Query 019580
Match_columns 339
No_of_seqs 189 out of 1515
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02798 nitrilase 100.0 1.8E-53 3.9E-58 392.8 31.0 275 60-334 9-283 (286)
2 KOG0807 Carbon-nitrogen hydrol 100.0 5.4E-53 1.2E-57 359.5 18.6 277 60-337 14-292 (295)
3 cd07587 ML_beta-AS mammalian-l 100.0 1.3E-51 2.9E-56 389.9 29.8 269 60-337 62-361 (363)
4 TIGR03381 agmatine_aguB N-carb 100.0 3.9E-51 8.4E-56 376.0 30.2 264 62-336 1-279 (279)
5 cd07572 nit Nit1, Nit 2, and r 100.0 1.2E-50 2.7E-55 369.9 29.2 263 63-329 1-265 (265)
6 cd07568 ML_beta-AS_like mammal 100.0 2.4E-50 5.1E-55 372.3 30.0 270 60-339 2-287 (287)
7 PLN00202 beta-ureidopropionase 100.0 3E-50 6.6E-55 384.4 30.6 268 60-336 85-381 (405)
8 PRK10438 C-N hydrolase family 100.0 3.6E-49 7.9E-54 358.3 30.1 252 60-333 2-255 (256)
9 cd07573 CPA N-carbamoylputresc 100.0 5.7E-49 1.2E-53 362.5 29.9 266 62-337 1-283 (284)
10 PLN02747 N-carbamolyputrescine 100.0 1.3E-48 2.8E-53 362.2 30.5 268 58-336 3-289 (296)
11 cd07564 nitrilases_CHs Nitrila 100.0 9.7E-49 2.1E-53 363.1 29.5 258 62-334 1-292 (297)
12 cd07583 nitrilase_5 Uncharacte 100.0 5.4E-48 1.2E-52 350.2 29.4 252 63-329 1-253 (253)
13 PLN02504 nitrilase 100.0 7.9E-48 1.7E-52 362.5 30.2 259 58-335 21-321 (346)
14 cd07576 R-amidase_like Pseudom 100.0 8.9E-48 1.9E-52 348.9 28.3 252 63-331 1-254 (254)
15 cd07580 nitrilase_2 Uncharacte 100.0 9.6E-48 2.1E-52 351.5 27.4 255 63-333 1-268 (268)
16 cd07579 nitrilase_1_R2 Second 100.0 5.8E-48 1.3E-52 354.4 24.9 246 63-334 1-269 (279)
17 cd07569 DCase N-carbamyl-D-ami 100.0 1.6E-47 3.5E-52 355.7 27.7 272 60-337 2-301 (302)
18 cd07584 nitrilase_6 Uncharacte 100.0 4.9E-47 1.1E-51 344.9 28.9 252 63-329 1-257 (258)
19 cd07585 nitrilase_7 Uncharacte 100.0 5.3E-47 1.1E-51 345.3 28.3 254 63-333 1-261 (261)
20 cd07565 aliphatic_amidase alip 100.0 1.2E-46 2.6E-51 347.5 30.6 247 62-325 1-260 (291)
21 cd07586 nitrilase_8 Uncharacte 100.0 1.4E-46 2.9E-51 344.1 27.5 258 63-334 1-266 (269)
22 cd07581 nitrilase_3 Uncharacte 100.0 4.9E-46 1.1E-50 337.7 29.8 250 64-329 1-255 (255)
23 cd07574 nitrilase_Rim1_like Un 100.0 4.2E-46 9.2E-51 342.7 27.0 258 62-332 1-280 (280)
24 cd07575 Xc-1258_like Xanthomon 100.0 2.4E-45 5.1E-50 332.8 29.8 249 62-330 1-250 (252)
25 cd07578 nitrilase_1_R1 First n 100.0 1.4E-45 3E-50 335.4 27.8 251 62-332 1-258 (258)
26 cd07577 Ph0642_like Pyrococcus 100.0 1.1E-45 2.5E-50 336.2 25.6 248 63-333 1-259 (259)
27 COG0388 Predicted amidohydrola 100.0 6.1E-45 1.3E-49 334.0 29.5 262 61-334 2-268 (274)
28 PRK13286 amiE acylamide amidoh 100.0 9.8E-45 2.1E-49 340.3 28.8 262 58-334 9-285 (345)
29 cd07567 biotinidase_like bioti 100.0 6.8E-45 1.5E-49 335.3 25.0 237 63-316 2-279 (299)
30 PRK13287 amiF formamidase; Pro 100.0 4.6E-44 1E-48 335.2 30.6 251 58-324 10-271 (333)
31 cd07582 nitrilase_4 Uncharacte 100.0 6E-44 1.3E-48 330.6 29.9 260 63-326 2-287 (294)
32 cd07570 GAT_Gln-NAD-synth Glut 100.0 2.6E-44 5.7E-49 327.5 22.2 256 63-333 1-261 (261)
33 cd07197 nitrilase Nitrilase su 100.0 6.8E-43 1.5E-47 316.1 29.2 247 64-327 1-251 (253)
34 cd07571 ALP_N-acyl_transferase 100.0 5.8E-41 1.3E-45 306.9 24.3 230 62-314 1-251 (270)
35 PRK02628 nadE NAD synthetase; 100.0 3.7E-40 8.1E-45 334.7 27.2 258 60-329 11-295 (679)
36 PRK13981 NAD synthetase; Provi 100.0 2.8E-40 6E-45 329.4 25.2 239 62-314 1-243 (540)
37 KOG0806 Carbon-nitrogen hydrol 100.0 3.1E-41 6.7E-46 301.3 16.2 272 60-336 12-294 (298)
38 PLN02339 NAD+ synthase (glutam 100.0 2.5E-38 5.5E-43 320.7 26.1 256 60-328 2-290 (700)
39 cd07566 ScNTA1_like Saccharomy 100.0 1.1E-36 2.4E-41 281.0 22.4 219 63-288 1-265 (295)
40 PRK00302 lnt apolipoprotein N- 100.0 1.6E-36 3.5E-41 300.4 22.1 231 60-313 218-470 (505)
41 TIGR00546 lnt apolipoprotein N 100.0 1.6E-35 3.4E-40 284.7 20.1 213 60-293 158-391 (391)
42 KOG0805 Carbon-nitrogen hydrol 100.0 9.8E-33 2.1E-37 236.4 22.3 255 60-333 16-312 (337)
43 KOG0808 Carbon-nitrogen hydrol 100.0 5.1E-32 1.1E-36 233.6 18.5 269 60-336 72-370 (387)
44 PF00795 CN_hydrolase: Carbon- 100.0 1.3E-31 2.7E-36 231.6 15.9 169 63-240 1-186 (186)
45 COG0815 Lnt Apolipoprotein N-a 100.0 6.2E-31 1.3E-35 257.8 21.3 233 59-314 225-482 (518)
46 PRK12291 apolipoprotein N-acyl 100.0 7.7E-31 1.7E-35 252.5 20.3 198 62-291 195-413 (418)
47 PRK13825 conjugal transfer pro 99.9 4.2E-24 9.2E-29 203.1 18.9 190 62-271 186-388 (388)
48 KOG2303 Predicted NAD synthase 99.8 1.8E-19 3.9E-24 168.4 10.2 253 59-323 2-286 (706)
49 cd07565 aliphatic_amidase alip 87.8 3.8 8.1E-05 37.8 9.1 71 86-170 162-232 (291)
50 PLN02798 nitrilase 85.4 4.6 0.0001 37.0 8.3 72 223-295 35-118 (286)
51 cd07581 nitrilase_3 Uncharacte 83.4 7 0.00015 34.9 8.5 72 221-295 21-105 (255)
52 cd07572 nit Nit1, Nit 2, and r 83.4 4.7 0.0001 36.2 7.4 71 85-168 161-232 (265)
53 KOG0807 Carbon-nitrogen hydrol 82.3 2 4.3E-05 38.2 4.2 71 91-174 184-255 (295)
54 cd07576 R-amidase_like Pseudom 81.2 10 0.00022 33.7 8.8 68 87-169 152-220 (254)
55 cd07584 nitrilase_6 Uncharacte 81.0 10 0.00022 33.9 8.6 70 85-169 154-224 (258)
56 cd07567 biotinidase_like bioti 80.8 7.4 0.00016 36.1 7.7 68 88-171 191-260 (299)
57 PRK13286 amiE acylamide amidoh 80.2 12 0.00025 35.6 9.0 72 85-170 174-245 (345)
58 cd07580 nitrilase_2 Uncharacte 80.1 18 0.00038 32.6 9.9 73 87-168 154-227 (268)
59 cd07586 nitrilase_8 Uncharacte 79.7 11 0.00023 34.0 8.4 74 89-169 155-228 (269)
60 cd07570 GAT_Gln-NAD-synth Glut 78.4 6.9 0.00015 35.1 6.7 69 89-170 158-227 (261)
61 cd07568 ML_beta-AS_like mammal 77.5 10 0.00022 34.5 7.7 71 222-295 35-121 (287)
62 PLN00202 beta-ureidopropionase 77.1 11 0.00024 36.5 8.0 74 221-296 117-206 (405)
63 cd07197 nitrilase Nitrilase su 77.0 11 0.00023 33.4 7.4 68 88-169 154-221 (253)
64 cd07587 ML_beta-AS mammalian-l 76.2 12 0.00026 35.7 7.9 65 90-168 238-319 (363)
65 cd07583 nitrilase_5 Uncharacte 76.0 13 0.00027 33.2 7.7 70 85-169 151-221 (253)
66 cd07585 nitrilase_7 Uncharacte 76.0 21 0.00045 32.0 9.1 74 86-170 149-223 (261)
67 cd07582 nitrilase_4 Uncharacte 75.3 16 0.00035 33.6 8.3 44 252-296 80-124 (294)
68 PLN02747 N-carbamolyputrescine 75.0 14 0.00029 34.0 7.7 71 221-295 29-115 (296)
69 TIGR03381 agmatine_aguB N-carb 74.6 25 0.00054 31.8 9.3 77 87-169 160-239 (279)
70 cd07571 ALP_N-acyl_transferase 73.6 13 0.00028 33.7 7.2 66 229-295 37-104 (270)
71 cd07564 nitrilases_CHs Nitrila 73.1 19 0.00041 33.1 8.2 72 221-296 24-120 (297)
72 cd07566 ScNTA1_like Saccharomy 72.9 20 0.00043 33.2 8.2 65 230-295 35-115 (295)
73 PRK15018 1-acyl-sn-glycerol-3- 72.7 15 0.00032 33.0 7.2 58 73-141 119-176 (245)
74 PRK10438 C-N hydrolase family 70.0 15 0.00032 33.1 6.6 66 92-170 154-219 (256)
75 PLN02504 nitrilase 67.8 31 0.00066 32.7 8.5 41 253-296 109-149 (346)
76 PF01553 Acyltransferase: Acyl 67.7 12 0.00026 29.3 5.0 52 78-140 76-127 (132)
77 COG0388 Predicted amidohydrola 67.7 28 0.00061 31.4 8.0 67 90-169 163-230 (274)
78 cd07573 CPA N-carbamoylputresc 67.4 29 0.00063 31.4 8.1 72 221-295 23-110 (284)
79 TIGR00530 AGP_acyltrn 1-acyl-s 66.9 24 0.00051 27.5 6.6 51 80-141 76-126 (130)
80 PF00795 CN_hydrolase: Carbon- 66.2 21 0.00045 29.9 6.4 67 224-294 28-113 (186)
81 smart00481 POLIIIAc DNA polyme 66.1 12 0.00027 25.8 4.2 45 81-142 16-60 (67)
82 COG1120 FepC ABC-type cobalami 64.9 15 0.00033 33.2 5.5 77 79-168 142-218 (258)
83 smart00563 PlsC Phosphate acyl 64.2 20 0.00044 27.1 5.6 53 77-141 60-112 (118)
84 cd07577 Ph0642_like Pyrococcus 62.3 50 0.0011 29.5 8.5 65 87-169 151-220 (259)
85 COG3128 PiuC Uncharacterized i 61.8 4.3 9.3E-05 34.7 1.3 31 1-31 93-131 (229)
86 cd07569 DCase N-carbamyl-D-ami 61.1 43 0.00094 30.8 8.1 72 222-295 30-122 (302)
87 PRK13981 NAD synthetase; Provi 59.9 34 0.00073 34.6 7.6 73 85-170 153-226 (540)
88 PRK13287 amiF formamidase; Pro 58.8 64 0.0014 30.4 8.8 71 85-170 173-244 (333)
89 cd07579 nitrilase_1_R2 Second 57.5 58 0.0013 29.7 8.2 66 223-292 24-98 (279)
90 TIGR00542 hxl6Piso_put hexulos 56.7 49 0.0011 29.9 7.5 78 60-141 64-151 (279)
91 cd07578 nitrilase_1_R1 First n 56.7 69 0.0015 28.5 8.4 68 86-169 155-222 (258)
92 PRK09856 fructoselysine 3-epim 54.7 51 0.0011 29.7 7.3 63 75-141 85-147 (275)
93 COG1131 CcmA ABC-type multidru 54.5 30 0.00065 31.9 5.7 78 86-176 147-224 (293)
94 PF09587 PGA_cap: Bacterial ca 53.9 1.1E+02 0.0024 27.3 9.2 76 197-272 119-226 (250)
95 cd07990 LPLAT_LCLAT1-like Lyso 52.1 34 0.00073 29.2 5.4 48 78-140 87-136 (193)
96 PF09142 TruB_C: tRNA Pseudour 51.7 18 0.00038 24.5 2.7 36 254-299 9-44 (56)
97 cd07575 Xc-1258_like Xanthomon 48.6 84 0.0018 27.9 7.6 61 231-294 32-102 (252)
98 PF09587 PGA_cap: Bacterial ca 48.4 86 0.0019 28.0 7.6 76 79-166 170-245 (250)
99 PF10087 DUF2325: Uncharacteri 47.7 47 0.001 24.9 5.0 41 229-273 46-86 (97)
100 COG3473 Maleate cis-trans isom 46.7 1.2E+02 0.0026 26.7 7.6 155 76-272 46-214 (238)
101 PRK13210 putative L-xylulose 5 44.8 92 0.002 28.0 7.4 62 76-141 90-151 (284)
102 cd07992 LPLAT_AAK14816-like Ly 44.4 65 0.0014 27.7 6.0 24 80-103 97-120 (203)
103 PLN00143 tyrosine/nicotianamin 44.4 99 0.0021 29.8 7.9 19 123-141 190-208 (409)
104 PF13788 DUF4180: Domain of un 42.7 55 0.0012 25.7 4.6 61 60-129 4-66 (113)
105 TIGR01264 tyr_amTase_E tyrosin 42.7 1E+02 0.0023 29.4 7.7 41 91-141 166-206 (401)
106 cd07986 LPLAT_ACT14924-like Ly 42.5 62 0.0013 28.0 5.6 51 84-141 89-141 (210)
107 cd07993 LPLAT_DHAPAT-like Lyso 42.2 98 0.0021 26.6 6.8 24 80-103 88-111 (205)
108 cd07988 LPLAT_ABO13168-like Ly 42.1 73 0.0016 26.4 5.7 48 78-141 82-129 (163)
109 COG1121 ZnuC ABC-type Mn/Zn tr 42.0 76 0.0016 28.7 6.1 65 85-162 149-213 (254)
110 cd01821 Rhamnogalacturan_acety 39.4 1.3E+02 0.0029 25.2 7.2 75 62-140 66-150 (198)
111 TIGR00546 lnt apolipoprotein N 39.4 89 0.0019 30.0 6.6 65 231-295 197-264 (391)
112 cd00019 AP2Ec AP endonuclease 38.4 88 0.0019 28.2 6.2 62 75-141 80-141 (279)
113 COG4175 ProV ABC-type proline/ 38.3 62 0.0014 30.5 4.9 71 87-170 176-246 (386)
114 cd03293 ABC_NrtD_SsuB_transpor 38.3 1.2E+02 0.0025 26.3 6.7 73 86-170 142-215 (220)
115 PLN02901 1-acyl-sn-glycerol-3- 38.3 1.2E+02 0.0026 26.4 6.7 54 77-142 107-160 (214)
116 cd03297 ABC_ModC_molybdenum_tr 38.1 87 0.0019 27.0 5.8 70 86-168 142-211 (214)
117 PLN00145 tyrosine/nicotianamin 37.1 1.6E+02 0.0035 28.6 8.1 20 123-142 210-229 (430)
118 COG0252 AnsB L-asparaginase/ar 37.0 2.2E+02 0.0049 27.1 8.7 64 207-273 230-294 (351)
119 TIGR01265 tyr_nico_aTase tyros 36.9 1.9E+02 0.0041 27.7 8.5 20 123-142 189-208 (403)
120 PRK13209 L-xylulose 5-phosphat 36.8 1.3E+02 0.0029 27.1 7.1 62 76-141 95-156 (283)
121 COG4586 ABC-type uncharacteriz 36.7 1E+02 0.0022 28.6 5.9 77 81-170 162-238 (325)
122 TIGR01184 ntrCD nitrate transp 36.4 99 0.0021 27.1 6.0 71 86-169 125-195 (230)
123 PF10566 Glyco_hydro_97: Glyco 36.1 1.2E+02 0.0027 27.7 6.5 63 77-141 29-91 (273)
124 cd03256 ABC_PhnC_transporter A 35.8 1E+02 0.0022 27.0 6.0 70 86-168 155-224 (241)
125 PF14488 DUF4434: Domain of un 35.8 1.4E+02 0.003 25.1 6.4 63 81-144 21-86 (166)
126 PLN02656 tyrosine transaminase 35.5 1.3E+02 0.0029 28.8 7.2 20 123-142 189-208 (409)
127 PRK09461 ansA cytoplasmic aspa 35.4 2.9E+02 0.0064 26.0 9.2 65 207-273 210-275 (335)
128 COG1066 Sms Predicted ATP-depe 35.3 2.7E+02 0.0059 27.2 8.9 39 122-162 196-242 (456)
129 cd03265 ABC_DrrA DrrA is the A 35.0 1E+02 0.0022 26.7 5.7 70 86-168 142-211 (220)
130 PTZ00261 acyltransferase; Prov 34.8 1.3E+02 0.0027 28.8 6.5 52 78-140 200-252 (355)
131 cd07574 nitrilase_Rim1_like Un 34.1 1.7E+02 0.0038 26.2 7.4 66 87-164 163-231 (280)
132 PF01784 NIF3: NIF3 (NGG1p int 33.9 1.4E+02 0.0031 26.5 6.6 59 210-270 34-96 (241)
133 PRK12677 xylose isomerase; Pro 33.9 2.2E+02 0.0047 27.5 8.2 80 60-140 79-176 (384)
134 cd01828 sialate_O-acetylestera 33.7 2.5E+02 0.0053 22.8 7.7 72 63-140 50-128 (169)
135 PRK07324 transaminase; Validat 33.6 1E+02 0.0023 29.2 6.0 41 91-141 151-191 (373)
136 PRK13355 bifunctional HTH-doma 33.4 88 0.0019 31.3 5.7 19 123-141 301-319 (517)
137 cd03301 ABC_MalK_N The N-termi 33.4 1.1E+02 0.0024 26.2 5.8 70 86-168 141-210 (213)
138 cd03298 ABC_ThiQ_thiamine_tran 33.3 1.3E+02 0.0028 25.8 6.1 70 86-168 139-208 (211)
139 cd06551 LPLAT Lysophospholipid 33.0 1.1E+02 0.0025 25.3 5.6 48 86-143 93-141 (187)
140 cd03259 ABC_Carb_Solutes_like 32.9 1.3E+02 0.0028 25.8 6.1 70 86-168 141-210 (213)
141 PRK09997 hydroxypyruvate isome 32.6 2.2E+02 0.0047 25.4 7.7 63 75-141 80-142 (258)
142 TIGR02314 ABC_MetN D-methionin 32.3 1E+02 0.0022 29.2 5.6 72 85-169 150-221 (343)
143 TIGR03234 OH-pyruv-isom hydrox 31.8 3.5E+02 0.0075 23.8 8.9 61 76-141 80-141 (254)
144 TIGR03537 DapC succinyldiamino 31.6 1.3E+02 0.0028 28.2 6.2 42 91-142 134-175 (350)
145 TIGR02315 ABC_phnC phosphonate 31.5 1.6E+02 0.0034 25.8 6.5 70 86-168 156-225 (243)
146 COG0047 PurL Phosphoribosylfor 31.3 3.8E+02 0.0082 23.9 12.1 75 61-142 2-86 (231)
147 PLN02187 rooty/superroot1 31.1 1.9E+02 0.0041 28.5 7.5 19 123-141 224-242 (462)
148 KOG0806 Carbon-nitrogen hydrol 31.0 42 0.00091 31.0 2.6 42 133-178 110-151 (298)
149 cd03261 ABC_Org_Solvent_Resist 30.4 1.5E+02 0.0033 25.8 6.2 72 85-169 146-217 (235)
150 COG1941 FrhG Coenzyme F420-red 30.0 3.1E+02 0.0067 24.6 7.7 81 60-146 2-88 (247)
151 COG1126 GlnQ ABC-type polar am 30.0 88 0.0019 27.8 4.3 79 85-177 146-224 (240)
152 PRK14099 glycogen synthase; Pr 29.9 2.8E+02 0.0062 27.5 8.6 54 208-273 351-404 (485)
153 PLN02274 inosine-5'-monophosph 29.8 3.4E+02 0.0073 27.3 9.0 62 207-271 237-298 (505)
154 COG4555 NatA ABC-type Na+ tran 29.8 84 0.0018 27.7 4.1 71 86-170 144-214 (245)
155 PRK11300 livG leucine/isoleuci 29.4 1.4E+02 0.0031 26.4 5.9 72 85-169 163-234 (255)
156 COG4598 HisP ABC-type histidin 29.4 1.2E+02 0.0026 26.3 4.9 47 85-141 162-208 (256)
157 cd03257 ABC_NikE_OppD_transpor 29.2 1.5E+02 0.0033 25.6 6.0 70 86-168 156-225 (228)
158 PRK14862 rimO ribosomal protei 29.1 1.4E+02 0.0029 29.4 6.1 77 58-147 4-86 (440)
159 PRK13634 cbiO cobalt transport 29.1 1.2E+02 0.0026 27.7 5.5 71 86-169 156-226 (290)
160 cd03296 ABC_CysA_sulfate_impor 29.0 1.5E+02 0.0033 25.9 6.0 72 86-170 147-218 (239)
161 smart00870 Asparaginase Aspara 29.0 3.5E+02 0.0076 25.3 8.6 64 207-273 212-275 (323)
162 PF08821 CGGC: CGGC domain; I 28.9 1.8E+02 0.004 22.4 5.6 54 80-143 52-106 (107)
163 cd01822 Lysophospholipase_L1_l 28.4 2E+02 0.0043 23.4 6.3 70 62-140 65-139 (177)
164 cd00950 DHDPS Dihydrodipicolin 27.8 1.2E+02 0.0026 27.5 5.2 51 78-141 80-131 (284)
165 PRK10253 iron-enterobactin tra 27.6 1.4E+02 0.0031 26.7 5.6 72 85-169 153-224 (265)
166 PF10042 DUF2278: Uncharacteri 27.6 67 0.0014 28.1 3.2 31 73-103 115-145 (206)
167 PF01261 AP_endonuc_2: Xylose 27.5 1.3E+02 0.0029 25.1 5.2 77 61-141 40-130 (213)
168 PRK11629 lolD lipoprotein tran 27.4 2.1E+02 0.0046 24.9 6.6 72 86-171 156-227 (233)
169 TIGR00674 dapA dihydrodipicoli 27.4 1.3E+02 0.0028 27.5 5.3 52 77-141 77-129 (285)
170 cd03295 ABC_OpuCA_Osmoprotecti 27.4 1.8E+02 0.0038 25.6 6.1 71 86-169 146-216 (242)
171 CHL00200 trpA tryptophan synth 27.4 1.6E+02 0.0034 26.8 5.7 30 211-241 205-234 (263)
172 cd03258 ABC_MetN_methionine_tr 27.4 1.6E+02 0.0036 25.6 5.9 70 86-168 151-220 (233)
173 cd07381 MPP_CapA CapA and rela 27.3 4.2E+02 0.0092 23.2 9.0 72 198-271 122-216 (239)
174 PF08140 Cuticle_1: Crustacean 27.2 43 0.00094 21.0 1.4 17 282-298 1-17 (40)
175 cd04501 SGNH_hydrolase_like_4 27.1 2E+02 0.0044 23.7 6.1 78 62-140 60-142 (183)
176 TIGR02770 nickel_nikD nickel i 27.0 1.5E+02 0.0032 25.9 5.5 71 86-169 136-206 (230)
177 PF00155 Aminotran_1_2: Aminot 26.9 1.1E+02 0.0023 28.6 4.8 55 77-141 130-186 (363)
178 KOG0256 1-aminocyclopropane-1- 26.9 4.8E+02 0.01 25.5 8.9 69 61-141 192-264 (471)
179 PRK10771 thiQ thiamine transpo 26.6 1.7E+02 0.0036 25.6 5.8 70 86-168 140-209 (232)
180 PRK15112 antimicrobial peptide 26.6 1.5E+02 0.0032 26.7 5.5 70 86-168 160-229 (267)
181 PRK11153 metN DL-methionine tr 26.5 1.5E+02 0.0033 27.9 5.7 71 86-169 151-221 (343)
182 cd03255 ABC_MJ0796_Lo1CDE_FtsE 26.3 2.2E+02 0.0047 24.4 6.4 67 86-166 151-217 (218)
183 PRK13652 cbiO cobalt transport 26.2 1.7E+02 0.0038 26.4 6.0 71 85-168 147-217 (277)
184 TIGR03005 ectoine_ehuA ectoine 26.2 1.7E+02 0.0037 25.9 5.8 71 86-169 157-227 (252)
185 PLN02376 1-aminocyclopropane-1 26.2 3.3E+02 0.0071 27.2 8.3 54 78-141 182-237 (496)
186 COG1135 AbcC ABC-type metal io 26.2 80 0.0017 29.6 3.6 75 85-172 151-225 (339)
187 PRK07475 hypothetical protein; 26.2 57 0.0012 29.2 2.6 77 8-102 11-87 (245)
188 TIGR03864 PQQ_ABC_ATP ABC tran 26.0 2.9E+02 0.0063 24.1 7.2 71 85-169 142-212 (236)
189 smart00642 Aamy Alpha-amylase 25.9 2.7E+02 0.0058 23.2 6.6 67 79-145 18-92 (166)
190 cd01832 SGNH_hydrolase_like_1 25.6 3E+02 0.0064 22.6 6.9 76 62-140 68-149 (185)
191 cd01834 SGNH_hydrolase_like_2 25.5 2.5E+02 0.0055 22.9 6.5 78 62-140 62-151 (191)
192 COG4604 CeuD ABC-type enteroch 25.5 1.8E+02 0.0038 25.7 5.3 100 91-212 151-250 (252)
193 cd03267 ABC_NatA_like Similar 25.4 1.7E+02 0.0038 25.6 5.6 70 86-168 164-233 (236)
194 PF01081 Aldolase: KDPG and KH 25.3 1.3E+02 0.0028 26.1 4.6 38 85-144 72-109 (196)
195 COG1225 Bcp Peroxiredoxin [Pos 25.2 83 0.0018 26.3 3.2 23 154-176 119-141 (157)
196 PRK11701 phnK phosphonate C-P 25.2 1.9E+02 0.0041 25.7 5.9 71 86-169 162-232 (258)
197 cd02646 R3H_G-patch R3H domain 25.1 2.1E+02 0.0045 19.2 4.7 42 80-139 2-43 (58)
198 COG2100 Predicted Fe-S oxidore 25.1 1.5E+02 0.0032 28.1 5.0 47 76-136 238-284 (414)
199 COG1119 ModF ABC-type molybden 25.1 4.3E+02 0.0093 24.0 7.8 76 83-172 179-256 (257)
200 PRK13637 cbiO cobalt transport 25.1 1.7E+02 0.0038 26.6 5.7 71 85-168 154-224 (287)
201 PRK13636 cbiO cobalt transport 25.0 1.8E+02 0.004 26.4 5.9 70 86-168 152-221 (283)
202 PRK10851 sulfate/thiosulfate t 24.8 1.7E+02 0.0036 27.8 5.7 73 85-170 146-218 (353)
203 PRK11831 putative ABC transpor 24.6 2.1E+02 0.0045 25.7 6.1 71 86-169 154-224 (269)
204 cd03216 ABC_Carb_Monos_I This 24.6 2E+02 0.0044 23.6 5.6 70 85-168 92-161 (163)
205 cd00952 CHBPH_aldolase Trans-o 24.3 1.6E+02 0.0035 27.3 5.4 52 77-141 87-140 (309)
206 KOG2733 Uncharacterized membra 24.1 2.4E+02 0.0053 27.0 6.3 59 211-274 66-147 (423)
207 PLN02607 1-aminocyclopropane-1 24.1 3.3E+02 0.0073 26.6 7.8 55 78-142 183-239 (447)
208 PF00701 DHDPS: Dihydrodipicol 23.9 1.8E+02 0.0039 26.5 5.6 51 78-141 81-132 (289)
209 COG3638 ABC-type phosphate/pho 23.8 1E+02 0.0022 27.8 3.6 70 86-168 158-227 (258)
210 KOG2792 Putative cytochrome C 23.7 1.7E+02 0.0036 26.6 5.0 94 77-175 157-262 (280)
211 PRK10619 histidine/lysine/argi 23.7 1.9E+02 0.0041 25.7 5.6 70 86-169 163-232 (257)
212 PRK08633 2-acyl-glycerophospho 23.4 1.9E+02 0.0041 31.8 6.5 49 83-142 501-549 (1146)
213 TIGR03569 NeuB_NnaB N-acetylne 23.2 1.5E+02 0.0032 28.0 4.9 69 73-142 9-95 (329)
214 TIGR00262 trpA tryptophan synt 23.2 2.1E+02 0.0046 25.8 5.8 30 211-241 201-230 (256)
215 PLN02510 probable 1-acyl-sn-gl 23.1 1.4E+02 0.003 28.7 4.7 50 77-142 157-206 (374)
216 cd08357 Glo_EDI_BRP_like_18 Th 23.1 2.4E+02 0.0052 21.1 5.5 45 123-168 76-120 (125)
217 PRK08960 hypothetical protein; 23.0 2.2E+02 0.0047 27.0 6.2 41 91-141 163-203 (387)
218 PF02630 SCO1-SenC: SCO1/SenC; 23.0 1.3E+02 0.0028 25.3 4.1 105 63-172 53-172 (174)
219 PRK13633 cobalt transporter AT 22.9 3E+02 0.0066 24.8 6.9 69 86-168 155-223 (280)
220 TIGR03538 DapC_gpp succinyldia 22.9 2.2E+02 0.0048 27.0 6.3 40 92-141 164-203 (393)
221 TIGR01277 thiQ thiamine ABC tr 22.9 2.8E+02 0.006 23.8 6.4 70 86-168 139-208 (213)
222 TIGR02323 CP_lyasePhnK phospho 22.8 2.2E+02 0.0049 25.1 5.9 72 85-169 158-229 (253)
223 KOG0257 Kynurenine aminotransf 22.8 2E+02 0.0043 28.0 5.6 49 87-145 166-214 (420)
224 TIGR01825 gly_Cac_T_rel pyrido 22.8 1.9E+02 0.0042 27.2 5.8 48 82-142 152-199 (385)
225 PRK09984 phosphonate/organopho 22.8 2.3E+02 0.005 25.2 6.0 70 86-168 163-232 (262)
226 smart00854 PGA_cap Bacterial c 22.7 3.2E+02 0.0069 24.0 6.8 56 79-145 159-214 (239)
227 PRK13536 nodulation factor exp 22.7 1.7E+02 0.0037 27.6 5.3 72 86-171 183-254 (340)
228 PRK13646 cbiO cobalt transport 22.5 2E+02 0.0044 26.1 5.6 72 86-170 156-227 (286)
229 cd03018 PRX_AhpE_like Peroxire 22.5 2.8E+02 0.0061 21.9 6.0 27 74-100 43-69 (149)
230 PF07355 GRDB: Glycine/sarcosi 22.4 2.6E+02 0.0055 26.6 6.2 62 207-269 49-118 (349)
231 PRK10528 multifunctional acyl- 22.4 3E+02 0.0066 23.1 6.4 70 62-140 72-146 (191)
232 TIGR02211 LolD_lipo_ex lipopro 22.3 2.9E+02 0.0062 23.7 6.4 69 86-168 152-220 (221)
233 PRK13647 cbiO cobalt transport 22.2 2E+02 0.0043 26.0 5.5 69 86-168 149-217 (274)
234 PRK09536 btuD corrinoid ABC tr 22.2 1.7E+02 0.0037 28.3 5.3 71 85-169 149-219 (402)
235 COG1137 YhbG ABC-type (unclass 22.2 3.7E+02 0.0081 23.8 6.7 137 13-170 58-220 (243)
236 PRK10418 nikD nickel transport 22.1 2.1E+02 0.0046 25.4 5.6 70 86-168 151-220 (254)
237 PRK05957 aspartate aminotransf 22.1 2.2E+02 0.0048 27.0 6.1 40 92-141 159-198 (389)
238 PRK13537 nodulation ABC transp 22.1 1.8E+02 0.0039 26.8 5.3 71 86-170 149-219 (306)
239 PRK06015 keto-hydroxyglutarate 22.0 1.5E+02 0.0033 25.7 4.4 38 85-144 68-105 (201)
240 PLN02231 alanine transaminase 22.0 2.7E+02 0.0058 28.1 6.8 54 78-141 254-309 (534)
241 PLN00175 aminotransferase fami 22.0 2.4E+02 0.0052 27.2 6.3 41 91-141 185-225 (413)
242 PRK00302 lnt apolipoprotein N- 22.0 3E+02 0.0065 27.4 7.1 66 229-295 255-324 (505)
243 PF14419 SPOUT_MTase_2: AF2226 21.9 1.9E+02 0.0041 24.2 4.6 40 63-103 1-42 (173)
244 cd03017 PRX_BCP Peroxiredoxin 21.9 3.3E+02 0.0071 21.1 6.2 16 156-171 111-126 (140)
245 PRK10575 iron-hydroxamate tran 21.8 2.2E+02 0.0048 25.5 5.7 71 86-169 158-228 (265)
246 PLN02368 alanine transaminase 21.8 3.7E+02 0.008 26.0 7.5 53 79-141 194-248 (407)
247 TIGR01187 potA spermidine/putr 21.8 2E+02 0.0044 26.8 5.6 72 86-170 111-182 (325)
248 TIGR02142 modC_ABC molybdenum 21.7 2.3E+02 0.0049 26.8 6.0 72 86-170 142-213 (354)
249 cd03299 ABC_ModC_like Archeal 21.6 2.4E+02 0.0052 24.7 5.8 72 85-169 139-210 (235)
250 PRK09147 succinyldiaminopimela 21.6 2.6E+02 0.0055 26.6 6.4 40 92-141 165-204 (396)
251 PRK13645 cbiO cobalt transport 21.6 2.3E+02 0.0049 25.8 5.8 70 86-168 161-230 (289)
252 cd06453 SufS_like Cysteine des 21.6 2E+02 0.0044 26.9 5.7 38 92-142 138-175 (373)
253 PRK11144 modC molybdate transp 21.5 2.3E+02 0.005 26.8 5.9 78 86-176 139-216 (352)
254 cd03214 ABC_Iron-Siderophores_ 21.4 2.7E+02 0.0059 23.1 5.9 70 86-168 108-177 (180)
255 PRK15093 antimicrobial peptide 21.4 2E+02 0.0043 26.9 5.4 72 85-169 168-239 (330)
256 cd03300 ABC_PotA_N PotA is an 21.4 2.3E+02 0.005 24.7 5.6 71 85-168 140-210 (232)
257 PRK11247 ssuB aliphatic sulfon 21.3 2.3E+02 0.005 25.4 5.6 71 86-169 144-214 (257)
258 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 21.3 2.3E+02 0.0049 24.7 5.5 69 86-168 153-221 (224)
259 PRK13648 cbiO cobalt transport 21.1 4.1E+02 0.0088 23.8 7.3 69 86-168 153-221 (269)
260 PRK13640 cbiO cobalt transport 21.0 2.7E+02 0.0059 25.2 6.1 70 86-169 154-223 (282)
261 PRK08056 threonine-phosphate d 21.0 2.3E+02 0.005 26.5 5.8 41 92-142 141-181 (356)
262 PHA01633 putative glycosyl tra 20.8 2.8E+02 0.0061 26.2 6.3 44 220-273 215-258 (335)
263 PRK14258 phosphate ABC transpo 20.8 2.7E+02 0.0058 24.8 6.0 71 86-169 161-236 (261)
264 TIGR01188 drrA daunorubicin re 20.7 2.1E+02 0.0045 26.3 5.4 71 85-169 134-204 (302)
265 PRK10419 nikE nickel transport 20.6 2.1E+02 0.0045 25.7 5.3 70 86-168 162-231 (268)
266 PRK12414 putative aminotransfe 20.6 2.5E+02 0.0054 26.6 6.1 41 91-141 160-200 (384)
267 TIGR01182 eda Entner-Doudoroff 20.5 1.8E+02 0.0039 25.3 4.6 38 85-144 72-109 (204)
268 PRK06348 aspartate aminotransf 20.5 2.6E+02 0.0056 26.5 6.1 41 91-141 160-200 (384)
269 cd03294 ABC_Pro_Gly_Bertaine T 20.4 2.8E+02 0.006 24.9 6.1 70 86-168 171-240 (269)
270 PRK11614 livF leucine/isoleuci 20.4 2.6E+02 0.0057 24.4 5.8 68 87-168 149-216 (237)
271 TIGR02769 nickel_nikE nickel i 20.4 2.8E+02 0.006 24.8 6.0 72 86-170 161-232 (265)
272 cd08362 BphC5-RrK37_N_like N-t 20.4 2.7E+02 0.0059 20.7 5.3 45 123-170 70-114 (120)
273 PRK10584 putative ABC transpor 20.3 2.9E+02 0.0063 23.9 6.0 69 86-168 157-225 (228)
274 cd03226 ABC_cobalt_CbiO_domain 20.2 2.1E+02 0.0045 24.3 5.0 68 86-167 137-204 (205)
275 COG1127 Ttg2A ABC-type transpo 20.2 5.4E+02 0.012 23.4 7.4 75 85-172 155-229 (263)
276 PRK13635 cbiO cobalt transport 20.1 3E+02 0.0064 24.9 6.2 69 86-168 151-219 (279)
No 1
>PLN02798 nitrilase
Probab=100.00 E-value=1.8e-53 Score=392.80 Aligned_cols=275 Identities=82% Similarity=1.272 Sum_probs=247.6
Q ss_pred cccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEE
Q 019580 60 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWL 139 (339)
Q Consensus 60 ~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~i 139 (339)
++||||++|+++.+|.+.|++++++++++|.++|+|||||||++.++|+...+....++...++.++.++++|++++++|
T Consensus 9 ~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~i 88 (286)
T PLN02798 9 SSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWL 88 (286)
T ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEE
Confidence 57999999999889999999999999999999999999999986567877666556666777889999999999999999
Q ss_pred EEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcc
Q 019580 140 SLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRF 219 (339)
Q Consensus 140 v~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~ 219 (339)
++|++.++..+++++||++++|+|+|++++.|+|+|||++++|.+..+.|..+|++|+.+.+|+++++|||++||||.+|
T Consensus 89 v~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~~~v~~~~~~k~g~~IC~D~~f 168 (286)
T PLN02798 89 SLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKTIVAVDSPVGRLGLTVCYDLRF 168 (286)
T ss_pred EEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCeeeEEecCCceEEEEEEEcccC
Confidence 99977665324678999999999999999999999999999998777778899999999999999999999999999999
Q ss_pred hHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCC
Q 019580 220 PELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPD 299 (339)
Q Consensus 220 pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~ 299 (339)
|+++|.++.++|+|+|++|++|+...+..+|..+++.||+||++||+.+|++|.+.++..++|+|+|++|+|+++++++.
T Consensus 169 pe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~~~~ 248 (286)
T PLN02798 169 PELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVARLPD 248 (286)
T ss_pred hHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhhcCC
Confidence 99999986358999999999988766667888889999999999999999999876667889999999999999999875
Q ss_pred CCCceEEEEEeehhHHHHHHhcCCcccCCCCcccc
Q 019580 300 RLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW 334 (339)
Q Consensus 300 ~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~ 334 (339)
..++++++++||++.++..|..+++++|+++++++
T Consensus 249 ~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~ 283 (286)
T PLN02798 249 RLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFW 283 (286)
T ss_pred CCCCCEEEEEecHHHHHHHHHhCcchhccchhhhh
Confidence 33589999999999999999999999999999886
No 2
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-53 Score=359.54 Aligned_cols=277 Identities=56% Similarity=0.939 Sum_probs=260.9
Q ss_pred cccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEE
Q 019580 60 SSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWL 139 (339)
Q Consensus 60 ~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~i 139 (339)
+..+||++|+...+|...|++...+++.+|+++||++|.|||.+.+.|-++.+..++++..+++.++..+++|++++|++
T Consensus 14 ~~~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwl 93 (295)
T KOG0807|consen 14 KLKRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWL 93 (295)
T ss_pred ccceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeE
Confidence 44799999999999999999999999999999999999999998888888888888999999999999999999999999
Q ss_pred EEeeeeeecC-CCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCce-EEEecCCcceEEEeeccC
Q 019580 140 SLGGFQEKGS-DDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDI-VAVDSPVGRLGPTVCYDL 217 (339)
Q Consensus 140 v~Gs~~e~~~-~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~-~vf~~~~~kigv~IC~D~ 217 (339)
.+|+..++.+ ...+++|+-++|+.+|+++..|+|.|||+.++|++..+.|+....||... ..+++|-||+|..||||+
T Consensus 94 Slgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICYDi 173 (295)
T KOG0807|consen 94 SLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICYDI 173 (295)
T ss_pred EeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeeeec
Confidence 9999888753 23689999999999999999999999999999999999999999999975 569999999999999999
Q ss_pred cchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 218 RFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 218 ~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
+|||++-.+. +.||++|.+||++....+..+|+.+.++||+|++|||+.++.+|..+.....+|.|+|+||.|.|++++
T Consensus 174 RFpE~sl~LR-~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva~~ 252 (295)
T KOG0807|consen 174 RFPELSLKLR-KMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVARC 252 (295)
T ss_pred cCchHHHHHH-HcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhheec
Confidence 9999999999 899999999999999899999999999999999999999999999998889999999999999999999
Q ss_pred CCCCCceEEEEEeehhHHHHHHhcCCcccCCCCccccccc
Q 019580 298 PDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSA 337 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~~ 337 (339)
+.....+++.+|||++.++..|.++|.+++||.|+|.-.+
T Consensus 253 se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~~ 292 (295)
T KOG0807|consen 253 SERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLFS 292 (295)
T ss_pred CCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhhc
Confidence 9764589999999999999999999999999999997654
No 3
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.3e-51 Score=389.87 Aligned_cols=269 Identities=22% Similarity=0.345 Sum_probs=232.3
Q ss_pred cccEEEEEEecCc--------CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCC--c---chhhhhccC-CchHH
Q 019580 60 SSVRVAVAQMTSI--------NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKD--G---DSLKVAETL-DGPIM 125 (339)
Q Consensus 60 ~~~rVA~vQ~~~~--------~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~--~---~~~~~a~~~-~~~~~ 125 (339)
+.||||++|+++. +|+++|++++.+++++|+++|+|||||||+++ +||.. . .+.++++.. +++.+
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l-~g~~~~~~~~~~~~~~ae~~~~g~~~ 140 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWT-MPFAFCTREKLPWCEFAESAEDGPTT 140 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEcccccc-CCccccccccchHHHHhhccCCChHH
Confidence 5799999998843 58999999999999999999999999999984 66532 1 134556654 57899
Q ss_pred HHHHHHHHhcCcEEEEeeeeeecCC-CCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc-eEEEe
Q 019580 126 QGYCSLARESRVWLSLGGFQEKGSD-DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD-IVAVD 203 (339)
Q Consensus 126 ~~l~~~A~~~~i~iv~Gs~~e~~~~-~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~-~~vf~ 203 (339)
+.|+++|++++++|++| +.++..+ ++++||++++|+|+|+++++|+|+||+ ..+.+.|+.+|.+|+. +.+|+
T Consensus 141 ~~l~~lAk~~~i~Iv~g-i~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~-----~~~~~~E~~~f~~G~~~~~vf~ 214 (363)
T cd07587 141 KFCQELAKKYNMVIVSP-ILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIP-----RVGDFNESTYYMEGNTGHPVFE 214 (363)
T ss_pred HHHHHHHHHcCcEEEEe-eeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecC-----CCCCccceeEEecCCCCCceEE
Confidence 99999999999999877 6666321 468999999999999999999999994 3334679999999985 78999
Q ss_pred cCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC--------
Q 019580 204 SPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN-------- 275 (339)
Q Consensus 204 ~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-------- 275 (339)
++++|||++||||.+||+.++.++ ++|||++++|++|+......+|...+++||+||++||+.+|.+|.+.
T Consensus 215 t~~griG~~ICyD~~fPe~~r~la-~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~ 293 (363)
T cd07587 215 TQFGKIAVNICYGRHHPLNWLMYG-LNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSG 293 (363)
T ss_pred cCCceEEEEEecccCCcHHHHHHH-HcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccccccccccccccc
Confidence 999999999999999999999999 89999999999987655557899999999999999999999999752
Q ss_pred -------CCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCccccccc
Q 019580 276 -------DKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSA 337 (339)
Q Consensus 276 -------~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~~ 337 (339)
+...|+|+|+|++|+|+++.++... ++++++++||++.+++.|.+++++.++|+++|.++-
T Consensus 294 ~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~-~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~ 361 (363)
T cd07587 294 DGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRT-RDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFL 361 (363)
T ss_pred cccccccccccccceeEEECCCCCCccCCCCC-CCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHh
Confidence 1136889999999999999887754 689999999999999999999999999999998763
No 4
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=3.9e-51 Score=375.95 Aligned_cols=264 Identities=29% Similarity=0.473 Sum_probs=230.1
Q ss_pred cEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc----hhhhhccCC-chHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD----SLKVAETLD-GPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~----~~~~a~~~~-~~~~~~l~~~A~~~~ 136 (339)
||||++|+++.+|+++|++++.+++++|+++|+|||||||++ ++||...+ ..+.++... ++.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~-~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~ 79 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELF-EGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELG 79 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEccccc-CCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcC
Confidence 699999999889999999999999999999999999999997 57775432 233444332 478899999999999
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecCCcceEEEeec
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGPTVCY 215 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv~IC~ 215 (339)
++|++| +.++ +++++||++++++|+|++++.|+|+|| |..+.+.|..+|++|+ .+.+|+++++|+|++|||
T Consensus 80 i~i~~g-~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL-----~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~ 151 (279)
T TIGR03381 80 VVIPVS-FFEK--AGNAYYNSLAMIDADGSVLGVYRKSHI-----PDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICW 151 (279)
T ss_pred cEEEEe-eeec--CCCceEEeEEEECCCCCEEEEEEeeec-----CCCCCcccceeEccCCCCCceEecCCceEEEEEEc
Confidence 999998 5565 467899999999999999999999999 4333456888999998 589999999999999999
Q ss_pred cCcchHHHHHHHhcCCceEEEEeCCCCCC------CcHHHHHHHHHHHHHhcCcEEEEECCccCCC---CCCCcceeeEE
Q 019580 216 DLRFPELYQQLRFQHEAQVLLVPSAFTKV------TGQAHWEILLRARAIETQCYVIAAAQAGKHN---DKRESYGDSLI 286 (339)
Q Consensus 216 D~~~pe~~r~~~~~~gadlll~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~---~~~~~~G~S~I 286 (339)
|.+||+++|.++ ++|||+|++|++|+.. ....+|..+++.||+||++|++++|++|.+. ++..|.|.|+|
T Consensus 152 D~~fpe~~r~~a-~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i 230 (279)
T TIGR03381 152 DQWFPETARAMA-LMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFI 230 (279)
T ss_pred CCcChHHHHHHH-HcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEE
Confidence 999999999999 8999999999987542 2346788888999999999999999999872 45678999999
Q ss_pred ECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580 287 IDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS 336 (339)
Q Consensus 287 i~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~ 336 (339)
++|+|+++++++.+ ++++++++||++.++..|..+++++++||++|.+|
T Consensus 231 ~~p~G~il~~~~~~-~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~~ 279 (279)
T TIGR03381 231 ADHTGELVAEAGRS-EEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGPL 279 (279)
T ss_pred ECCCCcEeecCCCC-CCceEEEEeCHHHHHHHHhcCchhhhCChhhccCC
Confidence 99999999998876 68999999999999999999999999999999754
No 5
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=1.2e-50 Score=369.85 Aligned_cols=263 Identities=49% Similarity=0.858 Sum_probs=237.2
Q ss_pred EEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhh--hccCCchHHHHHHHHHHhcCcEEE
Q 019580 63 RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKV--AETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 63 rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~--a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
|||++|+++.+|+++|++++.+++++|+++|+|||||||++ ++||...+.... +....++.++.++++|++++++|+
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 79 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECF-NYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLV 79 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccc-cCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEE
Confidence 69999999889999999999999999999999999999997 578876554332 345567899999999999999999
Q ss_pred EeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcch
Q 019580 141 LGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFP 220 (339)
Q Consensus 141 ~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~p 220 (339)
+|++.++..+++++||++++++|+|++++.|+|+||+++++|.+..+.|..+|++|+.+.+|+++++|+|++||||.+||
T Consensus 80 ~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~~p 159 (265)
T cd07572 80 GGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDEVVVVDTPFGKIGLGICYDLRFP 159 (265)
T ss_pred EeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCcceEEecCCceEEEEEEeccCcH
Confidence 99887763223789999999999999999999999999888987777899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCCC
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDR 300 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~ 300 (339)
++++.++ ++|+|+|++|++++...+..+|..+++.||+||+++|+++|++|.+.+.+.++|+|+|++|+|+++.+++.+
T Consensus 160 e~~r~~~-~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il~~~~~~ 238 (265)
T cd07572 160 ELARALA-RQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVLAEAGEG 238 (265)
T ss_pred HHHHHHH-HCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcHHHhhcCCC
Confidence 9999999 899999999999877666678888899999999999999999998877778999999999999999998875
Q ss_pred CCceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580 301 LSTGIAVADIDFSLIDSVRAKMPIAKHRK 329 (339)
Q Consensus 301 ~~~~vl~~~id~~~~~~~r~~~~~~~~~~ 329 (339)
+++++++||++.+++.|..+++++|+|
T Consensus 239 --~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 239 --EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred --CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 889999999999999999999998875
No 6
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=2.4e-50 Score=372.31 Aligned_cols=270 Identities=27% Similarity=0.452 Sum_probs=233.2
Q ss_pred cccEEEEEEecCc--------CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc----hhhhhccC-CchHHH
Q 019580 60 SSVRVAVAQMTSI--------NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD----SLKVAETL-DGPIMQ 126 (339)
Q Consensus 60 ~~~rVA~vQ~~~~--------~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~----~~~~a~~~-~~~~~~ 126 (339)
++||||++|+++. ++.++|++++.+++++|+++|+|||||||++ .+||...+ +.+.++.. +++.++
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIF-YGPYFCAEQDTKWYEFAEEIPNGPTTK 80 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEccccc-CCCCCccccccchhhhcccCCCChHHH
Confidence 4699999999964 7889999999999999999999999999997 46764321 33445544 667899
Q ss_pred HHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecC
Q 019580 127 GYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSP 205 (339)
Q Consensus 127 ~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~ 205 (339)
.|+++|++++++|++| +.+.. .++++||++++|+|+|++++.|+|+||+ ....+.|..+|.+|+ .+.+|+++
T Consensus 81 ~l~~~a~~~~i~ii~g-~~~~~-~~~~~yNs~~~i~~~G~i~~~y~K~hL~-----~~~~~~e~~~f~~G~~~~~~f~~~ 153 (287)
T cd07568 81 RFAALAKEYNMVLILP-IYEKE-QGGTLYNTAAVIDADGTYLGKYRKNHIP-----HVGGFWEKFYFRPGNLGYPVFDTA 153 (287)
T ss_pred HHHHHHHHCCEEEEEE-eEEEc-CCCcEEEEEEEECCCCcEeeEEeeeecC-----CCCccceeeeecCCCCCCceEEcC
Confidence 9999999999999998 55542 3568999999999999999999999993 223356788899998 58999999
Q ss_pred CcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCC--CCccee
Q 019580 206 VGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDK--RESYGD 283 (339)
Q Consensus 206 ~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~--~~~~G~ 283 (339)
++|+|++||||.+||+++|.++ ++|+|+|++|++++.......|...++.||+||++|++.+|.+|.+... ..|.|.
T Consensus 154 ~~~iG~~ICyD~~fpe~~r~la-~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~ 232 (287)
T cd07568 154 FGKIGVYICYDRHFPEGWRALG-LNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGS 232 (287)
T ss_pred CceEEEEEEecccCchHHHHHH-HCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccCCCccceEece
Confidence 9999999999999999999999 8999999999998754445678878899999999999999999976432 478899
Q ss_pred eEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccccCC
Q 019580 284 SLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSASL 339 (339)
Q Consensus 284 S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~~~~ 339 (339)
|+|++|+|+++++++.+ ++++++++||++.++..|..+++++++|+++|+.+.+|
T Consensus 233 S~ii~p~G~il~~~~~~-~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~~~ 287 (287)
T cd07568 233 SYFVDPRGQFVASASRD-KDELLVAELDLDLIREVRDTWQFYRDRRPETYGELTKL 287 (287)
T ss_pred eEEECCCceEEEecCCC-CCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhhcC
Confidence 99999999999998876 78999999999999999999999999999999987654
No 7
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=3e-50 Score=384.40 Aligned_cols=268 Identities=22% Similarity=0.325 Sum_probs=233.2
Q ss_pred cccEEEEEEecCc--------CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCC----cchhhhhccCCchHHHH
Q 019580 60 SSVRVAVAQMTSI--------NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKD----GDSLKVAETLDGPIMQG 127 (339)
Q Consensus 60 ~~~rVA~vQ~~~~--------~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~----~~~~~~a~~~~~~~~~~ 127 (339)
+.||||++|.++. .+.++|++++.+++++|.++|+|||||||+++ +||.. ..+.+.++..+++..+.
T Consensus 85 ~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~-~g~~~~~~~~~~~~~ae~~~g~~~~~ 163 (405)
T PLN00202 85 RVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWT-MPFAFCTREKRWCEFAEPVDGESTKF 163 (405)
T ss_pred CeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhc-cccccccccchHHHHhhhCCCHHHHH
Confidence 5799999999963 58999999999999999999999999999974 56532 23455677777889999
Q ss_pred HHHHHHhcCcEEEEeeeeeecC-CCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc-eEEEecC
Q 019580 128 YCSLARESRVWLSLGGFQEKGS-DDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD-IVAVDSP 205 (339)
Q Consensus 128 l~~~A~~~~i~iv~Gs~~e~~~-~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~-~~vf~~~ 205 (339)
++++|++++++|++| +.++.. .++++|||+++|+++|+++++|+|+||++ ...+.|+.+|.+|+. ..+|+++
T Consensus 164 l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~-----~g~~~E~~~f~~G~~g~~vf~t~ 237 (405)
T PLN00202 164 LQELARKYNMVIVSP-ILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPR-----VGDFNESTYYMEGNTGHPVFETA 237 (405)
T ss_pred HHHHHHHCCeEEEEE-eeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCC-----CCCccccceeecCCCCceEEEeC
Confidence 999999999999998 666532 24579999999999999999999999953 223568889999986 6899999
Q ss_pred CcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC--------CC
Q 019580 206 VGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN--------DK 277 (339)
Q Consensus 206 ~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~--------~~ 277 (339)
++|||++||||.+|||++|.++ .+|||+|++|++|+......+|...+++||+||++||+.+|.+|.+. ++
T Consensus 238 ~gkiGv~ICYD~~FPE~~r~la-~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g 316 (405)
T PLN00202 238 FGKIAVNICYGRHHPLNWLAFG-LNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 316 (405)
T ss_pred CCeEEEEEccccccHHHHHHHH-HCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccccccccccccc
Confidence 9999999999999999999999 89999999999987655567899999999999999999999999753 11
Q ss_pred -------CCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580 278 -------RESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS 336 (339)
Q Consensus 278 -------~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~ 336 (339)
..|+|+|+|++|+|++++++... ++++++++||++.+++.|.++++++++|+++|.++
T Consensus 317 ~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~-~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~ 381 (405)
T PLN00202 317 KPQHKDFGHFYGSSHFSAPDASCTPSLSRY-KDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADF 381 (405)
T ss_pred cccccccccccceeEEEcCCCCEeccCCCC-CCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHH
Confidence 46899999999999999998754 68999999999999999999999999999999875
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=3.6e-49 Score=358.34 Aligned_cols=252 Identities=26% Similarity=0.406 Sum_probs=216.4
Q ss_pred cccEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccC-CchHHHHHHHHHHhcCc
Q 019580 60 SSVRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETL-DGPIMQGYCSLARESRV 137 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~-~~~~~~~l~~~A~~~~i 137 (339)
++||||++|+++. +|++.|++++.+++++| +|+|||||||++ ++||...+..+ .. .++..+.++++|+++++
T Consensus 2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~-~~Gy~~~~~~~---~~~~~~~~~~l~~~A~~~~~ 75 (256)
T PRK10438 2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMF-TTGFAMEAAAS---SLPQDDVVAWMTAKAQQTNA 75 (256)
T ss_pred CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcc-cCCCcccchhh---ccccchHHHHHHHHHHHcCe
Confidence 3599999999974 89999999999999875 699999999997 58886644221 12 34678899999999997
Q ss_pred EEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccC
Q 019580 138 WLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDL 217 (339)
Q Consensus 138 ~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~ 217 (339)
. ++|++.+. +++++|||+++|+|+|. +..|+|+||++. +.|..+|++|+++.+|+++++|+|++||||.
T Consensus 76 ~-i~g~~~~~--~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~-------~~E~~~f~~G~~~~v~~~~~~~iG~~ICyD~ 144 (256)
T PRK10438 76 L-IAGSVALQ--TESGAVNRFLLVEPGGT-VHFYDKRHLFRM-------ADEHLHYKAGNARVIVEWRGWRILPLVCYDL 144 (256)
T ss_pred E-EEEEEEEe--cCCCeEEEEEEEcCCCC-EEEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeec
Confidence 4 56766554 35678999999999997 579999999642 2578899999999999999999999999999
Q ss_pred cchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 218 RFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 218 ~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
+|||++|.+ +|+|+|++|++|+... ..+|..+.++||+||++||+++|++|.++++..|.|+|+|+||+|++++++
T Consensus 145 ~fPe~~r~l---~gad~i~~~s~~~~~~-~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~~ 220 (256)
T PRK10438 145 RFPVWSRNR---NDYDLALYVANWPAPR-SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIATA 220 (256)
T ss_pred CCHHHHHhh---cCCCEEEEecCCCCCc-hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEEc
Confidence 999999975 5899999999987643 457888899999999999999999998765678899999999999999998
Q ss_pred CCCCCceEEEEEeehhHHHHHHhcCCcccCCCCccc
Q 019580 298 PDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDF 333 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y 333 (339)
+.+ ++++++++||++.++..|..+|++++|++..|
T Consensus 221 ~~~-~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 221 EPH-QATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred CCC-CcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 875 68999999999999999999999999966554
No 9
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=5.7e-49 Score=362.51 Aligned_cols=266 Identities=30% Similarity=0.494 Sum_probs=232.7
Q ss_pred cEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc----hhhhhc-cCCchHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD----SLKVAE-TLDGPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~----~~~~a~-~~~~~~~~~l~~~A~~~~ 136 (339)
||||++|+++.+|++.|++++.+++++|.++|+|||||||++ ++||...+ ....++ ....+.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELF-ETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccc-cCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCC
Confidence 699999999989999999999999999999999999999997 57775432 333444 556678899999999999
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecCCcceEEEeec
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGPTVCY 215 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv~IC~ 215 (339)
++|++|. .++. +++++||++++++|+|+++.+|+|+|| |..+.+.|..+|.+|+ .+.+|+++++|+|++|||
T Consensus 80 i~iv~g~-~~~~-~~~~~yNs~~v~~~~G~i~~~y~K~~l-----~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~ 152 (284)
T cd07573 80 VVIPVSL-FEKR-GNGLYYNSAVVIDADGSLLGVYRKMHI-----PDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICW 152 (284)
T ss_pred EEEEecc-eeeC-CCCcEEEEEEEECCCCCEEeEEeeecc-----CCCCcccccceecCCCCCCceEecCCceEEEEEec
Confidence 9999985 4542 356899999999999999999999998 4433456888899999 899999999999999999
Q ss_pred cCcchHHHHHHHhcCCceEEEEeCCCCCC--------CcHHHHHHHHHHHHHhcCcEEEEECCccCCC---CCCCcceee
Q 019580 216 DLRFPELYQQLRFQHEAQVLLVPSAFTKV--------TGQAHWEILLRARAIETQCYVIAAAQAGKHN---DKRESYGDS 284 (339)
Q Consensus 216 D~~~pe~~r~~~~~~gadlll~ps~~~~~--------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~---~~~~~~G~S 284 (339)
|.+||++++.++ ++|+|+|++|+++++. .....|..+++.||+||++|++++|++|.+. .+..|.|+|
T Consensus 153 D~~fpe~~r~~~-~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S 231 (284)
T cd07573 153 DQWFPEAARLMA-LQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSS 231 (284)
T ss_pred cccchHHHHHHH-HCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeecee
Confidence 999999999999 8999999999887543 2236788888999999999999999999765 257899999
Q ss_pred EEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCccccccc
Q 019580 285 LIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKSA 337 (339)
Q Consensus 285 ~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~~ 337 (339)
+|++|+|+++++++.+ ++++++++||++.++.+|..++++.++|+++|+.+.
T Consensus 232 ~i~~p~G~i~~~~~~~-~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 232 FIADPFGEILAQASRD-EEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred EEECCCCCeeeccCCC-CCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 9999999999999876 799999999999999999999999999999998754
No 10
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=1.3e-48 Score=362.21 Aligned_cols=268 Identities=27% Similarity=0.423 Sum_probs=230.9
Q ss_pred cCcccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCc----chhhhhccCC-chHHHHHHHHH
Q 019580 58 GASSVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDG----DSLKVAETLD-GPIMQGYCSLA 132 (339)
Q Consensus 58 ~~~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~----~~~~~a~~~~-~~~~~~l~~~A 132 (339)
|.++||||++|+++.+|++.|++++.+++++|.++|+|||||||++ ++||... ++.+.++... ++.++.++++|
T Consensus 3 ~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 81 (296)
T PLN02747 3 MGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELF-EGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA 81 (296)
T ss_pred CCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEccccc-CCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence 3467999999999889999999999999999999999999999997 4676532 3344444433 36889999999
Q ss_pred HhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecCCcceEE
Q 019580 133 RESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGP 211 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv 211 (339)
++++++|++| +.++ +++++||++++++|+|+++++|+|+|| |.+..+.|..+|++|+ .+.+|+++++|+|+
T Consensus 82 ~~~~i~i~~g-~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL-----~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~ 153 (296)
T PLN02747 82 KELGVVIPVS-FFEE--ANNAHYNSIAIIDADGTDLGLYRKSHI-----PDGPGYQEKFYFNPGDTGFKVFDTKFAKIGV 153 (296)
T ss_pred HHcCeEEEee-eeec--CCCceEEEEEEECCCCCCcceEEEEec-----CCCCCccceeeecCCCCCCeeEEcCCccEEE
Confidence 9999999988 5554 567899999999999999999999999 4434456778899997 58999999999999
Q ss_pred EeeccCcchHHHHHHHhcCCceEEEEeCCCCCC------CcHHHHHHHHHHHHHhcCcEEEEECCccCCC-------CCC
Q 019580 212 TVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKV------TGQAHWEILLRARAIETQCYVIAAAQAGKHN-------DKR 278 (339)
Q Consensus 212 ~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-------~~~ 278 (339)
+||||.+||++++.++ ++|+|+|++|++|+.. ....+|..+++.||.||++||+++|.+|.+. ...
T Consensus 154 ~IC~D~~fpe~~r~~~-~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~ 232 (296)
T PLN02747 154 AICWDQWFPEAARAMV-LQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKI 232 (296)
T ss_pred EEEccccchHHHHHHH-HCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCc
Confidence 9999999999999999 8999999999987432 1236788889999999999999999999642 246
Q ss_pred CcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580 279 ESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS 336 (339)
Q Consensus 279 ~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~ 336 (339)
.|+|+|+|++|+|+++++.+.+ ++++++++||++.++..|..+++++++|+++|..+
T Consensus 233 ~~~G~S~i~~p~G~vl~~~~~~-~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~ 289 (296)
T PLN02747 233 TFYGGSFIAGPTGEIVAEADDK-AEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVL 289 (296)
T ss_pred eEeeeeEEECCCCCEeecCCCC-CCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHH
Confidence 7889999999999999998876 68999999999999999999999999999999754
No 11
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=9.7e-49 Score=363.07 Aligned_cols=258 Identities=29% Similarity=0.426 Sum_probs=222.2
Q ss_pred cEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc-----------h---hhhhccCCchHHH
Q 019580 62 VRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD-----------S---LKVAETLDGPIMQ 126 (339)
Q Consensus 62 ~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~-----------~---~~~a~~~~~~~~~ 126 (339)
||||++|+++ .+|+++|++++.+++++|+++|+|||||||++ ++||...+ + .+.+...+++.++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~-l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAF-IPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecccc-ccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHH
Confidence 6999999996 58999999999999999999999999999997 57776421 1 1223345678999
Q ss_pred HHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC--ceEEEec
Q 019580 127 GYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK--DIVAVDS 204 (339)
Q Consensus 127 ~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~--~~~vf~~ 204 (339)
.|+++|++++++|++| +.++ +++++||++++|+|+|+++++|+|+||+. .|..+|.+|+ .+.+|++
T Consensus 80 ~l~~~a~~~~i~iv~G-~~~~--~~~~~yNs~~vi~~~G~i~~~y~K~~l~~---------~E~~~~~~g~~~~~~v~~~ 147 (297)
T cd07564 80 RLAEAARENGIYVVLG-VSER--DGGTLYNTQLLIDPDGELLGKHRKLKPTH---------AERLVWGQGDGSGLRVVDT 147 (297)
T ss_pred HHHHHHHHcCcEEEEe-eEec--cCCceEEEEEEEcCCCCEeeeeeccCCCc---------hhhhhcccCCCCCceEEec
Confidence 9999999999999999 5554 46789999999999999999999999842 4777888876 5789999
Q ss_pred CCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCC--CCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC-------
Q 019580 205 PVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAF--TKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN------- 275 (339)
Q Consensus 205 ~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~--~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~------- 275 (339)
+++|||++||||.+|||+++.++ ++|||++++++.. ....+..+|..++++||+||++||+.||.+|.++
T Consensus 148 ~~~kig~~ICyD~~fPe~~r~~a-~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~ 226 (297)
T cd07564 148 PIGRLGALICWENYMPLARYALY-AQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCE 226 (297)
T ss_pred CCceEEEEEEhhcCCHHHHHHHH-HCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccc
Confidence 99999999999999999999999 8999999987543 2234567899999999999999999999999642
Q ss_pred -------CCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccC-CCCcccc
Q 019580 276 -------DKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKH-RKSIDFW 334 (339)
Q Consensus 276 -------~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~-~~~~~Y~ 334 (339)
+...+.|.|+|++|+|+++++++.+ ++++++++||++.++..|..+|++++ +|||+|.
T Consensus 227 ~~~~~~~~~~~~~G~S~iv~P~G~il~~~~~~-~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~ 292 (297)
T cd07564 227 DDEEADPLEVLGGGGSAIVGPDGEVLAGPLPD-EEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFS 292 (297)
T ss_pred cccccccccccCCCceEEECCCCCeecCCCCC-CceEEEEEecHHHHHHHHhcCCCCCCCCCchhhc
Confidence 2356899999999999999998765 79999999999999999999999999 6999995
No 12
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.4e-48 Score=350.23 Aligned_cols=252 Identities=36% Similarity=0.628 Sum_probs=225.2
Q ss_pred EEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 63 RVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 63 rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
|||++|+++. +|++.|++++.+++++|.++|+|||||||++ ++||...+....+....++.++.++++|++++++|++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~-l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 79 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMW-NTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA 79 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCcc-CCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe
Confidence 6999999975 8999999999999999999999999999997 5788765544445566788999999999999999999
Q ss_pred eeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcchH
Q 019580 142 GGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPE 221 (339)
Q Consensus 142 Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~pe 221 (339)
|+..+. +++++||++++++|+|+++..|+|+||++ + +.|..+|.+|+.+.+|+++++|+|++||||.+|||
T Consensus 80 G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~l~~----~---~~e~~~~~~G~~~~v~~~~~~rig~~IC~D~~~pe 150 (253)
T cd07583 80 GSVAEK--EGGKLYNTAYVIDPDGELIATYRKIHLFG----L---MGEDKYLTAGDELEVFELDGGKVGLFICYDLRFPE 150 (253)
T ss_pred ceEEec--CCCcEEEEEEEECCCCcEEEEEeeeeCCC----C---cCchhhccCCCCceEEEeCCeEEEEEEEeccccHH
Confidence 976665 46789999999999999999999999953 2 25778899999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCCCC
Q 019580 222 LYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRL 301 (339)
Q Consensus 222 ~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~~ 301 (339)
+.+.++ ++|||+|++|++|+.. ...+|..+++.||+||++|++++|++|.+. ++.|.|.|+|++|+|+++++++.
T Consensus 151 ~~r~~~-~~ga~ll~~ps~~~~~-~~~~~~~~~~~rA~en~~~vv~~n~~G~~~-~~~~~G~S~ii~p~G~il~~~~~-- 225 (253)
T cd07583 151 LFRKLA-LEGAEILFVPAEWPAA-RIEHWRTLLRARAIENQAFVVACNRVGTDG-GNEFGGHSMVIDPWGEVLAEAGE-- 225 (253)
T ss_pred HHHHHH-HcCCcEEEECCCCCCC-chHHHHHHHHHHHHHhCCEEEEEcCcccCC-CceecceeEEECCCchhheecCC--
Confidence 999999 8999999999988654 356788889999999999999999999865 45788999999999999999886
Q ss_pred CceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580 302 STGIAVADIDFSLIDSVRAKMPIAKHRK 329 (339)
Q Consensus 302 ~~~vl~~~id~~~~~~~r~~~~~~~~~~ 329 (339)
+++++++++|++.++.+|..+++++|||
T Consensus 226 ~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 226 EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 5899999999999999999999999886
No 13
>PLN02504 nitrilase
Probab=100.00 E-value=7.9e-48 Score=362.46 Aligned_cols=259 Identities=27% Similarity=0.445 Sum_probs=223.2
Q ss_pred cCcccEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc-------------------hhhhh
Q 019580 58 GASSVRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD-------------------SLKVA 117 (339)
Q Consensus 58 ~~~~~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~-------------------~~~~a 117 (339)
..++||||++|.++ ..|.+.|++++.+++++|.++|+|||||||++ ++||.... ....+
T Consensus 21 ~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~-ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (346)
T PLN02504 21 SSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAF-IGGYPRGSTFGLAIGDRSPKGREDFRKYHASA 99 (346)
T ss_pred cCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccc-cccCCcchhhccccccccchhHHHHHHHHHhc
Confidence 34579999999997 48999999999999999999999999999997 57875311 11234
Q ss_pred ccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC
Q 019580 118 ETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK 197 (339)
Q Consensus 118 ~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~ 197 (339)
...+++.++.|+++|++++++|++| +.++ +++++||++++|+|+|+++++|+|+|++. .|+.+|.+|.
T Consensus 100 ~~~~g~~i~~l~~~A~~~~i~iv~G-~~e~--~~~~~yNsa~~i~~~G~i~~~yrK~~p~~---------~E~~~f~~G~ 167 (346)
T PLN02504 100 IDVPGPEVDRLAAMAGKYKVYLVMG-VIER--DGYTLYCTVLFFDPQGQYLGKHRKLMPTA---------LERLIWGFGD 167 (346)
T ss_pred ccCCCHHHHHHHHHHHHcCCEEEEe-eeec--CCCceEEEEEEECCCCCEEeEEeeccCCc---------ccceeeecCC
Confidence 4557789999999999999999999 4565 56789999999999999999999998742 4777888876
Q ss_pred --ceEEEecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC--
Q 019580 198 --DIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK-- 273 (339)
Q Consensus 198 --~~~vf~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~-- 273 (339)
.+.+|+++++|||++||||.+||+++|.++ ++|||++++|+++. ..+|..+++.||+||++||+.+|.+|.
T Consensus 168 g~~~~vf~~~~griG~lICyD~~fPe~~r~la-~~Gadii~~p~~~~----~~~w~~~~rarA~En~~~Vv~aN~vg~~~ 242 (346)
T PLN02504 168 GSTIPVYDTPIGKIGAVICWENRMPLLRTAMY-AKGIEIYCAPTADS----RETWQASMRHIALEGGCFVLSANQFCRRK 242 (346)
T ss_pred CCCCceEEcCCceEEEEEeccchhHHHHHHHH-HCCCeEEEECCCCC----chhHHHHHHHHHHccCcEEEEeccccccc
Confidence 678999999999999999999999999999 89999999998774 357888899999999999999999962
Q ss_pred -------------CC----CCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCC-CCccccc
Q 019580 274 -------------HN----DKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHR-KSIDFWK 335 (339)
Q Consensus 274 -------------~~----~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~-~~~~Y~~ 335 (339)
+. +.+.|.|+|+|++|+|+++++.... ++++++++||++.++..|..+++++|+ |||+|.-
T Consensus 243 ~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~-~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l 321 (346)
T PLN02504 243 DYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYE-GEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSL 321 (346)
T ss_pred ccCcccccccccccccccccccccCcceEEECCCCCEecCCCCC-CCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEE
Confidence 11 2357889999999999999887643 689999999999999999999999998 9999965
No 14
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=8.9e-48 Score=348.85 Aligned_cols=252 Identities=34% Similarity=0.504 Sum_probs=222.4
Q ss_pred EEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcch-hhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 63 RVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDS-LKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 63 rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~-~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
|||++|+++ .+|+++|++++.+++++|.++|+|||||||++ ++||...+. ...+....++.++.++++|++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~-l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELF-LTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCcc-ccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEE
Confidence 799999997 59999999999999999999999999999997 578876442 223444567899999999999999999
Q ss_pred EeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcch
Q 019580 141 LGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFP 220 (339)
Q Consensus 141 ~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~p 220 (339)
+| +.++ .++++||++++++|+|++++.|+|+||++ ..|..+|.+|+++.+|+++++|+|++||||.+||
T Consensus 80 ~G-~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~l~~--------~~E~~~~~~G~~~~v~~~~~~kig~~IC~D~~fp 148 (254)
T cd07576 80 VG-YPER--AGGAVYNAAVLIDEDGTVLANYRKTHLFG--------DSERAAFTPGDRFPVVELRGLRVGLLICYDVEFP 148 (254)
T ss_pred Ee-cccc--CCCceEEEEEEECCCCCEeeEEEeeccCC--------cchhhhccCCCCceEEEECCeEEEEEEeecCCCC
Confidence 99 5665 46789999999999999999999999954 1477889999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCCC
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDR 300 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~ 300 (339)
++++.++ ++|||+|++|++++...+ .+|..+++.||+||++|++++|++|.+++ ..|.|+|+|++|+|+++++++.+
T Consensus 149 e~~~~~~-~~gadii~~p~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~~~-~~~~G~S~i~~p~G~il~~~~~~ 225 (254)
T cd07576 149 ELVRALA-LAGADLVLVPTALMEPYG-FVARTLVPARAFENQIFVAYANRCGAEDG-LTYVGLSSIAGPDGTVLARAGRG 225 (254)
T ss_pred HHHHHHH-HCCCCEEEECCccCCCcc-hhhhhhhHHHHHhCCCEEEEEcccCCCCC-ceeeeeeEEECCCCCEeEecCCC
Confidence 9999999 899999999987765433 45677899999999999999999997654 57899999999999999998875
Q ss_pred CCceEEEEEeehhHHHHHHhcCCcccCCCCc
Q 019580 301 LSTGIAVADIDFSLIDSVRAKMPIAKHRKSI 331 (339)
Q Consensus 301 ~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~ 331 (339)
+++++++||++.++..|..+|+++|+|++
T Consensus 226 --e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 226 --EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred --CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 88999999999999999999999999875
No 15
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.6e-48 Score=351.52 Aligned_cols=255 Identities=32% Similarity=0.472 Sum_probs=220.9
Q ss_pred EEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchh---hhhc-cCCchHHHHHHHHHHhcCc
Q 019580 63 RVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSL---KVAE-TLDGPIMQGYCSLARESRV 137 (339)
Q Consensus 63 rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~---~~a~-~~~~~~~~~l~~~A~~~~i 137 (339)
|||++|+++. ++.++|++++.+++++|.++|+|||||||++ ++||...+.. ...+ ..+++.++.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELA-NTGYVFESRDEAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcc-cccCCCCCHHHHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 6999999975 8999999999999999999999999999997 5777654421 1222 3345688999999999999
Q ss_pred EEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc-eEEEecCCcceEEEeecc
Q 019580 138 WLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD-IVAVDSPVGRLGPTVCYD 216 (339)
Q Consensus 138 ~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~-~~vf~~~~~kigv~IC~D 216 (339)
+|++| +.++ +++++||++++++++|. +..|+|+||++ .|..+|++|+. +.+|+++++|+|++||||
T Consensus 80 ~i~~G-~~~~--~~~~~yNs~~vi~~~g~-~~~y~K~~l~~---------~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D 146 (268)
T cd07580 80 YIVAG-FAER--DGDRLYNSAVLVGPDGV-IGTYRKAHLWN---------EEKLLFEPGDLGLPVFDTPFGRIGVAICYD 146 (268)
T ss_pred EEEee-cccc--cCCceEEEEEEECCCCc-EEEEEEecCCc---------hhcceecCCCCCCceEEcCCCcEEEEEECc
Confidence 99998 5565 46689999999999995 79999999963 37788999997 999999999999999999
Q ss_pred CcchHHHHHHHhcCCceEEEEeCCCCCCCcH-----HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCC
Q 019580 217 LRFPELYQQLRFQHEAQVLLVPSAFTKVTGQ-----AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWG 291 (339)
Q Consensus 217 ~~~pe~~r~~~~~~gadlll~ps~~~~~~~~-----~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G 291 (339)
.+||++++.++ .+|||+|++|++|+...+. .+|..+.++||+||++||+++|.+|.+.+ ..++|+|+|++|+|
T Consensus 147 ~~fpe~~r~~~-~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~~-~~~~G~S~ii~p~G 224 (268)
T cd07580 147 GWFPETFRLLA-LQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGTERG-QPFIGQSLIVGPDG 224 (268)
T ss_pred ccchHHHHHHH-HcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeeeccC-ceEeeeeEEECCCC
Confidence 99999999999 8999999999998765432 46777889999999999999999998643 57889999999999
Q ss_pred CeeeecCCCCCceEEEEEeehhHHHHHHhc--CCcccCCCCccc
Q 019580 292 TVIGRLPDRLSTGIAVADIDFSLIDSVRAK--MPIAKHRKSIDF 333 (339)
Q Consensus 292 ~ii~~~~~~~~~~vl~~~id~~~~~~~r~~--~~~~~~~~~~~Y 333 (339)
+++++++.+.++++++++||++.++.+|.. +|+++++|+++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 225 WPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred CeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 999998743368999999999999999988 589999999988
No 16
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.8e-48 Score=354.40 Aligned_cols=246 Identities=36% Similarity=0.475 Sum_probs=206.3
Q ss_pred EEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 63 RVAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 63 rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
|||++|+++..|+++|++++.+++++|+++|+|||||||++ ++||.... ..++...++.++.++++|++++++|++|
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~-ltG~~~~~--~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELA-LTGLDDPA--SEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCcc-ccCCCChH--HhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 69999999877999999999999999999999999999997 57876532 2345556789999999999999999999
Q ss_pred eeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcchHH
Q 019580 143 GFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFPEL 222 (339)
Q Consensus 143 s~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~pe~ 222 (339)
..++ +++++||++++++++| +++.|+|.||++ .|..+|++|+.+.+|+++++|+|++||||.+|||+
T Consensus 78 -~~~~--~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~---------~E~~~f~~G~~~~v~~~~~~kiG~~ICyD~~fPe~ 144 (279)
T cd07579 78 -FAEA--DGDGLYNSAVLVGPEG-LVGTYRKTHLIE---------PERSWATPGDTWPVYDLPLGRVGLLIGHDALFPEA 144 (279)
T ss_pred -ceEc--cCCcEEEEEEEEeCCe-eEEEEecccCCC---------cchhhccCCCCCeeEEcCceeEEEEEeccccCcHH
Confidence 4555 4568999999999999 679999999953 37788999999999999999999999999999999
Q ss_pred HHHHHhcCCceEEEEeCCCCC-----------------CCc--HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCccee
Q 019580 223 YQQLRFQHEAQVLLVPSAFTK-----------------VTG--QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGD 283 (339)
Q Consensus 223 ~r~~~~~~gadlll~ps~~~~-----------------~~~--~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~ 283 (339)
+|.++ ++|||+|++|++|+. ..+ ..+|. ++++||+||++||++||.+|.+ ..+.|.
T Consensus 145 ~r~~a-~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~---~~~~G~ 219 (279)
T cd07579 145 GRVLA-LRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA---RGYTGW 219 (279)
T ss_pred HHHHH-HCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc---cccccc
Confidence 99999 899999999998743 111 14676 6899999999999999999875 247899
Q ss_pred eEEECCCCCeeee----cCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccc
Q 019580 284 SLIIDPWGTVIGR----LPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW 334 (339)
Q Consensus 284 S~Ii~p~G~ii~~----~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~ 334 (339)
|+|++|+|.++.. +. ++|++++++||++.+++ .++++++||+|+|.
T Consensus 220 S~ii~P~G~v~~~~~~~~~--~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~ 269 (279)
T cd07579 220 SGVFGPDTFAFPRQEAAIG--DEEGIAWALIDTSNLDS---RYPTNVVRRKDLVR 269 (279)
T ss_pred cEEECCCeEEcchhhcccC--CCCcEEEEEecchhhcc---cCCchhhhhHHHHH
Confidence 9999999999733 33 35889999999998876 34555555555543
No 17
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=1.6e-47 Score=355.73 Aligned_cols=272 Identities=28% Similarity=0.353 Sum_probs=225.8
Q ss_pred cccEEEEEEecCc-C--CHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc-------hhhhhc-cCCchHHHHH
Q 019580 60 SSVRVAVAQMTSI-N--DLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD-------SLKVAE-TLDGPIMQGY 128 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~--d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~-------~~~~a~-~~~~~~~~~l 128 (339)
++||||++|+++. + +.++|++++.+++++|+++|+|||||||++ ++||.+.. ...+.+ ..+++..+.+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELA-LTTFFPRWYFPDEAELDSFFETEMPNPETQPL 80 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEccccc-ccCcccccccCChHHhhhhhhhcCCChhHHHH
Confidence 3599999999864 3 889999999999999999999999999997 57764321 111122 2566788999
Q ss_pred HHHHHhcCcEEEEeeeeeecCCCC---ceEEEEEEEcCCCceeeeeeecccc--cccCCCCC-cccccccccCCC-ceEE
Q 019580 129 CSLARESRVWLSLGGFQEKGSDDA---HLCNTHVLVDDAGNIRSTYRKMHLF--DVDIPGGR-SYKESSFTEAGK-DIVA 201 (339)
Q Consensus 129 ~~~A~~~~i~iv~Gs~~e~~~~~~---~~yNsa~li~p~G~v~~~y~K~~L~--~~~vP~~~-~~~E~~~~~~G~-~~~v 201 (339)
+++|++++++|++| +.+.. .++ ++||++++|+|+|+++++|+|+||+ +++.|... .+.|..+|.+|+ .+.+
T Consensus 81 ~~~a~~~~i~iv~G-~~~~~-~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v 158 (302)
T cd07569 81 FDRAKELGIGFYLG-YAELT-EDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPV 158 (302)
T ss_pred HHHHHHhCeEEEEe-ceeec-CCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCce
Confidence 99999999999999 55542 233 8999999999999999999999994 44555332 123778899999 8999
Q ss_pred EecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCC---------cHHHHHHHHHHHHHhcCcEEEEECCcc
Q 019580 202 VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVT---------GQAHWEILLRARAIETQCYVIAAAQAG 272 (339)
Q Consensus 202 f~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~---------~~~~~~~~~~~rA~en~~~vv~an~~G 272 (339)
|+++++|||++||||.+||+++|.++ .+|+|+|++|+++.... ...+|...+++||+||++||+++|++|
T Consensus 159 ~~~~~~rig~~IC~D~~fpe~~r~~a-~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G 237 (302)
T cd07569 159 FRVPGGIMGMCICNDRRWPETWRVMG-LQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAG 237 (302)
T ss_pred EecCCceEEEEEeeccccchHHHHHH-HCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccc
Confidence 99999999999999999999999999 89999999975542211 123566678899999999999999999
Q ss_pred CCCCCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhc-CCcccCCCCccccccc
Q 019580 273 KHNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAK-MPIAKHRKSIDFWKSA 337 (339)
Q Consensus 273 ~~~~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~-~~~~~~~~~~~Y~~~~ 337 (339)
.+. +..++|+|+|++|+|+++++++.+ ++++++++||++.++..|.. .+++.++|+++|.++.
T Consensus 238 ~~~-~~~~~G~S~ii~p~G~vla~~~~~-~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 238 MED-GCDLIGGSCIVAPTGEIVAQATTL-EDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred cCC-CceEecceEEECCCCCEEEecCCC-CCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 865 468899999999999999999876 68999999999999999985 8999999999998653
No 18
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.9e-47 Score=344.94 Aligned_cols=252 Identities=34% Similarity=0.611 Sum_probs=221.5
Q ss_pred EEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc----hhhhhccCCchHHHHHHHHHHhcCc
Q 019580 63 RVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD----SLKVAETLDGPIMQGYCSLARESRV 137 (339)
Q Consensus 63 rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~----~~~~a~~~~~~~~~~l~~~A~~~~i 137 (339)
|||++|+++ .+|++.|++++++++++|.++|+|||||||++ ++||...+ ..+.++..+++.++.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELA-TTGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEccccc-ccCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCe
Confidence 699999996 48999999999999999999999999999997 57886543 2234455667789999999999999
Q ss_pred EEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccC
Q 019580 138 WLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDL 217 (339)
Q Consensus 138 ~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~ 217 (339)
+|++|. .+...+++++||++++++|+|+++..|+|+||++ .|..+|++|+.+.+|+++++|+|++||||.
T Consensus 80 ~i~~G~-~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~g~~IC~D~ 149 (258)
T cd07584 80 YIVCGF-VEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG---------LEKQYFREGEQYPVFDTPFGKIGVMICYDM 149 (258)
T ss_pred EEEEee-hcccCCCCceEEEEEEECCCCCEEeEEEeecCCc---------hhhhhccCCCCCeeEEcCCceEEEEEEcCc
Confidence 999995 4543234689999999999999999999999953 366789999999999999999999999999
Q ss_pred cchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 218 RFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 218 ~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
+||++.|.++ ++|+|+|++|++|+.. ....|....+.||+||++||+.+|.+|.+++ ..+.|+|+|++|+|++++++
T Consensus 150 ~fpe~~r~~~-~~gadll~~ps~~~~~-~~~~~~~~~~~rA~En~~~vv~~n~~g~~~~-~~~~G~S~ii~p~G~il~~~ 226 (258)
T cd07584 150 GFPEVARILT-LKGAEVIFCPSAWREQ-DADIWDINLPARALENTVFVAAVNRVGNEGD-LVLFGKSKILNPRGQVLAEA 226 (258)
T ss_pred cChHHHHHHH-HCCCcEEEECCccCCC-CchHHHHHHHHHHHhCCcEEEEECccccCCC-ceecceeEEECCCCceeeec
Confidence 9999999999 8999999999988654 3467777899999999999999999987543 57889999999999999999
Q ss_pred CCCCCceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580 298 PDRLSTGIAVADIDFSLIDSVRAKMPIAKHRK 329 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~ 329 (339)
+.+ ++++++++||++.++..|.+.|+++++|
T Consensus 227 ~~~-~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 227 SEE-AEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred CCC-CCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 876 6899999999999999999999999986
No 19
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5.3e-47 Score=345.26 Aligned_cols=254 Identities=32% Similarity=0.531 Sum_probs=222.9
Q ss_pred EEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhh-hccCCchHHHHHHHHHHhcCcEEE
Q 019580 63 RVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKV-AETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 63 rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~-a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
|||++|+++ .+|++.|++++++++++|+++|+|||||||++ ++||...+.... +....++.++.++++|++++++|+
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~-l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~ 79 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMC-ITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTIL 79 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccc-cccccCCcccchhcccCCChHHHHHHHHHHHcCcEEE
Confidence 699999997 48999999999999999999999999999997 578876543322 334456789999999999999999
Q ss_pred EeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcch
Q 019580 141 LGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFP 220 (339)
Q Consensus 141 ~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~p 220 (339)
+|.. ++ +++++||++++|+|+|. +..|+|.||++ .|..+|++|+.+.+|+++++|+|++||||.+||
T Consensus 80 ~G~~-~~--~~~~~yNs~~vi~~~g~-i~~y~K~~l~~---------~E~~~~~~G~~~~v~~~~~~rig~~IC~D~~~p 146 (261)
T cd07585 80 AGLI-EK--AGDRPYNTYLVCLPDGL-VHRYRKLHLFR---------REHPYIAAGDEYPVFATPGVRFGILICYDNHFP 146 (261)
T ss_pred Eecc-cc--CCCceeEEEEEECCCCc-EeEEeeecCCc---------cccceEcCCCCCceEEcCCceEEEEEEcCCcCc
Confidence 9954 55 46799999999999997 58999999953 367789999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCC---cHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVT---GQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~---~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
++++.++ ++|+|+|++|++++... ....|...++.||+||++|++++|.+|..+ +..+.|.|+|++|+|++++++
T Consensus 147 e~~r~l~-~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~-~~~~~G~S~i~~p~G~v~~~~ 224 (261)
T cd07585 147 ENVRATA-LLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGRDG-GEVFPGGAMILDPYGRVLAET 224 (261)
T ss_pred HHHHHHH-HCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEecccccCC-CceecceEEEECCCCCEEecc
Confidence 9999999 89999999998776433 246777789999999999999999999765 567899999999999999999
Q ss_pred CCCCCceEEEEEeehhHHHHHHhc--CCcccCCCCccc
Q 019580 298 PDRLSTGIAVADIDFSLIDSVRAK--MPIAKHRKSIDF 333 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~~~~~r~~--~~~~~~~~~~~Y 333 (339)
+.+ ++++++++||++.++..|.+ .++++|+|+++|
T Consensus 225 ~~~-~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 225 TSG-GDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred CCC-CCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 876 79999999999999999986 678999999988
No 20
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=1.2e-46 Score=347.50 Aligned_cols=247 Identities=23% Similarity=0.341 Sum_probs=214.6
Q ss_pred cEEEEEEecC-----cCCHHHHHHHHHHHHHHHHH--CCCeEEEeCCCCCCCCCCCc--chhhhhccCCchHHHHHHHHH
Q 019580 62 VRVAVAQMTS-----INDLAANFATSSRLVKEAAS--AGAKLLCLPENFSYVGDKDG--DSLKVAETLDGPIMQGYCSLA 132 (339)
Q Consensus 62 ~rVA~vQ~~~-----~~d~~~n~~~~~~~i~~A~~--~gadlIVfPE~~~~~g~~~~--~~~~~a~~~~~~~~~~l~~~A 132 (339)
++||++|+++ .+++++|++++.+++++|++ +|+|||||||++ ++||..+ ...+.++..+++.++.++++|
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~-ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYS-TQGLMYDKWTMDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcc-cccCCCCcchhhhhccCCCChhHHHHHHHH
Confidence 4799999997 48999999999999999986 599999999997 5787642 345566677788999999999
Q ss_pred HhcCcEEEEeeeeeecCCC--CceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc-eEEEecC-Ccc
Q 019580 133 RESRVWLSLGGFQEKGSDD--AHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD-IVAVDSP-VGR 208 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~--~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~-~~vf~~~-~~k 208 (339)
+++++++++| +.++. .+ +++||++++|+|+|+++.+|+|+|||. | ...|.+|+. +.+|+++ ++|
T Consensus 80 ~~~~i~i~~g-~~e~~-~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~---~-------~e~~~~G~~~~~v~~~~~g~r 147 (291)
T cd07565 80 KEAKVWGVFS-IMERN-PDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV---P-------IEPWYPGDLGTPVCEGPKGSK 147 (291)
T ss_pred HHCCeEEEEE-eeeec-CCCCCceEEEEEEECCCCcEEEEEEecccCC---C-------cccccCCCCCceeeECCCCCE
Confidence 9999999998 55653 23 689999999999999999999999853 1 234689987 8899986 669
Q ss_pred eEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEEC
Q 019580 209 LGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIID 288 (339)
Q Consensus 209 igv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~ 288 (339)
||++||||.+|||++|.++ ++|||+|++|++|+... ..+|..+++.||+||++||+++|++|.++ +..++|+|+|++
T Consensus 148 iG~~ICyD~~fPe~~r~la-~~GAdill~ps~~~~~~-~~~w~~~~~aRA~En~~~vv~aN~~G~~~-~~~~~G~S~ivd 224 (291)
T cd07565 148 IALIICHDGMYPEIARECA-YKGAELIIRIQGYMYPA-KDQWIITNKANAWCNLMYTASVNLAGFDG-VFSYFGESMIVN 224 (291)
T ss_pred EEEEEEcCCCCcHHHHHHH-HCCCeEEEECCcCCCCc-chHHHHHHHHHHHhcCcEEEEecccccCC-CceeeeeeEEEC
Confidence 9999999999999999999 89999999999887543 46788899999999999999999999764 468899999999
Q ss_pred CCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcc
Q 019580 289 PWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIA 325 (339)
Q Consensus 289 p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~ 325 (339)
|+|+++++++.. ++++++++||++.++..|..+++.
T Consensus 225 P~G~ila~~~~~-~e~i~~adid~~~~~~~R~~~~~~ 260 (291)
T cd07565 225 FDGRTLGEGGRE-PDEIVTAELSPSLVRDARKNWGSE 260 (291)
T ss_pred CCCCEEEeCCCC-CCcEEEEEEcHHHHHHHHhcCCCC
Confidence 999999998875 689999999999999999999883
No 21
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-46 Score=344.05 Aligned_cols=258 Identities=27% Similarity=0.419 Sum_probs=222.3
Q ss_pred EEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcch-hhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 63 RVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDS-LKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 63 rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~-~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
|||++|+++. +|++.|++++.+++++|.++|+|||||||++ ++||...+. .+.+....++.++.|++.++ ++.|+
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~a~--~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELS-LTGYNLGDLVYEVAMHADDPRLQALAEASG--GICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchh-ccCCCchhhhhhhhcccchHHHHHHHHHcC--CCEEE
Confidence 6999999974 8999999999999999999999999999997 578876542 33333344566666666663 89999
Q ss_pred EeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcch
Q 019580 141 LGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFP 220 (339)
Q Consensus 141 ~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~p 220 (339)
+|+. ++. +++++||++++| ++|+++++|+|+|| |....+.|..+|++|+.+.+|+++++|||++||||.+||
T Consensus 78 ~G~~-~~~-~~~~~yNt~~vi-~~G~i~~~y~K~~l-----p~~~~~~e~~~~~~G~~~~vf~~~~~~ig~~IC~D~~fp 149 (269)
T cd07586 78 FGFV-EEG-RDGRFYNSAAYL-EDGRVVHVHRKVYL-----PTYGLFEEGRYFAPGSHLRAFDTRFGRAGVLICEDAWHP 149 (269)
T ss_pred EeCe-EEc-CCCcEEEEEEEe-cCCEEEEEEEeEeC-----CCCCccceeeeecCCCcceEEEeCCeEEEEEEEeccCCc
Confidence 9965 442 357899999999 79999999999998 655556788899999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCC------cHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCee
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVT------GQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVI 294 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~------~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii 294 (339)
++.+.++ ++|+|+|++|++++... ...+|..+.+.||+||++||++||++|.+++ ..++|+|+|++|+|+++
T Consensus 150 ~~~~~~~-~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~-~~~~G~S~ii~p~G~il 227 (269)
T cd07586 150 SLPYLLA-LDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVEDG-VYFWGGSRVVDPDGEVV 227 (269)
T ss_pred HHHHHHH-HCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcCC-ceEeCCcEEECCCCCEE
Confidence 9999998 89999999999876532 1357888999999999999999999998654 57889999999999999
Q ss_pred eecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccc
Q 019580 295 GRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW 334 (339)
Q Consensus 295 ~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~ 334 (339)
++.+.+ ++++++++||++.++..|...++++++++++|+
T Consensus 228 ~~~~~~-~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 228 AEAPLF-EEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred EecCCc-cccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 998876 688999999999999999999999999999996
No 22
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.9e-46 Score=337.70 Aligned_cols=250 Identities=40% Similarity=0.642 Sum_probs=220.6
Q ss_pred EEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc--hhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 64 VAVAQMTSINDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD--SLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 64 VA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~--~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
||++|+++.+|+++|++++.+++++|+++|+|||||||++ ++|+...+ +...+..+.+++++.++++|+++++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYT-MARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVA 79 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchh-cCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEE
Confidence 6899999889999999999999999999999999999997 57876654 23455666778999999999999999999
Q ss_pred eeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc--eEEEecCCcceEEEeeccCcc
Q 019580 142 GGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD--IVAVDSPVGRLGPTVCYDLRF 219 (339)
Q Consensus 142 Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~--~~vf~~~~~kigv~IC~D~~~ 219 (339)
|.. ++. .++++||++++|+++|++++.|+|+||+.. ..+.|..+|.+|+. +.+++++++|+|++||||.+|
T Consensus 80 G~~-~~~-~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~ 152 (255)
T cd07581 80 GMF-EPA-GDGRVYNTLVVVGPDGEIIAVYRKIHLYDA-----FGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRF 152 (255)
T ss_pred Eee-eeC-CCCcEEEeEEEECCCCcEEEEEeeeccCCC-----CCcCcccccCCCCCCCceEEecCCceEEEEEEecccC
Confidence 954 542 345899999999999999999999999531 12468889999998 888999999999999999999
Q ss_pred hHHHHHHHhcCCceEEEEeCCCCCCC-cHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecC
Q 019580 220 PELYQQLRFQHEAQVLLVPSAFTKVT-GQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLP 298 (339)
Q Consensus 220 pe~~r~~~~~~gadlll~ps~~~~~~-~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~ 298 (339)
|++++.++ ++|+|+|++|++|.... ..++|..+++.||+||++|++++|.+|. .+.|.|+|++|+|+++++.+
T Consensus 153 pe~~~~~~-~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-----~~~G~S~i~~p~G~i~~~~~ 226 (255)
T cd07581 153 PELARALA-LAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-----RGIGRSMVVDPLGVVLADLG 226 (255)
T ss_pred HHHHHHHH-HCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC-----CcccceEEECCCcceeeecC
Confidence 99999999 89999999999886443 3578888999999999999999999996 67899999999999999988
Q ss_pred CCCCceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580 299 DRLSTGIAVADIDFSLIDSVRAKMPIAKHRK 329 (339)
Q Consensus 299 ~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~ 329 (339)
.+ +++++++||++.++..|.+.+++.|||
T Consensus 227 ~~--~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 227 ER--EGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred CC--CcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 64 899999999999999999999999886
No 23
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.2e-46 Score=342.74 Aligned_cols=258 Identities=27% Similarity=0.397 Sum_probs=218.5
Q ss_pred cEEEEEEecCc--CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCC---CCCcch------hhhhccCCchHHHHHHH
Q 019580 62 VRVAVAQMTSI--NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVG---DKDGDS------LKVAETLDGPIMQGYCS 130 (339)
Q Consensus 62 ~rVA~vQ~~~~--~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g---~~~~~~------~~~a~~~~~~~~~~l~~ 130 (339)
||||++|+++. +|+++|++++++++++|+++|+|||||||+++ +| +...+. ........++.++.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFT-MELLSLLPEAIDGLDEAIRALAALTPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhH-HHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999974 79999999999999999999999999999974 44 222221 11222344678999999
Q ss_pred HHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceE
Q 019580 131 LARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLG 210 (339)
Q Consensus 131 ~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kig 210 (339)
+|++++++|++|+..++ +++++||++++++|+|.+ ..|+|+||++ .+ .+..++.+|+++.+|+++++|||
T Consensus 80 ~a~~~~i~iv~G~~~~~--~~~~~yNs~~~i~~~G~v-~~y~K~~l~~----~e---~~~~~~~~G~~~~v~~~~~~~ig 149 (280)
T cd07574 80 LARKYGINIIAGSMPVR--EDGRLYNRAYLFGPDGTI-GHQDKLHMTP----FE---REEWGISGGDKLKVFDTDLGKIG 149 (280)
T ss_pred HHHHhCCEEEecceEEc--CCCCeEEEEEEECCCCCE-EEEeeeccCc----hh---hhcccccCCCCceEEecCCccEE
Confidence 99999999999976654 567899999999999987 9999999953 21 23446789999999999999999
Q ss_pred EEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC---CCCCcceeeEEE
Q 019580 211 PTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN---DKRESYGDSLII 287 (339)
Q Consensus 211 v~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~---~~~~~~G~S~Ii 287 (339)
++||||++||+++|.++ ++|+|+|++|++++...+..+|...+++||+||++|++++|++|.+. ....++|+|+|+
T Consensus 150 ~~IC~D~~fpe~~r~l~-~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~ 228 (280)
T cd07574 150 ILICYDSEFPELARALA-EAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVY 228 (280)
T ss_pred EEEecccccHHHHHHHH-HcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccceee
Confidence 99999999999999999 89999999999887655566777778999999999999999999865 246789999999
Q ss_pred CCC------CCeeeecCCCCCceEEEEEeehhHHHHHHhcCC--cccCCCCcc
Q 019580 288 DPW------GTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMP--IAKHRKSID 332 (339)
Q Consensus 288 ~p~------G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~--~~~~~~~~~ 332 (339)
+|+ |.++++++.+ ++++++++||++.++..|..+| .++++|+|+
T Consensus 229 ~P~~~~~~~g~~l~~~~~~-~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 229 TPCDFGFPEDGILAEGEPN-TEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred cCCCCCCCCCCeEeecCCC-CCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 996 8899998765 6899999999999999999966 688888875
No 24
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=2.4e-45 Score=332.80 Aligned_cols=249 Identities=29% Similarity=0.453 Sum_probs=218.8
Q ss_pred cEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 62 VRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 62 ~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
||||++|+++. +|++.|++++.+++++|.+ |+|||||||++ ++||...+ .+.++.++++.++.++++|+++++.|+
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~-l~g~~~~~-~~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMF-TTGFSMNA-EALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcC-cCCCCccH-HHhhcccCChHHHHHHHHHHHCCeEEE
Confidence 79999999975 9999999999999999997 99999999997 57886543 345666677899999999999999887
Q ss_pred EeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcch
Q 019580 141 LGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRFP 220 (339)
Q Consensus 141 ~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~p 220 (339)
.| +.++ +++++||++++++++|++ ..|+|+||++. ..|..+|++|++..+|+++++|+|++||||.+||
T Consensus 78 ~~-~~~~--~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~-------~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~~p 146 (252)
T cd07575 78 GS-LIIK--EGGKYYNRLYFVTPDGEV-YHYDKRHLFRM-------AGEHKVYTAGNERVIVEYKGWKILLQVCYDLRFP 146 (252)
T ss_pred EE-EEEc--cCCceEEEEEEECCCCCE-EEEeeeecCCC-------CCccceecCCCCceEEEECCEEEEEEEEeccCCh
Confidence 54 6665 467899999999999986 59999999531 2477889999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCCC
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPDR 300 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~ 300 (339)
|+++.++ . +|+|++|++|+... ..+|..+++.||+||++||+.||.+|.++.+..+.|+|+|++|+|+++++++.+
T Consensus 147 e~~r~~~-~--a~lil~~s~~~~~~-~~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~~l~~~~~~ 222 (252)
T cd07575 147 VWSRNTN-D--YDLLLYVANWPAPR-RAAWDTLLKARAIENQAYVIGVNRVGTDGNGLEYSGDSAVIDPLGEPLAEAEED 222 (252)
T ss_pred HHHHhhc-C--CCEEEEeCCCCCCc-hHHHHHHhHHHHhhccceEEEecccccCCCCceEcceeEEECCCCceeeEcCCC
Confidence 9999876 3 99999999886543 567888889999999999999999998876678999999999999999998875
Q ss_pred CCceEEEEEeehhHHHHHHhcCCcccCCCC
Q 019580 301 LSTGIAVADIDFSLIDSVRAKMPIAKHRKS 330 (339)
Q Consensus 301 ~~~~vl~~~id~~~~~~~r~~~~~~~~~~~ 330 (339)
+++++++||++.++..|..++++++++.
T Consensus 223 --e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 223 --EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred --ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 8999999999999999999999998864
No 25
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.4e-45 Score=335.42 Aligned_cols=251 Identities=26% Similarity=0.377 Sum_probs=214.3
Q ss_pred cEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcch---hhhhccCCchHHHHHHHHHHhcCc
Q 019580 62 VRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDS---LKVAETLDGPIMQGYCSLARESRV 137 (339)
Q Consensus 62 ~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~---~~~a~~~~~~~~~~l~~~A~~~~i 137 (339)
+|||++|+++ .+|++.|++++.+++++|.++|+|||||||++ ++||...+. ..+.+..+++.++.++++|+++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~-l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMA-TTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDC 79 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEccccc-ccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCc
Confidence 5899999997 48999999999999999999999999999997 578865432 234445566788999999999999
Q ss_pred EEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecCCcceEEEeecc
Q 019580 138 WLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGPTVCYD 216 (339)
Q Consensus 138 ~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv~IC~D 216 (339)
+|++|. .++...++++||++++|+|+| ++..|+|+||+. .|..||++|+ .+.+|+++++|+|++||||
T Consensus 80 ~ii~G~-~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~---------~e~~~~~~g~~~~~v~~~~~~rig~~IC~D 148 (258)
T cd07578 80 YIVVGL-PEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI---------SEPKWAADGDLGHQVFDTEIGRIALLICMD 148 (258)
T ss_pred EEEEec-ceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc---------ccccccCCCCCCceEEECCCccEEEEEeeC
Confidence 999995 454322468999999999999 789999999842 4777899998 6889999999999999999
Q ss_pred CcchHHHHHHHhcCCceEEEEeCCCCCCCcH-HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeee
Q 019580 217 LRFPELYQQLRFQHEAQVLLVPSAFTKVTGQ-AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIG 295 (339)
Q Consensus 217 ~~~pe~~r~~~~~~gadlll~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~ 295 (339)
++||+++|.++ ++|+++|++|++|...... ..| ..||+||++|++++|++|.++ +..+.|+|+|++|+|++++
T Consensus 149 ~~fpe~~r~~~-~~ga~ll~~ps~~~~~~~~~~~~----~~rA~en~~~vv~an~~G~~~-~~~~~G~S~ii~p~G~il~ 222 (258)
T cd07578 149 IHFFETARLLA-LGGADVICHISNWLAERTPAPYW----INRAFENGCYLIESNRWGLER-GVQFSGGSCIIEPDGTIQA 222 (258)
T ss_pred CCchHHHHHHH-HcCCCEEEEcCCCCCCCCcchHH----HHhhhcCCeEEEEecceeccC-CcceeeEEEEECCCCcEee
Confidence 99999999999 8999999999988653322 233 489999999999999999865 4678999999999999999
Q ss_pred ecCCCCCceEEEEEeehhHHHHHHhc-CCcccCCCCcc
Q 019580 296 RLPDRLSTGIAVADIDFSLIDSVRAK-MPIAKHRKSID 332 (339)
Q Consensus 296 ~~~~~~~~~vl~~~id~~~~~~~r~~-~~~~~~~~~~~ 332 (339)
+.+. ++++++++||++.++..|.. .+++++||+++
T Consensus 223 ~~~~--~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 223 SIDS--GDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred ccCC--CCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 8875 47999999999999999975 79999999874
No 26
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-45 Score=336.18 Aligned_cols=248 Identities=29% Similarity=0.454 Sum_probs=214.7
Q ss_pred EEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc---hhhhhccC-CchHHHHHHHHHHhcCc
Q 019580 63 RVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD---SLKVAETL-DGPIMQGYCSLARESRV 137 (339)
Q Consensus 63 rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~---~~~~a~~~-~~~~~~~l~~~A~~~~i 137 (339)
|||++|+++. +|++.|++++.+++++|. +|||||||++ ++||.... ..+.++.. +++.++.++++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~-l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELF-NTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEccccc-ccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 6999999974 899999999999998874 9999999997 57876432 33444444 56789999999999999
Q ss_pred EEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecCCcceEEEeecc
Q 019580 138 WLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGPTVCYD 216 (339)
Q Consensus 138 ~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv~IC~D 216 (339)
+|++| ..++ +++++||++++|+++| ++++|+|+||++ .|..+|++|+ .+.+|+++++|+|++||||
T Consensus 77 ~ii~G-~~~~--~~~~~yNs~~vi~~~G-i~~~y~K~~l~~---------~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D 143 (259)
T cd07577 77 YIVAG-LPER--DGDKFYNSAVVVGPEG-YIGIYRKTHLFY---------EEKLFFEPGDTGFRVFDIGDIRIGVMICFD 143 (259)
T ss_pred EEEec-ceec--cCCceEEEEEEECCCc-cEeeEeeccCCh---------hhhccccCCCCCCceEEeCCcEEEEEEEcC
Confidence 99999 5554 4678999999999999 899999999953 3677899999 7999999999999999999
Q ss_pred CcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC---CCCCcceeeEEECCCCCe
Q 019580 217 LRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN---DKRESYGDSLIIDPWGTV 293 (339)
Q Consensus 217 ~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~---~~~~~~G~S~Ii~p~G~i 293 (339)
.+|||+++.++ ++|||+|++|++|... .|..+++.||+||++|++++|++|.+. ++..+.|.|+|++|+|++
T Consensus 144 ~~fpe~~r~~~-~~Gadli~~ps~~~~~----~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i 218 (259)
T cd07577 144 WYFPEAARTLA-LKGADIIAHPANLVLP----YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEV 218 (259)
T ss_pred cccchHHHHHH-HcCCCEEEECCccCCc----hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCE
Confidence 99999999999 8999999999987532 466678999999999999999999762 345788999999999999
Q ss_pred eeecCCCCCceEEEEEeehhHHHHHH--hcCCcccCCCCccc
Q 019580 294 IGRLPDRLSTGIAVADIDFSLIDSVR--AKMPIAKHRKSIDF 333 (339)
Q Consensus 294 i~~~~~~~~~~vl~~~id~~~~~~~r--~~~~~~~~~~~~~Y 333 (339)
+++++.+ +++++++++|++.++..| ..+|+++++|+++|
T Consensus 219 ~~~~~~~-~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 219 LARAPED-GEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred EeecCCC-CCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 9998875 689999999999988755 66889999999987
No 27
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=6.1e-45 Score=334.05 Aligned_cols=262 Identities=40% Similarity=0.627 Sum_probs=228.1
Q ss_pred ccEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc---hhhhhccCCchHHHHHHHHHHhcC
Q 019580 61 SVRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD---SLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 61 ~~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~---~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
.||||++|+++ ..|.+.|++++.+++++|+++|+|||||||++ ++||...+ +........++.++.++++|++++
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~-~tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 80 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELF-LTGYPCEDDLFLEEAAAEAGEETLEFLAALAEEGG 80 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCccc-ccCCCcccHHHHHhhhhccCChHHHHHHHHHHhCC
Confidence 48999999997 69999999999999999999999999999997 58887763 223333445689999999999777
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCce-EEEecCCcceEEEeec
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDI-VAVDSPVGRLGPTVCY 215 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~-~vf~~~~~kigv~IC~ 215 (339)
+.|+.|+..+. . ..||++++++++|++++.|+|+||++ . .+.|+.++.+|+.. .+|+++++|+|++|||
T Consensus 81 ~~ivg~~~~~~---~-~~~~~~~~i~~~G~ii~~y~K~hl~~-----~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~ 150 (274)
T COG0388 81 VIIVGGPLPER---E-KLYNNAALIDPDGEILGKYRKLHLFD-----A-FYEERRFFTPGDEGVVVFETDGGKIGLLICY 150 (274)
T ss_pred eEEEEeeeecc---c-cceeeEEEEcCCCcEEeEEeeecCCC-----C-ccchhhhccCCCccceeEEeCCceEEEEEEe
Confidence 77776655443 2 78999999999999999999999954 2 35689999999988 5999999999999999
Q ss_pred cCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeee
Q 019580 216 DLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIG 295 (339)
Q Consensus 216 D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~ 295 (339)
|++|||+++.+....|+++|++|++++...+..+|..++++||+||+++|+.+|..|.++....|+|+|.|++|+|++++
T Consensus 151 D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~~~~~~~~~G~S~i~~p~G~v~~ 230 (274)
T COG0388 151 DLRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGFDGAGLEFCGHSAIIDPDGEVLA 230 (274)
T ss_pred eccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCCCCCccEEecceEEECCCccEEe
Confidence 99999988888327899999999999888777899999999999999999999999987666789999999999999999
Q ss_pred ecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccc
Q 019580 296 RLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFW 334 (339)
Q Consensus 296 ~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~ 334 (339)
+...+ +++++++++|++.++..|..++...+++...|.
T Consensus 231 ~~~~~-~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 268 (274)
T COG0388 231 EAGEE-EEGVLLADIDLAELAEVRRKIPVLKDRRRFDLD 268 (274)
T ss_pred ecCCC-CCcEEEEEECHHHHHHHHhhCcchhhcccchhh
Confidence 99975 699999999999999999999988876665553
No 28
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=9.8e-45 Score=340.30 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=219.5
Q ss_pred cCcccEEEEEEecC-----cCCHHHHHHHHHHHHHHHH--HCCCeEEEeCCCCCCCCCC--CcchhhhhccCCchHHHHH
Q 019580 58 GASSVRVAVAQMTS-----INDLAANFATSSRLVKEAA--SAGAKLLCLPENFSYVGDK--DGDSLKVAETLDGPIMQGY 128 (339)
Q Consensus 58 ~~~~~rVA~vQ~~~-----~~d~~~n~~~~~~~i~~A~--~~gadlIVfPE~~~~~g~~--~~~~~~~a~~~~~~~~~~l 128 (339)
....|+||++|.+. ..|+.+|++++.++++.|+ ..|+|||||||++ ++|+. ..++.+.+..++++..+.+
T Consensus 9 ~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~-l~G~~y~~~~~~~~a~~i~g~~~~~l 87 (345)
T PRK13286 9 SNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYS-THGIMYDRQEMYETASTIPGEETAIF 87 (345)
T ss_pred CCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcc-ccCCCcChHHHHHhcccCCCHHHHHH
Confidence 34679999999983 3678999999999999887 4589999999997 57844 3345566777888999999
Q ss_pred HHHHHhcCcEEEEeeeeeecC--CCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCC
Q 019580 129 CSLARESRVWLSLGGFQEKGS--DDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPV 206 (339)
Q Consensus 129 ~~~A~~~~i~iv~Gs~~e~~~--~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~ 206 (339)
+++|+++++++++|...+... .++++|||+++|+|+|+++.+|+|+|+|. +...|.||+...+|+++.
T Consensus 88 ~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~----------~~e~~~pG~~~~v~~~~~ 157 (345)
T PRK13286 88 AEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC----------PIEGWYPGDCTYVSEGPK 157 (345)
T ss_pred HHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc----------hhhceecCCCCEEEeCCC
Confidence 999999999998874434321 24569999999999999999999999853 224567999989999875
Q ss_pred c-ceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeE
Q 019580 207 G-RLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSL 285 (339)
Q Consensus 207 ~-kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ 285 (339)
+ |||++||||.+|||++|.++ ++|||+|++|++|... ...+|..++++||+||++||+++|.+|.+++ ..|+|+|+
T Consensus 158 G~kiG~lIC~D~~fPE~~R~la-~~GAelii~psa~~~~-~~~~~~~~~rarA~eN~~yVv~aN~~G~~~~-~~~~G~S~ 234 (345)
T PRK13286 158 GLKISLIICDDGNYPEIWRDCA-MKGAELIVRCQGYMYP-AKEQQVLVAKAMAWANNCYVAVANAAGFDGV-YSYFGHSA 234 (345)
T ss_pred CcEEEEEEEecccChHHHHHHH-HcCCeEEEEccccCCC-chHHHHHHHHHHHHHCCCEEEEEecccccCC-ceeeeeEE
Confidence 4 99999999999999999999 8999999999988653 3567888899999999999999999997643 57899999
Q ss_pred EECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccC---CCCcccc
Q 019580 286 IIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKH---RKSIDFW 334 (339)
Q Consensus 286 Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~---~~~~~Y~ 334 (339)
|++|+|+++++++.+ ++++++++||++.++.+|..+++.+| .+.+-|.
T Consensus 235 Ivdp~G~vla~~~~~-~e~ii~adld~~~i~~~R~~~~~~n~~~~~~~~~y~ 285 (345)
T PRK13286 235 IIGFDGRTLGECGEE-EMGIQYAQLSVSQIRDARRNDQSQNHLFKLLHRGYT 285 (345)
T ss_pred EECCCCcEEEecCCC-CCeEEEEEEeHHHHHHHHHhCCcccchhhhccceEE
Confidence 999999999998875 67999999999999999999886555 4444443
No 29
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=6.8e-45 Score=335.32 Aligned_cols=237 Identities=22% Similarity=0.271 Sum_probs=198.9
Q ss_pred EEEEEEecC-cCCH-------HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhh--hh---------------
Q 019580 63 RVAVAQMTS-INDL-------AANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLK--VA--------------- 117 (339)
Q Consensus 63 rVA~vQ~~~-~~d~-------~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~--~a--------------- 117 (339)
|+|+||..+ +.+. ++|++++.+++++|.++|+|||||||++ ++||...+... .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~-ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDG-LTGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccc-cCCCCCCccccCchhccccccccccccccc
Confidence 789999996 4444 8999999999999999999999999997 58876543221 10
Q ss_pred --ccCCchHHHHHHHHHHhcCcEEEEeeeeeecC----------CCCceEEEEEEEcCCCceeeeeeecccccccCCCCC
Q 019580 118 --ETLDGPIMQGYCSLARESRVWLSLGGFQEKGS----------DDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGR 185 (339)
Q Consensus 118 --~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~----------~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~ 185 (339)
....++.++.|+++|++++++|++| +.++.. +++++|||+++|+|+|+++++|+|+|||
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G-~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-------- 151 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVAN-LGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-------- 151 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEec-cccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc--------
Confidence 1123578999999999999999998 445421 1236999999999999999999999995
Q ss_pred cccccccccCCC-ceEEEecCCc-ceEEEeeccCcchHHHHHHHhcC-CceEEEEeCCCCCCCcHHHHHHHHHHHHHhcC
Q 019580 186 SYKESSFTEAGK-DIVAVDSPVG-RLGPTVCYDLRFPELYQQLRFQH-EAQVLLVPSAFTKVTGQAHWEILLRARAIETQ 262 (339)
Q Consensus 186 ~~~E~~~~~~G~-~~~vf~~~~~-kigv~IC~D~~~pe~~r~~~~~~-gadlll~ps~~~~~~~~~~~~~~~~~rA~en~ 262 (339)
.|..+|.+|+ .+.+|+++++ |||++||||++|||++|.++ ++ |+|+|++|++|+......+|..++++||+||+
T Consensus 152 --~E~~~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la-~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~ 228 (299)
T cd07567 152 --GEPGFDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELV-KKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANG 228 (299)
T ss_pred --ccccccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHH-HhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcC
Confidence 3667888996 6899999986 99999999999999999999 67 99999999998754445689999999999999
Q ss_pred cEEEEECCccCCCCCCCcceeeEEECCC-CCeeeecCCCCCceEEEEEeehhHHH
Q 019580 263 CYVIAAAQAGKHNDKRESYGDSLIIDPW-GTVIGRLPDRLSTGIAVADIDFSLID 316 (339)
Q Consensus 263 ~~vv~an~~G~~~~~~~~~G~S~Ii~p~-G~ii~~~~~~~~~~vl~~~id~~~~~ 316 (339)
+||+.||.+|.. .++|+|+|++|+ |+++++++...++++++++||++..+
T Consensus 229 ~~vi~~N~~g~~----~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~ 279 (299)
T cd07567 229 VNLLAANYNNPS----AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSR 279 (299)
T ss_pred ceEEEecCCCCc----CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCccc
Confidence 999999999862 467999999999 99999976543588999999998764
No 30
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=4.6e-44 Score=335.21 Aligned_cols=251 Identities=24% Similarity=0.368 Sum_probs=214.0
Q ss_pred cCcccEEEEEEecC-----cCCHHHHHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcc--hhhhhccCCchHHHHH
Q 019580 58 GASSVRVAVAQMTS-----INDLAANFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGD--SLKVAETLDGPIMQGY 128 (339)
Q Consensus 58 ~~~~~rVA~vQ~~~-----~~d~~~n~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~--~~~~a~~~~~~~~~~l 128 (339)
..++||||++|+++ .+++++|++++.+++++|++. |+|||||||++ ++||..+. ..+.+..++++.++.+
T Consensus 10 ~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~-l~G~~~~~~~~~~~a~~~~g~~~~~l 88 (333)
T PRK13287 10 PIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYS-TQGLNTKKWTTEEFLCTVDGPEVDAF 88 (333)
T ss_pred CCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcc-cccCCccccchhhhcccCCCHHHHHH
Confidence 34689999999995 378999999999999999864 89999999997 68887652 2345556778899999
Q ss_pred HHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEecC-C
Q 019580 129 CSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDSP-V 206 (339)
Q Consensus 129 ~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~~-~ 206 (339)
+++|+++++++++| +.++..++.++|||+++|+|+|+++.+|+|+||+. | ...|.+|+ ...+|+++ +
T Consensus 89 ~~~a~~~~i~~~~g-~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~---p-------~~~~~pG~~~~~v~~~~~g 157 (333)
T PRK13287 89 AQACKENKVWGVFS-IMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV---P-------VEPWEPGDLGIPVCDGPGG 157 (333)
T ss_pred HHHHHHcCeEEEEe-eEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC---c-------cccccCCCCCCceEECCCC
Confidence 99999999999987 44553222249999999999999999999999842 3 13467898 68899987 4
Q ss_pred cceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEE
Q 019580 207 GRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLI 286 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~I 286 (339)
.|+|++||||.+|||++|.++ ++|||+|++|++++... ..+|....++||.||+++++.+|++|.+. ...++|+|+|
T Consensus 158 ~kiG~~ICyD~~fPe~~R~~a-~~GAeill~~s~~~~~~-~~~w~~~~~arA~en~~~vv~an~~G~~~-~~~~~G~S~I 234 (333)
T PRK13287 158 SKLAVCICHDGMFPEMAREAA-YKGANVMIRISGYSTQV-REQWILTNRSNAWQNLMYTASVNLAGYDG-VFYYFGEGQV 234 (333)
T ss_pred ceEEEEEEecccchHHHHHHH-HCCCeEEEECCccCCcc-hhHHHHHHHHHHHhCCcEEEEEeccccCC-CeeeeeeeEE
Confidence 599999999999999999999 89999999999887643 56787788999999999999999999864 4678899999
Q ss_pred ECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCc
Q 019580 287 IDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPI 324 (339)
Q Consensus 287 i~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~ 324 (339)
++|+|+++++++.+ ++++++++||++.++..|..+++
T Consensus 235 idp~G~vl~~~~~~-~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 235 CNFDGTTLVQGHRN-PWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred ECCCCcEEEeCCCC-CCeEEEEEEeHHHHHHHHHhcCc
Confidence 99999999999876 68999999999999999999888
No 31
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6e-44 Score=330.60 Aligned_cols=260 Identities=27% Similarity=0.365 Sum_probs=212.3
Q ss_pred EEEEEEecC-----cCCHHHHHHHHHHHHHHHHH-----CCCeEEEeCCCCCCCCCCCcch------hhhhccCCchHHH
Q 019580 63 RVAVAQMTS-----INDLAANFATSSRLVKEAAS-----AGAKLLCLPENFSYVGDKDGDS------LKVAETLDGPIMQ 126 (339)
Q Consensus 63 rVA~vQ~~~-----~~d~~~n~~~~~~~i~~A~~-----~gadlIVfPE~~~~~g~~~~~~------~~~a~~~~~~~~~ 126 (339)
+++.+|+.. .+|++.|++++.+++++|++ +|+|||||||++ ++||...+. .+.++..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~-ltGy~~~~~~~~~~~~~~a~~~~~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYA-LQGFPMGEPREVWQFDKAAIDIPGPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccc-cccCCcccchhhhhhhhccccCCCHHHH
Confidence 567888884 28999999999999999987 479999999997 588865432 3445667889999
Q ss_pred HHHHHHHhcCcEEEEeeeeeecCC-CCceEEEEEEEcCCCceeeeeeeccccc---ccCCCCCcccc-cccccCC-C-ce
Q 019580 127 GYCSLARESRVWLSLGGFQEKGSD-DAHLCNTHVLVDDAGNIRSTYRKMHLFD---VDIPGGRSYKE-SSFTEAG-K-DI 199 (339)
Q Consensus 127 ~l~~~A~~~~i~iv~Gs~~e~~~~-~~~~yNsa~li~p~G~v~~~y~K~~L~~---~~vP~~~~~~E-~~~~~~G-~-~~ 199 (339)
.|+++|++++++|++|.+ ++..+ ++++||++++|+|+|+++++|+|+||+. ++.|.. .+.| ..++.+| . .+
T Consensus 81 ~l~~~A~~~~i~iv~G~~-e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~-~~~~~~~~~g~g~~~~~ 158 (294)
T cd07582 81 ALGEKAKELNVYIAANAY-ERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHD-VWDEYIEVYGYGLDALF 158 (294)
T ss_pred HHHHHHHHcCEEEEEeee-eecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccc-hhhhhcccCCCcccccc
Confidence 999999999999999965 54211 3689999999999999999999999963 223321 1122 1234454 3 46
Q ss_pred EEEecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCC---
Q 019580 200 VAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHND--- 276 (339)
Q Consensus 200 ~vf~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~--- 276 (339)
.+++++++|||++||||.+|||++|.++ ++|+|+|++|++|+......+|..+++.||+||++||+.+|++|.++.
T Consensus 159 ~v~~~~~~~iG~~ICyD~~fpe~~r~la-~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~~~ 237 (294)
T cd07582 159 PVADTEIGNLGCLACEEGLYPEVARGLA-MNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANSGGIYGSPYP 237 (294)
T ss_pred eeecCCCceEEEEEeecccChHHHHHHH-HCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecccccCccccc
Confidence 8999999999999999999999999999 899999999998876544567888899999999999999999987543
Q ss_pred CCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCccc
Q 019580 277 KRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAK 326 (339)
Q Consensus 277 ~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~ 326 (339)
...+.|.|+|++|+|+++++++.+.++++++++||++.++..|..+++-+
T Consensus 238 ~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~~~ 287 (294)
T cd07582 238 ADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGMHN 287 (294)
T ss_pred CceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCccc
Confidence 35788999999999999999876325889999999999999999888544
No 32
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=2.6e-44 Score=327.53 Aligned_cols=256 Identities=22% Similarity=0.257 Sum_probs=210.2
Q ss_pred EEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhcc--CCchHHHHHHHHHHhcCcEE
Q 019580 63 RVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAET--LDGPIMQGYCSLARESRVWL 139 (339)
Q Consensus 63 rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~--~~~~~~~~l~~~A~~~~i~i 139 (339)
|||++|+++ .+|+++|++++.+++++|.++|+|||||||++ ++||...+....... ...+.++.+.+.+++++++|
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~-l~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~i 79 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELS-LTGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAV 79 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchh-ccCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 699999996 58999999999999999999999999999997 588865432211110 01234455555555569999
Q ss_pred EEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcc
Q 019580 140 SLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRF 219 (339)
Q Consensus 140 v~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~ 219 (339)
++|. .+. +++++||+++++ ++|+++..|+|+||. ....+.|..+|.+|+...+|+++++|||++||||.+|
T Consensus 80 i~G~-~~~--~~~~~yNs~~~i-~~G~i~~~y~K~~l~-----~~~~~~e~~~~~~G~~~~~~~~~~~~ig~~IC~D~~f 150 (261)
T cd07570 80 VVGL-PLR--HDGKLYNAAAVL-QNGKILGVVPKQLLP-----NYGVFDEKRYFTPGDKPDVLFFKGLRIGVEICEDLWV 150 (261)
T ss_pred EEec-eEe--cCCCEEEEEEEE-eCCEEEEEEECccCc-----CCccccccccCccCCCCCeEEECCEEEEEEeecccCC
Confidence 9995 454 457899999999 599999999999992 2233468889999999999999999999999999999
Q ss_pred hHH-HHHHHhcCCceEEEEeCCCCCCCc-HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 220 PEL-YQQLRFQHEAQVLLVPSAFTKVTG-QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 220 pe~-~r~~~~~~gadlll~ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
|++ ++.++ ++|+|+|++|++++...+ ..+|..+++.||+||++||+++|++|..+ +..+.|+|+|++|+|++++++
T Consensus 151 pe~~~r~~~-~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~-~~~~~G~S~ii~p~G~vl~~~ 228 (261)
T cd07570 151 PDPPSAELA-LAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGGQD-DLVFDGGSFIADNDGELLAEA 228 (261)
T ss_pred CCchHHHHH-HcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc-eEEEECceEEEcCCCCEEEec
Confidence 999 99999 899999999998875443 35677789999999999999999988753 467899999999999999998
Q ss_pred CCCCCceEEEEEeehhHHHHHHhcCCcccCCCCccc
Q 019580 298 PDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDF 333 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y 333 (339)
+.+ +.+++++|++.++..|...+..++...++|
T Consensus 229 ~~~---~~~~~~id~~~~~~~r~~~~~~~~~~~~~~ 261 (261)
T cd07570 229 PRF---EEDLADVDLDRLRSERRRNSSFLDEEAEIY 261 (261)
T ss_pred Ccc---eEEEEEEEEecCcccccccCCCccchhhcC
Confidence 853 678999999999999998887776655544
No 33
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=6.8e-43 Score=316.14 Aligned_cols=247 Identities=39% Similarity=0.690 Sum_probs=216.6
Q ss_pred EEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhh---hhccCCchHHHHHHHHHHhcCcEE
Q 019580 64 VAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLK---VAETLDGPIMQGYCSLARESRVWL 139 (339)
Q Consensus 64 VA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~---~a~~~~~~~~~~l~~~A~~~~i~i 139 (339)
||++|+++. ++.++|++++.+++++|.++|+|||||||++ ++|+...+... .......+.++.++++|++++++|
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 79 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELF-LTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYI 79 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCcc-ccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEE
Confidence 689999986 9999999999999999999999999999997 57776543222 233445678999999999999999
Q ss_pred EEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCcc
Q 019580 140 SLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLRF 219 (339)
Q Consensus 140 v~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~~ 219 (339)
++|+. ++ +++++||++++++|+|+++..|+|.||+ | +.|..++++|+...+|+++++|+|++||||.++
T Consensus 80 i~G~~-~~--~~~~~~N~~~~i~~~G~i~~~~~K~~l~----~----~~E~~~~~~g~~~~~f~~~~~~ig~~IC~d~~~ 148 (253)
T cd07197 80 VAGIA-EK--DGDKLYNTAVVIDPDGEIIGKYRKIHLF----D----FGERRYFSPGDEFPVFDTPGGKIGLLICYDLRF 148 (253)
T ss_pred EeeeE-Ec--cCCceEEEEEEECCCCeEEEEEEEeecC----C----CcccceecCCCCCceEEcCCceEEEEEEecCCC
Confidence 99965 54 4568999999999999999999999994 3 357788999999999999999999999999999
Q ss_pred hHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCC
Q 019580 220 PELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPD 299 (339)
Q Consensus 220 pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~ 299 (339)
|+.++.+. ++|+|+|++|+++.... ..+|..+++.||+||++|++++|++|..+ +..+.|.|+|++|+|+++++.+.
T Consensus 149 ~~~~~~~~-~~g~dli~~ps~~~~~~-~~~~~~~~~~~A~e~~~~vv~~n~~G~~~-~~~~~G~S~i~~p~G~~~~~~~~ 225 (253)
T cd07197 149 PELARELA-LKGADIILVPAAWPTAR-REHWELLLRARAIENGVYVVAANRVGEEG-GLEFAGGSMIVDPDGEVLAEASE 225 (253)
T ss_pred cHHHHHHH-HCCCcEEEECCcCCCcc-hHHHHHHHHHHHHHhCCeEEEecCCCCCC-CccccceeEEECCCCceeeecCC
Confidence 99999999 89999999999987654 56788889999999999999999999765 57899999999999999999887
Q ss_pred CCCceEEEEEeehhHHHHHHhcCCcccC
Q 019580 300 RLSTGIAVADIDFSLIDSVRAKMPIAKH 327 (339)
Q Consensus 300 ~~~~~vl~~~id~~~~~~~r~~~~~~~~ 327 (339)
+ +++++++||++.++..|..++...+
T Consensus 226 ~--~~~~~~~id~~~~~~~r~~~~~~~~ 251 (253)
T cd07197 226 E--EGILVAELDLDELREARKRWSYLRD 251 (253)
T ss_pred C--CcEEEEEeCHHHHHHHHhhCCcccc
Confidence 6 8999999999999999988754443
No 34
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=5.8e-41 Score=306.87 Aligned_cols=230 Identities=26% Similarity=0.310 Sum_probs=193.1
Q ss_pred cEEEEEEecCc-C------CHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHh
Q 019580 62 VRVAVAQMTSI-N------DLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARE 134 (339)
Q Consensus 62 ~rVA~vQ~~~~-~------d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~ 134 (339)
+|||++|+++. + |.++|++++.+++++|.++|+|||||||++ ++|+.. ..++.++.++++|++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~-l~g~~~---------~~~~~~~~l~~~ak~ 70 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETA-LPFDLQ---------RDPDALARLARAARA 70 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCc-CCcccc---------cCHHHHHHHHHHHHh
Confidence 58999999964 3 789999999999999999999999999996 577652 235688999999999
Q ss_pred cCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeeccccc--ccCCCCCc--------ccccccccCCCceEEEec
Q 019580 135 SRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFD--VDIPGGRS--------YKESSFTEAGKDIVAVDS 204 (339)
Q Consensus 135 ~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~--~~vP~~~~--------~~E~~~~~~G~~~~vf~~ 204 (339)
++++|++|.. ++..+++++||++++++|+|+++.+|+|+||++ ++.|.... ..|..+|.+|++..+|++
T Consensus 71 ~~i~ii~G~~-~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~~~vf~~ 149 (270)
T cd07571 71 VGAPLLTGAP-RREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQPLLL 149 (270)
T ss_pred cCCeEEEeee-eeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCCCCcccc
Confidence 9999999954 442222589999999999999999999999942 22222111 136778999999999999
Q ss_pred CC-cceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCC---CCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCc
Q 019580 205 PV-GRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTK---VTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRES 280 (339)
Q Consensus 205 ~~-~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~---~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~ 280 (339)
++ +|+|++||||.+|||.++.++ ++|+|+|++|+++.+ .....+|..+++.||+||+++|++||+.|.
T Consensus 150 ~~~~r~g~~IC~D~~fpe~~r~~~-~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~------- 221 (270)
T cd07571 150 GGGVRVGPLICYESIFPELVRDAV-RQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANTGI------- 221 (270)
T ss_pred CCCceEEEEEEeeeeChHHHHhhc-ccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhCCCEEEEcCCee-------
Confidence 99 999999999999999999999 899999999986432 223456677889999999999999998765
Q ss_pred ceeeEEECCCCCeeeecCCCCCceEEEEEeehhH
Q 019580 281 YGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSL 314 (339)
Q Consensus 281 ~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~ 314 (339)
|+|+||+|+++++++.+ ++++++++||++.
T Consensus 222 ---S~ivdp~G~ii~~~~~~-~e~~~~~~i~~~~ 251 (270)
T cd07571 222 ---SAVIDPDGRIVARLPLF-EAGVLVAEVPLRT 251 (270)
T ss_pred ---eEEECCCCcEEeecCCC-cceEEEEEeccCC
Confidence 99999999999999876 7899999999875
No 35
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=3.7e-40 Score=334.69 Aligned_cols=258 Identities=22% Similarity=0.234 Sum_probs=215.1
Q ss_pred cccEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccC--CchHHHHHHHHHHhcC
Q 019580 60 SSVRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETL--DGPIMQGYCSLARESR 136 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~--~~~~~~~l~~~A~~~~ 136 (339)
+.||||++|+++. +|++.|++++.+++++|.++|+|||||||++ ++||...+........ ..+.++.|+++|++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~-ltGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~ 89 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELS-LSGYSCDDLFLQDTLLDAVEDALATLVEASADLD 89 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEccccc-ccCCCcchhhccHHHHHhhHHHHHHHHHHHhhcC
Confidence 5799999999974 9999999999999999999999999999997 6899876643211111 1367888999999999
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCce-----------------
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDI----------------- 199 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~----------------- 199 (339)
+.|++| .+++ .++++||++++|+ +|++++.|+|+|| |++..|.|++||++|+.+
T Consensus 90 i~ivvG-~p~~--~~~~lyNsa~vi~-~G~il~~y~K~hL-----p~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~ 160 (679)
T PRK02628 90 PLLVVG-APLR--VRHRLYNCAVVIH-RGRILGVVPKSYL-----PNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTD 160 (679)
T ss_pred EEEEEe-eEEE--ECCEEEEEEEEEc-CCEEEEEeccccC-----CCCCcccccccccCCCCCCCceEeecCeeeccCCc
Confidence 999999 5554 3568999999998 8999999999999 666667899999999863
Q ss_pred EEEec---CCcceEEEeeccCcchHHH-HHHHhcCCceEEEEeCCCCCCCcHHHHH-HHHHHHHHhcCcEEEEECC-ccC
Q 019580 200 VAVDS---PVGRLGPTVCYDLRFPELY-QQLRFQHEAQVLLVPSAFTKVTGQAHWE-ILLRARAIETQCYVIAAAQ-AGK 273 (339)
Q Consensus 200 ~vf~~---~~~kigv~IC~D~~~pe~~-r~~~~~~gadlll~ps~~~~~~~~~~~~-~~~~~rA~en~~~vv~an~-~G~ 273 (339)
.+|++ +++|||+.||||+|||+.. +.++ ++|||+|++|++|+...+..+|+ .+.+.+|.+++.+++++|+ .|.
T Consensus 161 ~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la-~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v~~n~~~G~ 239 (679)
T PRK02628 161 LLFEAEDLPGFVFGVEICEDLWVPIPPSSYAA-LAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYVYAAAGVGE 239 (679)
T ss_pred eeEEecccCCcEEEEEEeccccccCchhhHHh-cCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEEEEeccccc
Confidence 34655 6899999999999999984 7888 89999999999998776654554 6678889998777777776 554
Q ss_pred CCCCCCcceeeEEECCCCCeeeecCCC-CCceEEEEEeehhHHHHHHhcCCcccCCC
Q 019580 274 HNDKRESYGDSLIIDPWGTVIGRLPDR-LSTGIAVADIDFSLIDSVRAKMPIAKHRK 329 (339)
Q Consensus 274 ~~~~~~~~G~S~Ii~p~G~ii~~~~~~-~~~~vl~~~id~~~~~~~r~~~~~~~~~~ 329 (339)
..++..|.|+|+|++ +|+++++++.+ .++++++++||++.++..|.+.+++++++
T Consensus 240 ~~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 240 STTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred CCCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 455678999999998 99999998754 13569999999999999999989888887
No 36
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=2.8e-40 Score=329.44 Aligned_cols=239 Identities=31% Similarity=0.394 Sum_probs=205.1
Q ss_pred cEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHh--cCcE
Q 019580 62 VRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARE--SRVW 138 (339)
Q Consensus 62 ~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~--~~i~ 138 (339)
||||++|+++ .+|++.|++++.+++++|.++|+|||||||++ ++||...++.... .+.....+.+.++|++ +++.
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~-ltGy~~~d~~~~~-~~~~~~~~~l~~La~~~~~~i~ 78 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELF-LSGYPPEDLLLRP-AFLAACEAALERLAAATAGGPA 78 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchh-hcCCChhhhhcCH-HHHHHHHHHHHHHHHhcCCCCE
Confidence 7999999997 59999999999999999999999999999997 6898765532211 1223455667777777 6999
Q ss_pred EEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCc
Q 019580 139 LSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLR 218 (339)
Q Consensus 139 iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~ 218 (339)
|++|. .++ +++++||++++++ +|++++.|+|+|| |.+..|.|..+|++|+...+|+++++|+|++||||.+
T Consensus 79 ii~G~-~~~--~~~~~yNsa~vi~-~G~i~~~y~K~~L-----~~~~~~~E~~~f~~G~~~~~~~~~g~rigv~IC~D~~ 149 (540)
T PRK13981 79 VLVGH-PWR--EGGKLYNAAALLD-GGEVLATYRKQDL-----PNYGVFDEKRYFAPGPEPGVVELKGVRIGVPICEDIW 149 (540)
T ss_pred EEEeC-cEe--eCCcEEEEEEEEE-CCeEEEEEeeeeC-----CCCCCcCccccccCCCCceEEEECCEEEEEEEehhhc
Confidence 99995 444 4578999999998 8999999999998 4444567899999999999999999999999999999
Q ss_pred chHHHHHHHhcCCceEEEEeCCCCCCCc-HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeec
Q 019580 219 FPELYQQLRFQHEAQVLLVPSAFTKVTG-QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRL 297 (339)
Q Consensus 219 ~pe~~r~~~~~~gadlll~ps~~~~~~~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~ 297 (339)
||++++.++ .+|+|+|++|++++...+ ...|..+++.||+||++|++++|++|.++ +..|.|+|+|++|+|+++.++
T Consensus 150 ~pe~~r~la-~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~~~-~~~f~G~S~i~dp~G~il~~~ 227 (540)
T PRK13981 150 NPEPAETLA-EAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGGQD-ELVFDGASFVLNADGELAARL 227 (540)
T ss_pred CCcHHHHHH-HCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccCCC-ceEEeCceEEECCCCCEeeec
Confidence 999999999 899999999998876544 35667789999999999999999999754 468999999999999999999
Q ss_pred CCCCCceEEEEEeehhH
Q 019580 298 PDRLSTGIAVADIDFSL 314 (339)
Q Consensus 298 ~~~~~~~vl~~~id~~~ 314 (339)
+.+ +++++++++|++.
T Consensus 228 ~~~-~e~~l~~did~~~ 243 (540)
T PRK13981 228 PAF-EEQIAVVDFDRGE 243 (540)
T ss_pred CCC-CCcEEEEEEeecC
Confidence 987 7899999999953
No 37
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=301.27 Aligned_cols=272 Identities=27% Similarity=0.416 Sum_probs=247.3
Q ss_pred cccEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCC-cchhhhhccCC-----chHHHHHHHHH
Q 019580 60 SSVRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKD-GDSLKVAETLD-----GPIMQGYCSLA 132 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~-~~~~~~a~~~~-----~~~~~~l~~~A 132 (339)
.++++|++|.... .+..+|++.++..+++|.++|++||||||.+ ..||.. +.+..+++.++ ++..+.++++|
T Consensus 12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~-~~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~va 90 (298)
T KOG0806|consen 12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDG-LYGYNFTESFYPYLEDIPDPGCRDPSRQGLSEVA 90 (298)
T ss_pred cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhc-cccccccccccchhhhCCCcccCChhHHHhHHHH
Confidence 4689999999985 6999999999999999999999999999997 577776 55555555554 58999999999
Q ss_pred HhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEE
Q 019580 133 RESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPT 212 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~ 212 (339)
++++|+++.|++.+.. .+++.||++.+++++|+.+..|+|.|||+.+.|+.-.|.|...|.+|..+.+++.+.||||+.
T Consensus 91 ~~~~~~~i~g~i~~~~-~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gkfGi~ 169 (298)
T KOG0806|consen 91 ERLSCYIIGGSIEEEA-LGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGKFGIF 169 (298)
T ss_pred hhceEEEecCcchhhc-ccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCceEEE
Confidence 9999999999888764 478999999999999999999999999999999988899999999999999999999999999
Q ss_pred eeccCcchHHHHHHHhcCCceEEEEeCCCC---CCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcce-eeEEEC
Q 019580 213 VCYDLRFPELYQQLRFQHEAQVLLVPSAFT---KVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYG-DSLIID 288 (339)
Q Consensus 213 IC~D~~~pe~~r~~~~~~gadlll~ps~~~---~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G-~S~Ii~ 288 (339)
||||++|+|+++.++ +.|+++|+.|++|. ......+|..++++||..|..+|..++..+...+.+...| .|.+++
T Consensus 170 IC~Di~F~d~A~~~~-~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s~~y~~~gshs~~~~ 248 (298)
T KOG0806|consen 170 ICFDIRFYDPAMILV-KDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTGSGIYAPRGSHSIMVN 248 (298)
T ss_pred EEecccccchHHHHH-HcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCCceeeecCCcceeecC
Confidence 999999999999999 78999999999998 4556789999999999999999999999988777788888 999999
Q ss_pred CCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580 289 PWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS 336 (339)
Q Consensus 289 p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~ 336 (339)
|.|++++..... +.++++++|++...+.|+.+++++++++|+|...
T Consensus 249 p~gkvl~a~~~~--~e~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~ 294 (298)
T KOG0806|consen 249 PTGKVLAAAVEK--EEIIYADVDPSAIASRRQGLPVFRQRRLDLYSLD 294 (298)
T ss_pred CcceEeeeccCC--CccccccCCHHHHHHHhcccchhhccchhhhhhh
Confidence 999999988865 5599999999999999999999999999999754
No 38
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=2.5e-38 Score=320.66 Aligned_cols=256 Identities=17% Similarity=0.133 Sum_probs=199.2
Q ss_pred cccEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCC--chHHHHHHHHHHhcC
Q 019580 60 SSVRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLD--GPIMQGYCSLARESR 136 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~--~~~~~~l~~~A~~~~ 136 (339)
+.||||++|++++ +|++.|++++.+++++|+++|||||||||++ ++||...+.+....... .+.+..|.+.+++++
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~-lTGY~~~Dl~~~~~~~~~~~~~L~~La~~a~~~~ 80 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELE-ITGYGCEDHFLELDTVTHSWECLAEILVGDLTDG 80 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCc-cCCCChHHHhhChhHHHHHHHHHHHHHhhcccCC
Confidence 4699999999975 8999999999999999999999999999998 68998765433222211 233444444445679
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCc------------------
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKD------------------ 198 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~------------------ 198 (339)
+.|++|. ++. .++++||+++++. +|++++.|+|+|| |++..|.|.+||+||+.
T Consensus 81 i~vvvG~-p~~--~~~~lYN~a~vi~-~GkIlg~y~K~hL-----pny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g 151 (700)
T PLN02339 81 ILCDIGM-PVI--HGGVRYNCRVFCL-NRKILLIRPKMWL-----ANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATS 151 (700)
T ss_pred eEEEEee-eEE--ECCeEEEEEEEEe-CCEEEEEEecccC-----CCCCccccccccccCccCCcceeeccccchhhccC
Confidence 9999994 444 3457999999996 8999999999999 66667889999999862
Q ss_pred -------eEEEecCCcceEEEeeccCcchHHHHH-HHhcCCceEEEEeCCCCCCCcH--HHHHHHHHHHHHhcCcEEEEE
Q 019580 199 -------IVAVDSPVGRLGPTVCYDLRFPELYQQ-LRFQHEAQVLLVPSAFTKVTGQ--AHWEILLRARAIETQCYVIAA 268 (339)
Q Consensus 199 -------~~vf~~~~~kigv~IC~D~~~pe~~r~-~~~~~gadlll~ps~~~~~~~~--~~~~~~~~~rA~en~~~vv~a 268 (339)
..+|++++.+||+.||||+|||+..+. ++ .+|||+|++|+++++..++ ..++.+....+..++.| ++|
T Consensus 152 ~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lA-l~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~~y-vya 229 (700)
T PLN02339 152 QKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLA-LNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGGVY-LYA 229 (700)
T ss_pred CceeccCcceeecCCeEEEEEEecccCCChHHHHHHH-HcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCCcE-EEE
Confidence 124456678999999999999999995 88 8999999999887654432 22333334445555666 689
Q ss_pred CCccCCCCCCCcceeeEEECCCCCeeeecCCCC--CceEEEEEeehhHHHHHHhcCCcccCC
Q 019580 269 AQAGKHNDKRESYGDSLIIDPWGTVIGRLPDRL--STGIAVADIDFSLIDSVRAKMPIAKHR 328 (339)
Q Consensus 269 n~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~~--~~~vl~~~id~~~~~~~r~~~~~~~~~ 328 (339)
|.+|.+.+...|.|+|+|. |+|+++++.+.+. ++.+++++||++.++..|...+++++.
T Consensus 230 N~~Ge~~~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~~ 290 (700)
T PLN02339 230 NQRGCDGGRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFREQ 290 (700)
T ss_pred cCCccCCCceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhhh
Confidence 9998766556777888885 7999999988752 357999999999999999888877654
No 39
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=1.1e-36 Score=280.99 Aligned_cols=219 Identities=22% Similarity=0.278 Sum_probs=167.4
Q ss_pred EEEEEEecCc-CCHHHHHHHHHHHHHHHHH----CCCeEEEeCCCCCCCCCCCcch---hhhhc-cCCchHHHHHHHHHH
Q 019580 63 RVAVAQMTSI-NDLAANFATSSRLVKEAAS----AGAKLLCLPENFSYVGDKDGDS---LKVAE-TLDGPIMQGYCSLAR 133 (339)
Q Consensus 63 rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~----~gadlIVfPE~~~~~g~~~~~~---~~~a~-~~~~~~~~~l~~~A~ 133 (339)
|||++|+++. +|+++|++++.+++++|.+ +|+|||||||++ ++||...+. ...++ ...++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~-ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELA-LTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCC-cccCCcccHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6999999975 8999999999999999988 899999999997 578865432 22333 235788899999999
Q ss_pred hcCcEEEEeeeeeecCCC--CceEEEEEEEcCCCceeeeeeecccccccCCCCCccccc-cccc------CCCceEE--E
Q 019580 134 ESRVWLSLGGFQEKGSDD--AHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKES-SFTE------AGKDIVA--V 202 (339)
Q Consensus 134 ~~~i~iv~Gs~~e~~~~~--~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~-~~~~------~G~~~~v--f 202 (339)
+++++|++|. .++. ++ +++|||+++|+|+|+++++|+|+|||+.+.+.. +.|. .++. +|+.... +
T Consensus 80 ~~~i~Iv~G~-~e~~-~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~--~~e~~~~~~~~~~~~~G~~~~~~~~ 155 (295)
T cd07566 80 KFNCHVVIGY-PEKV-DESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWG--CEENPGGFQTFPLPFAKDDDFDGGS 155 (295)
T ss_pred hcCCEEEEee-eEec-CCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccc--cCCCCCccccccccccccccccccc
Confidence 9999999994 4543 23 489999999999999999999999975422110 1122 1222 7776542 3
Q ss_pred ecCCcceEEEeeccCc---c--h----HHHHHHHhcCCceEEEEeCCCCCCCcH--------HHH---HHHHHHHH----
Q 019580 203 DSPVGRLGPTVCYDLR---F--P----ELYQQLRFQHEAQVLLVPSAFTKVTGQ--------AHW---EILLRARA---- 258 (339)
Q Consensus 203 ~~~~~kigv~IC~D~~---~--p----e~~r~~~~~~gadlll~ps~~~~~~~~--------~~~---~~~~~~rA---- 258 (339)
...++|||++||||++ | | |++|.++ ++|||+|++|++|+..... .+| ..+.+.||
T Consensus 156 ~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la-~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~~ 234 (295)
T cd07566 156 VDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVL-DNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPLR 234 (295)
T ss_pred cCCcceeEEEEEecCCcccccCCcchHHHHHHHH-HCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhcccc
Confidence 3458899999999996 7 5 9999999 8999999999999754321 122 22344444
Q ss_pred --HhcCcEEEEECCccCCCCCCCcceeeEEEC
Q 019580 259 --IETQCYVIAAAQAGKHNDKRESYGDSLIID 288 (339)
Q Consensus 259 --~en~~~vv~an~~G~~~~~~~~~G~S~Ii~ 288 (339)
.||++||+.||.+|.+. +..|+|+|+|+.
T Consensus 235 a~~eN~~~vv~~Nr~G~~~-~~~f~G~S~i~~ 265 (295)
T cd07566 235 AEPLEGTQVVFCNRIGTEN-DTLYAGSSAVIG 265 (295)
T ss_pred cCCCCceEEEEEeccCccC-CceecCccceee
Confidence 59999999999999864 468889999885
No 40
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=1.6e-36 Score=300.41 Aligned_cols=231 Identities=23% Similarity=0.272 Sum_probs=186.8
Q ss_pred cccEEEEEEecCc-------CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHH
Q 019580 60 SSVRVAVAQMTSI-------NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLA 132 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-------~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A 132 (339)
+++|||++|+++. ++.++|++++.++++++ ++++|+|||||++ ++++..+ ..++..+.++++|
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a-~p~~~~~--------~~~~~~~~l~~~a 287 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETA-IPFLLED--------LPQAFLKALDDLA 287 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCcc-ccccccc--------ccHHHHHHHHHHH
Confidence 4699999999964 35678999999998844 5789999999986 4544211 1234667899999
Q ss_pred HhcCcEEEEeeeeeecCCCC-ceEEEEEEEcCCCceeeeeeeccc--ccccCCCCCcc--------cccccccCCC-ceE
Q 019580 133 RESRVWLSLGGFQEKGSDDA-HLCNTHVLVDDAGNIRSTYRKMHL--FDVDIPGGRSY--------KESSFTEAGK-DIV 200 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~~-~~yNsa~li~p~G~v~~~y~K~~L--~~~~vP~~~~~--------~E~~~~~~G~-~~~ 200 (339)
+++++.+++|...+....++ ++||++++++| |+++.+|+|+|| |+|++|....+ .+...+++|+ ...
T Consensus 288 ~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~~~~~ 366 (505)
T PRK00302 288 REKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGPYVQP 366 (505)
T ss_pred HhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCCCCCC
Confidence 99999999996543211123 69999999998 779999999999 56666654211 1223688998 888
Q ss_pred EEecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCC---CCCcHHHHHHHHHHHHHhcCcEEEEECCccCCCCC
Q 019580 201 AVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFT---KVTGQAHWEILLRARAIETQCYVIAAAQAGKHNDK 277 (339)
Q Consensus 201 vf~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~---~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~ 277 (339)
+++++++|+|++||||..|||..|.++ ++|+|++++++++. ...+..+|..+++.||+||+++++++|++|.
T Consensus 367 v~~~~~~~ig~~ICyE~~fpe~~r~~~-~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RAiEng~~vvra~n~G~---- 441 (505)
T PRK00302 367 PLLAKGLKLAPLICYEIIFPEEVRANV-RQGADLLLNISNDAWFGDSIGPYQHFQMARMRALELGRPLIRATNTGI---- 441 (505)
T ss_pred CcccCCceEEEEEeehhcChHHHHhhc-cCCCCEEEEccchhhcCCCCchHHHHHHHHHHHHHhCCceEEecCcee----
Confidence 999999999999999999999999999 89999999998743 2233457778899999999999999999887
Q ss_pred CCcceeeEEECCCCCeeeecCCCCCceEEEEEeehh
Q 019580 278 RESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFS 313 (339)
Q Consensus 278 ~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~ 313 (339)
|+|+||+|+++++.+.+ +++++++++++.
T Consensus 442 ------Saiidp~G~i~~~~~~~-~~~~l~~~i~~~ 470 (505)
T PRK00302 442 ------TAVIDPLGRIIAQLPQF-TEGVLDGTVPPT 470 (505)
T ss_pred ------eEEECCCCCEeeecCCC-ceeEEEEEeccC
Confidence 99999999999999976 789999999984
No 41
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=1.6e-35 Score=284.69 Aligned_cols=213 Identities=25% Similarity=0.337 Sum_probs=173.8
Q ss_pred cccEEEEEEecCcC-------CHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHH
Q 019580 60 SSVRVAVAQMTSIN-------DLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLA 132 (339)
Q Consensus 60 ~~~rVA~vQ~~~~~-------d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A 132 (339)
+++|||++|+++.. +.++|++++.+++++|.+ ++|+|||||++ ++++.... +.+..+.++++|
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a-~~~~~~~~--------~~~~~~~l~~~a 227 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETA-FPFDLENS--------PQKLADRLKLLV 227 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccc-cccchhhC--------cHHHHHHHHHHH
Confidence 46999999999753 457899999999998877 89999999996 45553221 123678899999
Q ss_pred HhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeeccc--ccccCCCCCccc------c---cccccCCCceEE
Q 019580 133 RESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHL--FDVDIPGGRSYK------E---SSFTEAGKDIVA 201 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L--~~~~vP~~~~~~------E---~~~~~~G~~~~v 201 (339)
+++++.+++|...+..++.+++|||+++++|+|+++.+|+|+|| |+|++|....++ + ...|++|+++.+
T Consensus 228 ~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 307 (391)
T TIGR00546 228 LSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGPGPQV 307 (391)
T ss_pred HhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCCCCCC
Confidence 99999999996543211112799999999999999999999999 566777432210 1 246889999999
Q ss_pred EecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCC---CcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCC
Q 019580 202 VDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKV---TGQAHWEILLRARAIETQCYVIAAAQAGKHNDKR 278 (339)
Q Consensus 202 f~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~---~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~ 278 (339)
++++++|+|++||||..|||+.|.++ ++|+|++++|+++.+. ....+|..+++.||+||+++++++|++|.
T Consensus 308 ~~~~~~~~g~~ICyE~~fp~~~r~~~-~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RAiEn~~~vvra~n~G~----- 381 (391)
T TIGR00546 308 LKLPGGKIAPLICYESIFPDLVRASA-RQGAELLVNLTNDAWFGDSSGPWQHFALARFRAIENGRPLVRATNTGI----- 381 (391)
T ss_pred CcCCCceeeeeEEeehhchHHHHhhc-cCCCCEEEEecchhhcCCCCChHHHHHHHHHHHHHhCCcEEEecCCce-----
Confidence 99999999999999999999999998 8999999999875432 23467778899999999999999999987
Q ss_pred CcceeeEEECCCCCe
Q 019580 279 ESYGDSLIIDPWGTV 293 (339)
Q Consensus 279 ~~~G~S~Ii~p~G~i 293 (339)
|+++||+|++
T Consensus 382 -----S~vidp~G~i 391 (391)
T TIGR00546 382 -----SAVIDPRGRT 391 (391)
T ss_pred -----eEEECCCCCC
Confidence 9999999985
No 42
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-33 Score=236.36 Aligned_cols=255 Identities=28% Similarity=0.447 Sum_probs=214.6
Q ss_pred cccEEEEEEecC-cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc-------------------hhhhhcc
Q 019580 60 SSVRVAVAQMTS-INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD-------------------SLKVAET 119 (339)
Q Consensus 60 ~~~rVA~vQ~~~-~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~-------------------~~~~a~~ 119 (339)
...||+++|... ..|....++++++.+.+|+++|++||||||.+ +.||.... ....+-.
T Consensus 16 s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAf-iGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AIe 94 (337)
T KOG0805|consen 16 SIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAF-IGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAIE 94 (337)
T ss_pred cceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHh-ccCCCCcceeeEEEeecchhhhHHHHHHHHHhhc
Confidence 468999999996 58899999999999999999999999999986 56665421 2334445
Q ss_pred CCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCccccccccc--CCC
Q 019580 120 LDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTE--AGK 197 (339)
Q Consensus 120 ~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~--~G~ 197 (339)
++++..++|..+|+++++++++| ..|+ ++-.+|-+++.++|.|..+++|||..... .|+..|. .|.
T Consensus 95 v~gpEv~~l~~la~~~~v~lv~G-~iEr--eg~TLYCt~~f~~p~g~~lGKHRKlmPTa---------lERciWGqGDGS 162 (337)
T KOG0805|consen 95 VPGPEVERLAELAKKNNVYLVMG-AIER--EGYTLYCTVLFFSPQGQFLGKHRKLMPTA---------LERCIWGQGDGS 162 (337)
T ss_pred CCChHHHHHHHHhhcCCeEEEEE-EEec--cccEEEEEEEEECCCccccccccccccch---------hhheeeccCCCc
Confidence 68899999999999999999999 5566 78899999999999999999999998632 3555554 455
Q ss_pred ceEEEecCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC--
Q 019580 198 DIVAVDSPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN-- 275 (339)
Q Consensus 198 ~~~vf~~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-- 275 (339)
+.++|+++.||||-+||||...|-+...+. .+|+++.+.|+... ...|..-|...|.|-+|+|+.++..-...
T Consensus 163 TiPV~dT~iGKIG~AICWEN~MPl~R~alY-~KgieIycAPT~D~----r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~ 237 (337)
T KOG0805|consen 163 TIPVYDTPIGKIGAAICWENRMPLYRTALY-AKGIEIYCAPTADG----RKEWQSSMLHIALEGGCFVLSACQFCKRKDF 237 (337)
T ss_pred ccceeecccchhceeeecccccHHHHHHHH-hcCcEEEeccCCCC----cHHHHHhhhheeecCceEEEEhhhhcccccC
Confidence 789999999999999999999999988888 79999999998753 46798889999999999999998864321
Q ss_pred -----------------CCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCC-CCccc
Q 019580 276 -----------------DKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHR-KSIDF 333 (339)
Q Consensus 276 -----------------~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~-~~~~Y 333 (339)
+.....|+|.||+|.|.+++..... .|+++.+|+|+..+..+|-.+++.+|+ |||.+
T Consensus 238 p~~peyl~~~~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~-~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVF 312 (337)
T KOG0805|consen 238 PDHPDYLFTDWYDDKEPDSVVSQGGSVIISPLGQVLAGPNFE-SEGLITADLDLGDIARAKLDFDVVGHYSRPDVF 312 (337)
T ss_pred CCCchhhcccchhccCCCcceecCCcEEEccccceecCCCcC-ccceEEEeccchhhhhhccccccccccCCCceE
Confidence 2346789999999999999997765 899999999999998888888888775 45544
No 43
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-32 Score=233.59 Aligned_cols=269 Identities=22% Similarity=0.332 Sum_probs=232.5
Q ss_pred cccEEEEEEecCc--------CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCC--c--chhhhhccCC-chHHH
Q 019580 60 SSVRVAVAQMTSI--------NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKD--G--DSLKVAETLD-GPIMQ 126 (339)
Q Consensus 60 ~~~rVA~vQ~~~~--------~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~--~--~~~~~a~~~~-~~~~~ 126 (339)
+-+||+++|-.+. .......+++..+++.|...|+.+|+|.|.|.++.... + .|.++++... ++..+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 5689999999852 22356677888899999999999999999987554322 2 3678888875 89999
Q ss_pred HHHHHHHhcCcEEEEeeeeeecCC-CCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCC-ceEEEec
Q 019580 127 GYCSLARESRVWLSLGGFQEKGSD-DAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGK-DIVAVDS 204 (339)
Q Consensus 127 ~l~~~A~~~~i~iv~Gs~~e~~~~-~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~-~~~vf~~ 204 (339)
.++++|+++++.||.. +.|++.+ ++-+.|++++|+.+|+++++++|.|+ |-...|.|+.|+..|+ +.++|++
T Consensus 152 flqklakkhdmvivsp-ilerd~ehgdvlwntavvisn~g~vigk~rknhi-----prvgdfnestyymeg~lghpvfet 225 (387)
T KOG0808|consen 152 FLQKLAKKHDMVIVSP-ILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI-----PRVGDFNESTYYMEGDLGHPVFET 225 (387)
T ss_pred HHHHHHhhCCeEEEeh-hhhcccccCceeeeeeEEEccCCceecccccccC-----CcccccCcceeEeecCCCCceeee
Confidence 9999999999988765 7776543 45789999999999999999999996 8888899999998887 7899999
Q ss_pred CCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccCCC---------
Q 019580 205 PVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGKHN--------- 275 (339)
Q Consensus 205 ~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~--------- 275 (339)
.+|||++.|||-.+.|.-+-.+. .+|+++|++|++.-...+...|-..++..|+.|.+++...|.+|.+-
T Consensus 226 ~fgriavnicygrhhplnwlmy~-lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpneftsgd 304 (387)
T KOG0808|consen 226 VFGRIAVNICYGRHHPLNWLMYG-LNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGD 304 (387)
T ss_pred ecceEEEEeeccCCCchhhhhhh-ccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCC
Confidence 99999999999999999999999 89999999999987666677888889999999999999999999752
Q ss_pred ------CCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhHHHHHHhcCCcccCCCCcccccc
Q 019580 276 ------DKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSLIDSVRAKMPIAKHRKSIDFWKS 336 (339)
Q Consensus 276 ------~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~~~~~r~~~~~~~~~~~~~Y~~~ 336 (339)
+...|+|.|.+..|++...-.+... .+|++++++|++.+++.+..|.|....|-|.|.+.
T Consensus 305 gkpah~dfghfygssy~aapd~srtp~lsr~-rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~ 370 (387)
T KOG0808|consen 305 GKPAHNDFGHFYGSSYFAAPDASRTPSLSRY-RDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADL 370 (387)
T ss_pred CCcccccccccccceeeecCCCCCCcccccc-ccceEEeecchHHHHHhhhhhcceehhhHHHHHHH
Confidence 2247999999999999988777776 79999999999999999999999999999999753
No 44
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.98 E-value=1.3e-31 Score=231.57 Aligned_cols=169 Identities=38% Similarity=0.641 Sum_probs=142.8
Q ss_pred EEEEEEecC---cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCC--------cchhhhhccCCchHHHHHHHH
Q 019580 63 RVAVAQMTS---INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKD--------GDSLKVAETLDGPIMQGYCSL 131 (339)
Q Consensus 63 rVA~vQ~~~---~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~--------~~~~~~a~~~~~~~~~~l~~~ 131 (339)
|||++|+++ ..|.++|++++.+++++|.++++|||||||++ +++|.. .+....++...++.++.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMA-LPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTT-TTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcch-hcccccccccccccchhhhhccccccHHHHHHHHH
Confidence 799999994 58999999999999999999999999999997 577721 234455555668899999999
Q ss_pred HHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCC-CceEEEecC-----
Q 019580 132 ARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAG-KDIVAVDSP----- 205 (339)
Q Consensus 132 A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G-~~~~vf~~~----- 205 (339)
|+++++++++| ..+. +++++||++++++|+|+++++|+|+|| +|+++..+|..+|.+| ....+|+++
T Consensus 80 a~~~~~~i~~G-~~~~--~~~~~~N~~~~~~~~g~~~~~y~K~~l----vpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~ 152 (186)
T PF00795_consen 80 AKENGITIVAG-IPER--DDGGLYNSAVVIDPDGEILGRYRKIHL----VPFGEYIPERRYFSPGGDPFPVFETPVFDFG 152 (186)
T ss_dssp HHHHTSEEEEE-EEEE--ETTEEEEEEEEEETTSEEEEEEEGSST----CSTTTTTTHHHHSBEESSESEEEEETETEET
T ss_pred HHhcCCccccc-cccc--ccccccceeEEEEeeecccccccceee----eccccccccceeeeeccceeeeeecceeeec
Confidence 99999999999 5565 567899999999999999999999999 5666555588888887 556666664
Q ss_pred CcceEEEeeccCcchHHHHHHHhcCCceEEEEeCC
Q 019580 206 VGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSA 240 (339)
Q Consensus 206 ~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~ 240 (339)
++|||++||||.+||++.+.++ ++|||+|++|++
T Consensus 153 g~~ig~~ICyd~~fp~~~~~~~-~~ga~il~~~sa 186 (186)
T PF00795_consen 153 GGRIGVLICYDLRFPELVRELA-KQGADILINPSA 186 (186)
T ss_dssp TEEEEEEEGGGGGSHHHHHHHH-HTTESEEEEEE-
T ss_pred cceEEEEEEcccCChHHHHHHH-HCCCCEEEeCCC
Confidence 7999999999999999999999 899999999975
No 45
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=6.2e-31 Score=257.81 Aligned_cols=233 Identities=23% Similarity=0.249 Sum_probs=179.7
Q ss_pred CcccEEEEEEecCcCC----HHHH---HHHHHHHHHHHH--HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHH
Q 019580 59 ASSVRVAVAQMTSIND----LAAN---FATSSRLVKEAA--SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYC 129 (339)
Q Consensus 59 ~~~~rVA~vQ~~~~~d----~~~n---~~~~~~~i~~A~--~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~ 129 (339)
.+.++|+++|.|++.+ .++. ...+..+...+. .+++|+|||||.+. + +...+. + +...++.
T Consensus 225 ~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~-p-~~~~~~-------~-~~~~~~~ 294 (518)
T COG0815 225 EPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETAL-P-FDLTRH-------P-DALARLA 294 (518)
T ss_pred CCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEcccccc-c-cchhhc-------c-hHHHHHH
Confidence 3569999999998633 3322 222222333333 37899999999973 2 222110 1 1356788
Q ss_pred HHHHhcCcEEEEeeeeeecCCCC--ceEEEEEEEcCCCceeeeeeeccc--ccccCCCCCccc--------ccccccCCC
Q 019580 130 SLARESRVWLSLGGFQEKGSDDA--HLCNTHVLVDDAGNIRSTYRKMHL--FDVDIPGGRSYK--------ESSFTEAGK 197 (339)
Q Consensus 130 ~~A~~~~i~iv~Gs~~e~~~~~~--~~yNsa~li~p~G~v~~~y~K~~L--~~~~vP~~~~~~--------E~~~~~~G~ 197 (339)
+.+++.++.+++| ..+..+.++ .+|||+++++++|+.+.+|+|+|| ||||+|+++.+. ....|.+|+
T Consensus 295 ~~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~G~ 373 (518)
T COG0815 295 EALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSRGP 373 (518)
T ss_pred HHHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccCCC
Confidence 8888999999999 333211222 589999999999899999999999 788888764331 233466799
Q ss_pred ceEEEecCCc-ceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCC---CcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 198 DIVAVDSPVG-RLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKV---TGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 198 ~~~vf~~~~~-kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~---~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
...++.++++ |++++||||..||+..|... .+|+|+|++++++.+. .+..+|..+++.||+|+++++++++|+|.
T Consensus 374 ~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~-~qga~~Lin~SNDAWf~~s~~p~QH~~~a~~RAiE~grp~iRAtNtGi 452 (518)
T COG0815 374 GPQVLLLAGGPKIAPLICYEAIFPELVRASA-RQGAELLLNLSNDAWFGGSWGPYQHFQQARVRAVELGRPLVRATNTGI 452 (518)
T ss_pred CCcceecCCCceeeceeeehhhchHHHHHhh-cCCCcEEEEcccccccCCCcchHHHHHHHHHHHHhcCCcEEEEcCCcc
Confidence 9999988775 59999999999999999999 8999999999776543 45677888899999999999999999999
Q ss_pred CCCCCCcceeeEEECCCCCeeeecCCCCCceEEEEEeehhH
Q 019580 274 HNDKRESYGDSLIIDPWGTVIGRLPDRLSTGIAVADIDFSL 314 (339)
Q Consensus 274 ~~~~~~~~G~S~Ii~p~G~ii~~~~~~~~~~vl~~~id~~~ 314 (339)
|++|||+|+++.+.+.+ +.+++.++|.+..
T Consensus 453 ----------SavIdp~Gri~~~l~~~-~~~~l~~~v~~~~ 482 (518)
T COG0815 453 ----------SAVIDPRGRILAQLPYF-TRGVLDATVPLKT 482 (518)
T ss_pred ----------eEEECCCCCEEeecCCC-CcceeeeeecccC
Confidence 99999999999999987 8999999988753
No 46
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=7.7e-31 Score=252.51 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=159.4
Q ss_pred cEEEEEEecCcCC-------HHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHh
Q 019580 62 VRVAVAQMTSIND-------LAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARE 134 (339)
Q Consensus 62 ~rVA~vQ~~~~~d-------~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~ 134 (339)
.+|+++|+|+..+ .+++++++.+++++|.++++|+|||||++ ++.+...+ .+..+.+++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta-~p~~~~~~---------~~~~~~l~~~~-- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETA-FPLALNNS---------PILLDKLKELS-- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcc-cccchhhC---------HHHHHHHHHhc--
Confidence 4999999997533 35789999999999988899999999986 44432211 13566677765
Q ss_pred cCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeeccc--ccccCCCCC---------cccccccccCCCceEEEe
Q 019580 135 SRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHL--FDVDIPGGR---------SYKESSFTEAGKDIVAVD 203 (339)
Q Consensus 135 ~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L--~~~~vP~~~---------~~~E~~~~~~G~~~~vf~ 203 (339)
.++.+++|+... +++++|||+++++ +|+ +..|+|+|| |+||+|... .+.+...+++|++..+++
T Consensus 263 ~~~~ii~G~~~~---~~~~~yNS~~vi~-~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~~~~~~ 337 (418)
T PRK12291 263 HKITIITGALRV---EDGHIYNSTYIFS-KGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASKFSDFT 337 (418)
T ss_pred cCCcEEEeeeec---cCCceEEEEEEEC-CCC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCCCccee
Confidence 478999996543 3457999999998 487 689999999 677888543 134566789999999999
Q ss_pred cCCcceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCC---cHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCc
Q 019580 204 SPVGRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVT---GQAHWEILLRARAIETQCYVIAAAQAGKHNDKRES 280 (339)
Q Consensus 204 ~~~~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~---~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~ 280 (339)
+++.|+|++||||..|||..+ +|+|++++++++.+.. +..+|..+++.||+|||+|+++++|+|.
T Consensus 338 ~~g~~ig~lICYE~~Fpel~r-----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~pvvratNtGi------- 405 (418)
T PRK12291 338 LDGVKFRNAICYEATSEELYE-----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKTIYHSANGSP------- 405 (418)
T ss_pred eCCeEEEEEEeeeecchHhhc-----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCcEEEEcCCce-------
Confidence 999999999999999999985 6899999998755432 3457778899999999999999999999
Q ss_pred ceeeEEECCCC
Q 019580 281 YGDSLIIDPWG 291 (339)
Q Consensus 281 ~G~S~Ii~p~G 291 (339)
|++|||+-
T Consensus 406 ---SavIdp~~ 413 (418)
T PRK12291 406 ---SYIITPKL 413 (418)
T ss_pred ---eEEECcch
Confidence 99999874
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.92 E-value=4.2e-24 Score=203.10 Aligned_cols=190 Identities=19% Similarity=0.079 Sum_probs=142.0
Q ss_pred cEEEEEEecCcCCH-----HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTSINDL-----AANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~~~d~-----~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
.++..++++...+. .++.+++.+.+++|.++|+|+|||||++ ++++.... .+.+++.+++++
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta-~~~~~~~~------------~~~~~~~l~~~~ 252 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESA-LGFWTPTT------------ERLWRESLRGSD 252 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcc-cccccccc------------cHHHHHHHHhCC
Confidence 57888888854211 2445566777888888999999999996 46654311 112456668899
Q ss_pred cEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccc--cccCCCCCcccccccccCCC-ceEEEecCCcceEEEe
Q 019580 137 VWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLF--DVDIPGGRSYKESSFTEAGK-DIVAVDSPVGRLGPTV 213 (339)
Q Consensus 137 i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~--~~~vP~~~~~~E~~~~~~G~-~~~vf~~~~~kigv~I 213 (339)
+.|++|+.. + +++++||++++++++|.. ..|+|+||+ +|++|....+.|..++.+|. +..+|++++.|+|++|
T Consensus 253 i~II~G~~~-~--~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~lI 328 (388)
T PRK13825 253 VTVIAGAAV-V--DPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPLI 328 (388)
T ss_pred CeEEEEeee-c--CCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEEE
Confidence 999999664 3 456799999999998864 599999983 55666544445677777773 3468999999999999
Q ss_pred eccCcc--hHHHHHHHhcCCceEEEEeCCCCCCCc---HHHHHHHHHHHHHhcCcEEEEECCc
Q 019580 214 CYDLRF--PELYQQLRFQHEAQVLLVPSAFTKVTG---QAHWEILLRARAIETQCYVIAAAQA 271 (339)
Q Consensus 214 C~D~~~--pe~~r~~~~~~gadlll~ps~~~~~~~---~~~~~~~~~~rA~en~~~vv~an~~ 271 (339)
|||..| |+..+ . .+|+|+|++|+++....+ ..++..+++.||+|+|++++++.|.
T Consensus 329 CYE~~F~~pel~~--~-~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N~ 388 (388)
T PRK13825 329 CYEQLLVWPVLQS--M-LHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFNR 388 (388)
T ss_pred eeeecCcHHHHHh--h-ccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecCC
Confidence 999988 66533 3 589999999987655433 3466788999999999999999874
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.80 E-value=1.8e-19 Score=168.43 Aligned_cols=253 Identities=18% Similarity=0.165 Sum_probs=193.3
Q ss_pred CcccEEEEEEecCc-CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCC--chHHHHHHHHHHhc
Q 019580 59 ASSVRVAVAQMTSI-NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLD--GPIMQGYCSLARES 135 (339)
Q Consensus 59 ~~~~rVA~vQ~~~~-~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~--~~~~~~l~~~A~~~ 135 (339)
.+.++||.++.|.+ -|++.|.++|++-+++|++.||.+-+=||+- ++||...|.+...++.. .+.+..+..--.-.
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELE-i~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~ 80 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELE-ITGYGCEDHFLESDTLLHSWEMLAELVESPVTQ 80 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCcee-ecCCChHHhhccchHHHHHHHHHHHHHcCCCCC
Confidence 46799999999997 7999999999999999999999999999995 78998876443333332 23333333322224
Q ss_pred CcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceE---------------
Q 019580 136 RVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIV--------------- 200 (339)
Q Consensus 136 ~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~--------------- 200 (339)
++.+.+| .+.. ..+-.||+.+++- +|+++....|+-| .+...|.|.+||+|+....
T Consensus 81 ~il~diG-mPv~--hr~~ryNCrv~~~-n~kil~IRpKm~l-----anDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~ 151 (706)
T KOG2303|consen 81 DILCDIG-MPVM--HRNVRYNCRVLFL-NRKILLIRPKMWL-----ANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHT 151 (706)
T ss_pred CeeEecC-Cchh--hhhhhhccceeec-CCeEEEEccccee-----ccCCCchhhccccccccccccceeeccHHHHHHh
Confidence 8888888 4444 4678999999997 9999999999998 5667789999999887542
Q ss_pred ----------EEecCCcceEEEeeccCcchHHHH-HHHhcCCceEEEEeCCCCCCCcH-HHHHHHHHHHHHhcCcEEEEE
Q 019580 201 ----------AVDSPVGRLGPTVCYDLRFPELYQ-QLRFQHEAQVLLVPSAFTKVTGQ-AHWEILLRARAIETQCYVIAA 268 (339)
Q Consensus 201 ----------vf~~~~~kigv~IC~D~~~pe~~r-~~~~~~gadlll~ps~~~~~~~~-~~~~~~~~~rA~en~~~vv~a 268 (339)
++++-+.-||.-||.|+|.|.... .++ ..|++++.+.+......++ .....+...-...+|--.+++
T Consensus 152 ~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~ma-l~GVei~~NaSGShh~LrK~~~r~~li~~at~k~GGvYlya 230 (706)
T KOG2303|consen 152 GQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMA-LDGVEIITNASGSHHELRKLNTRVDLILNATSKCGGVYLYA 230 (706)
T ss_pred CCeeecccceeeeecccchhHHHHHHHcCCCCcchhhh-hCceEEEecCCccHHHHhhhhhhhHHHhcchhhcceEEEee
Confidence 222223348999999999988766 455 8999999998876544332 222344555566777778889
Q ss_pred CCccCCCCCCCcceeeEEECCCCCeeeecCCC--CCceEEEEEeehhHHHHHHhcCC
Q 019580 269 AQAGKHNDKRESYGDSLIIDPWGTVIGRLPDR--LSTGIAVADIDFSLIDSVRAKMP 323 (339)
Q Consensus 269 n~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~~--~~~~vl~~~id~~~~~~~r~~~~ 323 (339)
|.-|-+++...|.|.|+|+- +|.++++...+ ++-.++.+.||+++++..|....
T Consensus 231 NqrGCDG~RlYydGca~Ia~-NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~~ 286 (706)
T KOG2303|consen 231 NQRGCDGDRLYYDGCAMIAM-NGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASIS 286 (706)
T ss_pred ccCCCCCceeEecchhheee-cceeeeecccccccceEEEEEEecHHHHHHHHhhhc
Confidence 99999888888889888886 99999997766 34568999999999999995433
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=87.78 E-value=3.8 Score=37.83 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=43.3
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
.+....+|+|+|+.|-.+... ..+ .+...++.-|.+++++++.-...-. .++...+=.+.+++|+|
T Consensus 162 ~r~la~~GAdill~ps~~~~~---~~~----------~w~~~~~aRA~En~~~vv~aN~~G~-~~~~~~~G~S~ivdP~G 227 (291)
T cd07565 162 ARECAYKGAELIIRIQGYMYP---AKD----------QWIITNKANAWCNLMYTASVNLAGF-DGVFSYFGESMIVNFDG 227 (291)
T ss_pred HHHHHHCCCeEEEECCcCCCC---cch----------HHHHHHHHHHHhcCcEEEEeccccc-CCCceeeeeeEEECCCC
Confidence 334445799999999865211 111 2445578888899999974322111 11224455678889999
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 228 ~ila~ 232 (291)
T cd07565 228 RTLGE 232 (291)
T ss_pred CEEEe
Confidence 88643
No 50
>PLN02798 nitrilase
Probab=85.39 E-value=4.6 Score=37.01 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=42.8
Q ss_pred HHHHHhcCCceEEEEeCCCC--CCCcH----------HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCC
Q 019580 223 YQQLRFQHEAQVLLVPSAFT--KVTGQ----------AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPW 290 (339)
Q Consensus 223 ~r~~~~~~gadlll~ps~~~--~~~~~----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~ 290 (339)
.+..+ ++|+|+|+.|-.+. ..... ..+...+...|.+++++++.....-...++...+-.+.+++|+
T Consensus 35 i~~A~-~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~ 113 (286)
T PLN02798 35 AKEAA-AAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDS 113 (286)
T ss_pred HHHHH-HCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCC
Confidence 34444 68999999996532 11111 1234456778899999987532211111112455667889999
Q ss_pred CCeee
Q 019580 291 GTVIG 295 (339)
Q Consensus 291 G~ii~ 295 (339)
|+++.
T Consensus 114 G~i~~ 118 (286)
T PLN02798 114 GEIRS 118 (286)
T ss_pred CCEEE
Confidence 99864
No 51
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=83.45 E-value=7 Score=34.89 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCC--CCCcH-----------HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEE
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFT--KVTGQ-----------AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLII 287 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~--~~~~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii 287 (339)
++.+..+ ++|+|+|+.|-.+. ..... ..+...+...|.+++++++..... ...++ ..+=...++
T Consensus 21 ~~i~~a~-~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~-~~yNs~~~i 97 (255)
T cd07581 21 RLLAEAA-AAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMFE-PAGDG-RVYNTLVVV 97 (255)
T ss_pred HHHHHHH-HcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEeee-eCCCC-cEEEeEEEE
Confidence 3445555 78999999994332 11111 134455677889999999875331 11111 345557889
Q ss_pred CCCCCeee
Q 019580 288 DPWGTVIG 295 (339)
Q Consensus 288 ~p~G~ii~ 295 (339)
+|+|+++.
T Consensus 98 ~~~G~i~~ 105 (255)
T cd07581 98 GPDGEIIA 105 (255)
T ss_pred CCCCcEEE
Confidence 99999764
No 52
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=83.37 E-value=4.7 Score=36.20 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=40.5
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCc-eEEEEEEEcC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAH-LCNTHVLVDD 163 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~-~yNsa~li~p 163 (339)
..+....+|+|||++|-.+. ..... ..+...++..|.+++++++.....-. ..++. .+=.+.+++|
T Consensus 161 ~~r~~~~~gadli~~p~~~~---~~~~~---------~~~~~~~~~rA~e~~~~vv~~n~~G~-~~~~~~~~G~S~i~~p 227 (265)
T cd07572 161 LARALARQGADILTVPAAFT---MTTGP---------AHWELLLRARAIENQCYVVAAAQAGD-HEAGRETYGHSMIVDP 227 (265)
T ss_pred HHHHHHHCCCCEEEECCCCC---CCcch---------HHHHHHHHHHHHhcCCEEEEEccccc-CCCCCeecceeEEECC
Confidence 44556678999999996432 11111 01333456678889999986432111 01112 2235777899
Q ss_pred CCcee
Q 019580 164 AGNIR 168 (339)
Q Consensus 164 ~G~v~ 168 (339)
+|+++
T Consensus 228 ~G~il 232 (265)
T cd07572 228 WGEVL 232 (265)
T ss_pred CcHHH
Confidence 99874
No 53
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=82.28 E-value=2 Score=38.16 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=48.8
Q ss_pred HCCCeEEEeCCCCCC-CCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceee
Q 019580 91 SAGAKLLCLPENFSY-VGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRS 169 (339)
Q Consensus 91 ~~gadlIVfPE~~~~-~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~ 169 (339)
+.||+|+.||-.|.. +|. . .+.-.++.-|-+.++|||+.+-.-+..+...-|--++++||-|.+++
T Consensus 184 ~~gA~iLtyPSAFT~~TG~--A-----------HWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva 250 (295)
T KOG0807|consen 184 KMGAQILTYPSAFTIKTGE--A-----------HWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVA 250 (295)
T ss_pred HcCCcEEeccchhhhcccH--H-----------HHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhhe
Confidence 579999999997631 121 1 13345788888999999976433332233356777899999999988
Q ss_pred eeeec
Q 019580 170 TYRKM 174 (339)
Q Consensus 170 ~y~K~ 174 (339)
.+...
T Consensus 251 ~~se~ 255 (295)
T KOG0807|consen 251 RCSER 255 (295)
T ss_pred ecCCC
Confidence 87644
No 54
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=81.20 E-value=10 Score=33.70 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=40.0
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCC-ceEEEEEEEcCCC
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDA-HLCNTHVLVDDAG 165 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~-~~yNsa~li~p~G 165 (339)
+....+|+|+|+.|=.+. ..+. + .....++..|.+++++++.-.. ...+++ ...=.+.+++|+|
T Consensus 152 ~~~~~~gadii~~p~~~~-~~~~--~----------~~~~~~~~rA~en~~~vv~an~--~G~~~~~~~~G~S~i~~p~G 216 (254)
T cd07576 152 RALALAGADLVLVPTALM-EPYG--F----------VARTLVPARAFENQIFVAYANR--CGAEDGLTYVGLSSIAGPDG 216 (254)
T ss_pred HHHHHCCCCEEEECCccC-CCcc--h----------hhhhhhHHHHHhCCCEEEEEcc--cCCCCCceeeeeeEEECCCC
Confidence 334467999999996532 1111 1 1234467778899999875321 111222 2334567889999
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 217 ~il~ 220 (254)
T cd07576 217 TVLA 220 (254)
T ss_pred CEeE
Confidence 8753
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.97 E-value=10 Score=33.95 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceE-EEEEEEcC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLC-NTHVLVDD 163 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~y-Nsa~li~p 163 (339)
+.+...++|+|+|+.|=.+. ....+ .+....+.-|.+++++++.- .....+++..| =.+.+++|
T Consensus 154 ~~r~~~~~gadll~~ps~~~---~~~~~----------~~~~~~~~rA~En~~~vv~~--n~~g~~~~~~~~G~S~ii~p 218 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWR---EQDAD----------IWDINLPARALENTVFVAAV--NRVGNEGDLVLFGKSKILNP 218 (258)
T ss_pred HHHHHHHCCCcEEEECCccC---CCCch----------HHHHHHHHHHHhCCcEEEEE--CccccCCCceecceeEEECC
Confidence 34555668999999996432 11111 12234566788999999842 11111222333 36678899
Q ss_pred CCceee
Q 019580 164 AGNIRS 169 (339)
Q Consensus 164 ~G~v~~ 169 (339)
+|+++.
T Consensus 219 ~G~il~ 224 (258)
T cd07584 219 RGQVLA 224 (258)
T ss_pred CCceee
Confidence 998753
No 56
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=80.77 E-value=7.4 Score=36.12 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=42.4
Q ss_pred HHHHC-CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC-C
Q 019580 88 EAASA-GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA-G 165 (339)
Q Consensus 88 ~A~~~-gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~-G 165 (339)
....+ |+|+|+.|=.|. ..... . .+...++.-|.+++++|+.-. .. .....+-.+.+++|+ |
T Consensus 191 ~la~~~GAdlil~paaw~-~~~~~-~----------~w~~l~~arA~eN~~~vi~~N--~~--g~~~~~G~S~iv~P~~G 254 (299)
T cd07567 191 ELVKKLGVDDIVFPTAWF-SELPF-L----------TAVQIQQAWAYANGVNLLAAN--YN--NPSAGMTGSGIYAGRSG 254 (299)
T ss_pred HHHHhCCCCEEEECCccC-CCCCc-h----------hHHHHHHHHHHHcCceEEEec--CC--CCcCccccceEEcCCCC
Confidence 33345 999999997552 11111 0 234557888999999997532 21 112234567788999 9
Q ss_pred ceeeee
Q 019580 166 NIRSTY 171 (339)
Q Consensus 166 ~v~~~y 171 (339)
+++...
T Consensus 255 ~v~a~~ 260 (299)
T cd07567 255 ALVYHY 260 (299)
T ss_pred cEEEEe
Confidence 987654
No 57
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=80.17 E-value=12 Score=35.61 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
+.+..+.+|||||+-|-.+.. ...+ .....++..|.+++++++.-...-. .++...+=.+.+++|+
T Consensus 174 ~~R~la~~GAelii~psa~~~---~~~~----------~~~~~~rarA~eN~~yVv~aN~~G~-~~~~~~~G~S~Ivdp~ 239 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYMY---PAKE----------QQVLVAKAMAWANNCYVAVANAAGF-DGVYSYFGHSAIIGFD 239 (345)
T ss_pred HHHHHHHcCCeEEEEccccCC---CchH----------HHHHHHHHHHHHCCCEEEEEecccc-cCCceeeeeEEEECCC
Confidence 444455689999999865321 1111 2344567788899999976322211 1122344667889999
Q ss_pred Cceeee
Q 019580 165 GNIRST 170 (339)
Q Consensus 165 G~v~~~ 170 (339)
|+++..
T Consensus 240 G~vla~ 245 (345)
T PRK13286 240 GRTLGE 245 (345)
T ss_pred CcEEEe
Confidence 988644
No 58
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=80.07 E-value=18 Score=32.63 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCC-ceEEEEEEEcCCC
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDA-HLCNTHVLVDDAG 165 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~-~~yNsa~li~p~G 165 (339)
+....+|+|+|+.|=.+... ....+. -...+....+..|.+++++++.-...- .+++ ..+=.+.+++|+|
T Consensus 154 r~~~~~ga~li~~ps~~~~~-~~~~~~------~~~~~~~~~~arA~en~~~vv~~n~~G--~~~~~~~~G~S~ii~p~G 224 (268)
T cd07580 154 RLLALQGADIVCVPTNWVPM-PRPPEG------GPPMANILAMAAAHSNGLFIACADRVG--TERGQPFIGQSLIVGPDG 224 (268)
T ss_pred HHHHHcCCCEEEEcCccccc-CCcccc------cCcHHHHhhHHHHhhCCcEEEEEeeee--eccCceEeeeeEEECCCC
Confidence 33456799999999875311 111000 000122234566788999997532211 1222 3335668999999
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 225 ~~~ 227 (268)
T cd07580 225 WPL 227 (268)
T ss_pred Cee
Confidence 875
No 59
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=79.71 E-value=11 Score=34.01 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=42.6
Q ss_pred HHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCcee
Q 019580 89 AASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIR 168 (339)
Q Consensus 89 A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~ 168 (339)
...+|+|+|+.|=.+...+ ..... .....+...++..|.+++++++.-...-. .++..++-.+.+++|+|+++
T Consensus 155 ~~~~ga~lil~ps~~~~~~-~~~~~-----~~~~~~~~~~~~rA~e~~~~vv~an~~G~-~~~~~~~G~S~ii~p~G~il 227 (269)
T cd07586 155 LALDGADVIFIPANSPARG-VGGDF-----DNEENWETLLKFYAMMNGVYVVFANRVGV-EDGVYFWGGSRVVDPDGEVV 227 (269)
T ss_pred HHHCCCCEEEEeCCCcccc-Ccccc-----chhHHHHHHHHHHHHHhCCeEEEEeeecC-cCCceEeCCcEEECCCCCEE
Confidence 4468999999997642211 10000 00112445677889999999876432211 12223444568889999986
Q ss_pred e
Q 019580 169 S 169 (339)
Q Consensus 169 ~ 169 (339)
.
T Consensus 228 ~ 228 (269)
T cd07586 228 A 228 (269)
T ss_pred E
Confidence 4
No 60
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=78.39 E-value=6.9 Score=35.12 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=41.0
Q ss_pred HHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCc-eEEEEEEEcCCCce
Q 019580 89 AASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAH-LCNTHVLVDDAGNI 167 (339)
Q Consensus 89 A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~-~yNsa~li~p~G~v 167 (339)
...+|+|+|+.|=.+. +..... ......++..|.+++++++.-.. ...+++. ..=.+.+++|+|++
T Consensus 158 ~~~~ga~ll~~ps~~~---~~~~~~--------~~~~~~~~~rA~en~~~vv~~n~--~g~~~~~~~~G~S~ii~p~G~v 224 (261)
T cd07570 158 LALAGADLILNLSASP---FHLGKQ--------DYRRELVSSRSARTGLPYVYVNQ--VGGQDDLVFDGGSFIADNDGEL 224 (261)
T ss_pred HHHcCCcEEEEeCCCc---cccCcH--------HHHHHHHHHHHHHhCCcEEEEeC--CCCCceEEEECceEEEcCCCCE
Confidence 3457999999997542 111110 01334578889999999976432 1112222 23456788999998
Q ss_pred eee
Q 019580 168 RST 170 (339)
Q Consensus 168 ~~~ 170 (339)
+..
T Consensus 225 l~~ 227 (261)
T cd07570 225 LAE 227 (261)
T ss_pred EEe
Confidence 643
No 61
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=77.49 E-value=10 Score=34.54 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=41.7
Q ss_pred HHHHHHhcCCceEEEEeCCC--CCCCc--------------HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeE
Q 019580 222 LYQQLRFQHEAQVLLVPSAF--TKVTG--------------QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSL 285 (339)
Q Consensus 222 ~~r~~~~~~gadlll~ps~~--~~~~~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ 285 (339)
+.+..+ ++|+|+|+.|-.+ +.... ...+...+...|.+++++++..- .-.. .+..++=...
T Consensus 35 ~i~~A~-~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g~-~~~~-~~~~~yNs~~ 111 (287)
T cd07568 35 MIREAA-EAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILPI-YEKE-QGGTLYNTAA 111 (287)
T ss_pred HHHHHH-HcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEEe-EEEc-CCCcEEEEEE
Confidence 344444 6899999999542 21100 01123446778999999998732 1111 1123455578
Q ss_pred EECCCCCeee
Q 019580 286 IIDPWGTVIG 295 (339)
Q Consensus 286 Ii~p~G~ii~ 295 (339)
+++|+|+++.
T Consensus 112 ~i~~~G~i~~ 121 (287)
T cd07568 112 VIDADGTYLG 121 (287)
T ss_pred EECCCCcEee
Confidence 8999999763
No 62
>PLN00202 beta-ureidopropionase
Probab=77.11 E-value=11 Score=36.54 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=43.7
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCCC------c-H--------HHHHHHHHHHHHhcCcEEEEECCccCCC-CCCCcceee
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKVT------G-Q--------AHWEILLRARAIETQCYVIAAAQAGKHN-DKRESYGDS 284 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~~------~-~--------~~~~~~~~~rA~en~~~vv~an~~G~~~-~~~~~~G~S 284 (339)
++.+..+ .+|+|+|+.|-.|.... . . ......++..|.+++++|+.. ..-... .+..++-.+
T Consensus 117 ~li~~Aa-~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G-~~e~~~~~~~~~yNSa 194 (405)
T PLN00202 117 PMIDAAG-AAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP-ILERDVNHGETLWNTA 194 (405)
T ss_pred HHHHHHH-HCCCCEEEecchhccccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE-eeeeecCCCCcEEEEE
Confidence 3444445 68999999995432111 0 0 122345677789999999863 211111 112355667
Q ss_pred EEECCCCCeeee
Q 019580 285 LIIDPWGTVIGR 296 (339)
Q Consensus 285 ~Ii~p~G~ii~~ 296 (339)
.+++|+|+++..
T Consensus 195 ~vI~~~G~iig~ 206 (405)
T PLN00202 195 VVIGNNGNIIGK 206 (405)
T ss_pred EEECCCCcEEEE
Confidence 889999998643
No 63
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=76.99 E-value=11 Score=33.42 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCce
Q 019580 88 EAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNI 167 (339)
Q Consensus 88 ~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v 167 (339)
.+..+|+|+|+.|-.... ... ......++..|.+++++++.-+..-. .++...+-.+.+++|+|++
T Consensus 154 ~~~~~g~dli~~ps~~~~--~~~-----------~~~~~~~~~~A~e~~~~vv~~n~~G~-~~~~~~~G~S~i~~p~G~~ 219 (253)
T cd07197 154 ELALKGADIILVPAAWPT--ARR-----------EHWELLLRARAIENGVYVVAANRVGE-EGGLEFAGGSMIVDPDGEV 219 (253)
T ss_pred HHHHCCCcEEEECCcCCC--cch-----------HHHHHHHHHHHHHhCCeEEEecCCCC-CCCccccceeEEECCCCce
Confidence 345679999999987421 111 12455678889999999986432211 1122445567888999987
Q ss_pred ee
Q 019580 168 RS 169 (339)
Q Consensus 168 ~~ 169 (339)
+.
T Consensus 220 ~~ 221 (253)
T cd07197 220 LA 221 (253)
T ss_pred ee
Confidence 53
No 64
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=76.19 E-value=12 Score=35.72 Aligned_cols=65 Identities=14% Similarity=0.097 Sum_probs=39.5
Q ss_pred HHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCC-----------------CC
Q 019580 90 ASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSD-----------------DA 152 (339)
Q Consensus 90 ~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~-----------------~~ 152 (339)
..+|+|||+.|=.+ ++..... .+...++..|.+++++++.-. ....+ ..
T Consensus 238 a~~GAdiil~Psa~--~~~~~~~----------~w~~~~rarAieN~~fVv~~N--rvG~e~~~~~~~~~~g~~~~~~~~ 303 (363)
T cd07587 238 GLNGAEIVFNPSAT--VGALSEP----------MWPIEARNAAIANSYFTVGIN--RVGTEVFPNEFTSGDGKPAHKDFG 303 (363)
T ss_pred HHcCCcEEEECCCc--CCCCchH----------HHHHHHHHHHHhcCcEEEEec--cccccccccccccccccccccccc
Confidence 45799999999654 2211111 133456777889999997532 21101 02
Q ss_pred ceEEEEEEEcCCCcee
Q 019580 153 HLCNTHVLVDDAGNIR 168 (339)
Q Consensus 153 ~~yNsa~li~p~G~v~ 168 (339)
.++-.+.+++|+|+++
T Consensus 304 ~f~G~S~Ii~P~G~il 319 (363)
T cd07587 304 HFYGSSYVAAPDGSRT 319 (363)
T ss_pred cccceeEEECCCCCCc
Confidence 3566788899999864
No 65
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=76.03 E-value=13 Score=33.19 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCC-ceEEEEEEEcC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDA-HLCNTHVLVDD 163 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~-~~yNsa~li~p 163 (339)
+.+....+|+|+|+.|=.+. .... ..+...++..|.+++++++.-.. ...+++ ..+=.+.+++|
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~--~~~~-----------~~~~~~~~~rA~en~~~vv~~n~--~G~~~~~~~~G~S~ii~p 215 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWP--AARI-----------EHWRTLLRARAIENQAFVVACNR--VGTDGGNEFGGHSMVIDP 215 (253)
T ss_pred HHHHHHHcCCcEEEECCCCC--CCch-----------HHHHHHHHHHHHHhCCEEEEEcC--cccCCCceecceeEEECC
Confidence 44455568999999996531 1111 11333456778889999874221 111222 23445677899
Q ss_pred CCceee
Q 019580 164 AGNIRS 169 (339)
Q Consensus 164 ~G~v~~ 169 (339)
+|+++.
T Consensus 216 ~G~il~ 221 (253)
T cd07583 216 WGEVLA 221 (253)
T ss_pred Cchhhe
Confidence 998754
No 66
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=75.97 E-value=21 Score=31.97 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCc-eEEEEEEEcCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAH-LCNTHVLVDDA 164 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~-~yNsa~li~p~ 164 (339)
.+....+|+|||+.|=.+. ........ ..+...++..|.+++++++.-...-. .++. ..=.+.+++|+
T Consensus 149 ~r~l~~~gadlil~p~~~~-~~~~~~~~--------~~~~~~~~~rA~e~~~~vv~~n~~g~--~~~~~~~G~S~i~~p~ 217 (261)
T cd07585 149 VRATALLGAEILFAPHATP-GTTSPKGR--------EWWMRWLPARAYDNGVFVAACNGVGR--DGGEVFPGGAMILDPY 217 (261)
T ss_pred HHHHHHCCCCEEEECCccC-CCCCcchH--------HHHHHHhHHHHhhcCeEEEEeccccc--CCCceecceEEEECCC
Confidence 3445568999999996432 11101010 11334467778889999875321111 1222 23456788999
Q ss_pred Cceeee
Q 019580 165 GNIRST 170 (339)
Q Consensus 165 G~v~~~ 170 (339)
|+++..
T Consensus 218 G~v~~~ 223 (261)
T cd07585 218 GRVLAE 223 (261)
T ss_pred CCEEec
Confidence 987643
No 67
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=75.35 E-value=16 Score=33.55 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCcEEEEECCccCCCC-CCCcceeeEEECCCCCeeee
Q 019580 252 ILLRARAIETQCYVIAAAQAGKHND-KRESYGDSLIIDPWGTVIGR 296 (339)
Q Consensus 252 ~~~~~rA~en~~~vv~an~~G~~~~-~~~~~G~S~Ii~p~G~ii~~ 296 (339)
..+...|.+++++++..... ...+ ...++-...+++|+|+++..
T Consensus 80 ~~l~~~A~~~~i~iv~G~~e-~~~~~~~~~yNsa~~i~~~G~i~~~ 124 (294)
T cd07582 80 EALGEKAKELNVYIAANAYE-RDPDFPGLYFNTAFIIDPSGEIILR 124 (294)
T ss_pred HHHHHHHHHcCEEEEEeeee-ecCCCCCcEEEEEEEECCCCcEEEE
Confidence 45777899999999875431 1111 12355668889999998753
No 68
>PLN02747 N-carbamolyputrescine amidase
Probab=75.01 E-value=14 Score=34.03 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCceEEEEeCCCCC--CCc--------------HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceee
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTK--VTG--------------QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDS 284 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~--~~~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S 284 (339)
++.+..+ +.|+|+|+.|-.+.. ... .......+...|.+++++++..-. ... +...+-..
T Consensus 29 ~~i~~A~-~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~~-~~~--~~~~yNs~ 104 (296)
T PLN02747 29 RLVREAH-AKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSFF-EEA--NNAHYNSI 104 (296)
T ss_pred HHHHHHH-HCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeeee-ecC--CCceEEEE
Confidence 3455555 789999999954321 100 012334467788999998886422 111 12344456
Q ss_pred EEECCCCCeee
Q 019580 285 LIIDPWGTVIG 295 (339)
Q Consensus 285 ~Ii~p~G~ii~ 295 (339)
.+++|+|+++.
T Consensus 105 ~~i~~~G~i~~ 115 (296)
T PLN02747 105 AIIDADGTDLG 115 (296)
T ss_pred EEECCCCCCcc
Confidence 77899998753
No 69
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=74.57 E-value=25 Score=31.77 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=42.3
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeec---CCCCceEEEEEEEcC
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKG---SDDAHLCNTHVLVDD 163 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~---~~~~~~yNsa~li~p 163 (339)
+....+|+|+|+.|=.+....+.... .....+...++..|.+++++++.-...-.. ..+...+=.+.+++|
T Consensus 160 r~~a~~ga~lil~ps~~~~~~~~~~~------~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p 233 (279)
T TIGR03381 160 RAMALMGAEVLFYPTAIGSEPHDPDL------DSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADH 233 (279)
T ss_pred HHHHHcCCCEEEecCccCCCCccccc------ccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEECC
Confidence 44456799999999754211111100 001124445666788999999753221110 012234467788899
Q ss_pred CCceee
Q 019580 164 AGNIRS 169 (339)
Q Consensus 164 ~G~v~~ 169 (339)
+|+++.
T Consensus 234 ~G~il~ 239 (279)
T TIGR03381 234 TGELVA 239 (279)
T ss_pred CCcEee
Confidence 998864
No 70
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=73.61 E-value=13 Score=33.70 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=40.1
Q ss_pred cCCceEEEEeCCCCCC--CcHHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeee
Q 019580 229 QHEAQVLLVPSAFTKV--TGQAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIG 295 (339)
Q Consensus 229 ~~gadlll~ps~~~~~--~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~ 295 (339)
+.|+|+++.|-..... ..........+..|.+++++++.....-. .++..++-...+++|+|+++.
T Consensus 37 ~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~-~~~~~~~Ns~~~i~~~G~i~~ 104 (270)
T cd07571 37 DEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRRE-PGGGRYYNSALLLDPGGGILG 104 (270)
T ss_pred cCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeec-cCCCceEEEEEEECCCCCCcC
Confidence 5689999999543221 11223344566778899999987544211 111134455778999998653
No 71
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=73.09 E-value=19 Score=33.12 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCceEEEEeCCCCCC--C---------cHH--------------HHHHHHHHHHHhcCcEEEEECCccCCC
Q 019580 221 ELYQQLRFQHEAQVLLVPSAFTKV--T---------GQA--------------HWEILLRARAIETQCYVIAAAQAGKHN 275 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~~~~--~---------~~~--------------~~~~~~~~rA~en~~~vv~an~~G~~~ 275 (339)
++.+..+ .+|+|+|+.|-.+... . +.+ .....+...|.+++++++..... ..
T Consensus 24 ~~i~~A~-~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~- 100 (297)
T cd07564 24 RLIEEAA-ANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVSE-RD- 100 (297)
T ss_pred HHHHHHH-HCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeEe-cc-
Confidence 3455555 6899999999543211 0 001 11234566788999999875322 11
Q ss_pred CCCCcceeeEEECCCCCeeee
Q 019580 276 DKRESYGDSLIIDPWGTVIGR 296 (339)
Q Consensus 276 ~~~~~~G~S~Ii~p~G~ii~~ 296 (339)
+..++-.+.+++|+|+++..
T Consensus 101 -~~~~yNs~~vi~~~G~i~~~ 120 (297)
T cd07564 101 -GGTLYNTQLLIDPDGELLGK 120 (297)
T ss_pred -CCceEEEEEEEcCCCCEeee
Confidence 12345557889999998754
No 72
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=72.95 E-value=20 Score=33.19 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=38.7
Q ss_pred CCceEEEEeCCCCC--CCc-H-H-----------HHHHHHHHHHHhcCcEEEEECCccCCCCC-CCcceeeEEECCCCCe
Q 019580 230 HEAQVLLVPSAFTK--VTG-Q-A-----------HWEILLRARAIETQCYVIAAAQAGKHNDK-RESYGDSLIIDPWGTV 293 (339)
Q Consensus 230 ~gadlll~ps~~~~--~~~-~-~-----------~~~~~~~~rA~en~~~vv~an~~G~~~~~-~~~~G~S~Ii~p~G~i 293 (339)
+|+|+|+.|-.+.. ... . . .....++..|.+++++|+..... ...+. ..++-.+.+++|+|++
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~e-~~~~~~~~~yNta~vi~~~G~i 113 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPE-KVDESSPKLYNSALVVDPEGEV 113 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeeeE-ecCCCCCceEEEEEEEcCCCeE
Confidence 79999999954321 111 0 0 11233456788999999875321 11110 1355668899999997
Q ss_pred ee
Q 019580 294 IG 295 (339)
Q Consensus 294 i~ 295 (339)
+.
T Consensus 114 i~ 115 (295)
T cd07566 114 VF 115 (295)
T ss_pred EE
Confidence 64
No 73
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=72.73 E-value=15 Score=33.04 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 73 NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 73 ~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
++.....+.+.+.++...++|..+++|||..- +... . ..+.-.-.-.+|.+.++.|+-
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR-s~~g--~--------l~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTR-SRGR--G--------LLPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccC-CCCC--C--------CCCccHHHHHHHHHcCCCEEE
Confidence 34455566666666666677899999999952 2111 1 112445577888899999875
No 74
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=69.99 E-value=15 Score=33.07 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeee
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRST 170 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~ 170 (339)
+|+|+|+.|-.+. . .... .+...++.-|.+++++++.-...-...++...+=.+.+++|+|+++..
T Consensus 154 ~gad~i~~~s~~~--~-~~~~----------~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~ 219 (256)
T PRK10438 154 NDYDLALYVANWP--A-PRSL----------HWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIAT 219 (256)
T ss_pred cCCCEEEEecCCC--C-CchH----------HHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEE
Confidence 5799999998652 1 1111 234456778889999997532211100011234567888999998644
No 75
>PLN02504 nitrilase
Probab=67.85 E-value=31 Score=32.73 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeee
Q 019580 253 LLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGR 296 (339)
Q Consensus 253 ~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~ 296 (339)
.+...|.+++++|+..... . .+..++-.+.+++|+|+++..
T Consensus 109 ~l~~~A~~~~i~iv~G~~e-~--~~~~~yNsa~~i~~~G~i~~~ 149 (346)
T PLN02504 109 RLAAMAGKYKVYLVMGVIE-R--DGYTLYCTVLFFDPQGQYLGK 149 (346)
T ss_pred HHHHHHHHcCCEEEEeeee-c--CCCceEEEEEEECCCCCEEeE
Confidence 3566788999999875331 1 112456668889999998643
No 76
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=67.69 E-value=12 Score=29.28 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 78 NFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 78 n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
......+.+.+..++|--+++|||......... .+.-.-+..+|.+.+++|+
T Consensus 76 ~~~~~~~~~~~~l~~~~~i~ifPEG~~~~~~~~-----------~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 76 KNRKALKDIKEILRKGGSIVIFPEGTRSRSGEL-----------LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHHHHC---EEE-TT-S---B--B---------------HHHHHHHHHH-----
T ss_pred ccchhHHHHHHHhhhcceeeecCCccCcCCCcc-----------CCccHHHHHHHHHcCCccc
Confidence 344444455556666555999999853221111 1244456777777788775
No 77
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=67.67 E-value=28 Score=31.45 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=43.4
Q ss_pred HHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCC-CceEEEEEEEcCCCcee
Q 019580 90 ASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDD-AHLCNTHVLVDDAGNIR 168 (339)
Q Consensus 90 ~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~-~~~yNsa~li~p~G~v~ 168 (339)
..+|+|+|+.|-.+. .... .+ .+...++.-|-+++++++..+..-.. +. ...+-.+++++|+|+++
T Consensus 163 a~~Gaeii~~p~a~~-~~~~-~~----------~w~~l~~arA~en~~~vv~~n~~g~~-~~~~~~~G~S~i~~p~G~v~ 229 (274)
T COG0388 163 ALGGAELLLVPAAWP-AERG-LD----------HWEVLLRARAIENQVYVLAANRAGFD-GAGLEFCGHSAIIDPDGEVL 229 (274)
T ss_pred HhcCCeEEEEcCCCC-Cccc-HH----------HHHHHHHHHhhhcCceEEEecccCCC-CCccEEecceEEECCCccEE
Confidence 345899999999863 2221 11 23444777888999999865433221 11 35778889999999864
Q ss_pred e
Q 019580 169 S 169 (339)
Q Consensus 169 ~ 169 (339)
.
T Consensus 230 ~ 230 (274)
T COG0388 230 A 230 (274)
T ss_pred e
Confidence 3
No 78
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=67.42 E-value=29 Score=31.45 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCceEEEEeCCC--CCCCc--------------HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceee
Q 019580 221 ELYQQLRFQHEAQVLLVPSAF--TKVTG--------------QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDS 284 (339)
Q Consensus 221 e~~r~~~~~~gadlll~ps~~--~~~~~--------------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S 284 (339)
++.+..+ +.|+|+++.|-.+ +.... ...+...+...|.+++++++.... -... +..++-..
T Consensus 23 ~~i~~A~-~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~~-~~~~-~~~~yNs~ 99 (284)
T cd07573 23 ELVREAA-AQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSLF-EKRG-NGLYYNSA 99 (284)
T ss_pred HHHHHHH-HCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecce-eeCC-CCcEEEEE
Confidence 3445555 7899999999542 11110 012234567788999999887432 1111 11344557
Q ss_pred EEECCCCCeee
Q 019580 285 LIIDPWGTVIG 295 (339)
Q Consensus 285 ~Ii~p~G~ii~ 295 (339)
.+++|+|+++.
T Consensus 100 ~v~~~~G~i~~ 110 (284)
T cd07573 100 VVIDADGSLLG 110 (284)
T ss_pred EEECCCCCEEe
Confidence 78899998764
No 79
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=66.93 E-value=24 Score=27.46 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 80 ATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 80 ~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
....+.+.++.++|..+++|||... . .. .. ..+...-+..+|++.++.|+.
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG~~-~-~~-~~--------~~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEGTR-S-RG-RD--------ILPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCC-C-CC-CC--------CCCcchhHHHHHHHcCCCEEe
Confidence 3444555566778899999999852 2 11 11 112345577788999998874
No 80
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=66.17 E-value=21 Score=29.93 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHhcCCceEEEEeCCCCCCC--------cH-----------HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceee
Q 019580 224 QQLRFQHEAQVLLVPSAFTKVT--------GQ-----------AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDS 284 (339)
Q Consensus 224 r~~~~~~gadlll~ps~~~~~~--------~~-----------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S 284 (339)
+..+ .+|+|+|+.|-.+.... .. ..+...+...|.+++++++.....- ++ ..++-..
T Consensus 28 ~~a~-~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~~~-~~--~~~~N~~ 103 (186)
T PF00795_consen 28 EEAA-RQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIPER-DD--GGLYNSA 103 (186)
T ss_dssp HHHH-HTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEEEE-ET--TEEEEEE
T ss_pred HHHH-HCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccccc-cc--cccccee
Confidence 3444 67999999995443211 00 1233456778899999998863322 11 1355567
Q ss_pred EEECCCCCee
Q 019580 285 LIIDPWGTVI 294 (339)
Q Consensus 285 ~Ii~p~G~ii 294 (339)
.+++|+|.++
T Consensus 104 ~~~~~~g~~~ 113 (186)
T PF00795_consen 104 VVIDPDGEIL 113 (186)
T ss_dssp EEEETTSEEE
T ss_pred EEEEeeeccc
Confidence 8899999887
No 81
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=66.10 E-value=12 Score=25.81 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 81 TSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 81 ~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
...++++.|+++|.+.+.+-+-..+.+ ...+.+.+++.++.++.|
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~-----------------~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFG-----------------AVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccC-----------------HHHHHHHHHHcCCeEEEE
Confidence 467888999999999999999753322 224667777899999998
No 82
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=64.87 E-value=15 Score=33.24 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEE
Q 019580 79 FATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTH 158 (339)
Q Consensus 79 ~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa 158 (339)
-++-+-++..|..++++++++=|.. +..+.... -++++.+++++++.++.||+- .+..+ ---++-...
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPT--s~LDi~~Q--------~evl~ll~~l~~~~~~tvv~v-lHDlN-~A~ryad~~ 209 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPT--SHLDIAHQ--------IEVLELLRDLNREKGLTVVMV-LHDLN-LAARYADHL 209 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCc--cccCHHHH--------HHHHHHHHHHHHhcCCEEEEE-ecCHH-HHHHhCCEE
Confidence 3455567888999999999999974 33322211 148899999999999999874 44431 111333455
Q ss_pred EEEcCCCcee
Q 019580 159 VLVDDAGNIR 168 (339)
Q Consensus 159 ~li~p~G~v~ 168 (339)
+++. +|+++
T Consensus 210 i~lk-~G~i~ 218 (258)
T COG1120 210 ILLK-DGKIV 218 (258)
T ss_pred EEEE-CCeEE
Confidence 5555 78764
No 83
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=64.22 E-value=20 Score=27.07 Aligned_cols=53 Identities=26% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 77 ANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.+.+.+.+.++ +.++|..+++|||......... .+....+..+|++.+..|+-
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~~~-----------~~~~~g~~~la~~~~~~v~P 112 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPGKL-----------LPFKKGAARLALEAGVPIVP 112 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCCCc-----------CCCcccHHHHHHHcCCCEEe
Confidence 34444444443 5567899999999953222210 01333467788888866653
No 84
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=62.25 E-value=50 Score=29.49 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=38.7
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCC----CC-ceEEEEEEE
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSD----DA-HLCNTHVLV 161 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~----~~-~~yNsa~li 161 (339)
+....+|+|+|+.|-.+. . +. +...++.-|.+++++++.-. ....+ ++ ...-.+.++
T Consensus 151 r~~~~~Gadli~~ps~~~-~----~~-----------~~~~~~~rA~en~~~vv~~n--~~G~~~~~~~~~~~~G~S~i~ 212 (259)
T cd07577 151 RTLALKGADIIAHPANLV-L----PY-----------CPKAMPIRALENRVFTITAN--RIGTEERGGETLRFIGKSQIT 212 (259)
T ss_pred HHHHHcCCCEEEECCccC-C----ch-----------hhhhhhHhhhhcCceEEEEe--cCcccCCCCCCceEeeeeEEE
Confidence 444567999999997542 1 00 12235677788999987522 11101 11 233567888
Q ss_pred cCCCceee
Q 019580 162 DDAGNIRS 169 (339)
Q Consensus 162 ~p~G~v~~ 169 (339)
+|+|+++.
T Consensus 213 ~p~G~i~~ 220 (259)
T cd07577 213 SPKGEVLA 220 (259)
T ss_pred CCCCCEEe
Confidence 99998753
No 85
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=61.82 E-value=4.3 Score=34.65 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=24.6
Q ss_pred Cceeeeeeecccc-----e-eEE--ecccccccceeeee
Q 019580 1 MSFRFHVAHSTPL-----G-KIR--SSSTHQQHHKHILA 31 (339)
Q Consensus 1 ~~~~~~~~~~~~~-----~-~~~--~~~~~~~~~~~~~a 31 (339)
+.|+|||.+++|+ | +++ +|.|+|..+|.-|.
T Consensus 93 ~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYd 131 (229)
T COG3128 93 DFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYD 131 (229)
T ss_pred CcccccccCcccccCCCCCceeEeeeeeeeecCCccccC
Confidence 5799999999998 4 443 68899999996653
No 86
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=61.14 E-value=43 Score=30.80 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=40.8
Q ss_pred HHHHHHhcCCceEEEEeCCCCCC--C-----c---HHH---------HHHHHHHHHHhcCcEEEEECCccCCCCC--CCc
Q 019580 222 LYQQLRFQHEAQVLLVPSAFTKV--T-----G---QAH---------WEILLRARAIETQCYVIAAAQAGKHNDK--RES 280 (339)
Q Consensus 222 ~~r~~~~~~gadlll~ps~~~~~--~-----~---~~~---------~~~~~~~rA~en~~~vv~an~~G~~~~~--~~~ 280 (339)
..+..+ .+|+|+|+.|-.+... . . ... ....+...|.+++++++..... ...++ ..+
T Consensus 30 ~i~~A~-~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~-~~~~~~~~~~ 107 (302)
T cd07569 30 LLEEAA-SRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYAE-LTEDGGVKRR 107 (302)
T ss_pred HHHHHH-hCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEecee-ecCCCCccee
Confidence 344555 6899999999433111 0 0 001 1223556788999999875321 11111 134
Q ss_pred ceeeEEECCCCCeee
Q 019580 281 YGDSLIIDPWGTVIG 295 (339)
Q Consensus 281 ~G~S~Ii~p~G~ii~ 295 (339)
+=...+++|+|+++.
T Consensus 108 yNsa~~i~~~G~i~~ 122 (302)
T cd07569 108 FNTSILVDKSGKIVG 122 (302)
T ss_pred eeEEEEECCCCCEee
Confidence 445788999999864
No 87
>PRK13981 NAD synthetase; Provisional
Probab=59.95 E-value=34 Score=34.56 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=43.3
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceE-EEEEEEcC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLC-NTHVLVDD 163 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~y-Nsa~li~p 163 (339)
..+....+|+|+|+.|=.+ ++..... ......++..|.+++++++.-.. ...+++..| -.+.+++|
T Consensus 153 ~~r~la~~Gadlil~psa~---~~~~~~~--------~~~~~~~~~rA~En~~~vv~aN~--vG~~~~~~f~G~S~i~dp 219 (540)
T PRK13981 153 PAETLAEAGAELLLVPNAS---PYHRGKP--------DLREAVLRARVRETGLPLVYLNQ--VGGQDELVFDGASFVLNA 219 (540)
T ss_pred HHHHHHHCCCcEEEEcCCC---cccCCcH--------HHHHHHHHHHHHHhCCeEEEEec--ccCCCceEEeCceEEECC
Confidence 3344556799999999543 2221110 01334688889999999875322 111222333 46678899
Q ss_pred CCceeee
Q 019580 164 AGNIRST 170 (339)
Q Consensus 164 ~G~v~~~ 170 (339)
+|+++..
T Consensus 220 ~G~il~~ 226 (540)
T PRK13981 220 DGELAAR 226 (540)
T ss_pred CCCEeee
Confidence 9988643
No 88
>PRK13287 amiF formamidase; Provisional
Probab=58.81 E-value=64 Score=30.36 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=39.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCC-CceEEEEEEEcC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDD-AHLCNTHVLVDD 163 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~-~~~yNsa~li~p 163 (339)
+.+....+|||||+-|=.+.. ...+ .+.-..+.-|-+++++++.-. ....++ -..+=.+.+++|
T Consensus 173 ~~R~~a~~GAeill~~s~~~~---~~~~----------~w~~~~~arA~en~~~vv~an--~~G~~~~~~~~G~S~Iidp 237 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYST---QVRE----------QWILTNRSNAWQNLMYTASVN--LAGYDGVFYYFGEGQVCNF 237 (333)
T ss_pred HHHHHHHCCCeEEEECCccCC---cchh----------HHHHHHHHHHHhCCcEEEEEe--ccccCCCeeeeeeeEEECC
Confidence 334445679999998865321 1111 122234555778899886532 111121 123456678899
Q ss_pred CCceeee
Q 019580 164 AGNIRST 170 (339)
Q Consensus 164 ~G~v~~~ 170 (339)
+|+++..
T Consensus 238 ~G~vl~~ 244 (333)
T PRK13287 238 DGTTLVQ 244 (333)
T ss_pred CCcEEEe
Confidence 9988643
No 89
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=57.49 E-value=58 Score=29.66 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=39.4
Q ss_pred HHHHHhcCCceEEEEeCCCCC--CCc-------HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCC
Q 019580 223 YQQLRFQHEAQVLLVPSAFTK--VTG-------QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGT 292 (339)
Q Consensus 223 ~r~~~~~~gadlll~ps~~~~--~~~-------~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ 292 (339)
.+..+ ++|+|+|+.|-.+.. ... .......++..|.+++++++.... ... +..++=...+++|+|.
T Consensus 24 i~~A~-~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~~-~~~--~~~~yNs~~vi~~~G~ 98 (279)
T cd07579 24 AAEAK-ATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGFA-EAD--GDGLYNSAVLVGPEGL 98 (279)
T ss_pred HHHHH-HCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEece-Ecc--CCcEEEEEEEEeCCee
Confidence 33334 679999999954321 110 012344567889999999887532 111 1134455778899984
No 90
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=56.70 E-value=49 Score=29.94 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=47.8
Q ss_pred cccEEEEEEecC-----cC--C---HHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHH
Q 019580 60 SSVRVAVAQMTS-----IN--D---LAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYC 129 (339)
Q Consensus 60 ~~~rVA~vQ~~~-----~~--d---~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~ 129 (339)
..|+|..++... .. + .+..++.+.+.++.|..-|++.|+++......+....+..+ -..+.+..+.
T Consensus 64 ~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~l~ 139 (279)
T TIGR00542 64 TGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRR----RFREGLKEAV 139 (279)
T ss_pred cCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHH----HHHHHHHHHH
Confidence 357777666431 11 2 23567788889999999999999997542111111111111 1124677888
Q ss_pred HHHHhcCcEEEE
Q 019580 130 SLARESRVWLSL 141 (339)
Q Consensus 130 ~~A~~~~i~iv~ 141 (339)
+.|+++|+.+.+
T Consensus 140 ~~A~~~Gv~l~l 151 (279)
T TIGR00542 140 ELAARAQVTLAV 151 (279)
T ss_pred HHHHHcCCEEEE
Confidence 999999998864
No 91
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=56.66 E-value=69 Score=28.54 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=38.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
.+....+|+|+|+.|=.+. .+.... ..+..-|.+++++++.-...-. .++....=.+.+++|+|
T Consensus 155 ~r~~~~~ga~ll~~ps~~~-~~~~~~--------------~~~~~rA~en~~~vv~an~~G~-~~~~~~~G~S~ii~p~G 218 (258)
T cd07578 155 ARLLALGGADVICHISNWL-AERTPA--------------PYWINRAFENGCYLIESNRWGL-ERGVQFSGGSCIIEPDG 218 (258)
T ss_pred HHHHHHcCCCEEEEcCCCC-CCCCcc--------------hHHHHhhhcCCeEEEEecceec-cCCcceeeEEEEECCCC
Confidence 3444567999999997542 111100 1123567788998875422111 12223345678899999
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 219 ~il~ 222 (258)
T cd07578 219 TIQA 222 (258)
T ss_pred cEee
Confidence 8753
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.71 E-value=51 Score=29.65 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 75 LAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 75 ~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.+..++.+.+.++.|+.-|++.|+++... .++........ ....+.++.+.+.|+++|+.+.+
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~--~~~~~~~~~~~--~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH--AGYLTPPNVIW--GRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC--CCCCCCHHHHH--HHHHHHHHHHHHHHHHcCCEEEE
Confidence 34678889999999999999998886542 23222110000 11125788899999999997753
No 93
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=54.48 E-value=30 Score=31.94 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=51.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|. +.|..+... ....+.|++++++.+..|++-+ +... +-..+.+..+++. +|
T Consensus 147 ia~aL~~~P~lliLDEP--t~GLDp~~~--------~~~~~~l~~l~~~g~~tvliss-H~l~-e~~~~~d~v~il~-~G 213 (293)
T COG1131 147 IALALLHDPELLILDEP--TSGLDPESR--------REIWELLRELAKEGGVTILLST-HILE-EAEELCDRVIILN-DG 213 (293)
T ss_pred HHHHHhcCCCEEEECCC--CcCCCHHHH--------HHHHHHHHHHHhCCCcEEEEeC-CcHH-HHHHhCCEEEEEe-CC
Confidence 33555668999999996 467655332 1477889999998877777653 3321 3345577777776 99
Q ss_pred ceeeeeeeccc
Q 019580 166 NIRSTYRKMHL 176 (339)
Q Consensus 166 ~v~~~y~K~~L 176 (339)
+++..-....+
T Consensus 214 ~~~~~g~~~~l 224 (293)
T COG1131 214 KIIAEGTPEEL 224 (293)
T ss_pred EEEEeCCHHHH
Confidence 88665433333
No 94
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=53.94 E-value=1.1e+02 Score=27.27 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=48.4
Q ss_pred CceEEEecCCcceEEEeeccCcc-----------------------------hHHHHHHH-hcCCceEEEEeCCCCCCCc
Q 019580 197 KDIVAVDSPVGRLGPTVCYDLRF-----------------------------PELYQQLR-FQHEAQVLLVPSAFTKVTG 246 (339)
Q Consensus 197 ~~~~vf~~~~~kigv~IC~D~~~-----------------------------pe~~r~~~-~~~gadlll~ps~~~~~~~ 246 (339)
..+.++++++.|||++-|.+... ..+.+... .++++|++++...|+....
T Consensus 119 ~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv~~HwG~e~~ 198 (250)
T PF09587_consen 119 RRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIVSLHWGIEYE 198 (250)
T ss_pred cCeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEEEeccCCCCC
Confidence 35788899999999988876531 11222111 1467999999877764322
Q ss_pred --HHHHHHHHHHHHHhcCcEEEEECCcc
Q 019580 247 --QAHWEILLRARAIETQCYVIAAAQAG 272 (339)
Q Consensus 247 --~~~~~~~~~~rA~en~~~vv~an~~G 272 (339)
...+...+....++.|.-+|..+..-
T Consensus 199 ~~p~~~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 199 NYPTPEQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 23333335555678899999877753
No 95
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=52.11 E-value=34 Score=29.19 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 78 NFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 78 n~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
..+.+.+.++...+. +..+++|||...++ . .......++|++.++.++
T Consensus 87 d~~~i~~~~~~l~~~~~~~~lviFPEGTr~~---~------------~~~~~~~~~a~k~~~p~l 136 (193)
T cd07990 87 DEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT---E------------EKKERSQEFAEKNGLPPL 136 (193)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEeCcccCCC---H------------HHHHHHHHHHHHcCCCCc
Confidence 344555555555443 78899999985321 1 123445578888888775
No 96
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=51.71 E-value=18 Score=24.54 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeeeecCC
Q 019580 254 LRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIGRLPD 299 (339)
Q Consensus 254 ~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~~~~~ 299 (339)
...+++.+|.++-.....|. ..+++|+|+.++-...
T Consensus 9 ~ea~~l~~Gr~l~~~~~~g~----------~aa~~pdG~lvAL~~~ 44 (56)
T PF09142_consen 9 EEARDLRHGRRLPAAGPPGP----------VAAFAPDGRLVALLEE 44 (56)
T ss_dssp HHHHHHHTT---B-----S-----------EEEE-TTS-EEEEEEE
T ss_pred HHHHHHhCCCccCCCCCCce----------EEEECCCCcEEEEEEc
Confidence 45778889999887755554 8999999999887643
No 97
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=48.63 E-value=84 Score=27.92 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=36.0
Q ss_pred CceEEEEeCCCC--CCCcH--------HHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCee
Q 019580 231 EAQVLLVPSAFT--KVTGQ--------AHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVI 294 (339)
Q Consensus 231 gadlll~ps~~~--~~~~~--------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii 294 (339)
|+|+++.|-.+. ..... ......++..|.++++.++.. ....++ ..++-.+.+++|+|.+.
T Consensus 32 gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~-~~~~~~--~~~yNs~~~i~~~G~i~ 102 (252)
T cd07575 32 KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGS-LIIKEG--GKYYNRLYFVTPDGEVY 102 (252)
T ss_pred CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEEE-EEEccC--CceEEEEEEECCCCCEE
Confidence 999999995432 11111 122334667889999877642 221111 23555677899999864
No 98
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=48.40 E-value=86 Score=27.98 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEE
Q 019580 79 FATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTH 158 (339)
Q Consensus 79 ~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa 158 (339)
++.+.+.++++. +++|+||.==-| |..... .+.+.+..+.+.+.+.|+-+|+|+-+-.- .+-..|+..
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw---G~e~~~-------~p~~~q~~~a~~lidaGaDiIiG~HpHv~-q~~E~y~~~ 237 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW---GIEYEN-------YPTPEQRELARALIDAGADIIIGHHPHVI-QPVEIYKGK 237 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc---CCCCCC-------CCCHHHHHHHHHHHHcCCCEEEeCCCCcc-cceEEECCE
Confidence 378888888887 689986653222 322111 23356666777777789999999644322 233455444
Q ss_pred EEEcCCCc
Q 019580 159 VLVDDAGN 166 (339)
Q Consensus 159 ~li~p~G~ 166 (339)
+++-.=|+
T Consensus 238 ~I~YSLGN 245 (250)
T PF09587_consen 238 PIFYSLGN 245 (250)
T ss_pred EEEEeCcc
Confidence 44432444
No 99
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.71 E-value=47 Score=24.91 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=31.2
Q ss_pred cCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 229 QHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 229 ~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
-..+|+++++...-.. .....++..|.++++|++++++.|.
T Consensus 46 i~~aD~VIv~t~~vsH----~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 46 IKKADLVIVFTDYVSH----NAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cCCCCEEEEEeCCcCh----HHHHHHHHHHHHcCCcEEEECCCCH
Confidence 4678999999876432 2233478889999999999997775
No 100
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.65 E-value=1.2e+02 Score=26.71 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHH----CCCeEEEeCCCCC--CCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecC
Q 019580 76 AANFATSSRLVKEAAS----AGAKLLCLPENFS--YVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGS 149 (339)
Q Consensus 76 ~~n~~~~~~~i~~A~~----~gadlIVfPE~~~--~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~ 149 (339)
.+++.+|.++.+.|+. .++|+|++-=..- +.|... +.++.+++++.. ++.++..+....
T Consensus 46 ~EeL~~M~~~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~----------d~ei~~~ie~~~---~v~vvTts~Avv-- 110 (238)
T COG3473 46 PEELLKMESYTERAALELADAGVDVIVYGCTSGSLIGGPGY----------DKEIAQRIEEAK---GVPVVTTSTAVV-- 110 (238)
T ss_pred HHHHHHHHHHHHHHHHhcCccccCEEEEeccceeeecCCch----------hHHHHHHHHhcc---CCceeechHHHH--
Confidence 5788888888877764 5899999875421 112111 123444444443 666665432222
Q ss_pred CCCc--eEEEEEEEcCCCceeeeeeecccccccCCCCCcccccccccCCCceEEEecCCcceEEEeeccCc--ch----H
Q 019580 150 DDAH--LCNTHVLVDDAGNIRSTYRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPTVCYDLR--FP----E 221 (339)
Q Consensus 150 ~~~~--~yNsa~li~p~G~v~~~y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~IC~D~~--~p----e 221 (339)
++-+ --+...++.|-=.-+. -.|..|| ..+++.+.+..+. |+.=--|+. -| +
T Consensus 111 ~aL~al~a~ri~vlTPY~~evn-----------------~~e~ef~-~~~Gfeiv~~~~L--gi~dn~eigr~~P~~~y~ 170 (238)
T COG3473 111 EALNALGAQRISVLTPYIDEVN-----------------QREIEFL-EANGFEIVDFKGL--GITDNLEIGRQEPWAVYR 170 (238)
T ss_pred HHHHhhCcceEEEeccchhhhh-----------------hHHHHHH-HhCCeEEEEeecc--CCcccchhcccChHHHHH
Confidence 1100 0123333333111100 0234444 3456666654321 111111111 12 2
Q ss_pred HHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCcc
Q 019580 222 LYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAG 272 (339)
Q Consensus 222 ~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G 272 (339)
+++... ..++|-|+.+.-... . .......-.+.|.||+.+|.+.
T Consensus 171 lAk~~~-~~~~DaiFiSCTnlR-----t-~eii~~lE~~~G~PVvsSN~AT 214 (238)
T COG3473 171 LAKEVF-TPDADAIFISCTNLR-----T-FEIIEKLERDTGVPVVSSNQAT 214 (238)
T ss_pred HHHHhc-CCCCCeEEEEeeccc-----c-HHHHHHHHHHhCCceeeccHHH
Confidence 444444 678999988732211 1 2234556678999999999864
No 101
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.79 E-value=92 Score=28.02 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 76 AANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 76 ~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
++.++.+.+.++.|..-|++.|++|-.. ..+.... +.......+.++.+.+.|+++|+.+.+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~--~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 90 ERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKS--EETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECCcc--ccccccc--HHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4567888899999999999999987321 1111111 000011124667788889999998864
No 102
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=44.37 E-value=65 Score=27.66 Aligned_cols=24 Identities=33% Similarity=0.275 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCC
Q 019580 80 ATSSRLVKEAASAGAKLLCLPENF 103 (339)
Q Consensus 80 ~~~~~~i~~A~~~gadlIVfPE~~ 103 (339)
....+.+.++.++|-.++||||..
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGt 120 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGG 120 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCC
Confidence 344455556677899999999995
No 103
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=44.37 E-value=99 Score=29.78 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCcEEEE
Q 019580 123 PIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~ 141 (339)
+.++.|.++|+++++.||.
T Consensus 190 ~~~~~l~~~a~~~~~~ii~ 208 (409)
T PLN00143 190 EHLNKIAETARKLGILVIA 208 (409)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 4678899999999998875
No 104
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=42.69 E-value=55 Score=25.68 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=39.6
Q ss_pred cccEEEEEEecC--cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHH
Q 019580 60 SSVRVAVAQMTS--INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYC 129 (339)
Q Consensus 60 ~~~rVA~vQ~~~--~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~ 129 (339)
...+|+.+...- ..+. +-..+++..+-..+++.|++|+..+ .++++.+...+-+++++.+.
T Consensus 4 ~~~~v~~~~s~~~~i~~~----qdalDLi~~~~~~~~~~i~l~~~~l-----~~dFF~L~TglAGeiLQKf~ 66 (113)
T PF13788_consen 4 NGIRVAEVSSDEPLISDE----QDALDLIGTAYEHGADRIILPKEAL-----SEDFFDLRTGLAGEILQKFV 66 (113)
T ss_pred CCeEEEEEeCCCCeecch----hHHHHHHHHHHHcCCCEEEEEhHHC-----CHHHHHhhcchHHHHHHHHH
Confidence 467888887662 3443 3456677777788999999999853 23455555555566544443
No 105
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=42.66 E-value=1e+02 Score=29.40 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=25.5
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..++++|+++-....+|...+ .+.++.+.++|+++++.|+.
T Consensus 166 ~~~~~~v~~~~p~NPtG~~~~----------~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 166 DEKTAALIVNNPSNPCGSVFS----------RQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred ccCceEEEEcCCCCCCCCCCC----------HHHHHHHHHHHHHCCCEEEE
Confidence 345677776433223443322 24677888999999998874
No 106
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=42.50 E-value=62 Score=28.01 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCC--cchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 84 RLVKEAASAGAKLLCLPENFSYVGDKD--GDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 84 ~~i~~A~~~gadlIVfPE~~~~~g~~~--~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+.+.++.++|-.++||||... +.... .+. ...+...-+..+|.+.++.|+-
T Consensus 89 ~~~~~~L~~G~~l~IFPEGtr-s~~~~~~g~~------~~~~fk~G~~~lA~~~~~pIvP 141 (210)
T cd07986 89 REALRHLKNGGALIIFPAGRV-STASPPFGRV------SDRPWNPFVARLARKAKAPVVP 141 (210)
T ss_pred HHHHHHHhCCCEEEEECCccc-ccccccCCcc------ccCCccHHHHHHHHHHCCCEEE
Confidence 334455567889999999952 22111 000 0123445678899999999975
No 107
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=42.21 E-value=98 Score=26.63 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCC
Q 019580 80 ATSSRLVKEAASAGAKLLCLPENF 103 (339)
Q Consensus 80 ~~~~~~i~~A~~~gadlIVfPE~~ 103 (339)
+.+.+.+.+..++|-.+++|||..
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGt 111 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGT 111 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCC
Confidence 344556667778899999999995
No 108
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=42.14 E-value=73 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 78 NFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 78 n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.++.+.+.+++ .++-.++||||... +.. ++.-.-...+|.+.++.|+-
T Consensus 82 ~~~~~~~~l~~--g~~~~l~IFPEGtR-~~~-------------~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 82 LVEQVVEEFRR--REEFVLAIAPEGTR-SKV-------------DKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred HHHHHHHHHHh--CCCcEEEEeCCCCC-CCC-------------cChhhHHHHHHHHcCCCEEE
Confidence 34444444432 13457999999952 221 12345678889999999874
No 109
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=42.05 E-value=76 Score=28.73 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=43.1
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEc
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVD 162 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~ 162 (339)
++.+|...++||+++=|.+ .|...... ..+.+.|.++.++ |+.|++- -+... .-..+++..++++
T Consensus 149 ~lARAL~~~p~lllLDEP~--~gvD~~~~--------~~i~~lL~~l~~e-g~tIl~v-tHDL~-~v~~~~D~vi~Ln 213 (254)
T COG1121 149 LLARALAQNPDLLLLDEPF--TGVDVAGQ--------KEIYDLLKELRQE-GKTVLMV-THDLG-LVMAYFDRVICLN 213 (254)
T ss_pred HHHHHhccCCCEEEecCCc--ccCCHHHH--------HHHHHHHHHHHHC-CCEEEEE-eCCcH-HhHhhCCEEEEEc
Confidence 6788888999999999964 56554321 1467788888888 8988864 22221 1224566666664
No 110
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=39.43 E-value=1.3e+02 Score=25.25 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=43.9
Q ss_pred cEEEEEEecC---c-C------CHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHH
Q 019580 62 VRVAVAQMTS---I-N------DLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSL 131 (339)
Q Consensus 62 ~rVA~vQ~~~---~-~------d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~ 131 (339)
-.+-+++... . . +.++..+.+.++++.+.+.++.+|++--. ....+.... ........+.+.++++
T Consensus 66 pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~-~~~~~~~~~---~~~~~~~~~~~~~~~~ 141 (198)
T cd01821 66 GDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPV-TRRTFDEGG---KVEDTLGDYPAAMREL 141 (198)
T ss_pred CCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCc-cccccCCCC---cccccchhHHHHHHHH
Confidence 3566777663 1 1 45566666777777777788998886321 111111110 0011123577889999
Q ss_pred HHhcCcEEE
Q 019580 132 ARESRVWLS 140 (339)
Q Consensus 132 A~~~~i~iv 140 (339)
|+++++.++
T Consensus 142 a~~~~~~~v 150 (198)
T cd01821 142 AAEEGVPLI 150 (198)
T ss_pred HHHhCCCEE
Confidence 999998874
No 111
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=39.38 E-value=89 Score=29.95 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=37.9
Q ss_pred CceEEEEeCCC-CCCC-c-HHHHHHHHHHHHHhcCcEEEEECCccCCCCCCCcceeeEEECCCCCeee
Q 019580 231 EAQVLLVPSAF-TKVT-G-QAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDSLIIDPWGTVIG 295 (339)
Q Consensus 231 gadlll~ps~~-~~~~-~-~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~Ii~p~G~ii~ 295 (339)
|+|+|+.|-.. +... . .......+...|.+++++++.....-.+++...++-...+++|+|+++.
T Consensus 197 ~~dlVv~PE~a~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~ 264 (391)
T TIGR00546 197 KPDLVVWPETAFPFDLENSPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQ 264 (391)
T ss_pred CCCEEEcCccccccchhhCcHHHHHHHHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccc
Confidence 79999999442 2111 1 1113344666788899998865432111111134555788899998754
No 112
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=38.39 E-value=88 Score=28.23 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 75 LAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 75 ~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.+..++.+.+.++.|.+-|++.|++.-.. ..+...++.. ....+.+..+.+.|+++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~-~~~~~~~~~~----~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGS-YLGQSKEEGL----KRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCC-CCCCCHHHHH----HHHHHHHHHHHHhccCCCCEEEE
Confidence 56778889999999999999998874432 1111111111 11124666777777788988754
No 113
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=38.33 E-value=62 Score=30.49 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCc
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGN 166 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~ 166 (339)
.+|.+.++|+++.-|.|+ ... +-+-.+.++.|.++-++++-+||+=+ +..+ +--++=+...+.. +|+
T Consensus 176 ARAla~~~~IlLMDEaFS--ALD--------PLIR~~mQdeLl~Lq~~l~KTIvFit-HDLd-EAlriG~rIaimk-dG~ 242 (386)
T COG4175 176 ARALANDPDILLMDEAFS--ALD--------PLIRTEMQDELLELQAKLKKTIVFIT-HDLD-EALRIGDRIAIMK-DGE 242 (386)
T ss_pred HHHHccCCCEEEecCchh--hcC--------hHHHHHHHHHHHHHHHHhCCeEEEEe-cCHH-HHHhccceEEEec-CCe
Confidence 466778999999999863 211 11234688889999999998898743 3321 2224555555554 898
Q ss_pred eeee
Q 019580 167 IRST 170 (339)
Q Consensus 167 v~~~ 170 (339)
++..
T Consensus 243 ivQ~ 246 (386)
T COG4175 243 IVQV 246 (386)
T ss_pred EEEe
Confidence 8643
No 114
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.31 E-value=1.2e+02 Score=26.31 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=42.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcC-C
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDD-A 164 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p-~ 164 (339)
+.+|...+++++++=|.+ .+...... ....+.+.++.++.+..|++-+ +... .-..+.+..++++. +
T Consensus 142 la~al~~~p~lllLDEPt--~~LD~~~~--------~~~~~~l~~~~~~~~~tiii~s-H~~~-~~~~~~d~i~~l~~~~ 209 (220)
T cd03293 142 LARALAVDPDVLLLDEPF--SALDALTR--------EQLQEELLDIWRETGKTVLLVT-HDID-EAVFLADRVVVLSARP 209 (220)
T ss_pred HHHHHHcCCCEEEECCCC--CCCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-cCHH-HHHHhCCEEEEEECCC
Confidence 345556689999999963 45443221 1355667777766666666532 2221 11245567777765 6
Q ss_pred Cceeee
Q 019580 165 GNIRST 170 (339)
Q Consensus 165 G~v~~~ 170 (339)
|+++..
T Consensus 210 G~i~~~ 215 (220)
T cd03293 210 GRIVAE 215 (220)
T ss_pred CEEEEE
Confidence 877543
No 115
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=38.27 E-value=1.2e+02 Score=26.39 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 77 ANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
...+.+.+ +.++.++|--+++|||... . . ... ..+...-...+|.+.++.|+.-
T Consensus 107 ~~~~~~~~-~~~~l~~g~~v~IfPEGtr-~-~-~~~--------~~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 107 SQLECLKR-CMELLKKGASVFFFPEGTR-S-K-DGK--------LAAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHH-HHHHHhCCCEEEEeCCCCC-C-C-CCc--------ccCchhhHHHHHHHcCCCEEEE
Confidence 33333333 3344557889999999842 1 1 111 1123444667888999998753
No 116
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.06 E-value=87 Score=26.98 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 142 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tiii~s-H~~~-~~~~~~d~i~~l~-~G 208 (214)
T cd03297 142 LARALAAQPELLLLDEPF--SALDRALR--------LQLLPELKQIKKNLNIPVIFVT-HDLS-EAEYLADRIVVME-DG 208 (214)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCcEEEEEe-cCHH-HHHHhcCEEEEEE-CC
Confidence 445556789999999963 45443221 1356677888777666666532 2221 1123456667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 209 ~i~ 211 (214)
T cd03297 209 RLQ 211 (214)
T ss_pred EEE
Confidence 763
No 117
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=37.10 E-value=1.6e+02 Score=28.61 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhcCcEEEEe
Q 019580 123 PIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~G 142 (339)
+.++.+.++|+++++.|+.-
T Consensus 210 ~~l~~i~~~a~~~~i~ii~D 229 (430)
T PLN00145 210 EHLAKIAETARKLGILVIAD 229 (430)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 46778889999999988753
No 118
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=37.01 E-value=2.2e+02 Score=27.07 Aligned_cols=64 Identities=14% Similarity=-0.023 Sum_probs=46.6
Q ss_pred cceEEEeeccCcchHHHHH-HHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 207 GRLGPTVCYDLRFPELYQQ-LRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r~-~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
.|+.++.+|--..+++.+. +. ..|++=|+.-+..........+ -...++.+.|++|+++.++..
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~-~~g~~GiVie~~G~G~~~~~~~--~~i~~~~~~gi~VV~sSr~~~ 294 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALL-SSGAKGLVLEGTGSGNVTPALI--ESIERASKRGIPVVYSSRCLS 294 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHH-hcCCCEEEEEEECCCCCChHHH--HHHHHHHHCCCeEEEEeccCC
Confidence 6899999999999988885 44 7899988876432222222222 255778899999999999754
No 119
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=36.87 E-value=1.9e+02 Score=27.65 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhcCcEEEEe
Q 019580 123 PIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~G 142 (339)
+.++.+.++|+++++.|+.=
T Consensus 189 ~~~~~i~~~a~~~~~~ii~D 208 (403)
T TIGR01265 189 DHLQKIAEVARKLGIPIIAD 208 (403)
T ss_pred HHHHHHHHHHHHCCCEEEEE
Confidence 35678899999999988753
No 120
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=36.85 E-value=1.3e+02 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.087 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 76 AANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 76 ~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+..++.+.+.++.|+.-|++.|+++-.. .++.... +.......+.++.+.+.|+++|+.+.+
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~~~~--~~~~~~~--~~~~~~~~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLAGYD--VYYEQAN--NETRRRFIDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcc--ccccccH--HHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 4567788899999999999999986321 1111111 001011124667888999999987753
No 121
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=36.73 E-value=1e+02 Score=28.55 Aligned_cols=77 Identities=22% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEE
Q 019580 81 TSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVL 160 (339)
Q Consensus 81 ~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~l 160 (339)
++...+..|.-..++++.+=|.. .|..-.- ...+.+.+++..+++++.|+.-+. ... +-..+.+..++
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpT--vgLDV~a--------q~~ir~Flke~n~~~~aTVllTTH-~~~-di~~lc~rv~~ 229 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPT--VGLDVNA--------QANIREFLKEYNEERQATVLLTTH-IFD-DIATLCDRVLL 229 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCc--cCcchhH--------HHHHHHHHHHHHHhhCceEEEEec-chh-hHHHhhhheEE
Confidence 34444444445678899998863 3443211 124667788888889999988643 321 34578899999
Q ss_pred EcCCCceeee
Q 019580 161 VDDAGNIRST 170 (339)
Q Consensus 161 i~p~G~v~~~ 170 (339)
|+ .|+++..
T Consensus 230 I~-~Gqlv~d 238 (325)
T COG4586 230 ID-QGQLVFD 238 (325)
T ss_pred ee-CCcEeec
Confidence 98 8988754
No 122
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=36.38 E-value=99 Score=27.09 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 125 la~al~~~p~lllLDEPt--~gLD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~~~~~d~v~~l~-~G 191 (230)
T TIGR01184 125 IARALSIRPKVLLLDEPF--GALDALTR--------GNLQEELMQIWEEHRVTVLMVT-HDVD-EALLLSDRVVMLT-NG 191 (230)
T ss_pred HHHHHHcCCCEEEEcCCC--cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhcCEEEEEe-CC
Confidence 445666789999999963 45543321 1356667888777677666543 2221 1124567777776 78
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 192 ~i~~ 195 (230)
T TIGR01184 192 PAAN 195 (230)
T ss_pred cEec
Confidence 7753
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.10 E-value=1.2e+02 Score=27.73 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 77 ANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.|.+...+.|+-|++.|-+-+++=|.+.. ...+.........+...+..|.+-|++.|+-|++
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~--~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYG--WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCG--S--TTT--TT-B-TT--HHHHHHHHHHTT-EEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccc--ccccccccccccCCccCHHHHHHHHHHcCCCEEE
Confidence 47889999999999999999999888732 1111111222334456788999999999977765
No 124
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.84 E-value=1e+02 Score=27.01 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 155 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~t-H~~~-~~~~~~d~v~~l~-~G 221 (241)
T cd03256 155 IARALMQQPKLILADEPV--ASLDPASS--------RQVMDLLKRINREEGITVIVSL-HQVD-LAREYADRIVGLK-DG 221 (241)
T ss_pred HHHHHhcCCCEEEEeCcc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556689999999964 45443221 1356777888776676666532 2221 1223567777887 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 222 ~i~ 224 (241)
T cd03256 222 RIV 224 (241)
T ss_pred EEE
Confidence 774
No 125
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=35.75 E-value=1.4e+02 Score=25.07 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCC--Ccch-hhhhccCCchHHHHHHHHHHhcCcEEEEeee
Q 019580 81 TSSRLVKEAASAGAKLLCLPENFSYVGDK--DGDS-LKVAETLDGPIMQGYCSLARESRVWLSLGGF 144 (339)
Q Consensus 81 ~~~~~i~~A~~~gadlIVfPE~~~~~g~~--~~~~-~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~ 144 (339)
+-.+.++.-++.|.|-||+--.. ..+.. +.+. ...........++.+.+.|.++|+.|.+|.+
T Consensus 21 ~W~~~~~~m~~~GidtlIlq~~~-~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQWTG-YGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEEEee-cCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 44555556666799999988653 22211 1111 0011112456899999999999999999954
No 126
>PLN02656 tyrosine transaminase
Probab=35.53 E-value=1.3e+02 Score=28.84 Aligned_cols=20 Identities=5% Similarity=0.092 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhcCcEEEEe
Q 019580 123 PIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~G 142 (339)
+.++.|.++|+++++.|+.-
T Consensus 189 ~~~~~i~~~a~~~~~~ii~D 208 (409)
T PLN02656 189 QHLKKIAETAEKLKILVIAD 208 (409)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 46778899999999988753
No 127
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=35.43 E-value=2.9e+02 Score=26.01 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=45.4
Q ss_pred cceEEEeeccCcchHHHHHHHhcCCceEEEEeCCC-CCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 207 GRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAF-TKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~-~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
.++.++-|+=-..+++.+.+. ..|++=|+.-+.. +.......|.. ...++.+.|++|+.+++++.
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~-~~~~~GiVl~~~G~Gn~p~~~~~~~-~l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFL-RQPVKALILRSYGVGNAPQNPALLQ-ELKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHH-hCCCCEEEEccCCCCCCCCCHHHHH-HHHHHHHCCCEEEEeCCCCC
Confidence 468888888878899988887 6788877765432 21111123333 55678899999999999864
No 128
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=2.7e+02 Score=27.25 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHhcCcEEEEeeeeeecCCC--------CceEEEEEEEc
Q 019580 122 GPIMQGYCSLARESRVWLSLGGFQEKGSDD--------AHLCNTHVLVD 162 (339)
Q Consensus 122 ~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~--------~~~yNsa~li~ 162 (339)
+++...|.++||+.++++++-+...+ ++ ++.-.+.+.|.
T Consensus 196 Re~t~~L~~~AK~~~i~~fiVGHVTK--eG~IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 196 REVAAELMRLAKTKNIAIFIVGHVTK--EGAIAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcc--cccccCchheeeeeeEEEEEe
Confidence 46888999999999998865444444 33 25677777774
No 129
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.01 E-value=1e+02 Score=26.72 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 142 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tvi~~t-H~~~-~~~~~~d~i~~l~-~G 208 (220)
T cd03265 142 IARSLVHRPEVLFLDEPT--IGLDPQTR--------AHVWEYIEKLKEEFGMTILLTT-HYME-EAEQLCDRVAIID-HG 208 (220)
T ss_pred HHHHHhcCCCEEEEcCCc--cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEe-CC
Confidence 445566789999999964 45443221 1356667788777666666532 2221 1123457777776 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 209 ~i~ 211 (220)
T cd03265 209 RII 211 (220)
T ss_pred EEE
Confidence 774
No 130
>PTZ00261 acyltransferase; Provisional
Probab=34.84 E-value=1.3e+02 Score=28.78 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCCC-CCCCcchhhhhccCCchHHHHHHHHHHhcCcEEE
Q 019580 78 NFATSSRLVKEAASAGAKLLCLPENFSYV-GDKDGDSLKVAETLDGPIMQGYCSLARESRVWLS 140 (339)
Q Consensus 78 n~~~~~~~i~~A~~~gadlIVfPE~~~~~-g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv 140 (339)
..+.+.+.+++..++|-.++||||..-.. +-.. .+.-.-.-.+|.+.++.|+
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~gg~L-----------~pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQVL-----------QTFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCCcCCCCcC-----------CCCcHHHHHHHHHcCCCEE
Confidence 33445555556677899999999995211 1101 1233345667788888885
No 131
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.08 E-value=1.7e+02 Score=26.23 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecC---CCCceEEEEEEEcC
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGS---DDAHLCNTHVLVDD 163 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~---~~~~~yNsa~li~p 163 (339)
+....+|+|+|+.|-.+. .. ... ......++.-|.+++++++.-+-.-... .+...+-.+.+++|
T Consensus 163 r~l~~~ga~ii~~ps~~~-~~--~~~---------~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~P 230 (280)
T cd07574 163 RALAEAGADLLLVPSCTD-TR--AGY---------WRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVYTP 230 (280)
T ss_pred HHHHHcCCCEEEECCcCC-cc--ccH---------HHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccceeecC
Confidence 444568999999996531 11 110 0122335667778899987532211100 01233445667777
Q ss_pred C
Q 019580 164 A 164 (339)
Q Consensus 164 ~ 164 (339)
.
T Consensus 231 ~ 231 (280)
T cd07574 231 C 231 (280)
T ss_pred C
Confidence 5
No 132
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=33.95 E-value=1.4e+02 Score=26.49 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=34.7
Q ss_pred EEEeeccCcchHHHHHHHhcCCceEEEE--eCCCCCCCc--HHHHHHHHHHHHHhcCcEEEEECC
Q 019580 210 GPTVCYDLRFPELYQQLRFQHEAQVLLV--PSAFTKVTG--QAHWEILLRARAIETQCYVIAAAQ 270 (339)
Q Consensus 210 gv~IC~D~~~pe~~r~~~~~~gadlll~--ps~~~~~~~--~~~~~~~~~~rA~en~~~vv~an~ 270 (339)
++++|-|... +...+.. ++|+|+|+. |..|..... ...........+++|++.|+++-.
T Consensus 34 ~V~~~ld~t~-~vi~~A~-~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht 96 (241)
T PF01784_consen 34 KVLVALDATP-EVIEEAI-EKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSAHT 96 (241)
T ss_dssp EEEEESS-SH-HHHHHHH-HTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEESH
T ss_pred EEEEEEeCCH-HHHHHHH-HcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEecc
Confidence 7899999754 4444444 689999997 444432221 122334466778889999988643
No 133
>PRK12677 xylose isomerase; Provisional
Probab=33.87 E-value=2.2e+02 Score=27.49 Aligned_cols=80 Identities=13% Similarity=0.088 Sum_probs=44.8
Q ss_pred cccEEEEEEecCc------------CCH---HHHHHHHHHHHHHHHHCCCe-EEEeCCCCCCCCCCCcchhhhhccCCch
Q 019580 60 SSVRVAVAQMTSI------------NDL---AANFATSSRLVKEAASAGAK-LLCLPENFSYVGDKDGDSLKVAETLDGP 123 (339)
Q Consensus 60 ~~~rVA~vQ~~~~------------~d~---~~n~~~~~~~i~~A~~~gad-lIVfPE~~~~~g~~~~~~~~~a~~~~~~ 123 (339)
..|+|..+.++.. .|. +..++.+.+.|+.|.+-|++ ++|||=.- -..+......+.+.....+
T Consensus 79 ~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~-g~~~~~~~d~~~a~~~~~e 157 (384)
T PRK12677 79 TGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGRE-GAEYDAAKDVRAALDRYRE 157 (384)
T ss_pred cCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCC-CccCcccCCHHHHHHHHHH
Confidence 4688888876621 122 34577788999999999997 55665531 1111111111111112224
Q ss_pred HHHHHHHHHHhc--CcEEE
Q 019580 124 IMQGYCSLARES--RVWLS 140 (339)
Q Consensus 124 ~~~~l~~~A~~~--~i~iv 140 (339)
.++.+.+.|++. ++.+.
T Consensus 158 aL~~l~~~A~~~G~gV~la 176 (384)
T PRK12677 158 AIDLLAAYVKDQGYDLRFA 176 (384)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 566777788774 47654
No 134
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.74 E-value=2.5e+02 Score=22.80 Aligned_cols=72 Identities=8% Similarity=-0.032 Sum_probs=42.3
Q ss_pred EEEEEEecC--c---CCHHHHHHHHHHHHHHHHH--CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhc
Q 019580 63 RVAVAQMTS--I---NDLAANFATSSRLVKEAAS--AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARES 135 (339)
Q Consensus 63 rVA~vQ~~~--~---~d~~~n~~~~~~~i~~A~~--~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~ 135 (339)
.+.+++... . .+.++..+.+.++++.+.+ .++.+|+..=.- ...... .... ...++-+.++++|++.
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p-~~~~~~-~~~~----~~~~~n~~l~~~a~~~ 123 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILP-VGELKS-IPNE----QIEELNRQLAQLAQQE 123 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCC-cCccCc-CCHH----HHHHHHHHHHHHHHHC
Confidence 667777663 1 3456666677777777766 789998864321 111111 0000 1124667788999988
Q ss_pred CcEEE
Q 019580 136 RVWLS 140 (339)
Q Consensus 136 ~i~iv 140 (339)
++.++
T Consensus 124 ~~~~i 128 (169)
T cd01828 124 GVTFL 128 (169)
T ss_pred CCEEE
Confidence 88775
No 135
>PRK07324 transaminase; Validated
Probab=33.55 E-value=1e+02 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=27.8
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..++++|+++-....+|...+ .+.++.+.++|++++++|+.
T Consensus 151 ~~~~kli~i~~p~NPtG~~~~----------~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 151 RPNTKLICINNANNPTGALMD----------RAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred CCCCcEEEEeCCCCCCCCCCC----------HHHHHHHHHHHHHCCCEEEE
Confidence 346778877754434454332 24678899999999998875
No 136
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=33.42 E-value=88 Score=31.27 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhcCcEEEE
Q 019580 123 PIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~ 141 (339)
+.++.|.++|+++++.|+.
T Consensus 301 ~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 301 EVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred HHHHHHHHHHHHcCcEEEE
Confidence 5678899999999998874
No 137
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=33.36 E-value=1.1e+02 Score=26.19 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=41.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 141 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tvi~~s-H~~~-~~~~~~d~i~~l~-~g 207 (213)
T cd03301 141 LGRAIVREPKVFLMDEPL--SNLDAKLR--------VQMRAELKRLQQRLGTTTIYVT-HDQV-EAMTMADRIAVMN-DG 207 (213)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhcCeEEEEE-CC
Confidence 445556689999999963 45443221 1356778888876676666532 2221 1123456667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 208 ~~~ 210 (213)
T cd03301 208 QIQ 210 (213)
T ss_pred EEE
Confidence 764
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.31 E-value=1.3e+02 Score=25.82 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 139 ia~al~~~p~llllDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~~~~~d~i~~l~-~G 205 (211)
T cd03298 139 LARVLVRDKPVLLLDEPF--AALDPALR--------AEMLDLVLDLHAETKMTVLMVT-HQPE-DAKRLAQRVVFLD-NG 205 (211)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HHHhhhCEEEEEE-CC
Confidence 344555689999999964 44443221 1356667777776677776532 2221 1224556777776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 206 ~i~ 208 (211)
T cd03298 206 RIA 208 (211)
T ss_pred EEe
Confidence 764
No 139
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=33.00 E-value=1.1e+02 Score=25.29 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHC-CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEee
Q 019580 86 VKEAASA-GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGG 143 (339)
Q Consensus 86 i~~A~~~-gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs 143 (339)
+.++.++ |..+++|||.....+. . .......-+..+|++.++.|+.-.
T Consensus 93 ~~~~l~~~g~~v~ifPeG~~~~~~--~--------~~~~~~~g~~~la~~~~~~IvPv~ 141 (187)
T cd06551 93 VARLLSKPGSVVWIFPEGTRTRRD--K--------RPLQFKPGVAHLAEKAGVPIVPVA 141 (187)
T ss_pred HHHHHhcCCcEEEEeCCcccCCCC--C--------CcccccchHHHHHHHcCCcEEEEE
Confidence 3345556 8999999998521111 0 111234557888888899998653
No 140
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.89 E-value=1.3e+02 Score=25.80 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 141 la~al~~~p~~lllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~~~~~d~v~~l~-~G 207 (213)
T cd03259 141 LARALAREPSLLLLDEPL--SALDAKLR--------EELREELKELQRELGITTIYVT-HDQE-EALALADRIAVMN-EG 207 (213)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-cCHH-HHHHhcCEEEEEE-CC
Confidence 445566789999999964 45443221 1356677777776676666532 2221 1124556677776 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 208 ~i~ 210 (213)
T cd03259 208 RIV 210 (213)
T ss_pred EEE
Confidence 663
No 141
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.60 E-value=2.2e+02 Score=25.36 Aligned_cols=63 Identities=8% Similarity=-0.075 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 75 LAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 75 ~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.+...+.+.+.++.|.+-|+..|+.+=.....++...+..+ ...+.+..+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~----~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHA----TLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHcCCEEEE
Confidence 34566778889999999999987764221111222211111 1124567778888889987753
No 142
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=32.31 E-value=1e+02 Score=29.24 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=46.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|...+++++++=|.+ .+..+.. ...+++.|+++.++.++.|++- .++.. .-..+.+..++++ +
T Consensus 150 ~IARAL~~~P~iLLlDEPt--s~LD~~t--------~~~i~~lL~~l~~~~g~tiili-TH~~~-~v~~~~d~v~vl~-~ 216 (343)
T TIGR02314 150 AIARALASNPKVLLCDEAT--SALDPAT--------TQSILELLKEINRRLGLTILLI-THEMD-VVKRICDCVAVIS-N 216 (343)
T ss_pred HHHHHHHhCCCEEEEeCCc--ccCCHHH--------HHHHHHHHHHHHHhcCCEEEEE-eCCHH-HHHHhCCEEEEEE-C
Confidence 3456666789999999964 4444322 1246777888888878888764 33321 1224567788887 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 217 G~iv~ 221 (343)
T TIGR02314 217 GELIE 221 (343)
T ss_pred CEEEE
Confidence 98753
No 143
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=31.77 E-value=3.5e+02 Score=23.83 Aligned_cols=61 Identities=5% Similarity=-0.149 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCC-CCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 76 AANFATSSRLVKEAASAGAKLLCLPENFSYVGD-KDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 76 ~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~-~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+...+.+.+.++.|..-|+..|.++-.. .++- ..++.. ....+.++.+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~----~~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 80 EEFREGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEAR----ATLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHHH----HHHHHHHHHHHHHHHhcCCEEEE
Confidence 3445677788888998899888654332 1111 111111 11124677788889999988754
No 144
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=31.65 E-value=1.3e+02 Score=28.17 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=28.3
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
.+++++|++......+|...+ .+.++.+.++|+++++.||.-
T Consensus 134 ~~~~~~i~i~~p~NPtG~~~~----------~~~~~~l~~~a~~~~~~ii~D 175 (350)
T TIGR03537 134 LEETKIVWINYPHNPTGATAP----------RSYLKETIAMCREHGIILCSD 175 (350)
T ss_pred hhccEEEEEeCCCCCcCcccC----------HHHHHHHHHHHHHcCcEEEEe
Confidence 346788777654344554332 246788999999999988753
No 145
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=31.51 E-value=1.6e+02 Score=25.84 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 156 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tiii~t-H~~~-~~~~~~d~v~~l~-~G 222 (243)
T TIGR02315 156 IARALAQQPDLILADEPI--ASLDPKTS--------KQVMDYLKRINKEDGITVIINL-HQVD-LAKKYADRIVGLK-AG 222 (243)
T ss_pred HHHHHhcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhcCeEEEEE-CC
Confidence 445556689999999963 45443221 1356677777766666666532 2221 1224556777776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 223 ~i~ 225 (243)
T TIGR02315 223 EIV 225 (243)
T ss_pred EEE
Confidence 764
No 146
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=31.25 E-value=3.8e+02 Score=23.86 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=42.5
Q ss_pred ccEEEEEEecCc-CCHHHHHHHHHH--------HHHHHHHC-CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHH
Q 019580 61 SVRVAVAQMTSI-NDLAANFATSSR--------LVKEAASA-GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCS 130 (339)
Q Consensus 61 ~~rVA~vQ~~~~-~d~~~n~~~~~~--------~i~~A~~~-gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~ 130 (339)
.||||+++..=. .+.+. ...+.. +..+.... +.|.||+|=.|+.-.|...-+.... .+..+.+++
T Consensus 2 ~~kvaVi~fpGtN~d~d~-~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~----~~v~~~v~~ 76 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDM-AAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAI----APVMDEVRE 76 (231)
T ss_pred CceEEEEEcCCcCchHHH-HHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhh----HHHHHHHHH
Confidence 479999998843 33321 111111 11111122 5899999999875555554332211 468888999
Q ss_pred HHHhcCcEEEEe
Q 019580 131 LARESRVWLSLG 142 (339)
Q Consensus 131 ~A~~~~i~iv~G 142 (339)
++. .+..+ +|
T Consensus 77 ~a~-~g~~v-LG 86 (231)
T COG0047 77 FAE-KGKPV-LG 86 (231)
T ss_pred HHH-CCCeE-EE
Confidence 998 45544 45
No 147
>PLN02187 rooty/superroot1
Probab=31.10 E-value=1.9e+02 Score=28.49 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhcCcEEEE
Q 019580 123 PIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~ 141 (339)
+.++.|.++|++++++||.
T Consensus 224 e~l~~i~~~a~~~~i~iI~ 242 (462)
T PLN02187 224 DHLKKVAETARKLGIMVIS 242 (462)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 4678899999999998874
No 148
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=31.00 E-value=42 Score=31.05 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=31.8
Q ss_pred HhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeeeeeeccccc
Q 019580 133 RESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRSTYRKMHLFD 178 (339)
Q Consensus 133 ~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~y~K~~L~~ 178 (339)
+.++-..+.+. +.++...||+.+|+|-+|..+.+|+|.+++.
T Consensus 110 k~yns~~~~~~----~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 110 KLYNSCADSSC----PGDGLAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred cccCcccccCC----CcchhheeeeeEEeccCCccceeeeeeeccC
Confidence 44555555442 1245689999999999999999999999964
No 149
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.42 E-value=1.5e+02 Score=25.85 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 146 ~ia~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tvi~vs-H~~~-~~~~~~d~v~~l~-~ 212 (235)
T cd03261 146 ALARALALDPELLLYDEPT--AGLDPIAS--------GVIDDLIRSLKKELGLTSIMVT-HDLD-TAFAIADRIAVLY-D 212 (235)
T ss_pred HHHHHHhcCCCEEEecCCc--ccCCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-cCHH-HHHHhcCEEEEEE-C
Confidence 3445666789999999963 45443221 1356677777776566666532 2221 1124567777776 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 213 G~i~~ 217 (235)
T cd03261 213 GKIVA 217 (235)
T ss_pred CeEEE
Confidence 88753
No 150
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=29.98 E-value=3.1e+02 Score=24.60 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred cccEEEEEEecCc-C---CHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCC-CCCcchhhhhcc-CCchHHHHHHHHHH
Q 019580 60 SSVRVAVAQMTSI-N---DLAANFATSSRLVKEAASAGAKLLCLPENFSYVG-DKDGDSLKVAET-LDGPIMQGYCSLAR 133 (339)
Q Consensus 60 ~~~rVA~vQ~~~~-~---d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g-~~~~~~~~~a~~-~~~~~~~~l~~~A~ 133 (339)
+.+|||.+|..-- + ++...-+++.+++.. +|++..|=+.- .. +..-|.....-. -+.+.++.+.++-+
T Consensus 2 ~~ikva~~~L~gC~GC~~slldl~E~L~dll~~-----~div~~~~l~D-~keiPEvDValVEGsV~~ee~lE~v~ElRe 75 (247)
T COG1941 2 EKIKVATVWLTGCSGCHMSLLDLYEKLLDLLED-----ADIVYCPTLVD-EKEIPEVDVALVEGSVCDEEELELVKELRE 75 (247)
T ss_pred cceEEEEEEeccccchHHHHHhHHHHHHHhhhh-----hcEEEeecccc-cccCCcccEEEEecccCcHHHHHHHHHHHH
Confidence 4689999999953 3 233344444444432 47777776531 11 111111100001 14567888889988
Q ss_pred hcCcEEEEeeeee
Q 019580 134 ESRVWLSLGGFQE 146 (339)
Q Consensus 134 ~~~i~iv~Gs~~e 146 (339)
+.++.|-+|+-..
T Consensus 76 kakivVA~GsCA~ 88 (247)
T COG1941 76 KAKIVVALGSCAV 88 (247)
T ss_pred hCcEEEEEecchh
Confidence 8999999997554
No 151
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.96 E-value=88 Score=27.81 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=50.8
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.|.+|..-++++++|=|-. +...+ + .-++.++.+.++|++ |++.++- .+|.. --...-+..++++ +
T Consensus 146 AIARALaM~P~vmLFDEPT--SALDP-E-------lv~EVL~vm~~LA~e-GmTMivV-THEM~-FAr~VadrviFmd-~ 211 (240)
T COG1126 146 AIARALAMDPKVMLFDEPT--SALDP-E-------LVGEVLDVMKDLAEE-GMTMIIV-THEMG-FAREVADRVIFMD-Q 211 (240)
T ss_pred HHHHHHcCCCCEEeecCCc--ccCCH-H-------HHHHHHHHHHHHHHc-CCeEEEE-echhH-HHHHhhheEEEee-C
Confidence 4567777899999999963 33322 2 234688999999987 4555442 44532 1234567777777 8
Q ss_pred Cceeeeeeecccc
Q 019580 165 GNIRSTYRKMHLF 177 (339)
Q Consensus 165 G~v~~~y~K~~L~ 177 (339)
|.++.....-.+|
T Consensus 212 G~iie~g~p~~~f 224 (240)
T COG1126 212 GKIIEEGPPEEFF 224 (240)
T ss_pred CEEEEecCHHHHh
Confidence 9777666555554
No 152
>PRK14099 glycogen synthase; Provisional
Probab=29.88 E-value=2.8e+02 Score=27.48 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=33.9
Q ss_pred ceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 208 RLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 208 kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
++...+.++ .++...+ ..++|+++.||.+.... +....|...|+++|.++..|.
T Consensus 351 ~v~~~~G~~---~~l~~~~--~a~aDifv~PS~~E~fG-------l~~lEAma~G~ppVvs~~GGl 404 (485)
T PRK14099 351 QIGVVIGYD---EALAHLI--QAGADALLVPSRFEPCG-------LTQLCALRYGAVPVVARVGGL 404 (485)
T ss_pred CEEEEeCCC---HHHHHHH--HhcCCEEEECCccCCCc-------HHHHHHHHCCCCcEEeCCCCc
Confidence 455566653 4555544 25799999998753322 345678888976666665554
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=29.80 E-value=3.4e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=40.7
Q ss_pred cceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCc
Q 019580 207 GRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQA 271 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~ 271 (339)
.++|.+|+-.....|-...+. ..|+|+|++-+..+. ....|..+.+.++.-.+..++..|..
T Consensus 237 l~vgaavg~~~~~~~r~~~l~-~ag~d~i~iD~~~g~--~~~~~~~i~~ik~~~p~~~vi~g~v~ 298 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLV-KAGVDVVVLDSSQGD--SIYQLEMIKYIKKTYPELDVIGGNVV 298 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHH-HcCCCEEEEeCCCCC--cHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 457888887655678888888 799999998765432 24555555555554445666655443
No 154
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=29.75 E-value=84 Score=27.73 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|.=.+++++||-|.+ +|..-... ..+..+....++.|-.|++.+..-. +-..+....+++. +|
T Consensus 144 iARAlvh~P~i~vlDEP~--sGLDi~~~---------r~~~dfi~q~k~egr~viFSSH~m~--EvealCDrvivlh-~G 209 (245)
T COG4555 144 IARALVHDPSILVLDEPT--SGLDIRTR---------RKFHDFIKQLKNEGRAVIFSSHIMQ--EVEALCDRVIVLH-KG 209 (245)
T ss_pred HHHHHhcCCCeEEEcCCC--CCccHHHH---------HHHHHHHHHhhcCCcEEEEecccHH--HHHHhhheEEEEe-cC
Confidence 345555789999999964 66543211 1223333344444667777654332 4456788888887 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 210 evv~~ 214 (245)
T COG4555 210 EVVLE 214 (245)
T ss_pred cEEEc
Confidence 88654
No 155
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=29.42 E-value=1.4e+02 Score=26.42 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=42.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 163 ~la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~L~~~~~~~~~tii~~s-H~~~-~~~~~~d~i~~l~-~ 229 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPA--AGLNPKET--------KELDELIAELRNEHNVTVLLIE-HDMK-LVMGISDRIYVVN-Q 229 (255)
T ss_pred HHHHHHhcCCCEEEEcCCc--cCCCHHHH--------HHHHHHHHHHHhhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-C
Confidence 3445666789999999963 45543221 1355667777766677766542 2221 1123456677776 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 230 g~i~~ 234 (255)
T PRK11300 230 GTPLA 234 (255)
T ss_pred CeEEe
Confidence 87753
No 156
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=29.37 E-value=1.2e+02 Score=26.27 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=33.4
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.|.+|.+-.+++++|-|.. +...+ + +-++.+.-++++|++-...+++
T Consensus 162 aIARaLameP~vmLFDEPT--SALDP-E-------lVgEVLkv~~~LAeEgrTMv~V 208 (256)
T COG4598 162 AIARALAMEPEVMLFDEPT--SALDP-E-------LVGEVLKVMQDLAEEGRTMVVV 208 (256)
T ss_pred HHHHHHhcCCceEeecCCc--ccCCH-H-------HHHHHHHHHHHHHHhCCeEEEE
Confidence 4556666788999999863 22222 2 3357899999999998888876
No 157
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=29.21 E-value=1.5e+02 Score=25.57 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 156 laral~~~p~lllLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~~~~~d~i~~l~-~G 222 (228)
T cd03257 156 IARALALNPKLLIADEPT--SALDVSVQ--------AQILDLLKKLQEELGLTLLFIT-HDLG-VVAKIADRVAVMY-AG 222 (228)
T ss_pred HHHHHhcCCCEEEecCCC--CCCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhcCeEEEEe-CC
Confidence 445556789999999964 44433221 1356777888776566665532 2221 1123556777776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 223 ~i~ 225 (228)
T cd03257 223 KIV 225 (228)
T ss_pred EEE
Confidence 763
No 158
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=29.12 E-value=1.4e+02 Score=29.39 Aligned_cols=77 Identities=9% Similarity=0.123 Sum_probs=43.4
Q ss_pred cCcccEEEEEEecCcCCHHHHHHHHHHHHHHH------HHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHH
Q 019580 58 GASSVRVAVAQMTSINDLAANFATSSRLVKEA------ASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSL 131 (339)
Q Consensus 58 ~~~~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A------~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~ 131 (339)
|...+||.+....-..|..+ .+.+...+..+ ..++||+||.- +|.++.-. .....+.+.++
T Consensus 4 ~~~~~~~~i~t~GC~~N~~d-se~~~~~l~~~G~~~~~~~~~aD~ivin-TC~v~~~a-----------~~k~~~~i~~~ 70 (440)
T PRK14862 4 MTAAPKIGFVSLGCPKALVD-SERILTQLRAEGYEISPSYDGADLVIVN-TCGFIDSA-----------VQESLEAIGEA 70 (440)
T ss_pred CCCCCEEEEEEcCCCCcHHH-HHHHHHHHHHCcCEECCCcccCCEEEEe-cccccchH-----------HHHHHHHHHHH
Confidence 33456888877775444433 23333333332 12468888886 33332111 12356677777
Q ss_pred HHhcCcEEEEeeeeee
Q 019580 132 ARESRVWLSLGGFQEK 147 (339)
Q Consensus 132 A~~~~i~iv~Gs~~e~ 147 (339)
.++.+..+|+|++.+.
T Consensus 71 ~~~~~~ivv~GC~a~~ 86 (440)
T PRK14862 71 LAENGKVIVTGCLGAK 86 (440)
T ss_pred HhcCCCEEEECCcccC
Confidence 7767667888998774
No 159
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=29.10 E-value=1.2e+02 Score=27.69 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=43.5
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 156 lAraL~~~P~llllDEPt--~~LD~~~~--------~~l~~~L~~l~~~~g~tviiit-Hd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPT--AGLDPKGR--------KEMMEMFYKLHKEKGLTTVLVT-HSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred HHHHHHcCCCEEEEECCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999963 44443221 1366778888887777776642 2221 1124567778886 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 223 ~i~~ 226 (290)
T PRK13634 223 TVFL 226 (290)
T ss_pred EEEE
Confidence 8753
No 160
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.03 E-value=1.5e+02 Score=25.94 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=42.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-....+..++++ +|
T Consensus 147 la~al~~~p~llllDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tvii~s-H~~~-~~~~~~d~i~~l~-~G 213 (239)
T cd03296 147 LARALAVEPKVLLLDEPF--GALDAKVR--------KELRRWLRRLHDELHVTTVFVT-HDQE-EALEVADRVVVMN-KG 213 (239)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556789999999964 45443221 1356677787776666666532 2221 1123456777776 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 214 ~i~~~ 218 (239)
T cd03296 214 RIEQV 218 (239)
T ss_pred eEEEe
Confidence 77533
No 161
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=28.96 E-value=3.5e+02 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=45.2
Q ss_pred cceEEEeeccCcchHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 207 GRLGPTVCYDLRFPELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
.++.++-++--..+++.+.+. ..|++=|+.-+...... ...+.. ...++.+.+++|+.+++++.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~-~~~~~GlVl~~~G~Gn~-p~~~~~-~l~~a~~~gipVV~~sq~~~ 275 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALL-DSGAKGLVLEGTGAGNV-PPDLLE-ALKEALERGIPVVRTSRCLN 275 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHH-hCCCCEEEEEeeCCCCC-CHHHHH-HHHHHHHCCCEEEEeccCCC
Confidence 579999899888899888776 67888777654322111 123333 44578899999999999864
No 162
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=28.91 E-value=1.8e+02 Score=22.44 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhc-CcEEEEee
Q 019580 80 ATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARES-RVWLSLGG 143 (339)
Q Consensus 80 ~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~-~i~iv~Gs 143 (339)
+++...+++..+.|+|.|.|.=. ...+.... .-+..+.+.+..++. ++.||.|+
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC-~~~~~~~~---------~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSC-MVKGNPHG---------PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCC-EecCCCCC---------CCCCHHHHHHHHHHHhCCCEeeec
Confidence 34444555556789999999875 33322110 112345555555554 99998874
No 163
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=28.44 E-value=2e+02 Score=23.41 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=41.2
Q ss_pred cEEEEEEecCc-----CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTSI-----NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~~-----~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
-.+.+++...- .+.+...+.+.++++.+.+.++++|+..=.. .+.+.. . .....-+.++++|++++
T Consensus 65 pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~~-~~~~~~-~-------~~~~~~~~~~~~a~~~~ 135 (177)
T cd01822 65 PDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQA-PPNYGP-R-------YTRRFAAIYPELAEEYG 135 (177)
T ss_pred CCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC-CCccch-H-------HHHHHHHHHHHHHHHcC
Confidence 35666666531 2455666677777777777789988752110 011111 1 11246677889999999
Q ss_pred cEEE
Q 019580 137 VWLS 140 (339)
Q Consensus 137 i~iv 140 (339)
+.++
T Consensus 136 ~~~~ 139 (177)
T cd01822 136 VPLV 139 (177)
T ss_pred CcEe
Confidence 8665
No 164
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=27.84 E-value=1.2e+02 Score=27.54 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHCCCe-EEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 78 NFATSSRLVKEAASAGAK-LLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 78 n~~~~~~~i~~A~~~gad-lIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+.+...++++.|.+.|+| +++.|-.+ ..... .+..+.++++++..++.|++
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~--~~~~~-----------~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYY--NKPSQ-----------EGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEccccc--CCCCH-----------HHHHHHHHHHHhcCCCCEEE
Confidence 566778888899999999 55555542 11111 24677788888887888875
No 165
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=27.62 E-value=1.4e+02 Score=26.72 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 153 ~laral~~~p~llllDEPt--~gLD~~~~--------~~l~~~L~~l~~~~~~tiii~t-H~~~-~~~~~~d~i~~l~-~ 219 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPT--TWLDISHQ--------IDLLELLSELNREKGYTLAAVL-HDLN-QACRYASHLIALR-E 219 (265)
T ss_pred HHHHHHhcCCCEEEEeCcc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-C
Confidence 3445666789999999963 45543221 1356677777766566666532 2221 1224567777886 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 220 G~i~~ 224 (265)
T PRK10253 220 GKIVA 224 (265)
T ss_pred CEEEE
Confidence 87753
No 166
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=27.60 E-value=67 Score=28.12 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCC
Q 019580 73 NDLAANFATSSRLVKEAASAGAKLLCLPENF 103 (339)
Q Consensus 73 ~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~ 103 (339)
+.-....+.++.++.+|.+++++|.||-|.+
T Consensus 115 G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F 145 (206)
T PF10042_consen 115 GPDNDLNDDLEPYLQRAISDDATIYVFGEPF 145 (206)
T ss_pred CCcchHHHHHHHHHHHHHhCCCEEEEECcee
Confidence 4445667778889999999999999999986
No 167
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.52 E-value=1.3e+02 Score=25.12 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=47.5
Q ss_pred ccEEEEEEecCc-CC-----------HHHHHHHHHHHHHHHHHCCCeEEEeCCCC--CCCCCCCcchhhhhccCCchHHH
Q 019580 61 SVRVAVAQMTSI-ND-----------LAANFATSSRLVKEAASAGAKLLCLPENF--SYVGDKDGDSLKVAETLDGPIMQ 126 (339)
Q Consensus 61 ~~rVA~vQ~~~~-~d-----------~~~n~~~~~~~i~~A~~~gadlIVfPE~~--~~~g~~~~~~~~~a~~~~~~~~~ 126 (339)
.|+|+.+.+... .. .+..++.+.+.++.|..-|++.++++=.. ........+ ......+.++
T Consensus 40 gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~----~~~~~~~~l~ 115 (213)
T PF01261_consen 40 GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEE----NWERLAENLR 115 (213)
T ss_dssp TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHH----HHHHHHHHHH
T ss_pred CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHH----HHHHHHHHHH
Confidence 577777666521 11 34458888889999998999999888331 011111111 1111224778
Q ss_pred HHHHHHHhcCcEEEE
Q 019580 127 GYCSLARESRVWLSL 141 (339)
Q Consensus 127 ~l~~~A~~~~i~iv~ 141 (339)
.+.+.|+++|+.+.+
T Consensus 116 ~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 116 ELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHTSEEEE
T ss_pred HHHhhhhhhcceEEE
Confidence 899999999988754
No 168
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=27.44 E-value=2.1e+02 Score=24.93 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=39.7
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .- ...+..+++. +|
T Consensus 156 la~al~~~p~lllLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tvii~s-H~~~-~~-~~~~~~~~l~-~G 221 (233)
T PRK11629 156 IARALVNNPRLVLADEPT--GNLDARNA--------DSIFQLLGELNRLQGTAFLVVT-HDLQ-LA-KRMSRQLEMR-DG 221 (233)
T ss_pred HHHHHhcCCCEEEEeCCC--CCCCHHHH--------HHHHHHHHHHHHhCCCEEEEEe-CCHH-HH-HhhCEEEEEE-CC
Confidence 345556689999999963 45443221 1355667777665566665532 2221 11 1234555665 78
Q ss_pred ceeeee
Q 019580 166 NIRSTY 171 (339)
Q Consensus 166 ~v~~~y 171 (339)
+++..+
T Consensus 222 ~i~~~~ 227 (233)
T PRK11629 222 RLTAEL 227 (233)
T ss_pred EEEEEe
Confidence 876544
No 169
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=27.38 E-value=1.3e+02 Score=27.46 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHCCCeE-EEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 77 ANFATSSRLVKEAASAGAKL-LCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadl-IVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.+++...++.+.|.+.|+|- ++.|-.+ + .... .+..+.++++++..++.|++
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~y-~-~~~~-----------~~i~~~~~~i~~~~~~pi~l 129 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPYY-N-KPTQ-----------EGLYQHFKAIAEEVDLPIIL 129 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCcC-C-CCCH-----------HHHHHHHHHHHhcCCCCEEE
Confidence 35777888899999999984 5555542 1 1111 24677888888888888875
No 170
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.37 E-value=1.8e+02 Score=25.62 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=41.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... +-..+.+..+++. +|
T Consensus 146 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~L~~~~~~~g~tvii~s-H~~~-~~~~~~d~i~~l~-~G 212 (242)
T cd03295 146 VARALAADPPLLLMDEPF--GALDPITR--------DQLQEEFKRLQQELGKTIVFVT-HDID-EAFRLADRIAIMK-NG 212 (242)
T ss_pred HHHHHhcCCCEEEecCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-cCHH-HHHHhCCEEEEEE-CC
Confidence 345556789999999963 45443221 1356677777776566665532 2221 1224557777777 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 213 ~i~~ 216 (242)
T cd03295 213 EIVQ 216 (242)
T ss_pred EEEE
Confidence 8753
No 171
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.37 E-value=1.6e+02 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=24.2
Q ss_pred EEeeccCcchHHHHHHHhcCCceEEEEeCCC
Q 019580 211 PTVCYDLRFPELYQQLRFQHEAQVLLVPSAF 241 (339)
Q Consensus 211 v~IC~D~~~pe~~r~~~~~~gadlll~ps~~ 241 (339)
+.+.+-+..+|.++.+. ..|||-+++-|+.
T Consensus 205 i~vGFGI~~~e~~~~~~-~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIK-GWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHH-hcCCCEEEECHHH
Confidence 44567788899999988 7899999987664
No 172
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.36 E-value=1.6e+02 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=41.3
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 151 la~al~~~p~lllLDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tvii~s-H~~~-~~~~~~d~i~~l~-~G 217 (233)
T cd03258 151 IARALANNPKVLLCDEAT--SALDPETT--------QSILALLRDINRELGLTIVLIT-HEME-VVKRICDRVAVME-KG 217 (233)
T ss_pred HHHHHhcCCCEEEecCCC--CcCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 345556689999999963 45443221 1355667777776666666532 2221 1124557777776 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 218 ~i~ 220 (233)
T cd03258 218 EVV 220 (233)
T ss_pred EEE
Confidence 775
No 173
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=27.34 E-value=4.2e+02 Score=23.16 Aligned_cols=72 Identities=6% Similarity=-0.060 Sum_probs=40.5
Q ss_pred ceEEEecCCcceEEEeeccCcch---------------------HHHHHHHhcCCceEEEEeCCCCCCCcH--HHHHHHH
Q 019580 198 DIVAVDSPVGRLGPTVCYDLRFP---------------------ELYQQLRFQHEAQVLLVPSAFTKVTGQ--AHWEILL 254 (339)
Q Consensus 198 ~~~vf~~~~~kigv~IC~D~~~p---------------------e~~r~~~~~~gadlll~ps~~~~~~~~--~~~~~~~ 254 (339)
.+.+++.++.|||++-+.+...+ +..+.+. +.+|++++...|+..... ......+
T Consensus 122 ~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr--~~~D~vIv~~H~G~e~~~~p~~~~~~l 199 (239)
T cd07381 122 RPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAK--KKADIVIVSLHWGVEYSYYPTPEQREL 199 (239)
T ss_pred CcEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHh--hcCCEEEEEecCcccCCCCCCHHHHHH
Confidence 46677788888888665543221 1222332 349999998887654321 1111112
Q ss_pred HHHHHhcCcEEEEECCc
Q 019580 255 RARAIETQCYVIAAAQA 271 (339)
Q Consensus 255 ~~rA~en~~~vv~an~~ 271 (339)
....++.|+-++.....
T Consensus 200 a~~l~~~G~D~IiG~H~ 216 (239)
T cd07381 200 ARALIDAGADLVIGHHP 216 (239)
T ss_pred HHHHHHCCCCEEEcCCC
Confidence 23345678888876554
No 174
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=27.16 E-value=43 Score=21.01 Aligned_cols=17 Identities=41% Similarity=0.325 Sum_probs=13.5
Q ss_pred eeeEEECCCCCeeeecC
Q 019580 282 GDSLIIDPWGTVIGRLP 298 (339)
Q Consensus 282 G~S~Ii~p~G~ii~~~~ 298 (339)
|.|+|+-|+|+.+.-..
T Consensus 1 G~SGii~~dG~~~q~~~ 17 (40)
T PF08140_consen 1 GPSGIITPDGTNVQFPH 17 (40)
T ss_pred CCCceECCCCCEEECCc
Confidence 56999999998876544
No 175
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=27.11 E-value=2e+02 Score=23.67 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=42.6
Q ss_pred cEEEEEEecC---c--CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTS---I--NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~---~--~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
-.+.+++... . .+.++..+.+.++++.+.+.++.+|+.--. +...................+-+.++++|++.+
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~-p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~ 138 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPL-PVDDYPWKPQWLRPANKLKSLNRWLKDYARENG 138 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCC-CcCccccchhhcchHHHHHHHHHHHHHHHHHcC
Confidence 4677777653 1 245666667777777777788987776321 111111000000000011246677899999988
Q ss_pred cEEE
Q 019580 137 VWLS 140 (339)
Q Consensus 137 i~iv 140 (339)
+.++
T Consensus 139 v~~v 142 (183)
T cd04501 139 LLFL 142 (183)
T ss_pred CCEE
Confidence 7765
No 176
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=26.96 E-value=1.5e+02 Score=25.91 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=42.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... +-..+.+..+++. +|
T Consensus 136 laral~~~p~vllLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tiii~s-H~~~-~~~~~~d~i~~l~-~G 202 (230)
T TIGR02770 136 IALALLLEPPFLIADEPT--TDLDVVNQ--------ARVLKLLRELRQLFGTGILLIT-HDLG-VVARIADEVAVMD-DG 202 (230)
T ss_pred HHHHHhcCCCEEEEcCCc--cccCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999964 45433221 1356677788776666665532 2211 1224567777776 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 203 ~i~~ 206 (230)
T TIGR02770 203 RIVE 206 (230)
T ss_pred EEEE
Confidence 8753
No 177
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=26.94 E-value=1.1e+02 Score=28.60 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 77 ANFATSSRLVKEAASAG--AKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~g--adlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
-+.+.+.+.+++...++ ..+|+++-....+|...+ .+.++.+.+++++++++|+.
T Consensus 130 ~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~----------~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 130 LDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLS----------LEELRELAELAREYNIIIIV 186 (363)
T ss_dssp ETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB------------HHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccceeeecccccccccccc----------cccccchhhhhcccccceee
Confidence 34555666666655443 588888765445554332 24677888889999999985
No 178
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=26.85 E-value=4.8e+02 Score=25.54 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred ccEEEEEEecCcCCHHHHHHHHHHHHHHHHHCCCeE----EEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 61 SVRVAVAQMTSINDLAANFATSSRLVKEAASAGAKL----LCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 61 ~~rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~gadl----IVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
.++|.-++......+.=..+.+++..++|.+.|..+ |+=|-. ..|.. ++.+.+..+.++|.+.+
T Consensus 192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsN--PLG~~----------~~~e~L~~ll~Fa~~kn 259 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSN--PLGTT----------LSPEELISLLNFASRKN 259 (471)
T ss_pred CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCC--CCCCc----------cCHHHHHHHHHHHhhcc
Confidence 366777777655555556777888888888775543 444443 22322 23468889999999999
Q ss_pred cEEEE
Q 019580 137 VWLSL 141 (339)
Q Consensus 137 i~iv~ 141 (339)
+.+|+
T Consensus 260 iHvI~ 264 (471)
T KOG0256|consen 260 IHVIS 264 (471)
T ss_pred eEEEe
Confidence 99985
No 179
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=26.63 E-value=1.7e+02 Score=25.55 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=41.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..+++-+ +... .-..+-+..+++. +|
T Consensus 140 laral~~~p~lllLDEP~--~gLD~~~~--------~~~~~~l~~~~~~~~~tiii~s-H~~~-~~~~~~d~i~~l~-~g 206 (232)
T PRK10771 140 LARCLVREQPILLLDEPF--SALDPALR--------QEMLTLVSQVCQERQLTLLMVS-HSLE-DAARIAPRSLVVA-DG 206 (232)
T ss_pred HHHHHhcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEE-CCHH-HHHHhCCEEEEEE-CC
Confidence 345556789999999963 45443221 1356677788776666666532 2221 1123446667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 207 ~i~ 209 (232)
T PRK10771 207 RIA 209 (232)
T ss_pred EEE
Confidence 774
No 180
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=26.62 E-value=1.5e+02 Score=26.66 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=41.7
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..++++ +|
T Consensus 160 laral~~~p~lllLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tviivs-H~~~-~~~~~~d~i~~l~-~G 226 (267)
T PRK15112 160 LARALILRPKVIIADEAL--ASLDMSMR--------SQLINLMLELQEKQGISYIYVT-QHLG-MMKHISDQVLVMH-QG 226 (267)
T ss_pred HHHHHHhCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCcEEEEEe-CCHH-HHHHhcCEEEEEE-CC
Confidence 445556689999999964 44433211 1356677888776676666532 2221 1224567778887 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 227 ~i~ 229 (267)
T PRK15112 227 EVV 229 (267)
T ss_pred EEE
Confidence 775
No 181
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=26.52 E-value=1.5e+02 Score=27.91 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..++++ +|
T Consensus 151 lAraL~~~p~iLlLDEPt--s~LD~~~~--------~~l~~~L~~l~~~~g~tiilvt-H~~~-~i~~~~d~v~~l~-~G 217 (343)
T PRK11153 151 IARALASNPKVLLCDEAT--SALDPATT--------RSILELLKDINRELGLTIVLIT-HEMD-VVKRICDRVAVID-AG 217 (343)
T ss_pred HHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445666789999999963 45443221 1366778888877677776642 2221 1124567777887 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 218 ~i~~ 221 (343)
T PRK11153 218 RLVE 221 (343)
T ss_pred EEEE
Confidence 8753
No 182
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=26.30 E-value=2.2e+02 Score=24.44 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=38.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .- ...+..++++ +|
T Consensus 151 la~al~~~p~lllLDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~-~~~d~v~~l~-~G 216 (218)
T cd03255 151 IARALANDPKIILADEPT--GNLDSETG--------KEVMELLRELNKEAGTTIVVVT-HDPE-LA-EYADRIIELR-DG 216 (218)
T ss_pred HHHHHccCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCeEEEEE-CCHH-HH-hhhcEEEEee-CC
Confidence 445556789999999964 45443221 1356677777765566666532 2221 12 2456666665 56
Q ss_pred c
Q 019580 166 N 166 (339)
Q Consensus 166 ~ 166 (339)
+
T Consensus 217 ~ 217 (218)
T cd03255 217 K 217 (218)
T ss_pred c
Confidence 4
No 183
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=26.22 E-value=1.7e+02 Score=26.39 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.++.++.+..|++-+ +... .-....+..+++. +
T Consensus 147 ~laraL~~~p~llilDEPt--~gLD~~~~--------~~l~~~l~~l~~~~g~tvli~t-H~~~-~~~~~~drv~~l~-~ 213 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPT--AGLDPQGV--------KELIDFLNDLPETYGMTVIFST-HQLD-LVPEMADYIYVMD-K 213 (277)
T ss_pred HHHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HHHHhCCEEEEEE-C
Confidence 3556666789999999963 45443221 1356677788776677776532 2221 1124556777776 8
Q ss_pred Ccee
Q 019580 165 GNIR 168 (339)
Q Consensus 165 G~v~ 168 (339)
|+++
T Consensus 214 G~i~ 217 (277)
T PRK13652 214 GRIV 217 (277)
T ss_pred CeEE
Confidence 8775
No 184
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=26.22 E-value=1.7e+02 Score=25.85 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..+++-+ +... .-..+.+..++++ +|
T Consensus 157 laral~~~p~llllDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tiiivs-H~~~-~~~~~~d~i~~l~-~G 223 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVT--SALDPELV--------GEVLNVIRRLASEHDLTMLLVT-HEMG-FAREFADRVCFFD-KG 223 (252)
T ss_pred HHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-CCHH-HHHHhcCEEEEEE-CC
Confidence 445556789999999964 44433221 1356677787776677666532 2221 1123557777776 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 224 ~i~~ 227 (252)
T TIGR03005 224 RIVE 227 (252)
T ss_pred EEEE
Confidence 8753
No 185
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=26.21 E-value=3.3e+02 Score=27.16 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHH--CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 78 NFATSSRLVKEAAS--AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 78 n~~~~~~~i~~A~~--~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..+.+++.++.+.+ .++++|+++=....+|... +.+.++.|.++|+++++.||.
T Consensus 182 ~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~----------s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 182 TVDAADWAYKKAQESNKKVKGLILTNPSNPLGTML----------DKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccC----------CHHHHHHHHHHHHHcCCEEEE
Confidence 34445444444443 3678888763333444433 335788899999999998874
No 186
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.19 E-value=80 Score=29.58 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
-|.+|...++++++.=|.. +...+. ....+++.|+++=+++|++|++= .+|.. --..+.|.+.+++ +
T Consensus 151 aIARALa~~P~iLL~DEaT--SALDP~--------TT~sIL~LL~~In~~lglTIvlI-THEm~-Vvk~ic~rVavm~-~ 217 (339)
T COG1135 151 AIARALANNPKILLCDEAT--SALDPE--------TTQSILELLKDINRELGLTIVLI-THEME-VVKRICDRVAVLD-Q 217 (339)
T ss_pred HHHHHHhcCCCEEEecCcc--ccCChH--------HHHHHHHHHHHHHHHcCCEEEEE-echHH-HHHHHhhhheEee-C
Confidence 3556777889999999963 333322 12358889999999999999874 44431 1236789999998 8
Q ss_pred Cceeeeee
Q 019580 165 GNIRSTYR 172 (339)
Q Consensus 165 G~v~~~y~ 172 (339)
|+++-.-.
T Consensus 218 G~lvE~G~ 225 (339)
T COG1135 218 GRLVEEGT 225 (339)
T ss_pred CEEEEecc
Confidence 98864433
No 187
>PRK07475 hypothetical protein; Provisional
Probab=26.19 E-value=57 Score=29.25 Aligned_cols=77 Identities=8% Similarity=0.116 Sum_probs=44.7
Q ss_pred eecccceeEEecccccccceeeeeeecCCCCCcceeeeccccccchHHhccCcccEEEEEEecCcCCHHHHHHHHHHHHH
Q 019580 8 AHSTPLGKIRSSSTHQQHHKHILAKRCGSTSSNSVSVKSRAGELDSVIMAGASSVRVAVAQMTSINDLAANFATSSRLVK 87 (339)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVA~vQ~~~~~d~~~n~~~~~~~i~ 87 (339)
....++|+|-|...--...=++ |...++..+.+++..+ ... +..-+.++.+.-+..+.+.++
T Consensus 11 ~~~~~~gil~l~~~~p~~pgd~-----~~~~t~~~pv~~~~v~-g~~------------~~~~~~~~~~~~~~~l~~aa~ 72 (245)
T PRK07475 11 IYGASIGILMLDTRFPRIPGDV-----GNAATWPFPVRYKVVR-GAT------------PERVVEGDDPSLLDAFVAAAR 72 (245)
T ss_pred ccCCceeEEEeccCCCCCCCCC-----CCcccCCcCEEEEeeC-CCC------------HHHHhcCCCccHHHHHHHHHH
Confidence 3467899999984332333334 5566665555544432 100 000011333445777888888
Q ss_pred HHHHCCCeEEEeCCC
Q 019580 88 EAASAGAKLLCLPEN 102 (339)
Q Consensus 88 ~A~~~gadlIVfPE~ 102 (339)
+..+.|+|.|++|=.
T Consensus 73 ~L~~~G~d~I~~~Cg 87 (245)
T PRK07475 73 ELEAEGVRAITTSCG 87 (245)
T ss_pred HHHHcCCCEEEechH
Confidence 888889999999864
No 188
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=26.01 E-value=2.9e+02 Score=24.07 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=41.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.+++++.+..+++-+ +... .- ...+..++++ +
T Consensus 142 ~laral~~~p~llllDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tiii~s-H~~~-~~-~~~d~i~~l~-~ 207 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPT--VGLDPASR--------AAIVAHVRALCRDQGLSVLWAT-HLVD-EI-EADDRLVVLH-R 207 (236)
T ss_pred HHHHHHhcCCCEEEEcCCc--cCCCHHHH--------HHHHHHHHHHHHhCCCEEEEEe-cChh-hH-hhCCEEEEEe-C
Confidence 3445666789999999964 45544321 1356677787765566665532 2221 11 2256667776 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 208 G~i~~ 212 (236)
T TIGR03864 208 GRVLA 212 (236)
T ss_pred CeEEE
Confidence 87753
No 189
>smart00642 Aamy Alpha-amylase domain.
Probab=25.92 E-value=2.7e+02 Score=23.21 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCC-------CCCCCCcchhhhhccC-CchHHHHHHHHHHhcCcEEEEeeee
Q 019580 79 FATSSRLVKEAASAGAKLLCLPENFS-------YVGDKDGDSLKVAETL-DGPIMQGYCSLARESRVWLSLGGFQ 145 (339)
Q Consensus 79 ~~~~~~~i~~A~~~gadlIVfPE~~~-------~~g~~~~~~~~~a~~~-~~~~~~~l~~~A~~~~i~iv~Gs~~ 145 (339)
++.+.+.+...++.|++.|.++-.+. ..||...+.....+.+ ..+.++.|.+.|++.|+.|++=.+.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 44444445555667999998776531 1234444433333322 2367788888999999999876433
No 190
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.60 E-value=3e+02 Score=22.60 Aligned_cols=76 Identities=9% Similarity=-0.080 Sum_probs=42.0
Q ss_pred cEEEEEEecC------cCCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhc
Q 019580 62 VRVAVAQMTS------INDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARES 135 (339)
Q Consensus 62 ~rVA~vQ~~~------~~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~ 135 (339)
-.+.++.... ..+.++..+.+..+++.+...++++|++.-. ....... ..........+.-+.++++|+++
T Consensus 68 ~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~-~~~~~~~--~~~~~~~~~~~~n~~l~~~a~~~ 144 (185)
T cd01832 68 PDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIP-DPAVLEP--FRRRVRARLAAYNAVIRAVAARY 144 (185)
T ss_pred CCEEEEeccccccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCC-Cccccch--hHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566665552 1344555666667777776778998887532 1101111 00000001234667789999998
Q ss_pred CcEEE
Q 019580 136 RVWLS 140 (339)
Q Consensus 136 ~i~iv 140 (339)
++.++
T Consensus 145 ~v~~v 149 (185)
T cd01832 145 GAVHV 149 (185)
T ss_pred CCEEE
Confidence 87664
No 191
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.55 E-value=2.5e+02 Score=22.93 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=40.6
Q ss_pred cEEEEEEecC---c-C-----CHHHHHHHHHHHHHHH--HHCCCeEEEeCCCCCCCCCCCc-chhhhhccCCchHHHHHH
Q 019580 62 VRVAVAQMTS---I-N-----DLAANFATSSRLVKEA--ASAGAKLLCLPENFSYVGDKDG-DSLKVAETLDGPIMQGYC 129 (339)
Q Consensus 62 ~rVA~vQ~~~---~-~-----d~~~n~~~~~~~i~~A--~~~gadlIVfPE~~~~~g~~~~-~~~~~a~~~~~~~~~~l~ 129 (339)
-++.+++... . . +.+...+.+.++++.+ ...++.+|+..=.. ....... ............+.+.++
T Consensus 62 ~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~-~~~~~~~~~~~~~~~~~~~~~n~~l~ 140 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIA-YEANEDPLPDGAEYNANLAAYADAVR 140 (191)
T ss_pred CCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHcccCCCcEEEECCcc-cCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 4677777763 1 1 3455555666666665 45678887764221 1111000 000001111234667788
Q ss_pred HHHHhcCcEEE
Q 019580 130 SLARESRVWLS 140 (339)
Q Consensus 130 ~~A~~~~i~iv 140 (339)
++|+++++.++
T Consensus 141 ~~a~~~~~~~i 151 (191)
T cd01834 141 ELAAENGVAFV 151 (191)
T ss_pred HHHHHcCCeEE
Confidence 99999988775
No 192
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.49 E-value=1.8e+02 Score=25.75 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=54.9
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeee
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRST 170 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~ 170 (339)
.++.|.|++-|.. . +.+-.. .....+.++++|++++-.||+- .+..+ -. ..|.--++--.+|+++..
T Consensus 151 aQdTdyvlLDEPL--N--NLDmkH------sv~iMk~Lrrla~el~KtiviV-lHDIN-fA-S~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 151 AQDTDYVLLDEPL--N--NLDMKH------SVQIMKILRRLADELGKTIVVV-LHDIN-FA-SCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred eccCcEEEecCcc--c--ccchHH------HHHHHHHHHHHHHHhCCeEEEE-Eeccc-HH-HhhhhheeeecCCEEEec
Confidence 5678999999952 1 221111 1247888999999999888863 44432 11 223222333347877654
Q ss_pred eeecccccccCCCCCcccccccccCCCceEEEecCCcceEEE
Q 019580 171 YRKMHLFDVDIPGGRSYKESSFTEAGKDIVAVDSPVGRLGPT 212 (339)
Q Consensus 171 y~K~~L~~~~vP~~~~~~E~~~~~~G~~~~vf~~~~~kigv~ 212 (339)
-.+-.+.. | + .-+..| ...+.+.+.++.||++.
T Consensus 218 G~~~eii~---~--~--~L~eiy--dm~i~v~~i~g~kIcvy 250 (252)
T COG4604 218 GSPDEIIQ---P--E--ILSEIY--DMDIPVEEINGKKICVY 250 (252)
T ss_pred CCHHHhcC---H--H--HHHHHh--cCCceeEEeCCcEEEEE
Confidence 44433311 0 0 001111 23567888888888764
No 193
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.36 E-value=1.7e+02 Score=25.63 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 164 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tiiivs-H~~~-~~~~~~d~i~~l~-~G 230 (236)
T cd03267 164 IAAALLHEPEILFLDEPT--IGLDVVAQ--------ENIRNFLKEYNRERGTTVLLTS-HYMK-DIEALARRVLVID-KG 230 (236)
T ss_pred HHHHHhcCCCEEEEcCCC--CCCCHHHH--------HHHHHHHHHHHhcCCCEEEEEe-cCHH-HHHHhCCEEEEEe-CC
Confidence 445566789999999964 44443221 1356667777776566666532 2221 1123455666665 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 231 ~i~ 233 (236)
T cd03267 231 RLL 233 (236)
T ss_pred EEE
Confidence 663
No 194
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=25.32 E-value=1.3e+02 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeee
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGF 144 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~ 144 (339)
.+++|.+.|++++|-|=.. ..+.+.|+++++.++-|..
T Consensus 72 ~a~~a~~aGA~FivSP~~~----------------------~~v~~~~~~~~i~~iPG~~ 109 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPGFD----------------------PEVIEYAREYGIPYIPGVM 109 (196)
T ss_dssp HHHHHHHHT-SEEEESS------------------------HHHHHHHHHHTSEEEEEES
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCcccCCcC
Confidence 5567777899999998531 3588999999999999854
No 195
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=83 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=18.5
Q ss_pred eEEEEEEEcCCCceeeeeeeccc
Q 019580 154 LCNTHVLVDDAGNIRSTYRKMHL 176 (339)
Q Consensus 154 ~yNsa~li~p~G~v~~~y~K~~L 176 (339)
.--++++|+++|.+...+++...
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCC
Confidence 45688999999999888866654
No 196
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=25.21 E-value=1.9e+02 Score=25.72 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=42.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 162 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~is-H~~~-~~~~~~d~i~~l~-~g 228 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPT--GGLDVSVQ--------ARLLDLLRGLVRELGLAVVIVT-HDLA-VARLLAHRLLVMK-QG 228 (258)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-CCHH-HHHHhcCEEEEEE-CC
Confidence 445556789999999964 44433211 1355667777776677776542 2221 1223567777776 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 229 ~i~~ 232 (258)
T PRK11701 229 RVVE 232 (258)
T ss_pred EEEE
Confidence 7753
No 197
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=25.13 E-value=2.1e+02 Score=19.22 Aligned_cols=42 Identities=10% Similarity=-0.093 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEE
Q 019580 80 ATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWL 139 (339)
Q Consensus 80 ~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~i 139 (339)
+.+.+.++.-.....|.+-||.+.. .....+.++|+.+++.-
T Consensus 2 ~~i~~~i~~F~~~~~~~~~fppm~~------------------~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 2 EDIKDEIEAFLLDSRDSLSFPPMDK------------------HGRKTIHKLANCYNLKS 43 (58)
T ss_pred hHHHHHHHHHHhCCCceEecCCCCH------------------HHHHHHHHHHHHcCCcc
Confidence 3455555555556688999999632 24566899999988754
No 198
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.08 E-value=1.5e+02 Score=28.06 Aligned_cols=47 Identities=23% Similarity=0.235 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 76 AANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 76 ~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
..+++++++.++.+++.+.|+++-|=. ++|+++++ ...+-++|++.+
T Consensus 238 dYdv~kvle~aE~i~~a~idvlIaPv~--lPG~ND~E------------~~~iIe~A~~iG 284 (414)
T COG2100 238 DYDVKKVLEVAEYIANAGIDVLIAPVW--LPGVNDDE------------MPKIIEWAREIG 284 (414)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEeeee--cCCcChHH------------HHHHHHHHHHhC
Confidence 367888889998888899999999974 58888754 466888898866
No 199
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=25.08 E-value=4.3e+02 Score=23.95 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhc--CcEEEEeeeeeecCCCCceEEEEEE
Q 019580 83 SRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARES--RVWLSLGGFQEKGSDDAHLCNTHVL 160 (339)
Q Consensus 83 ~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~--~i~iv~Gs~~e~~~~~~~~yNsa~l 160 (339)
+-++.+|.=..+.|+++=|.+ .|.....- ...++.+.+++... ...|++-...| +-..-++-.++
T Consensus 179 rvLiaRALv~~P~LLiLDEP~--~GLDl~~r--------e~ll~~l~~~~~~~~~~~ll~VtHh~e---Ei~~~~th~ll 245 (257)
T COG1119 179 RVLIARALVKDPELLILDEPA--QGLDLIAR--------EQLLNRLEELAASPGAPALLFVTHHAE---EIPPCFTHRLL 245 (257)
T ss_pred HHHHHHHHhcCCCEEEecCcc--ccCChHHH--------HHHHHHHHHHhcCCCCceEEEEEcchh---hcccccceEEE
Confidence 346777777889999999974 55543210 13677888888763 23333332222 34455677777
Q ss_pred EcCCCceeeeee
Q 019580 161 VDDAGNIRSTYR 172 (339)
Q Consensus 161 i~p~G~v~~~y~ 172 (339)
+. +|+++..+.
T Consensus 246 l~-~g~v~~~g~ 256 (257)
T COG1119 246 LK-EGEVVAQGK 256 (257)
T ss_pred ee-CCceeeccc
Confidence 77 788866543
No 200
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.06 E-value=1.7e+02 Score=26.60 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=42.4
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 154 ~iAraL~~~P~llllDEPt--~gLD~~~~--------~~l~~~l~~l~~~~g~tvi~vt-Hd~~-~~~~~~drv~~l~-~ 220 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPT--AGLDPKGR--------DEILNKIKELHKEYNMTIILVS-HSME-DVAKLADRIIVMN-K 220 (287)
T ss_pred HHHHHHHcCCCEEEEECCc--cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-C
Confidence 3445556678888888863 44433211 1366677888777677776643 2221 1123557777776 7
Q ss_pred Ccee
Q 019580 165 GNIR 168 (339)
Q Consensus 165 G~v~ 168 (339)
|+++
T Consensus 221 G~i~ 224 (287)
T PRK13637 221 GKCE 224 (287)
T ss_pred CEEE
Confidence 8875
No 201
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.00 E-value=1.8e+02 Score=26.38 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=42.4
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 152 laraL~~~p~lLilDEPt--~gLD~~~~--------~~l~~~l~~l~~~~g~tillvs-H~~~-~~~~~~dri~~l~-~G 218 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPT--AGLDPMGV--------SEIMKLLVEMQKELGLTIIIAT-HDID-IVPLYCDNVFVMK-EG 218 (283)
T ss_pred HHHHHHcCCCEEEEeCCc--cCCCHHHH--------HHHHHHHHHHHHhCCCEEEEEe-cCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999963 45543221 1356678888877677776642 2221 1123456777776 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 219 ~i~ 221 (283)
T PRK13636 219 RVI 221 (283)
T ss_pred EEE
Confidence 774
No 202
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=24.81 E-value=1.7e+02 Score=27.83 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=45.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|...+++++++=|.+ .+...... ....+.|.++.++.++.+++-+ +... +-..+.+..++++ +
T Consensus 146 alArAL~~~P~llLLDEP~--s~LD~~~r--------~~l~~~L~~l~~~~g~tii~vT-Hd~~-ea~~~~Dri~vl~-~ 212 (353)
T PRK10851 146 ALARALAVEPQILLLDEPF--GALDAQVR--------KELRRWLRQLHEELKFTSVFVT-HDQE-EAMEVADRVVVMS-Q 212 (353)
T ss_pred HHHHHHhcCCCEEEEeCCC--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-C
Confidence 3445666789999999963 45443211 1366778888888788777532 2221 1234567778887 8
Q ss_pred Cceeee
Q 019580 165 GNIRST 170 (339)
Q Consensus 165 G~v~~~ 170 (339)
|+++..
T Consensus 213 G~i~~~ 218 (353)
T PRK10851 213 GNIEQA 218 (353)
T ss_pred CEEEEE
Confidence 887544
No 203
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=24.62 E-value=2.1e+02 Score=25.74 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ..+.+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 154 laral~~~p~lllLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tiiivs-H~~~-~~~~~~d~v~~l~-~G 220 (269)
T PRK11831 154 LARAIALEPDLIMFDEPF--VGQDPITM--------GVLVKLISELNSALGVTCVVVS-HDVP-EVLSIADHAYIVA-DK 220 (269)
T ss_pred HHHHHhcCCCEEEEcCCC--ccCCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-cCHH-HHHHhhCEEEEEE-CC
Confidence 445556689999999963 45443221 1356677777776566666532 2211 1123456677776 78
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 221 ~i~~ 224 (269)
T PRK11831 221 KIVA 224 (269)
T ss_pred EEEE
Confidence 7753
No 204
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=24.55 E-value=2e+02 Score=23.59 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|...+++++++=|.+ .+...... ....+.+++++++ +..+++-+ +... .-....+..+++. +
T Consensus 92 ~laral~~~p~illlDEP~--~~LD~~~~--------~~l~~~l~~~~~~-~~tiii~s-h~~~-~~~~~~d~~~~l~-~ 157 (163)
T cd03216 92 EIARALARNARLLILDEPT--AALTPAEV--------ERLFKVIRRLRAQ-GVAVIFIS-HRLD-EVFEIADRVTVLR-D 157 (163)
T ss_pred HHHHHHhcCCCEEEEECCC--cCCCHHHH--------HHHHHHHHHHHHC-CCEEEEEe-CCHH-HHHHhCCEEEEEE-C
Confidence 3445666789999999964 45443221 1355667777654 55555432 2211 1123456777776 7
Q ss_pred Ccee
Q 019580 165 GNIR 168 (339)
Q Consensus 165 G~v~ 168 (339)
|+++
T Consensus 158 g~i~ 161 (163)
T cd03216 158 GRVV 161 (163)
T ss_pred CEEE
Confidence 7764
No 205
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.34 E-value=1.6e+02 Score=27.28 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHCCCe-EEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhc-CcEEEE
Q 019580 77 ANFATSSRLVKEAASAGAK-LLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARES-RVWLSL 141 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gad-lIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~-~i~iv~ 141 (339)
.+++...++++.|.+.|+| ++|.|-.+ ..... .+..+.++++|+.. ++.|++
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~y--~~~~~-----------~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPMW--LPLDV-----------DTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCcC--CCCCH-----------HHHHHHHHHHHHhCCCCcEEE
Confidence 4567788888899999998 56666542 11111 24677888888887 588875
No 206
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=24.12 E-value=2.4e+02 Score=27.03 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=38.4
Q ss_pred EEeeccCcchHHHHHHHhcCCceEEEEeCCCC-------------------CCCcHHHHHHHHHH----HHHhcCcEEEE
Q 019580 211 PTVCYDLRFPELYQQLRFQHEAQVLLVPSAFT-------------------KVTGQAHWEILLRA----RAIETQCYVIA 267 (339)
Q Consensus 211 v~IC~D~~~pe~~r~~~~~~gadlll~ps~~~-------------------~~~~~~~~~~~~~~----rA~en~~~vv~ 267 (339)
++|| |...++...+++ ..+.+|+|...-. +..++.+|...++. +|.|+|+||+.
T Consensus 66 i~i~-D~~n~~Sl~ema--k~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVs 142 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMA--KQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVS 142 (423)
T ss_pred EEEe-cCCCHHHHHHHH--hhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEe
Confidence 4444 777888888887 4589999764321 12234566655543 59999999997
Q ss_pred ECCccCC
Q 019580 268 AAQAGKH 274 (339)
Q Consensus 268 an~~G~~ 274 (339)
| .|.+
T Consensus 143 a--CGfD 147 (423)
T KOG2733|consen 143 A--CGFD 147 (423)
T ss_pred e--cccC
Confidence 6 4543
No 207
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.09 E-value=3.3e+02 Score=26.65 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 78 NFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 78 n~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
+.+.+++.+++|.+. ++++|+++-....+|... +.+.++.+.++|+++++.+|.-
T Consensus 183 ~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~----------s~e~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 183 TPQALEAAYQEAEAANIRVRGVLITNPSNPLGATV----------QRSVLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred CHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCccc----------CHHHHHHHHHHHHHCCCEEEEe
Confidence 456667777666554 457777754333444332 2357888999999999999853
No 208
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.88 E-value=1.8e+02 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 78 NFATSSRLVKEAASAGAKLL-CLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 78 n~~~~~~~i~~A~~~gadlI-VfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+++...++++.|.+.|+|-+ |.|-.+ ..... .+..+.++++|...++.|++
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~--~~~s~-----------~~l~~y~~~ia~~~~~pi~i 132 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYY--FKPSQ-----------EELIDYFRAIADATDLPIII 132 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTS--SSCCH-----------HHHHHHHHHHHHHSSSEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEecccc--ccchh-----------hHHHHHHHHHHhhcCCCEEE
Confidence 46667777788888999954 454432 11211 24778899999888999985
No 209
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.81 E-value=1e+02 Score=27.78 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
|.+|..+++++|+==|.. ....+.. ....++.|++++++.|+++++. .+... --.++....+-+. +|
T Consensus 158 IARaL~Q~pkiILADEPv--asLDp~~--------a~~Vm~~l~~in~~~g~Tvi~n-LH~vd-lA~~Y~~Riigl~-~G 224 (258)
T COG3638 158 IARALVQQPKIILADEPV--ASLDPES--------AKKVMDILKDINQEDGITVIVN-LHQVD-LAKKYADRIIGLK-AG 224 (258)
T ss_pred HHHHHhcCCCEEecCCcc--cccChhh--------HHHHHHHHHHHHHHcCCEEEEE-echHH-HHHHHHhhheEec-CC
Confidence 456667789999998863 2222221 2248889999999999999986 55542 1235566666666 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 225 ~iv 227 (258)
T COG3638 225 RIV 227 (258)
T ss_pred cEE
Confidence 775
No 210
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=23.71 E-value=1.7e+02 Score=26.62 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcc---hhh----hhccCC--chHHHHHHHHHHhcCcEEEEeeeeee
Q 019580 77 ANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGD---SLK----VAETLD--GPIMQGYCSLARESRVWLSLGGFQEK 147 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~---~~~----~a~~~~--~~~~~~l~~~A~~~~i~iv~Gs~~e~ 147 (339)
+-++++.+.+++..+. .++-+.|= |+......+. ..+ +.+.+. .-..+.+++.|+++.+|-..|.-.+
T Consensus 157 dELeKm~~~Vd~i~~~-~~~~~~Pl-FIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~- 233 (280)
T KOG2792|consen 157 DELEKMSAVVDEIEAK-PGLPPVPL-FISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDE- 233 (280)
T ss_pred HHHHHHHHHHHHHhcc-CCCCccce-EEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCC-
Confidence 6688888888876544 33322254 3222322222 112 222221 2356889999999999998772211
Q ss_pred cCCCCceE---EEEEEEcCCCceeeeeeecc
Q 019580 148 GSDDAHLC---NTHVLVDDAGNIRSTYRKMH 175 (339)
Q Consensus 148 ~~~~~~~y---Nsa~li~p~G~v~~~y~K~~ 175 (339)
+.+-+- --.++++|+|+.+..|-+.+
T Consensus 234 --~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 234 --DQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred --CCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 222222 23468999999877666554
No 211
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=23.71 E-value=1.9e+02 Score=25.74 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=40.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++ +..|++-+ +... .-..+.+..++++ +|
T Consensus 163 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~l~~~-g~tiiivs-H~~~-~~~~~~d~i~~l~-~G 228 (257)
T PRK10619 163 IARALAMEPEVLLFDEPT--SALDPELV--------GEVLRIMQQLAEE-GKTMVVVT-HEMG-FARHVSSHVIFLH-QG 228 (257)
T ss_pred HHHHHhcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHhc-CCEEEEEe-CCHH-HHHHhcCEEEEEE-CC
Confidence 445556789999999963 45443221 1255566666654 66666532 2221 1123457777777 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 229 ~i~~ 232 (257)
T PRK10619 229 KIEE 232 (257)
T ss_pred EEEE
Confidence 8753
No 212
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=23.36 E-value=1.9e+02 Score=31.79 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 83 SRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 83 ~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
.+.+.++.++|--++||||... +.. .+ ..+...-+..+|++.++.|+--
T Consensus 501 ~~~~~~~l~~g~~~~ifPeGt~-~~~--~~--------~~~~~~g~~~~a~~~~~~i~pv 549 (1146)
T PRK08633 501 LEFIRKALDDGEVVCIFPEGAI-TRN--GQ--------LNEFKRGFELIVKGTDVPIIPF 549 (1146)
T ss_pred HHHHHHHHhCCCEEEEECCcCC-CCC--CC--------ccchhHHHHHHHHHCCCCEEEE
Confidence 3444466677889999999952 211 11 1135566888899999998753
No 213
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.24 E-value=1.5e+02 Score=28.01 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCC----CCC-----C------CCcc---hhhhhccCCchHHHHHHHHHHh
Q 019580 73 NDLAANFATSSRLVKEAASAGAKLLCLPENFS----YVG-----D------KDGD---SLKVAETLDGPIMQGYCSLARE 134 (339)
Q Consensus 73 ~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~----~~g-----~------~~~~---~~~~a~~~~~~~~~~l~~~A~~ 134 (339)
.|...+++...++|+.|++.|||.|=|.=... ... | .... ..+. ..++.+.++.|.+.|++
T Consensus 9 ~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~e~~~~L~~~~~~ 87 (329)
T TIGR03569 9 VNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKK-LELSEEDHRELKEYCES 87 (329)
T ss_pred CCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 46667899999999999999999987754310 000 1 0001 1111 23567899999999999
Q ss_pred cCcEEEEe
Q 019580 135 SRVWLSLG 142 (339)
Q Consensus 135 ~~i~iv~G 142 (339)
.|+.++.-
T Consensus 88 ~Gi~~~st 95 (329)
T TIGR03569 88 KGIEFLST 95 (329)
T ss_pred hCCcEEEE
Confidence 99999764
No 214
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=23.19 E-value=2.1e+02 Score=25.79 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=23.1
Q ss_pred EEeeccCcchHHHHHHHhcCCceEEEEeCCC
Q 019580 211 PTVCYDLRFPELYQQLRFQHEAQVLLVPSAF 241 (339)
Q Consensus 211 v~IC~D~~~pe~~r~~~~~~gadlll~ps~~ 241 (339)
+.+..-+..++..+.+. ..|||.+++-|+.
T Consensus 201 i~vgfGI~~~e~~~~~~-~~GADgvVvGSai 230 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAI-DAGADGVIVGSAI 230 (256)
T ss_pred EEEeCCCCCHHHHHHHH-HcCCCEEEECHHH
Confidence 44455567799999888 7899999987654
No 215
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=23.14 E-value=1.4e+02 Score=28.75 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 77 ANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 77 ~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
..++++.+.+++. ..+.-|++|||..-.+ .. ......++|++.|+.++-.
T Consensus 157 ~~l~~~l~~lk~~-~~~~~LvIFPEGTR~t---~~------------~~~~s~~~A~k~glPil~~ 206 (374)
T PLN02510 157 PNIRQMLSSFKDP-RDPLWLALFPEGTDYT---EA------------KCQRSQKFAAEHGLPILNN 206 (374)
T ss_pred HHHHHHHHHHhcc-CCCcEEEEeCCcCCCC---cc------------ccchHHHHHHHcCCCccee
Confidence 3444444444331 2235699999985321 11 1234668888888887654
No 216
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.13 E-value=2.4e+02 Score=21.12 Aligned_cols=45 Identities=13% Similarity=0.086 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCcee
Q 019580 123 PIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIR 168 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~ 168 (339)
+-++.+.+..++.|+.++.+...... ....-..++++.||+|..+
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~-~~~~~~~~~~~~DPdG~~i 120 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFE-GQPGEQETFFLKDPSGNAL 120 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceecc-CCcCceeEEEEECCCCCEE
Confidence 56777888888889888654221111 1112246788999999875
No 217
>PRK08960 hypothetical protein; Provisional
Probab=23.04 E-value=2.2e+02 Score=27.02 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=27.1
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.++..+|+++-....+|...+ .+.+..+.++|+++++.++.
T Consensus 163 ~~~~~~i~i~~p~NPtG~~~~----------~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 163 NADTVGALVASPANPTGTLLS----------RDELAALSQALRARGGHLVV 203 (387)
T ss_pred CccceEEEEECCCCCCCcCcC----------HHHHHHHHHHHHHcCCEEEE
Confidence 445677776554344554432 24678899999999998864
No 218
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.99 E-value=1.3e+02 Score=25.30 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=51.5
Q ss_pred EEEEEEecC--cCCH-HHHHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCCc-chhhhhccCC------chHHHHHHH
Q 019580 63 RVAVAQMTS--INDL-AANFATSSRLVKEAASAG--AKLLCLPENFSYVGDKDG-DSLKVAETLD------GPIMQGYCS 130 (339)
Q Consensus 63 rVA~vQ~~~--~~d~-~~n~~~~~~~i~~A~~~g--adlIVfPE~~~~~g~~~~-~~~~~a~~~~------~~~~~~l~~ 130 (339)
|+.++.+-. ..++ ...+.++.++.++..+++ +++|..-= -+....+ .+.+++..+. .-..+.+.+
T Consensus 53 k~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv---DP~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~ 129 (174)
T PF02630_consen 53 KWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV---DPERDTPEVLKKYAKKFGPDFIGLTGSREEIEE 129 (174)
T ss_dssp SEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES---STTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHH
T ss_pred CeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe---CCCCCCHHHHHHHHHhcCCCcceeEeCHHHHHH
Confidence 566666653 3454 344555555555555444 44443210 1111111 2333333221 123456888
Q ss_pred HHHhcCcEEEEeeeeeecCCCCce---EEEEEEEcCCCceeeeee
Q 019580 131 LARESRVWLSLGGFQEKGSDDAHL---CNTHVLVDDAGNIRSTYR 172 (339)
Q Consensus 131 ~A~~~~i~iv~Gs~~e~~~~~~~~---yNsa~li~p~G~v~~~y~ 172 (339)
+++.+++...-. ..+.. +++.. -+..++++|+|+++..|.
T Consensus 130 l~~~~~v~~~~~-~~~~~-~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 130 LAKQFGVYYEKV-PEDKP-EGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHCTHCEEEE-ESSST-TSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHhhhccc-ccccC-CCCceEecccEEEEEcCCCcEEEEEc
Confidence 898988876543 11111 22222 246789999999987774
No 219
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=22.91 E-value=3e+02 Score=24.85 Aligned_cols=69 Identities=7% Similarity=0.079 Sum_probs=40.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-. ..+..++++ +|
T Consensus 155 laral~~~p~llllDEPt--~gLD~~~~--------~~l~~~l~~l~~~~g~tillvt-H~~~-~~~-~~d~v~~l~-~G 220 (280)
T PRK13633 155 IAGILAMRPECIIFDEPT--AMLDPSGR--------REVVNTIKELNKKYGITIILIT-HYME-EAV-EADRIIVMD-SG 220 (280)
T ss_pred HHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cChH-HHh-cCCEEEEEE-CC
Confidence 345556678999999963 45443321 1356677788776677766542 2221 112 256667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 221 ~i~ 223 (280)
T PRK13633 221 KVV 223 (280)
T ss_pred EEE
Confidence 764
No 220
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=22.89 E-value=2.2e+02 Score=27.02 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=27.1
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+++++|+++-....+|...+ .+.++.+.++|++++++||.
T Consensus 164 ~~~k~i~l~~p~NPtG~~~s----------~~~~~~l~~~a~~~~~~ii~ 203 (393)
T TIGR03538 164 RRCQLLFVCSPGNPTGAVLS----------LDTLKKLIELADQYGFIIAS 203 (393)
T ss_pred hcceEEEEeCCCCCcCcccC----------HHHHHHHHHHHHHCCEEEEE
Confidence 46788887643334454332 24678899999999998874
No 221
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=22.89 E-value=2.8e+02 Score=23.75 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.++.++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 139 laral~~~p~llllDEPt--~~LD~~~~--------~~~~~~l~~~~~~~~~tii~vs-h~~~-~~~~~~d~v~~l~-~g 205 (213)
T TIGR01277 139 LARCLVRPNPILLLDEPF--SALDPLLR--------EEMLALVKQLCSERQRTLLMVT-HHLS-DARAIASQIAVVS-QG 205 (213)
T ss_pred HHHHHhcCCCEEEEcCCC--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHhhcCeEEEEE-CC
Confidence 334555678999999963 44433221 1356677777776666666532 2221 1123456667776 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 206 ~i~ 208 (213)
T TIGR01277 206 KIK 208 (213)
T ss_pred eEE
Confidence 764
No 222
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=22.83 E-value=2.2e+02 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=41.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.+++++.+..+++-+ +... .-....+..+++. +
T Consensus 158 ~laral~~~p~vlllDEP~--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~vs-H~~~-~~~~~~d~~~~l~-~ 224 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPT--GGLDVSVQ--------ARLLDLLRGLVRDLGLAVIIVT-HDLG-VARLLAQRLLVMQ-Q 224 (253)
T ss_pred HHHHHHhcCCCEEEEcCCC--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhcCEEEEEE-C
Confidence 4455666789999999964 44433221 1355667777776677776632 2221 1112445666666 7
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 225 G~i~~ 229 (253)
T TIGR02323 225 GRVVE 229 (253)
T ss_pred CEEEE
Confidence 87753
No 223
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=22.83 E-value=2e+02 Score=27.97 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeee
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQ 145 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~ 145 (339)
+.+..+..++|++=---..+|.- +.++.+++|.++|+++++.||.-.+.
T Consensus 166 e~~~t~kTk~Ii~ntPhNPtGkv----------fsReeLe~ia~l~~k~~~lvisDevY 214 (420)
T KOG0257|consen 166 ESKITEKTKAIILNTPHNPTGKV----------FSREELERIAELCKKHGLLVISDEVY 214 (420)
T ss_pred HhhccCCccEEEEeCCCCCcCcc----------cCHHHHHHHHHHHHHCCEEEEEhhHh
Confidence 34444566776653222233432 34578999999999999888754433
No 224
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=22.82 E-value=1.9e+02 Score=27.17 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 82 SSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 82 ~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
+.+.++++......+|+.+.....+|... .++.+.++|+++++.+++=
T Consensus 152 l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-------------~~~~i~~l~~~~~~~li~D 199 (385)
T TIGR01825 152 LDRVLRENPSYGKKLIVTDGVFSMDGDVA-------------PLPEIVELAERYGAVTYVD 199 (385)
T ss_pred HHHHHHhhccCCCeEEEEecCCcCCCCcc-------------CHHHHHHHHHHhCCEEEEE
Confidence 44444444334567888776433334221 2467999999999988753
No 225
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=22.81 E-value=2.3e+02 Score=25.23 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 163 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tvii~t-H~~~-~~~~~~d~i~~l~-~g 229 (262)
T PRK09984 163 IARALMQQAKVILADEPI--ASLDPESA--------RIVMDTLRDINQNDGITVVVTL-HQVD-YALRYCERIVALR-QG 229 (262)
T ss_pred HHHHHhcCCCEEEecCcc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556789999999963 45544321 1356677787766566666532 2221 1123456677776 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 230 ~i~ 232 (262)
T PRK09984 230 HVF 232 (262)
T ss_pred EEE
Confidence 764
No 226
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.71 E-value=3.2e+02 Score=24.03 Aligned_cols=56 Identities=7% Similarity=-0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeee
Q 019580 79 FATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQ 145 (339)
Q Consensus 79 ~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~ 145 (339)
.+.+.+.++++++ ++|+||.==- .|..... .+.+....+.+...+.++-+|+|+-.
T Consensus 159 ~~~i~~~i~~lr~-~~D~vIv~~H---~G~e~~~-------~p~~~~~~~A~~l~~~G~DvIiG~H~ 214 (239)
T smart00854 159 REKILADIARARK-KADVVIVSLH---WGVEYQY-------EPTDEQRELAHALIDAGADVVIGHHP 214 (239)
T ss_pred HHHHHHHHHHHhc-cCCEEEEEec---CccccCC-------CCCHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5667777877765 6998754221 2322111 12233334444443468999998643
No 227
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=22.69 E-value=1.7e+02 Score=27.59 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=44.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .|..+..- ....+.+.+++++ +..|++-+ +... +-..+.+..++++ +|
T Consensus 183 lA~aL~~~P~lLiLDEPt--~gLD~~~r--------~~l~~~l~~l~~~-g~tilisS-H~l~-e~~~~~d~i~il~-~G 248 (340)
T PRK13536 183 LARALINDPQLLILDEPT--TGLDPHAR--------HLIWERLRSLLAR-GKTILLTT-HFME-EAERLCDRLCVLE-AG 248 (340)
T ss_pred HHHHHhcCCCEEEEECCC--CCCCHHHH--------HHHHHHHHHHHhC-CCEEEEEC-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556789999999963 56544321 1356667777654 67776643 2221 2235667788887 88
Q ss_pred ceeeee
Q 019580 166 NIRSTY 171 (339)
Q Consensus 166 ~v~~~y 171 (339)
+++..-
T Consensus 249 ~i~~~g 254 (340)
T PRK13536 249 RKIAEG 254 (340)
T ss_pred EEEEEc
Confidence 886443
No 228
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.54 E-value=2e+02 Score=26.15 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.++.++.+..|++-+ +... .-....+..++++ +|
T Consensus 156 laraL~~~p~illlDEPt--~~LD~~~~--------~~l~~~l~~l~~~~g~tvl~vt-H~~~-~~~~~~dri~~l~-~G 222 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPT--AGLDPQSK--------RQVMRLLKSLQTDENKTIILVS-HDMN-EVARYADEVIVMK-EG 222 (286)
T ss_pred HHHHHHhCCCEEEEECCc--ccCCHHHH--------HHHHHHHHHHHHhCCCEEEEEe-cCHH-HHHHhCCEEEEEE-CC
Confidence 445556678999999863 44443221 1356667777776677777632 2221 1123456777776 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 223 ~i~~~ 227 (286)
T PRK13646 223 SIVSQ 227 (286)
T ss_pred EEEEE
Confidence 87543
No 229
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=22.49 E-value=2.8e+02 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEeC
Q 019580 74 DLAANFATSSRLVKEAASAGAKLLCLP 100 (339)
Q Consensus 74 d~~~n~~~~~~~i~~A~~~gadlIVfP 100 (339)
-....+..+.++.++..+.++++|.+.
T Consensus 43 ~C~~~~~~l~~~~~~~~~~~v~vi~vs 69 (149)
T cd03018 43 VCTKELCALRDSLELFEAAGAEVLGIS 69 (149)
T ss_pred cHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 344566666677777667788887775
No 230
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=22.44 E-value=2.6e+02 Score=26.61 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=38.6
Q ss_pred cceEEEeeccCcchHHHH-------HHHhcCCceEEEEeCCCCCCCcHHHH-HHHHHHHHHhcCcEEEEEC
Q 019580 207 GRLGPTVCYDLRFPELYQ-------QLRFQHEAQVLLVPSAFTKVTGQAHW-EILLRARAIETQCYVIAAA 269 (339)
Q Consensus 207 ~kigv~IC~D~~~pe~~r-------~~~~~~gadlll~ps~~~~~~~~~~~-~~~~~~rA~en~~~vv~an 269 (339)
-=++.+||-|..|.|... .+..+..+|+++.--++... .+..- -.++....-+.+++++.+=
T Consensus 49 eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnag-rYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 49 EIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAG-RYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred EEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCc-hHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 347999999998865432 23347889999985444332 23221 2345555667888888653
No 231
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=22.36 E-value=3e+02 Score=23.13 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=41.2
Q ss_pred cEEEEEEecCc-----CCHHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcC
Q 019580 62 VRVAVAQMTSI-----NDLAANFATSSRLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESR 136 (339)
Q Consensus 62 ~rVA~vQ~~~~-----~d~~~n~~~~~~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~ 136 (339)
-.+.+++...- .+.++..+.+.++++++.+.++++++++-.. ...+.. . .....-+.++++|++++
T Consensus 72 pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~~-P~~~~~-~-------~~~~~~~~~~~~a~~~~ 142 (191)
T PRK10528 72 PRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIRL-PANYGR-R-------YNEAFSAIYPKLAKEFD 142 (191)
T ss_pred CCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeec-CCcccH-H-------HHHHHHHHHHHHHHHhC
Confidence 36777777641 3456666777777777777788888763211 111111 1 11124456788999998
Q ss_pred cEEE
Q 019580 137 VWLS 140 (339)
Q Consensus 137 i~iv 140 (339)
+..+
T Consensus 143 v~~i 146 (191)
T PRK10528 143 IPLL 146 (191)
T ss_pred CCcc
Confidence 7764
No 232
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=22.27 E-value=2.9e+02 Score=23.74 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=38.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-.. .+..++++ +|
T Consensus 152 laral~~~p~illlDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~t-H~~~-~~~~-~d~v~~l~-~G 217 (221)
T TIGR02211 152 IARALVNQPSLVLADEPT--GNLDNNNA--------KIIFDLMLELNRELNTSFLVVT-HDLE-LAKK-LDRVLEMK-DG 217 (221)
T ss_pred HHHHHhCCCCEEEEeCCC--CcCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHhh-cCEEEEEe-CC
Confidence 334555678999999963 44433221 1355667777766566666532 2221 1122 46667776 67
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 218 ~i~ 220 (221)
T TIGR02211 218 QLF 220 (221)
T ss_pred Eec
Confidence 653
No 233
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.25 E-value=2e+02 Score=26.01 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++ +..|++-+ +... .-..+.+..++++ +|
T Consensus 149 laraL~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~-g~tili~t-H~~~-~~~~~~d~i~~l~-~G 214 (274)
T PRK13647 149 IAGVLAMDPDVIVLDEPM--AYLDPRGQ--------ETLMEILDRLHNQ-GKTVIVAT-HDVD-LAAEWADQVIVLK-EG 214 (274)
T ss_pred HHHHHHcCCCEEEEECCC--cCCCHHHH--------HHHHHHHHHHHHC-CCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999963 45443221 1356667777765 67776542 2221 1124567777776 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 215 ~i~ 217 (274)
T PRK13647 215 RVL 217 (274)
T ss_pred EEE
Confidence 774
No 234
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=22.20 E-value=1.7e+02 Score=28.35 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=44.7
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|..++++++++=|.+ .+...... .++++.|+++++ .+..|++- .+... .-.++.+..++++ +
T Consensus 149 ~IArAL~~~P~iLLLDEPt--sgLD~~~~--------~~l~~lL~~l~~-~g~TIIiv-sHdl~-~~~~~adrii~l~-~ 214 (402)
T PRK09536 149 LLARALAQATPVLLLDEPT--ASLDINHQ--------VRTLELVRRLVD-DGKTAVAA-IHDLD-LAARYCDELVLLA-D 214 (402)
T ss_pred HHHHHHHcCCCEEEEECCc--ccCCHHHH--------HHHHHHHHHHHh-cCCEEEEE-ECCHH-HHHHhCCEEEEEE-C
Confidence 4556777889999999963 45443221 136677888876 46677663 33331 2235567888887 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 215 G~iv~ 219 (402)
T PRK09536 215 GRVRA 219 (402)
T ss_pred CEEEE
Confidence 87753
No 235
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=22.19 E-value=3.7e+02 Score=23.78 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=73.2
Q ss_pred ceeEEecccccccceeeeeeecCCCCCcceeeeccccccchHHhccCcccEEEEEEecCcCCHHHH---HHHHH------
Q 019580 13 LGKIRSSSTHQQHHKHILAKRCGSTSSNSVSVKSRAGELDSVIMAGASSVRVAVAQMTSINDLAAN---FATSS------ 83 (339)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVA~vQ~~~~~d~~~n---~~~~~------ 83 (339)
-|++.+-+..-.+-|-.-=++-|=.|.-++....|...+.- +++..+=..+......+. ++.++
T Consensus 58 ~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~d-------Ni~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~ 130 (243)
T COG1137 58 SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVED-------NIMAVLEIREKDLKKAERKEELDALLEEFHIT 130 (243)
T ss_pred CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHH-------HHHHHHhhhhcchhHHHHHHHHHHHHHHhchH
Confidence 36777777777777766666677777766665555544331 222222111111110011 11111
Q ss_pred -----------------HHHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeee
Q 019580 84 -----------------RLVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQE 146 (339)
Q Consensus 84 -----------------~~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e 146 (339)
--+.+|...++.++++-|.| .|..+-.. ..++.+-...++.|+-|++--...
T Consensus 131 hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPF--AGVDPiaV---------~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 131 HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPF--AGVDPIAV---------IDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCc--cCCCchhH---------HHHHHHHHHHHhCCceEEEccccH
Confidence 12445666789999999974 56655321 123344444445588776542111
Q ss_pred ecCCCCceEEEEEEEcCCCceeee
Q 019580 147 KGSDDAHLCNTHVLVDDAGNIRST 170 (339)
Q Consensus 147 ~~~~~~~~yNsa~li~p~G~v~~~ 170 (339)
+ +--.+.+.++++. +|+++..
T Consensus 200 R--EtL~i~dRaYIi~-~G~vla~ 220 (243)
T COG1137 200 R--ETLDICDRAYIIS-DGKVLAE 220 (243)
T ss_pred H--HHHhhhheEEEEe-cCeEEec
Confidence 1 2235778899997 8987543
No 236
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=22.14 E-value=2.1e+02 Score=25.38 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=41.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 151 laral~~~p~lLlLDEPt--~~LD~~~~--------~~l~~~L~~~~~~~g~til~~s-H~~~-~~~~~~d~v~~l~-~G 217 (254)
T PRK10418 151 IALALLCEAPFIIADEPT--TDLDVVAQ--------ARILDLLESIVQKRALGMLLVT-HDMG-VVARLADDVAVMS-HG 217 (254)
T ss_pred HHHHHhcCCCEEEEeCCC--cccCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-cCHH-HHHHhCCEEEEEE-CC
Confidence 445666789999999964 44433211 1356777888777677776543 2211 1123446677776 88
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 218 ~i~ 220 (254)
T PRK10418 218 RIV 220 (254)
T ss_pred EEE
Confidence 774
No 237
>PRK05957 aspartate aminotransferase; Provisional
Probab=22.09 E-value=2.2e+02 Score=27.01 Aligned_cols=40 Identities=5% Similarity=0.025 Sum_probs=26.0
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.++++|+++-....+|...+ .+.++.+.++|+++++.++.
T Consensus 159 ~~~klv~~~~p~NPtG~~~~----------~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 159 PKTRAIVTISPNNPTGVVYP----------EALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred cCceEEEEeCCCCCCCcCcC----------HHHHHHHHHHHHHcCcEEEE
Confidence 35677776543333444322 24678899999999998874
No 238
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=22.06 E-value=1.8e+02 Score=26.83 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=42.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|.-.+++++++=|.+ .|..+... ....+.+.++++ .+..|++-+ +... +-..+.+..++++ +|
T Consensus 149 la~aL~~~P~lllLDEPt--~gLD~~~~--------~~l~~~l~~l~~-~g~till~s-H~l~-e~~~~~d~i~il~-~G 214 (306)
T PRK13537 149 LARALVNDPDVLVLDEPT--TGLDPQAR--------HLMWERLRSLLA-RGKTILLTT-HFME-EAERLCDRLCVIE-EG 214 (306)
T ss_pred HHHHHhCCCCEEEEeCCC--cCCCHHHH--------HHHHHHHHHHHh-CCCEEEEEC-CCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999963 56544321 135566777754 477777643 2221 2234557777777 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 215 ~i~~~ 219 (306)
T PRK13537 215 RKIAE 219 (306)
T ss_pred EEEEE
Confidence 87543
No 239
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.02 E-value=1.5e+02 Score=25.74 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=30.0
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeee
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGF 144 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~ 144 (339)
.+++|.+.|+++||-|-.. ..+.+.|+++++..+-|..
T Consensus 68 ~a~~ai~aGA~FivSP~~~----------------------~~vi~~a~~~~i~~iPG~~ 105 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGTT----------------------QELLAAANDSDVPLLPGAA 105 (201)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEeCCCC
Confidence 4567778899999988642 3478889999999998854
No 240
>PLN02231 alanine transaminase
Probab=22.01 E-value=2.7e+02 Score=28.12 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 78 NFATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 78 n~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
+++.+++.++.+..+ ++++|+++=--..+|... ..+.++.|.++|++++++|+.
T Consensus 254 d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vl----------s~e~l~~Iv~~a~~~~l~lI~ 309 (534)
T PLN02231 254 EISELKKQLEDARSKGITVRALVVINPGNPTGQVL----------AEENQRDIVEFCKQEGLVLLA 309 (534)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCC----------CHHHHHHHHHHHHHcCCEEEE
Confidence 455666666655444 467777753223445433 235788899999999999875
No 241
>PLN00175 aminotransferase family protein; Provisional
Probab=21.97 E-value=2.4e+02 Score=27.20 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=26.2
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..++++|+++-....+|... +.+.++.+.++|++++++|+.
T Consensus 185 ~~~~k~i~i~~p~NPtG~~~----------s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 185 TSKTRAILINTPHNPTGKMF----------TREELELIASLCKENDVLAFT 225 (413)
T ss_pred CcCceEEEecCCCCCCCcCC----------CHHHHHHHHHHHHHcCcEEEE
Confidence 34577777653323344332 224678899999999998874
No 242
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=21.96 E-value=3e+02 Score=27.41 Aligned_cols=66 Identities=14% Similarity=0.197 Sum_probs=37.4
Q ss_pred cCCceEEEEeCCC-CCC--CcHHHHHHHHHHHHHhcCcEEEEECCccCCC-CCCCcceeeEEECCCCCeee
Q 019580 229 QHEAQVLLVPSAF-TKV--TGQAHWEILLRARAIETQCYVIAAAQAGKHN-DKRESYGDSLIIDPWGTVIG 295 (339)
Q Consensus 229 ~~gadlll~ps~~-~~~--~~~~~~~~~~~~rA~en~~~vv~an~~G~~~-~~~~~~G~S~Ii~p~G~ii~ 295 (339)
++|+|+++.|-.. +.. .............|.+++++++.....-.++ ++..++-...+++| |+++.
T Consensus 255 ~~~~dlvV~PE~a~p~~~~~~~~~~~~~l~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~ 324 (505)
T PRK00302 255 LGPADLIIWPETAIPFLLEDLPQAFLKALDDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILN 324 (505)
T ss_pred cCCCCEEEeCCcccccccccccHHHHHHHHHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcC
Confidence 4689999999543 211 1122233346667889999998765432211 11134445667888 76543
No 243
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=21.94 E-value=1.9e+02 Score=24.20 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=27.3
Q ss_pred EEEEEEecCcCCHHHHHHHHHHHHHHHHHC-C-CeEEEeCCCC
Q 019580 63 RVAVAQMTSINDLAANFATSSRLVKEAASA-G-AKLLCLPENF 103 (339)
Q Consensus 63 rVA~vQ~~~~~d~~~n~~~~~~~i~~A~~~-g-adlIVfPE~~ 103 (339)
||+++|+..++|.+.- .++-+-|-+|++. . -+|++.|-..
T Consensus 1 Kv~ivQ~pYlGd~~a~-r~mGerIGRaaQ~FEV~eLiiap~~~ 42 (173)
T PF14419_consen 1 KVVIVQMPYLGDLKAC-RKMGERIGRAAQAFEVKELIIAPKEK 42 (173)
T ss_pred CeeEEeccccCCHHHH-HHHHHHHhHHHhhcchheEEEeccCc
Confidence 6899999999988654 4444445555442 3 4889988763
No 244
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=21.90 E-value=3.3e+02 Score=21.14 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=12.7
Q ss_pred EEEEEEcCCCceeeee
Q 019580 156 NTHVLVDDAGNIRSTY 171 (339)
Q Consensus 156 Nsa~li~p~G~v~~~y 171 (339)
-++++++++|+++..|
T Consensus 111 p~~~lid~~G~v~~~~ 126 (140)
T cd03017 111 RSTFLIDPDGKIVKVW 126 (140)
T ss_pred eeEEEECCCCEEEEEE
Confidence 4689999999886654
No 245
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=21.82 E-value=2.2e+02 Score=25.48 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 158 laral~~~p~lllLDEPt--~~LD~~~~--------~~~~~~l~~l~~~~~~tiii~s-H~~~-~i~~~~d~i~~l~-~G 224 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPT--SALDIAHQ--------VDVLALVHRLSQERGLTVIAVL-HDIN-MAARYCDYLVALR-GG 224 (265)
T ss_pred HHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556789999999963 45443221 1356677777776566666532 2221 1123456677776 78
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 225 ~i~~ 228 (265)
T PRK10575 225 EMIA 228 (265)
T ss_pred eEEE
Confidence 7753
No 246
>PLN02368 alanine transaminase
Probab=21.77 E-value=3.7e+02 Score=25.99 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHC--CCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 79 FATSSRLVKEAASA--GAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 79 ~~~~~~~i~~A~~~--gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
++.+++.++.+..+ ++++|++.--...+|...+ .+.++.+.++|++++++||.
T Consensus 194 ~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s----------~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 194 VNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLS----------EANLREILKFCYQERLVLLG 248 (407)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCC----------HHHHHHHHHHHHHcCCEEEE
Confidence 44555555443222 4675555332345565432 35788899999999999874
No 247
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.76 E-value=2e+02 Score=26.79 Aligned_cols=72 Identities=10% Similarity=0.127 Sum_probs=43.7
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.++.++.+..+++-+ +... +-..+.+..++++ +|
T Consensus 111 laraL~~~p~lllLDEP~--s~LD~~~~--------~~l~~~l~~l~~~~g~tiiivT-Hd~~-e~~~~~d~i~vl~-~G 177 (325)
T TIGR01187 111 LARALVFKPKILLLDEPL--SALDKKLR--------DQMQLELKTIQEQLGITFVFVT-HDQE-EAMTMSDRIAIMR-KG 177 (325)
T ss_pred HHHHHHhCCCEEEEeCCC--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445566789999999964 44433211 1356677888877777776532 2221 1124556777877 89
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 178 ~i~~~ 182 (325)
T TIGR01187 178 KIAQI 182 (325)
T ss_pred EEEEE
Confidence 87544
No 248
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=21.73 E-value=2.3e+02 Score=26.83 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..+++-+ +... +-..+.+..+++. +|
T Consensus 142 lAraL~~~p~lllLDEPt--s~LD~~~~--------~~l~~~L~~l~~~~g~tiiivt-H~~~-~~~~~~d~i~~l~-~G 208 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPL--AALDDPRK--------YEILPYLERLHAEFGIPILYVS-HSLQ-EVLRLADRVVVLE-DG 208 (354)
T ss_pred HHHHHHcCCCEEEEcCCC--cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HHHHhCCEEEEEe-CC
Confidence 344555678999999963 44433221 1366778888877677666542 2221 1123456777776 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 209 ~i~~~ 213 (354)
T TIGR02142 209 RVAAA 213 (354)
T ss_pred EEEEE
Confidence 87644
No 249
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.62 E-value=2.4e+02 Score=24.66 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++++++=|.+ .+...... ....+.+.+++.+.+..+++-+ +... .-..+....++++ +
T Consensus 139 ~laral~~~p~llllDEPt--~gLD~~~~--------~~l~~~l~~~~~~~~~tili~t-H~~~-~~~~~~d~i~~l~-~ 205 (235)
T cd03299 139 AIARALVVNPKILLLDEPF--SALDVRTK--------EKLREELKKIRKEFGVTVLHVT-HDFE-EAWALADKVAIML-N 205 (235)
T ss_pred HHHHHHHcCCCEEEECCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HHHHhCCEEEEEE-C
Confidence 3445556788999998863 45443321 1255667777766677776643 2221 1123445666776 7
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 206 G~i~~ 210 (235)
T cd03299 206 GKLIQ 210 (235)
T ss_pred CEEEE
Confidence 87753
No 250
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=21.60 E-value=2.6e+02 Score=26.62 Aligned_cols=40 Identities=13% Similarity=-0.051 Sum_probs=27.7
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
.++++|+++-....+|... +.+.++.+.++|++++++||.
T Consensus 165 ~~~k~i~l~nP~NPTG~~~----------s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 165 ARTQLLFVCSPGNPTGAVL----------PLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred hccEEEEEcCCCCCcCccC----------CHHHHHHHHHHHHHcCeEEEe
Confidence 4788988863333444432 235778899999999998874
No 251
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.60 E-value=2.3e+02 Score=25.82 Aligned_cols=70 Identities=10% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 161 laral~~~p~lLlLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tiiiis-H~~~-~~~~~~d~i~~l~-~G 227 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPT--GGLDPKGE--------EDFINLFERLNKEYKKRIIMVT-HNMD-QVLRIADEVIVMH-EG 227 (289)
T ss_pred HHHHHHhCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HHHHhCCEEEEEE-CC
Confidence 345555678999999963 45443221 1355667777776676666532 2221 1124556777776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 228 ~i~ 230 (289)
T PRK13645 228 KVI 230 (289)
T ss_pred EEE
Confidence 764
No 252
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=21.59 E-value=2e+02 Score=26.85 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=26.6
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
+++++|+++-....+|... -++.|.++|+++++++++-
T Consensus 138 ~~~~~v~~~~~~~~tG~~~-------------~~~~i~~~~~~~~~~li~D 175 (373)
T cd06453 138 ERTKLVAVTHVSNVLGTIN-------------PVKEIGEIAHEAGVPVLVD 175 (373)
T ss_pred CCceEEEEeCcccccCCcC-------------CHHHHHHHHHHcCCEEEEE
Confidence 4788888866543455432 2467999999999988764
No 253
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=21.52 E-value=2.3e+02 Score=26.79 Aligned_cols=78 Identities=14% Similarity=0.136 Sum_probs=45.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.+++++.+..+++-+ +... +-..+.+..++++ +|
T Consensus 139 laraL~~~p~llLLDEPt--s~LD~~~~--------~~l~~~L~~l~~~~g~tii~vT-Hd~~-~~~~~~d~i~~l~-~G 205 (352)
T PRK11144 139 IGRALLTAPELLLMDEPL--ASLDLPRK--------RELLPYLERLAREINIPILYVS-HSLD-EILRLADRVVVLE-QG 205 (352)
T ss_pred HHHHHHcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCeEEEEe-cCHH-HHHHhCCEEEEEe-CC
Confidence 445566788999999963 44433211 1356778888877777776532 2221 1224456777777 88
Q ss_pred ceeeeeeeccc
Q 019580 166 NIRSTYRKMHL 176 (339)
Q Consensus 166 ~v~~~y~K~~L 176 (339)
+++..-....+
T Consensus 206 ~i~~~g~~~~i 216 (352)
T PRK11144 206 KVKAFGPLEEV 216 (352)
T ss_pred EEEEecCHHHH
Confidence 87644333333
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=21.37 E-value=2.7e+02 Score=23.11 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=40.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.++.++.+..+++-+ +... .-....+..+++. +|
T Consensus 108 laral~~~p~llllDEP~--~~LD~~~~--------~~~~~~l~~~~~~~~~tiii~s-h~~~-~~~~~~d~~~~l~-~g 174 (180)
T cd03214 108 LARALAQEPPILLLDEPT--SHLDIAHQ--------IELLELLRRLARERGKTVVMVL-HDLN-LAARYADRVILLK-DG 174 (180)
T ss_pred HHHHHhcCCCEEEEeCCc--cCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445666789999999964 45443221 1255667777665466665532 2221 1124557777776 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 175 ~i~ 177 (180)
T cd03214 175 RIV 177 (180)
T ss_pred EEE
Confidence 663
No 255
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=21.36 E-value=2e+02 Score=26.92 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|...+++||++=|.+ ++..... ...+.+.|.++.++.++.|++-+ +... .-..+.+..+++. +
T Consensus 168 ~iArAL~~~P~llilDEPt--s~LD~~~--------~~~i~~lL~~l~~~~g~tii~it-Hdl~-~v~~~~dri~vm~-~ 234 (330)
T PRK15093 168 MIAIALANQPRLLIADEPT--NAMEPTT--------QAQIFRLLTRLNQNNNTTILLIS-HDLQ-MLSQWADKINVLY-C 234 (330)
T ss_pred HHHHHHHCCCCEEEEeCCC--CcCCHHH--------HHHHHHHHHHHHHhcCCEEEEEE-CCHH-HHHHhCCEEEEEE-C
Confidence 3556666789999999963 4443221 12467778888877788777643 2211 1123456666776 7
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 235 G~ive 239 (330)
T PRK15093 235 GQTVE 239 (330)
T ss_pred CEEEE
Confidence 87753
No 256
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.35 E-value=2.3e+02 Score=24.69 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=40.8
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|...+++++++=|.+ .|...... ....+.+++++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 140 ~laral~~~p~llllDEP~--~gLD~~~~--------~~l~~~l~~~~~~~~~tiii~s-h~~~-~~~~~~d~i~~l~-~ 206 (232)
T cd03300 140 AIARALVNEPKVLLLDEPL--GALDLKLR--------KDMQLELKRLQKELGITFVFVT-HDQE-EALTMSDRIAVMN-K 206 (232)
T ss_pred HHHHHHhcCCCEEEEcCCc--ccCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhcCEEEEEE-C
Confidence 3445666789999999963 45443221 1355667777776676666532 2221 1123446667776 7
Q ss_pred Ccee
Q 019580 165 GNIR 168 (339)
Q Consensus 165 G~v~ 168 (339)
|++.
T Consensus 207 G~~~ 210 (232)
T cd03300 207 GKIQ 210 (232)
T ss_pred CEEE
Confidence 8763
No 257
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=21.28 E-value=2.3e+02 Score=25.41 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=40.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.|.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 144 laraL~~~p~lllLDEPt--~~LD~~~~--------~~l~~~L~~~~~~~~~tviivs-Hd~~-~~~~~~d~i~~l~-~G 210 (257)
T PRK11247 144 LARALIHRPGLLLLDEPL--GALDALTR--------IEMQDLIESLWQQHGFTVLLVT-HDVS-EAVAMADRVLLIE-EG 210 (257)
T ss_pred HHHHHhcCCCEEEEeCCC--CCCCHHHH--------HHHHHHHHHHHHHcCCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 344555678999999963 44433221 1355667777776666666532 2221 1123456677776 78
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 211 ~i~~ 214 (257)
T PRK11247 211 KIGL 214 (257)
T ss_pred EEEe
Confidence 7743
No 258
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=21.27 E-value=2.3e+02 Score=24.66 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=39.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++ +..|++-+ +... .-..+.+..+++. +|
T Consensus 153 laral~~~p~llllDEP~--~gLD~~~~--------~~~~~~l~~~~~~-~~tiii~s-H~~~-~~~~~~d~i~~l~-~G 218 (224)
T cd03220 153 FAIATALEPDILLIDEVL--AVGDAAFQ--------EKCQRRLRELLKQ-GKTVILVS-HDPS-SIKRLCDRALVLE-KG 218 (224)
T ss_pred HHHHHhcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHhC-CCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 445666789999999964 45443221 1356677777765 55565532 2221 1123446667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 219 ~i~ 221 (224)
T cd03220 219 KIR 221 (224)
T ss_pred EEE
Confidence 763
No 259
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.11 E-value=4.1e+02 Score=23.77 Aligned_cols=69 Identities=6% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .- ...+..+++. +|
T Consensus 153 laral~~~p~lllLDEPt--~~LD~~~~--------~~l~~~L~~~~~~~~~tiiivt-H~~~-~~-~~~d~i~~l~-~G 218 (269)
T PRK13648 153 IAGVLALNPSVIILDEAT--SMLDPDAR--------QNLLDLVRKVKSEHNITIISIT-HDLS-EA-MEADHVIVMN-KG 218 (269)
T ss_pred HHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCch-HH-hcCCEEEEEE-CC
Confidence 445556688999999963 44443221 1255667777766566665532 2221 11 2256666776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 219 ~i~ 221 (269)
T PRK13648 219 TVY 221 (269)
T ss_pred EEE
Confidence 775
No 260
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.97 E-value=2.7e+02 Score=25.24 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=42.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .- ...+..+++. +|
T Consensus 154 laral~~~P~llllDEPt--~gLD~~~~--------~~l~~~l~~l~~~~g~tvli~t-H~~~-~~-~~~d~i~~l~-~G 219 (282)
T PRK13640 154 IAGILAVEPKIIILDEST--SMLDPAGK--------EQILKLIRKLKKKNNLTVISIT-HDID-EA-NMADQVLVLD-DG 219 (282)
T ss_pred HHHHHHcCCCEEEEECCc--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HH-HhCCEEEEEE-CC
Confidence 445666789999999964 45443221 1356777888776676666543 2221 11 2456667776 88
Q ss_pred ceee
Q 019580 166 NIRS 169 (339)
Q Consensus 166 ~v~~ 169 (339)
+++.
T Consensus 220 ~i~~ 223 (282)
T PRK13640 220 KLLA 223 (282)
T ss_pred EEEE
Confidence 7753
No 261
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=20.96 E-value=2.3e+02 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEe
Q 019580 92 AGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLG 142 (339)
Q Consensus 92 ~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 142 (339)
.++++|+++-....+|...+ .+.++.|.++|++++++||.-
T Consensus 141 ~~~k~v~l~~p~NPTG~~~~----------~~~~~~i~~~a~~~~~~ii~D 181 (356)
T PRK08056 141 PDLDCLFLCTPNNPTGLLPE----------RQLLQAIAERCKSLNIALILD 181 (356)
T ss_pred CCCCEEEEeCCcCCCCCCCC----------HHHHHHHHHHHHhcCCEEEEe
Confidence 56677777544444554332 246788999999999988753
No 262
>PHA01633 putative glycosyl transferase group 1
Probab=20.85 E-value=2.8e+02 Score=26.16 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=30.9
Q ss_pred hHHHHHHHhcCCceEEEEeCCCCCCCcHHHHHHHHHHHHHhcCcEEEEECCccC
Q 019580 220 PELYQQLRFQHEAQVLLVPSAFTKVTGQAHWEILLRARAIETQCYVIAAAQAGK 273 (339)
Q Consensus 220 pe~~r~~~~~~gadlll~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~ 273 (339)
.++...++ .+|+++.||.+.... +...-|...|++|+.++..|.
T Consensus 215 ~dl~~~y~---~aDifV~PS~~EgfG-------lvlLEAMA~G~PVVas~~~~l 258 (335)
T PHA01633 215 EYIFAFYG---AMDFTIVPSGTEGFG-------MPVLESMAMGTPVIHQLMPPL 258 (335)
T ss_pred HHHHHHHH---hCCEEEECCccccCC-------HHHHHHHHcCCCEEEccCCCc
Confidence 34555543 689999998753322 345668889999999888765
No 263
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.79 E-value=2.7e+02 Score=24.84 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC-
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA- 164 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~- 164 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +
T Consensus 161 laral~~~p~vllLDEP~--~~LD~~~~--------~~l~~~l~~l~~~~~~tiiivs-H~~~-~i~~~~d~i~~l~-~~ 227 (261)
T PRK14258 161 IARALAVKPKVLLMDEPC--FGLDPIAS--------MKVESLIQSLRLRSELTMVIVS-HNLH-QVSRLSDFTAFFK-GN 227 (261)
T ss_pred HHHHHhcCCCEEEEeCCC--ccCCHHHH--------HHHHHHHHHHHHhCCCEEEEEE-CCHH-HHHHhcCEEEEEc-cC
Confidence 344555688999999963 44433221 1355667777665566665532 2221 2235667888887 5
Q ss_pred ----Cceee
Q 019580 165 ----GNIRS 169 (339)
Q Consensus 165 ----G~v~~ 169 (339)
|+++.
T Consensus 228 ~~~~G~i~~ 236 (261)
T PRK14258 228 ENRIGQLVE 236 (261)
T ss_pred CCcCceEEE
Confidence 77653
No 264
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.73 E-value=2.1e+02 Score=26.28 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+..|.-.+++++++=|.+ .|..+... ....+.+.+++++ +..|++-+ +... +-..+.+..+++. +
T Consensus 134 ~la~al~~~p~lllLDEPt--~gLD~~~~--------~~l~~~l~~~~~~-g~tvi~~s-H~~~-~~~~~~d~v~~l~-~ 199 (302)
T TIGR01188 134 DIAASLIHQPDVLFLDEPT--TGLDPRTR--------RAIWDYIRALKEE-GVTILLTT-HYME-EADKLCDRIAIID-H 199 (302)
T ss_pred HHHHHHhcCCCEEEEeCCC--cCCCHHHH--------HHHHHHHHHHHhC-CCEEEEEC-CCHH-HHHHhCCEEEEEE-C
Confidence 3445666789999999963 55544321 1355667777654 66776643 2221 2224556777776 8
Q ss_pred Cceee
Q 019580 165 GNIRS 169 (339)
Q Consensus 165 G~v~~ 169 (339)
|+++.
T Consensus 200 G~i~~ 204 (302)
T TIGR01188 200 GRIIA 204 (302)
T ss_pred CEEEE
Confidence 88754
No 265
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.64 E-value=2.1e+02 Score=25.73 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=41.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++.+..+++-+ +... .-..+.+..+++. +|
T Consensus 162 laral~~~p~lllLDEPt--~~LD~~~~--------~~~~~~l~~~~~~~~~tiiivs-H~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 162 LARALAVEPKLLILDEAV--SNLDLVLQ--------AGVIRLLKKLQQQFGTACLFIT-HDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred HHHHHhcCCCEEEEeCCC--cccCHHHH--------HHHHHHHHHHHHHcCcEEEEEE-CCHH-HHHHhCCEEEEEE-CC
Confidence 445556678999998863 34432211 1366778888777677666532 2221 1123557777776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 229 ~i~ 231 (268)
T PRK10419 229 QIV 231 (268)
T ss_pred EEe
Confidence 764
No 266
>PRK12414 putative aminotransferase; Provisional
Probab=20.61 E-value=2.5e+02 Score=26.63 Aligned_cols=41 Identities=5% Similarity=0.081 Sum_probs=26.4
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..++++|+++-....+|...+ .+.++.|.++|++++++|+.
T Consensus 160 ~~~~~~v~i~~p~NPTG~~~s----------~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 160 TPRTRMIIVNTPHNPSATVFS----------AADLARLAQLTRNTDIVILS 200 (384)
T ss_pred CcccEEEEEcCCCCCCCcCCC----------HHHHHHHHHHHHHCCeEEEE
Confidence 346788877533334454322 23567788999999988874
No 267
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.48 E-value=1.8e+02 Score=25.35 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=29.3
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeee
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGF 144 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~ 144 (339)
.++.|.+.|+++||-|-.. ..+.+.|+++++..+-|..
T Consensus 72 ~a~~a~~aGA~FivsP~~~----------------------~~v~~~~~~~~i~~iPG~~ 109 (204)
T TIGR01182 72 QLRQAVDAGAQFIVSPGLT----------------------PELAKHAQDHGIPIIPGVA 109 (204)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCcEECCCC
Confidence 4566777899999888642 2478889999999998853
No 268
>PRK06348 aspartate aminotransferase; Provisional
Probab=20.47 E-value=2.6e+02 Score=26.48 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=26.0
Q ss_pred HCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEE
Q 019580 91 SAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSL 141 (339)
Q Consensus 91 ~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~ 141 (339)
..++++|+++-....+|...+ .+.++.|.++|+++++.|+.
T Consensus 160 ~~~~~~v~l~~p~NPtG~~~s----------~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 160 TSKTKAIILNSPNNPTGAVFS----------KETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred CcCccEEEEeCCCCCCCcCCC----------HHHHHHHHHHHHHCCeEEEE
Confidence 345677776532223443322 24678899999999998874
No 269
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.42 E-value=2.8e+02 Score=24.92 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ....+.+.+++++.+..|++-+ +... .-..+.+..+++. +|
T Consensus 171 lAral~~~p~illLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tiii~t-H~~~-~~~~~~d~v~~l~-~G 237 (269)
T cd03294 171 LARALAVDPDILLMDEAF--SALDPLIR--------REMQDELLRLQAELQKTIVFIT-HDLD-EALRLGDRIAIMK-DG 237 (269)
T ss_pred HHHHHhcCCCEEEEcCCC--ccCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-CCHH-HHHHhcCEEEEEE-CC
Confidence 445556789999999964 45443221 1356667777766566666532 2221 1123456667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 238 ~i~ 240 (269)
T cd03294 238 RLV 240 (269)
T ss_pred EEE
Confidence 774
No 270
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=20.41 E-value=2.6e+02 Score=24.36 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=39.1
Q ss_pred HHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCc
Q 019580 87 KEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGN 166 (339)
Q Consensus 87 ~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~ 166 (339)
..|...+++++++=|.+ .+...... ....+.+.+++++ +..|++-+ +... +-..+.+..+++. +|+
T Consensus 149 a~al~~~p~illlDEPt--~~LD~~~~--------~~l~~~l~~~~~~-~~tiii~s-H~~~-~~~~~~d~i~~l~-~G~ 214 (237)
T PRK11614 149 GRALMSQPRLLLLDEPS--LGLAPIII--------QQIFDTIEQLREQ-GMTIFLVE-QNAN-QALKLADRGYVLE-NGH 214 (237)
T ss_pred HHHHHhCCCEEEEcCcc--ccCCHHHH--------HHHHHHHHHHHHC-CCEEEEEe-CcHH-HHHhhCCEEEEEe-CCE
Confidence 34445679999999963 45443221 1355667777654 56665532 2221 1234567777887 787
Q ss_pred ee
Q 019580 167 IR 168 (339)
Q Consensus 167 v~ 168 (339)
++
T Consensus 215 i~ 216 (237)
T PRK11614 215 VV 216 (237)
T ss_pred EE
Confidence 74
No 271
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=20.39 E-value=2.8e+02 Score=24.83 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=42.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.|.++.++.+..|++-+ +... .-..+.+..++++ +|
T Consensus 161 laral~~~p~illLDEPt--~~LD~~~~--------~~l~~~l~~~~~~~g~tiiivs-H~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAV--SNLDMVLQ--------AVILELLRKLQQAFGTAYLFIT-HDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred HHHHHhcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHhcCcEEEEEe-CCHH-HHHHHhcEEEEEe-CC
Confidence 445556788999998863 44433211 1356777888776566666532 2221 1123556777776 88
Q ss_pred ceeee
Q 019580 166 NIRST 170 (339)
Q Consensus 166 ~v~~~ 170 (339)
+++..
T Consensus 228 ~i~~~ 232 (265)
T TIGR02769 228 QIVEE 232 (265)
T ss_pred EEEEE
Confidence 77543
No 272
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=20.37 E-value=2.7e+02 Score=20.71 Aligned_cols=45 Identities=9% Similarity=-0.070 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCCceeee
Q 019580 123 PIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAGNIRST 170 (339)
Q Consensus 123 ~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G~v~~~ 170 (339)
+.++.+.+.+++.|+.++.+ .... ....-...+.+.||+|..+..
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~-~~~~--~~~~~~~~~~~~DP~G~~iel 114 (120)
T cd08362 70 ADVDALARQVAARGGTVLSE-PGAT--DDPGGGYGFRFFDPDGRLIEF 114 (120)
T ss_pred HHHHHHHHHHHHcCCceecC-Cccc--CCCCCceEEEEECCCCCEEEE
Confidence 45667777777889987643 2111 111123467899999987644
No 273
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=20.31 E-value=2.9e+02 Score=23.85 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=38.8
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++++++=|.+ .+...... ..+.+.+.+++++.+..|++-+ +... .- ...+..+++. +|
T Consensus 157 la~al~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~~~~tii~~s-H~~~-~~-~~~d~i~~l~-~g 222 (228)
T PRK10584 157 LARAFNGRPDVLFADEPT--GNLDRQTG--------DKIADLLFSLNREHGTTLILVT-HDLQ-LA-ARCDRRLRLV-NG 222 (228)
T ss_pred HHHHHhcCCCEEEEeCCC--CCCCHHHH--------HHHHHHHHHHHHhcCCEEEEEe-cCHH-HH-HhCCEEEEEE-CC
Confidence 345555678999999963 45443221 1356677788777666666533 2221 11 2245556665 77
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 223 ~i~ 225 (228)
T PRK10584 223 QLQ 225 (228)
T ss_pred EEE
Confidence 653
No 274
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.22 E-value=2.1e+02 Score=24.33 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+.+|...+++++++=|.+ .+...... ....+.+.+++++ +..|++-+ +... +-..+.+..+++. +|
T Consensus 137 laral~~~p~llllDEPt--~~LD~~~~--------~~l~~~l~~~~~~-~~tii~~s-H~~~-~~~~~~d~i~~l~-~G 202 (205)
T cd03226 137 IAAALLSGKDLLIFDEPT--SGLDYKNM--------ERVGELIRELAAQ-GKAVIVIT-HDYE-FLAKVCDRVLLLA-NG 202 (205)
T ss_pred HHHHHHhCCCEEEEeCCC--ccCCHHHH--------HHHHHHHHHHHHC-CCEEEEEe-CCHH-HHHHhCCEEEEEE-CC
Confidence 345555688999999963 44443211 1355666776654 55565532 2221 1123456666775 67
Q ss_pred ce
Q 019580 166 NI 167 (339)
Q Consensus 166 ~v 167 (339)
++
T Consensus 203 ~i 204 (205)
T cd03226 203 AI 204 (205)
T ss_pred EE
Confidence 65
No 275
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.18 E-value=5.4e+02 Score=23.36 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=44.6
Q ss_pred HHHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCC
Q 019580 85 LVKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDA 164 (339)
Q Consensus 85 ~i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~ 164 (339)
.+.+|..-+++||.+=|- ++|..+-.. +.+.+.++++-+..+.++++=+ +... .--..-+..+++. +
T Consensus 155 aLARAialdPell~~DEP--tsGLDPI~a--------~~~~~LI~~L~~~lg~T~i~VT-HDl~-s~~~i~Drv~~L~-~ 221 (263)
T COG1127 155 ALARAIALDPELLFLDEP--TSGLDPISA--------GVIDELIRELNDALGLTVIMVT-HDLD-SLLTIADRVAVLA-D 221 (263)
T ss_pred HHHHHHhcCCCEEEecCC--CCCCCcchH--------HHHHHHHHHHHHhhCCEEEEEE-CChH-HHHhhhceEEEEe-C
Confidence 455777889999999996 467765332 1245567777777888887632 2221 1112334455554 7
Q ss_pred Cceeeeee
Q 019580 165 GNIRSTYR 172 (339)
Q Consensus 165 G~v~~~y~ 172 (339)
|+++..=.
T Consensus 222 gkv~~~Gt 229 (263)
T COG1127 222 GKVIAEGT 229 (263)
T ss_pred CEEEEeCC
Confidence 77654433
No 276
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.09 E-value=3e+02 Score=24.95 Aligned_cols=69 Identities=7% Similarity=0.083 Sum_probs=41.1
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCCcchhhhhccCCchHHHHHHHHHHhcCcEEEEeeeeeecCCCCceEEEEEEEcCCC
Q 019580 86 VKEAASAGAKLLCLPENFSYVGDKDGDSLKVAETLDGPIMQGYCSLARESRVWLSLGGFQEKGSDDAHLCNTHVLVDDAG 165 (339)
Q Consensus 86 i~~A~~~gadlIVfPE~~~~~g~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~Gs~~e~~~~~~~~yNsa~li~p~G 165 (339)
+..|...+++||++=|.+ .|...... ..+.+.|.+++++.+..|++-+. ... .- ...+..+++. +|
T Consensus 151 laral~~~p~lllLDEPt--~gLD~~~~--------~~l~~~l~~l~~~~~~tilivsH-~~~-~~-~~~d~i~~l~-~G 216 (279)
T PRK13635 151 IAGVLALQPDIIILDEAT--SMLDPRGR--------REVLETVRQLKEQKGITVLSITH-DLD-EA-AQADRVIVMN-KG 216 (279)
T ss_pred HHHHHHcCCCEEEEeCCc--ccCCHHHH--------HHHHHHHHHHHHcCCCEEEEEec-CHH-HH-HcCCEEEEEE-CC
Confidence 345556789999999963 45443221 13667788888776777765432 221 11 2356667776 78
Q ss_pred cee
Q 019580 166 NIR 168 (339)
Q Consensus 166 ~v~ 168 (339)
+++
T Consensus 217 ~i~ 219 (279)
T PRK13635 217 EIL 219 (279)
T ss_pred EEE
Confidence 764
Done!