999999753
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.55 E-value=1.1e-15 Score=132.25 Aligned_cols=60 Identities=32% Similarity=0.530 Sum_probs=54.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
..+++|++||..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 344556669999999999999999999999999999999999999999999999999985
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=1.2e-15 Score=133.57 Aligned_cols=60 Identities=28% Similarity=0.441 Sum_probs=53.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
..+++|++||..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 445566679999999999999999999999999999999999999999999999999984
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=114.90 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
...+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999999876
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.54 E-value=2.9e-15 Score=129.75 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=54.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
..+++|++|+..|+.+||..|..++||+..+|..||..|||+++||+|||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34555666999999999999999999999999999999999999999999999999986
No 65
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.5e-15 Score=115.56 Aligned_cols=50 Identities=26% Similarity=0.453 Sum_probs=46.8
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 66 VDQVKALEKNF-EVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 66 ~~Ql~~LE~~F-~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+.|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 578999999999999999999999999999999999974
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.53 E-value=1.5e-15 Score=133.80 Aligned_cols=61 Identities=31% Similarity=0.378 Sum_probs=51.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 4455566699999999999999999999999999999999999999999999999999864
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.8e-15 Score=120.64 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=56.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHH---------------------CCCCceEeeechhhHhHhh
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQEL---------------------GLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~L---------------------gLs~rQVqVWFQNRRAK~K 113 (339)
+..+++|++|+..|+.+||..|..++||+..+|++||..| +|++.+|+|||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 3455666679999999999999999999999999999999 7999999999999999999
Q ss_pred HHHH
Q 019577 114 TKQL 117 (339)
Q Consensus 114 kkq~ 117 (339)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8643
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.50 E-value=5.1e-15 Score=129.09 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=55.8
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHH
Q 019577 55 GHVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 55 ~~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkk 115 (339)
+..+++|++|+..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3455667779999999999999999999999999999999999999999999999999973
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1.2e-14 Score=112.14 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=52.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEV-ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~-~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
..+|.|+.|+.+|+.+|+..|+. ++||+...|..||.+|||++++|+|||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 34555666999999999999999 99999999999999999999999999999997654
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.48 E-value=8.4e-15 Score=127.99 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=53.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHH
Q 019577 56 HVSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQ 116 (339)
Q Consensus 56 ~~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq 116 (339)
..+++|++||..|+.+|+..|..++||+..+|..||..|||+++||+|||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4455666799999999999999999999999999999999999999999999999999854
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=9.2e-15 Score=111.00 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHHHH
Q 019577 63 RLSVDQVKALEKNFE---VENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERD 120 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~---~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ek~ 120 (339)
+|+.+|+.+|+..|. .++||+..+|.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 599999999999999 9999999999999999999999999999999999998766543
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.47 E-value=7.6e-15 Score=120.04 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=53.0
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------HC---CCCceEeeechhhHhHhhHH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQE------------------LG---LQPRQVAVWFQNRRARWKTK 115 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~------------------Lg---Ls~rQVqVWFQNRRAK~Kkk 115 (339)
.+++|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 3445556999999999999999999999999999999 88 99999999999999999876
Q ss_pred HH
Q 019577 116 QL 117 (339)
Q Consensus 116 q~ 117 (339)
+.
T Consensus 89 ~~ 90 (99)
T 1lfb_A 89 HK 90 (99)
T ss_dssp C-
T ss_pred ch
Confidence 53
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.27 E-value=6.4e-13 Score=120.45 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=51.8
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHC---------------------CCCceEeeechhhHhHhhH
Q 019577 57 VSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 57 ~krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------Ls~rQVqVWFQNRRAK~Kk 114 (339)
.+++|+.|+..|+.+|++.|..++||+..+|++||..|+ |++.+|++||||||++.|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 344455599999999999999999999999999999999 9999999999999999875
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=102.99 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHHHH
Q 019577 63 RLSVDQVKALEKNFEV---ENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLER 119 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~---~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ek 119 (339)
.|+..++.+|+.+|.. ++||+..+|.+||..+||+++||++||||||.|+|+..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 3899999999999987 99999999999999999999999999999999999865443
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.4e-12 Score=98.81 Aligned_cols=46 Identities=20% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhH
Q 019577 66 VDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 66 ~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK 111 (339)
.+|+.+|+.+|..+++|+.+++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.16 E-value=6e-12 Score=120.14 Aligned_cols=53 Identities=34% Similarity=0.534 Sum_probs=50.5
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
++.++..|+..|++.|+.++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44599999999999999999999999999999999999999999999999986
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.06 E-value=4.2e-11 Score=110.56 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=49.4
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHC---------------------CCCceEeeechhhHhHh
Q 019577 58 SEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELG---------------------LQPRQVAVWFQNRRARW 112 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~Lg---------------------Ls~rQVqVWFQNRRAK~ 112 (339)
++.|..|++.|+.+|+..|..++||+..+|++||..|+ |++.+|++||||||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33344499999999999999999999999999999988 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=5.9e-10 Score=76.27 Aligned_cols=27 Identities=37% Similarity=0.975 Sum_probs=22.3
Q ss_pred ceEeeechhhHhHhhHHHHHHHHHHHH
Q 019577 99 RQVAVWFQNRRARWKTKQLERDYGVLK 125 (339)
Q Consensus 99 rQVqVWFQNRRAK~Kkkq~ek~~~~lk 125 (339)
+||+|||||||||||+++.++.+..++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999998876655443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.10 E-value=0.12 Score=39.73 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechh
Q 019577 68 QVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 68 Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQN 107 (339)
-.+.|+.+|...+.+.......|+.+.+|+..||+-||--
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3478999999999999999999999999999999999953
No 80
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=73.45 E-value=8.5 Score=30.43 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=26.1
Q ss_pred HhHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 109 RAK~Kkkq~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
|.+.|+++.+.+ +......|..++..|+.+.+.|..|+..|+..|.
T Consensus 29 rSR~krk~r~~e---~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555443332 3334455666666666666666667666666554
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=72.65 E-value=7.5 Score=30.12 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred HhHhhHHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 109 RARWKTKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 109 RAK~Kkkq~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
|.+.|+++.+.+ +......|..++..|+.+...|..|+..|+..|
T Consensus 29 rSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444332 233444555555556666666666666665543
No 82
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.55 E-value=5.4 Score=28.72 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=24.0
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 126 ~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
..+++|+.++..++...+.|.+++.+|+++|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777778888888888888775
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=70.69 E-value=2.4 Score=32.39 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=29.0
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeech
Q 019577 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
+++|.++....-..+.... .....++|+.+|++...|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHH
Confidence 4588887765554443220 12366899999999999999974
No 84
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=69.65 E-value=7.5 Score=28.74 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=22.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
....|......|..+|..|..++..|+..+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445556666778899999999999887753
No 85
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.72 E-value=12 Score=28.43 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=18.2
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
....|...+..+..+|..|+.++..|..++.
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566667777777766666553
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.80 E-value=16 Score=26.77 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=24.1
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 122 ~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
..+......|...+..|..+...|+.|+..||.-|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666677777777777777777777776553
No 87
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=65.36 E-value=3 Score=29.33 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=30.9
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeech
Q 019577 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
+++++.+....+...+.. .........++|+++|+++..|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888887666444443 332222367899999999999999964
No 88
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.06 E-value=19 Score=26.30 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 122 ~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
..|....+.|...+..|..+...|..++..|+..|
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666666666666544
No 89
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.09 E-value=30 Score=24.92 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=22.3
Q ss_pred HHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 122 GVLKANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 122 ~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
..|......|...+..|..+...|..|+..|+..|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666667777777777776654
No 90
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=59.17 E-value=7.3 Score=30.95 Aligned_cols=49 Identities=22% Similarity=0.426 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhH
Q 019577 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK 111 (339)
+|+++|.++...+-..+.....+. ..+||+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 566799999887777775554443 3368999999999999998766543
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.51 E-value=12 Score=27.12 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=12.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKS 154 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~ 154 (339)
....|...+..|..+...|..|+..|+.
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 92
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.42 E-value=20 Score=27.11 Aligned_cols=39 Identities=33% Similarity=0.351 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHH
Q 019577 115 KQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELK 153 (339)
Q Consensus 115 kq~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK 153 (339)
+.++.....+......+..++..|+.++..|..|+..||
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666667777777788888888888888888877654
No 93
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.11 E-value=8.9 Score=24.28 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeech
Q 019577 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
.++..+...+...+... . ...+||+.+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 47777775555555432 2 356889999999999988874
No 94
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=47.74 E-value=48 Score=23.58 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 019577 119 RDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 119 k~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
++...+|..++.|......++.....+..|+.+|+.-|.+
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4556788888888888888888889999999999887754
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=46.37 E-value=4 Score=26.58 Aligned_cols=41 Identities=12% Similarity=0.239 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhh
Q 019577 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNR 108 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNR 108 (339)
.++.++...+...+... ....+||..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666666555555432 235688999999999998888643
No 96
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=46.30 E-value=15 Score=27.69 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=29.5
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeech
Q 019577 60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 60 KRrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
++++++.++....-..+.. .. ...+||+.+|++...|..|..
T Consensus 19 ~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 4456899886555555542 22 356889999999999988863
No 97
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=46.16 E-value=31 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 121 YGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 121 ~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
...|......|..+.+.+..++..+..|+..+|.++.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777788888888877777653
No 98
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.03 E-value=21 Score=25.60 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhhh
Q 019577 133 LNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 133 ~~~dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
.+++.|+.+|+.|+.++..|++++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777666544
No 99
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=44.86 E-value=7.6 Score=29.40 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.2
Q ss_pred cccccCCCccccCc
Q 019577 308 MEEHNFFGDETCNF 321 (339)
Q Consensus 308 ~e~~~~~~~e~c~f 321 (339)
+|+||+|+||-+.|
T Consensus 59 ~e~~G~f~de~R~f 72 (72)
T 2adl_A 59 IEMNGSFADENKDW 72 (72)
T ss_dssp CSCSCCCSSSCCCC
T ss_pred HHHhCCChHhccCC
Confidence 48899998887765
No 100
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.86 E-value=17 Score=27.37 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
++..+..+|...|-.. ..-.+||..+|++...|+.+...-|.+.|
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 7888888887755433 24568899999999999877654444443
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.54 E-value=61 Score=25.80 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
.+++.+..++...|.... .-.++|..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888888887655432 35688999999999999988755555443
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=37.50 E-value=1e+02 Score=21.90 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=22.0
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
..+.|......|..+|..|..++..|+..+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555566778888888888888877654
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.24 E-value=1e+02 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=11.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 132 KLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 132 ~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
+...+.+.++|+.|+.|...-+++|
T Consensus 47 ~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 47 QHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555555544444443
No 104
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.97 E-value=72 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhH
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKT 114 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kk 114 (339)
+++.+..+|.-.|-.. -.-.++|..+|++...|+.+...-|.+.|+
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7778888877665433 245688999999999998887655544443
No 105
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.85 E-value=25 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=17.3
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
-.+.+...+..+..+|..|+.++..|+++|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445556666677777777777777777654
No 106
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.67 E-value=75 Score=24.94 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=23.1
Q ss_pred HhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 125 k~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
+.....+......|..+|..|+.++..|+..+.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777788888888777777664
No 107
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.14 E-value=1.4e+02 Score=23.20 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 116 q~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
.++.+...||..+..|......++...+.|..++.+|+....
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344455555555555555555555556668888888887654
No 108
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=32.52 E-value=77 Score=24.17 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHHCCC--CceEeeec
Q 019577 61 KRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQ--PRQVAVWF 105 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLs--~rQVqVWF 105 (339)
...++.+++..|...|.. +.+.+..+...+.+.+|+. ..+|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445999999999999974 4578888888888888854 44444433
No 109
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.48 E-value=52 Score=30.67 Aligned_cols=39 Identities=26% Similarity=0.221 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 019577 116 QLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKS 154 (339)
Q Consensus 116 q~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~ 154 (339)
.++++...|.+.+.+|......++.+...|+.|+.+|++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555666666666666656666666666666665554
No 110
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.36 E-value=1.1e+02 Score=22.14 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=19.8
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 126 ~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
.....|......|..+|..|..++..|+..+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666777776666666544
No 111
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=31.42 E-value=44 Score=25.61 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=22.4
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 69 VKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 69 l~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
+..++-.|+.++||.+.--.. | =.|||-+|+..+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHH
Confidence 345556688999987542111 0 1589999998654
No 112
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.27 E-value=24 Score=24.47 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHh
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARW 112 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~ 112 (339)
+++.+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.
T Consensus 16 L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 7888888888766433 2456899999999999887765433333
No 113
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.13 E-value=71 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Q 019577 135 YDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 135 ~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
...+..+|..|+.|+.+||+-|.
T Consensus 10 VEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 10 VXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh
Confidence 45567789999999999998775
No 114
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.95 E-value=82 Score=25.42 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCCCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHHCCCCc
Q 019577 59 EKKRRLSVDQVKALEKNFEV-----ENKLEPERKVKLAQELGLQPR 99 (339)
Q Consensus 59 rKRrRfT~~Ql~~LE~~F~~-----~~yPs~~~ReeLA~~LgLs~r 99 (339)
.++.++|.+|+..|+..|.. ..+.+..+...+.+.+|+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34556999999999999974 457888888888888887654
No 115
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=28.53 E-value=39 Score=28.02 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=21.8
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhhHHHH
Q 019577 70 KALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQL 117 (339)
Q Consensus 70 ~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~Kkkq~ 117 (339)
.+++-.|+.++||...=- +|- =.|||.+||.++.
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHH
Confidence 445556889999875411 110 1699999998654
No 116
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.45 E-value=1.3e+02 Score=21.33 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=22.3
Q ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 126 ANYDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 126 ~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
.....|......+..+|..|..++..|+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777655
No 117
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.32 E-value=1.2e+02 Score=23.34 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.3
Q ss_pred HhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 125 KANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 125 k~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
+.....+......|..+|..|+.++..|+..+.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777788888888888888877664
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.05 E-value=70 Score=25.87 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=23.5
Q ss_pred hhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 019577 127 NYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 127 ~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
.++.++...++|..++..|+.++..|..+|-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777888888888888877754
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=27.95 E-value=1.5e+02 Score=21.08 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=13.9
Q ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHhh
Q 019577 128 YDALKLNYDSLQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 128 ~d~L~~~~dsl~~ene~L~~E~~~LK~kl 156 (339)
...|...+..|......-+.++..|++.+
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555554
No 120
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.44 E-value=38 Score=26.70 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 64 LSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 64 fT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
+++.+..+|. .|- ..-.-.+||..+|++...|+.+...-|.+.|
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6667777776 332 2225668999999999999876653333333
No 121
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.76 E-value=1.8e+02 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=17.1
Q ss_pred HHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHh
Q 019577 119 RDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSK 155 (339)
Q Consensus 119 k~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~k 155 (339)
++...||...-.++...+.+..+++.|++++..|+.+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 122
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.72 E-value=1.7e+02 Score=24.51 Aligned_cols=44 Identities=32% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhh
Q 019577 114 TKQLERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 114 kkq~ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
...++.+...+......|+++.-..+...+.+.+++..|+.++.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666666666666666666666666666554
No 123
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=26.67 E-value=2.6e+02 Score=22.90 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeech
Q 019577 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
.|.|+..++..|... ...+.+|++-..|+..+.
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp CBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHH
Confidence 455999999998542 223566776666665554
No 124
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=25.84 E-value=1.3e+02 Score=22.08 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhhh
Q 019577 118 ERDYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNEE 159 (339)
Q Consensus 118 ek~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~~~ 159 (339)
+++...||+.+..|.....-|...+.....|+.+|..-|.+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445667777777777777778888888888999988877654
No 125
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.71 E-value=90 Score=25.93 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechh
Q 019577 61 KRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQN 107 (339)
.|.|+..++..|... ...+.+|++-..|+..+..
T Consensus 52 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHh
Confidence 455999999998532 2346667777766666653
No 126
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.58 E-value=50 Score=27.11 Aligned_cols=48 Identities=17% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCCCcCCHHHHHHHHHHh-hhcCCCCHHHHHHHHH----HH--CCCCceEeeechhh
Q 019577 58 SEKKRRLSVDQVKALEKNF-EVENKLEPERKVKLAQ----EL--GLQPRQVAVWFQNR 108 (339)
Q Consensus 58 krKRrRfT~~Ql~~LE~~F-~~~~yPs~~~ReeLA~----~L--gLs~rQVqVWFQNR 108 (339)
+++|+++|.+|...|-..+ ..++..... +||. ++ +++...|.-|..++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5667789999999999888 566655443 4555 77 77888888887553
No 127
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.04 E-value=2.9e+02 Score=24.07 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHhh
Q 019577 64 LSVDQVKALEKNFE 77 (339)
Q Consensus 64 fT~~Ql~~LE~~F~ 77 (339)
+|++|...+.+.++
T Consensus 68 LT~EQq~ql~~I~~ 81 (175)
T 3lay_A 68 LTTEQQATAQKIYD 81 (175)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 78888888777655
No 128
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.88 E-value=47 Score=25.90 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=30.5
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechh
Q 019577 62 RRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQN 107 (339)
Q Consensus 62 rRfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQN 107 (339)
..+|..+..+|.-.+.-- .-.+||..+|+++..|+.+..+
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 349999999997755322 3478999999999999876653
No 129
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.62 E-value=82 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhh
Q 019577 135 YDSLQHDNEALLKEIRELKSKLN 157 (339)
Q Consensus 135 ~dsl~~ene~L~~E~~~LK~kl~ 157 (339)
.+.+..+|..|+.|+.+||+-|.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHhh
Confidence 45567789999999999998764
No 130
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.37 E-value=32 Score=26.23 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhHhh
Q 019577 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK~K 113 (339)
.++..+..+|.-.+.-- ...+||..+|++...|+.+..+-|.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 38999999998753322 3468999999999999876654444443
No 131
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.21 E-value=2.1e+02 Score=22.29 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhhhh
Q 019577 120 DYGVLKANYDALKLNYDSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 120 ~~~~lk~~~d~L~~~~dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
+....+..+-.+...-......|..|..++..|+.++.+
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333344455677788888888877765
No 132
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=22.31 E-value=46 Score=25.45 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCcCCHHHHHHHHHHhhhc--CCCC-HHHHHHHHHHHCCCCceEeeech
Q 019577 61 KRRLSVDQVKALEKNFEVE--NKLE-PERKVKLAQELGLQPRQVAVWFQ 106 (339)
Q Consensus 61 RrRfT~~Ql~~LE~~F~~~--~yPs-~~~ReeLA~~LgLs~rQVqVWFQ 106 (339)
+++||.++....-..+... .+.+ ......+|..+|+++..|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468888776544444222 1222 13567899999999999988853
No 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.13 E-value=2.9e+02 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 019577 138 LQHDNEALLKEIRELKSKL 156 (339)
Q Consensus 138 l~~ene~L~~E~~~LK~kl 156 (339)
|+.+...|+..+..|+.++
T Consensus 40 Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 134
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.76 E-value=41 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHHCCCCceEeeechhhHhH
Q 019577 63 RLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRAR 111 (339)
Q Consensus 63 RfT~~Ql~~LE~~F~~~~yPs~~~ReeLA~~LgLs~rQVqVWFQNRRAK 111 (339)
.++..+..+|...+. .+ ...++|..+|++...|+.+...-+.|
T Consensus 11 ~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 11 LLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 489999999987432 22 45689999999999887766543333
No 135
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=20.19 E-value=1.5e+02 Score=19.45 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh
Q 019577 136 DSLQHDNEALLKEIRELKSKLNE 158 (339)
Q Consensus 136 dsl~~ene~L~~E~~~LK~kl~~ 158 (339)
..+..+|..|+.|+.+||+-|..
T Consensus 10 EeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 10 XEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhHHHHHHHHHHHHHcc
Confidence 45666888999999999987753
Done!