Query 019584
Match_columns 338
No_of_seqs 504 out of 3285
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2E-26 4.4E-31 241.7 20.0 210 37-267 27-256 (968)
2 PLN03150 hypothetical protein; 99.9 8.6E-21 1.9E-25 188.9 17.9 167 33-265 366-533 (623)
3 PLN00113 leucine-rich repeat r 99.8 7.9E-21 1.7E-25 199.6 14.0 164 92-266 404-590 (968)
4 KOG0617 Ras suppressor protein 99.7 2.9E-20 6.2E-25 150.0 -4.8 160 90-264 31-190 (264)
5 KOG0617 Ras suppressor protein 99.6 1E-16 2.2E-21 129.6 -2.4 138 113-264 28-166 (264)
6 KOG4194 Membrane glycoprotein 99.6 4E-15 8.8E-20 140.1 6.0 157 92-260 78-234 (873)
7 KOG0444 Cytoskeletal regulator 99.6 3.7E-16 7.9E-21 148.1 -1.1 153 93-260 127-304 (1255)
8 KOG4194 Membrane glycoprotein 99.5 4.4E-15 9.4E-20 139.9 4.6 159 93-262 174-332 (873)
9 KOG0444 Cytoskeletal regulator 99.5 8E-16 1.7E-20 145.8 -3.2 155 91-260 221-375 (1255)
10 KOG0472 Leucine-rich repeat pr 99.5 2.7E-15 5.8E-20 135.7 -0.1 152 93-260 389-541 (565)
11 KOG4237 Extracellular matrix p 99.5 2.7E-14 5.9E-19 128.9 4.7 63 91-156 66-129 (498)
12 PLN03150 hypothetical protein; 99.5 2.6E-13 5.7E-18 135.5 10.5 93 168-268 419-511 (623)
13 cd00116 LRR_RI Leucine-rich re 99.4 2.5E-13 5.5E-18 124.8 4.0 164 91-260 80-263 (319)
14 PRK15387 E3 ubiquitin-protein 99.3 2.1E-12 4.5E-17 129.8 8.9 105 144-266 343-464 (788)
15 cd00116 LRR_RI Leucine-rich re 99.3 6.9E-13 1.5E-17 121.9 4.7 163 92-261 51-235 (319)
16 KOG0472 Leucine-rich repeat pr 99.3 2.2E-14 4.8E-19 129.8 -6.2 158 93-260 138-310 (565)
17 PRK15370 E3 ubiquitin-protein 99.3 6.2E-11 1.4E-15 119.7 16.0 143 93-264 179-341 (754)
18 PRK15370 E3 ubiquitin-protein 99.2 1.9E-11 4.1E-16 123.4 9.2 145 92-265 199-363 (754)
19 PLN03210 Resistant to P. syrin 99.2 6.1E-11 1.3E-15 126.5 12.9 59 199-258 778-836 (1153)
20 PLN03210 Resistant to P. syrin 99.2 8.3E-11 1.8E-15 125.5 13.1 160 92-266 611-821 (1153)
21 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.8E-16 101.5 5.8 126 114-254 15-147 (175)
22 KOG0532 Leucine-rich repeat (L 99.2 8.1E-13 1.8E-17 124.5 -3.2 134 113-262 116-249 (722)
23 KOG0618 Serine/threonine phosp 99.2 2.4E-12 5.1E-17 127.3 -1.1 150 93-257 360-510 (1081)
24 KOG0618 Serine/threonine phosp 99.2 2.4E-12 5.3E-17 127.2 -1.6 162 93-261 242-466 (1081)
25 PF14580 LRR_9: Leucine-rich r 99.2 2.9E-11 6.3E-16 100.8 5.0 124 92-230 19-147 (175)
26 KOG1259 Nischarin, modulator o 99.1 9.5E-12 2.1E-16 109.2 0.1 133 117-264 283-416 (490)
27 KOG4237 Extracellular matrix p 99.1 1.9E-11 4.2E-16 110.7 1.7 148 119-267 68-342 (498)
28 PRK15387 E3 ubiquitin-protein 99.1 3.6E-10 7.8E-15 113.9 10.3 53 93-156 223-275 (788)
29 COG4886 Leucine-rich repeat (L 99.1 6.9E-11 1.5E-15 112.2 4.3 165 92-265 116-295 (394)
30 KOG0532 Leucine-rich repeat (L 99.0 1E-11 2.3E-16 117.1 -4.8 152 94-265 77-228 (722)
31 COG4886 Leucine-rich repeat (L 99.0 4.1E-10 8.9E-15 106.9 5.0 123 96-234 97-220 (394)
32 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.4E-15 101.6 -0.8 128 93-237 285-413 (490)
33 KOG3207 Beta-tubulin folding c 98.9 2E-10 4.3E-15 105.5 -0.5 160 92-259 146-313 (505)
34 KOG3207 Beta-tubulin folding c 98.9 6.1E-10 1.3E-14 102.3 1.4 163 91-262 171-341 (505)
35 PF13855 LRR_8: Leucine rich r 98.8 2.1E-09 4.5E-14 73.8 2.3 60 200-259 2-61 (61)
36 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 1E-13 72.1 2.9 59 119-178 2-60 (61)
37 KOG4579 Leucine-rich repeat (L 98.7 9.4E-10 2E-14 86.2 -1.9 136 120-269 29-168 (177)
38 KOG1909 Ran GTPase-activating 98.6 2.6E-08 5.6E-13 89.4 3.2 143 114-261 88-255 (382)
39 KOG1859 Leucine-rich repeat pr 98.5 2E-09 4.3E-14 104.6 -6.6 129 119-262 165-294 (1096)
40 KOG1909 Ran GTPase-activating 98.5 4.8E-08 1E-12 87.7 2.3 117 140-260 182-311 (382)
41 KOG4579 Leucine-rich repeat (L 98.5 8.2E-09 1.8E-13 81.0 -2.5 139 93-244 28-167 (177)
42 PF08263 LRRNT_2: Leucine rich 98.5 2.6E-07 5.7E-12 58.4 4.3 42 38-88 2-43 (43)
43 KOG4658 Apoptotic ATPase [Sign 98.3 7.7E-07 1.7E-11 91.8 5.3 107 92-210 545-653 (889)
44 KOG1859 Leucine-rich repeat pr 98.3 2.3E-08 5E-13 97.3 -5.8 126 93-236 165-292 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.3 1.1E-06 2.3E-11 90.7 5.8 148 93-254 524-675 (889)
46 KOG0531 Protein phosphatase 1, 98.3 1.9E-07 4.1E-12 89.4 0.1 149 93-261 73-222 (414)
47 KOG2120 SCF ubiquitin ligase, 98.2 6.6E-08 1.4E-12 85.2 -3.9 133 119-258 186-349 (419)
48 KOG2120 SCF ubiquitin ligase, 98.2 1.2E-07 2.7E-12 83.5 -2.9 161 92-257 185-373 (419)
49 KOG0531 Protein phosphatase 1, 98.2 2E-07 4.4E-12 89.2 -2.0 154 91-262 94-270 (414)
50 KOG2982 Uncharacterized conser 98.1 7.8E-07 1.7E-11 78.6 1.2 171 92-263 71-265 (418)
51 PF12799 LRR_4: Leucine Rich r 98.1 5E-06 1.1E-10 52.8 3.8 35 144-179 2-36 (44)
52 PF12799 LRR_4: Leucine Rich r 98.0 6.9E-06 1.5E-10 52.1 3.4 37 199-236 1-37 (44)
53 COG5238 RNA1 Ran GTPase-activa 98.0 7E-06 1.5E-10 71.8 4.0 143 114-261 88-256 (388)
54 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.5E-10 66.0 5.2 107 118-234 42-151 (233)
55 KOG3665 ZYG-1-like serine/thre 97.9 4.1E-06 8.9E-11 84.4 1.0 58 117-176 147-204 (699)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.1E-05 2.4E-10 81.3 3.7 136 118-263 122-266 (699)
57 KOG1644 U2-associated snRNP A' 97.8 3.6E-05 7.7E-10 64.6 5.3 108 93-211 43-152 (233)
58 PRK15386 type III secretion pr 97.8 0.00012 2.6E-09 68.8 9.4 72 92-179 52-124 (426)
59 PRK15386 type III secretion pr 97.7 0.0002 4.3E-09 67.4 8.5 119 114-257 48-187 (426)
60 KOG2982 Uncharacterized conser 97.5 6.9E-05 1.5E-09 66.6 3.0 165 80-253 84-285 (418)
61 KOG2739 Leucine-rich acidic nu 97.4 7.8E-05 1.7E-09 65.0 2.3 38 142-179 64-103 (260)
62 KOG2739 Leucine-rich acidic nu 97.4 8.2E-05 1.8E-09 64.8 2.1 106 139-254 39-150 (260)
63 COG5238 RNA1 Ran GTPase-activa 97.3 0.00025 5.4E-09 62.3 3.9 168 92-263 92-288 (388)
64 KOG2123 Uncharacterized conser 96.8 8.1E-05 1.8E-09 65.5 -3.7 103 92-205 19-123 (388)
65 KOG2123 Uncharacterized conser 96.7 0.00011 2.3E-09 64.8 -3.2 102 116-229 17-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.3 0.0097 2.1E-07 46.6 5.4 106 113-232 7-112 (129)
67 PF13306 LRR_5: Leucine rich r 95.8 0.05 1.1E-06 42.5 7.4 117 92-225 12-128 (129)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0048 1E-07 32.6 0.9 19 145-164 2-20 (22)
69 PF00560 LRR_1: Leucine Rich R 95.5 0.0061 1.3E-07 32.2 0.8 18 225-243 2-19 (22)
70 KOG4308 LRR-containing protein 95.4 0.00025 5.5E-09 68.6 -8.4 61 201-261 235-304 (478)
71 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 26.5 1.4 10 145-154 3-12 (17)
72 KOG0473 Leucine-rich repeat pr 93.2 0.0033 7.1E-08 54.2 -5.3 84 91-180 41-124 (326)
73 KOG4308 LRR-containing protein 91.4 0.0076 1.6E-07 58.5 -6.1 167 94-264 89-279 (478)
74 KOG0473 Leucine-rich repeat pr 90.7 0.0057 1.2E-07 52.8 -6.7 88 138-236 37-124 (326)
75 smart00369 LRR_TYP Leucine-ric 90.1 0.3 6.4E-06 26.6 2.2 14 143-156 2-15 (26)
76 smart00370 LRR Leucine-rich re 90.1 0.3 6.4E-06 26.6 2.2 14 143-156 2-15 (26)
77 smart00370 LRR Leucine-rich re 89.9 0.29 6.3E-06 26.7 2.0 14 223-236 2-15 (26)
78 smart00369 LRR_TYP Leucine-ric 89.9 0.29 6.3E-06 26.7 2.0 14 223-236 2-15 (26)
79 KOG1947 Leucine rich repeat pr 89.7 0.066 1.4E-06 51.7 -1.3 91 114-211 210-307 (482)
80 KOG1947 Leucine rich repeat pr 89.1 0.2 4.3E-06 48.4 1.6 131 117-254 187-328 (482)
81 PF13516 LRR_6: Leucine Rich r 89.0 0.083 1.8E-06 28.3 -0.6 17 223-239 2-18 (24)
82 KOG3864 Uncharacterized conser 88.4 0.082 1.8E-06 44.8 -1.4 83 144-232 102-185 (221)
83 KOG3864 Uncharacterized conser 84.5 0.16 3.5E-06 43.0 -1.6 35 93-129 102-136 (221)
84 KOG4341 F-box protein containi 82.5 0.68 1.5E-05 43.6 1.5 137 116-258 292-437 (483)
85 TIGR00864 PCC polycystin catio 80.5 1.1 2.4E-05 51.6 2.4 32 205-236 1-32 (2740)
86 KOG3763 mRNA export factor TAP 79.7 0.87 1.9E-05 44.3 1.2 87 165-261 216-313 (585)
87 smart00364 LRR_BAC Leucine-ric 74.4 2 4.3E-05 23.6 1.2 17 224-241 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 73.3 2.9 6.2E-05 23.0 1.7 13 144-156 3-15 (26)
89 KOG3763 mRNA export factor TAP 67.0 3.1 6.6E-05 40.7 1.5 66 196-263 215-286 (585)
90 smart00368 LRR_RI Leucine rich 66.7 4.8 0.0001 22.3 1.7 13 200-212 3-15 (28)
91 PF04478 Mid2: Mid2 like cell 61.3 5.3 0.00011 32.2 1.6 18 286-303 52-69 (154)
92 PF08693 SKG6: Transmembrane a 57.1 24 0.00051 21.6 3.6 19 288-306 15-33 (40)
93 KOG4341 F-box protein containi 56.4 7.8 0.00017 36.8 2.1 155 93-252 295-457 (483)
94 PF08114 PMP1_2: ATPase proteo 51.0 22 0.00047 21.7 2.7 24 288-311 10-33 (43)
95 PHA03265 envelope glycoprotein 45.5 38 0.00083 31.3 4.6 39 285-323 349-388 (402)
96 PF06667 PspB: Phage shock pro 42.8 1.2E+02 0.0026 21.4 6.2 34 16-49 16-49 (75)
97 PTZ00370 STEVOR; Provisional 37.5 22 0.00048 31.9 1.9 14 303-316 276-289 (296)
98 PF01102 Glycophorin_A: Glycop 35.6 9.2 0.0002 29.8 -0.7 17 288-304 65-81 (122)
99 PF06697 DUF1191: Protein of u 35.1 88 0.0019 28.2 5.2 32 288-319 215-250 (278)
100 TIGR01478 STEVOR variant surfa 33.5 20 0.00043 32.1 0.9 11 304-314 281-291 (295)
101 PTZ00382 Variant-specific surf 33.4 18 0.0004 26.9 0.6 7 289-295 68-74 (96)
102 PF01102 Glycophorin_A: Glycop 32.4 7.9 0.00017 30.2 -1.5 17 285-301 66-82 (122)
103 PRK09458 pspB phage shock prot 32.1 1.8E+02 0.004 20.5 5.5 33 16-48 16-48 (75)
104 smart00367 LRR_CC Leucine-rich 30.4 33 0.00072 18.3 1.2 10 144-153 3-12 (26)
105 PF04478 Mid2: Mid2 like cell 29.1 98 0.0021 25.1 4.1 22 285-306 47-68 (154)
106 PF12273 RCR: Chitin synthesis 28.1 37 0.00081 26.6 1.6 17 295-311 7-23 (130)
107 PF03672 UPF0154: Uncharacteri 27.9 44 0.00095 22.8 1.7 18 292-309 3-20 (64)
108 PF15179 Myc_target_1: Myc tar 27.0 29 0.00064 28.8 0.8 20 284-303 17-36 (197)
109 KOG4242 Predicted myosin-I-bin 26.7 1.1E+02 0.0024 29.8 4.7 34 93-126 355-388 (553)
110 PRK10132 hypothetical protein; 26.6 37 0.00079 25.9 1.2 18 292-309 90-107 (108)
111 KOG4242 Predicted myosin-I-bin 26.4 1.2E+02 0.0027 29.5 4.9 58 200-257 414-478 (553)
112 PF01034 Syndecan: Syndecan do 25.2 20 0.00044 24.3 -0.3 12 288-299 14-25 (64)
113 TIGR00864 PCC polycystin catio 24.6 47 0.001 39.2 2.1 32 173-212 1-32 (2740)
114 PF04971 Lysis_S: Lysis protei 23.9 46 0.001 22.9 1.2 23 288-310 34-56 (68)
115 PF02439 Adeno_E3_CR2: Adenovi 22.6 13 0.00028 22.4 -1.5 7 293-299 9-15 (38)
116 PF03229 Alpha_GJ: Alphavirus 22.5 1E+02 0.0023 23.6 2.9 12 305-316 106-117 (126)
117 TIGR03042 PS_II_psbQ_bact phot 22.0 1.5E+02 0.0032 23.8 3.9 39 11-49 5-43 (142)
118 PF08374 Protocadherin: Protoc 21.2 97 0.0021 26.7 2.9 7 289-295 40-46 (221)
119 PF06305 DUF1049: Protein of u 20.7 40 0.00088 22.8 0.5 13 293-305 25-37 (68)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=2e-26 Score=241.74 Aligned_cols=210 Identities=34% Similarity=0.521 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCcccc
Q 019584 37 HDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQ 116 (338)
Q Consensus 37 ~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~ 116 (338)
.++|+.||++||+.+.++.. .+.+|+ ...+||.|.|+.|+. .++|+.|||++|++.+.++. .+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~---------~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK---------YLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc---------cCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HHhC
Confidence 56899999999999864432 567897 567899999999975 36899999999999998877 8889
Q ss_pred CcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccc------------
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFY------------ 183 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~------------ 183 (338)
+++|+.|+|++|.+++. +|..+. .+++|++|+|++|.+++.+|. +.+++|++|++++|.+++..
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 99999999999999865 776554 777888888877777665553 33555556666555543100
Q ss_pred -------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584 184 -------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256 (338)
Q Consensus 184 -------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 256 (338)
+. +.+|..+.++++|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..+..+++|++|++++
T Consensus 169 L~L~~n~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 169 LDLGGNVLV---GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred EECccCccc---ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 11 23444455555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCcCCCCC
Q 019584 257 GPLSKKCNNSE 267 (338)
Q Consensus 257 N~l~~~~p~~~ 267 (338)
|.+++.+|..+
T Consensus 246 n~l~~~~p~~l 256 (968)
T PLN00113 246 NNLTGPIPSSL 256 (968)
T ss_pred ceeccccChhH
Confidence 55555555433
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.86 E-value=8.6e-21 Score=188.93 Aligned_cols=167 Identities=27% Similarity=0.379 Sum_probs=97.9
Q ss_pred CCCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCC
Q 019584 33 QPLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTS 112 (338)
Q Consensus 33 ~~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~ 112 (338)
...+.++|..||+.+|+.+..+ ...+|+.+++.+..|.|.|+.|......
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~-----------~~~~W~g~~C~p~~~~w~Gv~C~~~~~~------------------- 415 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLP-----------LRFGWNGDPCVPQQHPWSGADCQFDSTK------------------- 415 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCc-----------ccCCCCCCCCCCcccccccceeeccCCC-------------------
Confidence 4567788999999999988542 1237875544444568999999532100
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
....++.|+|++|.+.+. +|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+
T Consensus 416 ---~~~~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-------------- 477 (623)
T PLN03150 416 ---GKWFIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-------------- 477 (623)
T ss_pred ---CceEEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC--------------
Confidence 001133445555555443 55556666666666666666666666656555555555555555
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC-CCCCeeeccCCCCCCcCCC
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL-PNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~ 265 (338)
+++.+|+.++++++|++|+|++|.++|.+|..+... .++..+++.+|+..|.+|.
T Consensus 478 ------------------lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 478 ------------------FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred ------------------CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 334444455555555555555555555555554432 3456677778877666553
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=7.9e-21 Score=199.59 Aligned_cols=164 Identities=24% Similarity=0.358 Sum_probs=126.6
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcC-----------------------CCCcEE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNF-----------------------SRLTHL 148 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----------------------~~L~~L 148 (338)
++++.|++++|.+++..|. .+.+++.|+.|++++|.+++. +|..+..+ ++|++|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L 480 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNNLQGR-INSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL 480 (968)
T ss_pred CCCCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCcccCc-cChhhccCCCCcEEECcCceeeeecCcccccccceEE
Confidence 4667777777777766665 666666666666666666543 44444444 455555
Q ss_pred EcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCee
Q 019584 149 NLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228 (338)
Q Consensus 149 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 228 (338)
++++|++++.+|..+..+++|++|++++|+++ +.+|..+.++++|++|++++|.+++.+|..+..+++|+.|
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLS--------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcce--------eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 66666666666666666777777777777643 5778888999999999999999999999999999999999
Q ss_pred ecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 229 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
+|++|+++|.+|..+..+++|+.+++++|++.|.+|+.
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 99999999999999999999999999999999999853
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.9e-20 Score=150.00 Aligned_cols=160 Identities=27% Similarity=0.406 Sum_probs=146.4
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
...+++.|.|++|.++ .+|+ .+..+.+|+.|++.+|+++ ++|..++.+++|+.|+++-|++. .+|..|+.++.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vpp--nia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-ecCC--cHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3568999999999998 5566 7999999999999999997 38999999999999999999999 899999999999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
+.|||++|++.+ ..+|..|..+..|+-|++++|.+. .+|+.++++++|+.|.+.+|.+- .+|.+++.+..|
T Consensus 105 evldltynnl~e-------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~l 175 (264)
T KOG0617|consen 105 EVLDLTYNNLNE-------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRL 175 (264)
T ss_pred hhhhcccccccc-------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHH
Confidence 999999999764 578888889999999999999997 58999999999999999999998 899999999999
Q ss_pred CeeeccCCCCCCcCC
Q 019584 250 QFLGLCGGPLSKKCN 264 (338)
Q Consensus 250 ~~L~l~~N~l~~~~p 264 (338)
++|.+.+|.++--.|
T Consensus 176 relhiqgnrl~vlpp 190 (264)
T KOG0617|consen 176 RELHIQGNRLTVLPP 190 (264)
T ss_pred HHHhcccceeeecCh
Confidence 999999999986444
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=129.56 Aligned_cols=138 Identities=25% Similarity=0.423 Sum_probs=126.2
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.+.++.+++.|.|++|+++. +|+.+..+.+|+.|++++|+++ .+|.+++.++.|+.|+++-|++ ..+|
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl---------~~lp 95 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL---------NILP 95 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh---------hcCc
Confidence 56678899999999999984 7888999999999999999999 8999999999999999999996 3689
Q ss_pred hhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 193 NLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
..|+.++.|+.||+..|++.. .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+-. .|
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lp 166 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LP 166 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-Cc
Confidence 999999999999999999974 57888999999999999999999 899999999999999999998764 44
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.55 E-value=4e-15 Score=140.09 Aligned_cols=157 Identities=25% Similarity=0.252 Sum_probs=128.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
...+.||+++|.+...-+. .|.++++|+.+++.+|.++. +|.......+|+.|+|.+|.|+..-.+.+.-++.|+.
T Consensus 78 ~~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 4567899999999877666 78899999999999999973 7876666778999999999999666778888999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
||||.|.|++.. ...+..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|..+++|+.
T Consensus 154 lDLSrN~is~i~--------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 154 LDLSRNLISEIP--------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhchhhccc--------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 999999976421 234455578999999999998877788888889999999999998444456667899999
Q ss_pred eeccCCCCC
Q 019584 252 LGLCGGPLS 260 (338)
Q Consensus 252 L~l~~N~l~ 260 (338)
|+|..|.+.
T Consensus 226 LdLnrN~ir 234 (873)
T KOG4194|consen 226 LDLNRNRIR 234 (873)
T ss_pred hhcccccee
Confidence 999888765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=3.7e-16 Score=148.12 Aligned_cols=153 Identities=28% Similarity=0.353 Sum_probs=97.3
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc----------------
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS---------------- 156 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~---------------- 156 (338)
+...|+|++|+|.....+ .+.++..|-+|||++|++. .+|+.+..+.+|++|+|++|.+.
T Consensus 127 n~iVLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred CcEEEEcccCccccCCch--HHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 455666666666533222 4556777777777777764 26666666666777777666432
Q ss_pred ---------cccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584 157 ---------GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227 (338)
Q Consensus 157 ---------~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 227 (338)
..+|.++..+.+|..+|+|.|++ ..+|+.+.++++|+.|+||+|+++. +....+...+|++
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L---------p~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL---------PIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLET 272 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCC---------CcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhh
Confidence 12455555556666666666654 2456667777777777777777763 4444455566777
Q ss_pred eecccccCcccCchhccCCCCCCeeeccCCCCC
Q 019584 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 260 (338)
|++|.|+++ .+|..+.++++|+.|.+.+|.++
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 777777777 67777777777777777777665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.54 E-value=4.4e-15 Score=139.87 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=69.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
++++|+|++|.|+..-.. .|..+.+|..|.|+.|+++.. .+..|.++++|+.|+|..|+|.-.---.|.++++|+.|
T Consensus 174 ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CceEEeeccccccccccc--cccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 344444444444433322 444444444444444444432 23334445555555555444441112223333333333
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 252 (338)
.|..|.+... -...|..+.++++|+|+.|+++..--.++.++++|+.|+||+|.|...-++.+...++|+.|
T Consensus 251 klqrN~I~kL--------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 251 KLQRNDISKL--------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hhhhcCcccc--------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 3333333210 01123344455555555555544334444455555555555555554444444444555555
Q ss_pred eccCCCCCCc
Q 019584 253 GLCGGPLSKK 262 (338)
Q Consensus 253 ~l~~N~l~~~ 262 (338)
+|+.|.++.-
T Consensus 323 dLs~N~i~~l 332 (873)
T KOG4194|consen 323 DLSSNRITRL 332 (873)
T ss_pred eccccccccC
Confidence 5555555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=8e-16 Score=145.83 Aligned_cols=155 Identities=25% Similarity=0.369 Sum_probs=129.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++..+|++.|++. ..|. .+.++.+|+.|+|++|.++. +.-......+|++|+||.|+++ .+|+.++.++.|+
T Consensus 221 l~NL~dvDlS~N~Lp-~vPe--cly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPE--CLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhhhhccccccCCC-cchH--HHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 357778888888886 5556 77888888888888888874 4455666778888888888888 8888888899999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
.|.+.+|+++ + ..+|..++++.+|+.+..++|.+. ..|+.+..+..|+.|.|+.|++- .+|+++.-++.|+
T Consensus 295 kLy~n~NkL~---F----eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 295 KLYANNNKLT---F----EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred HHHhccCccc---c----cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 9888888876 4 378889999999999999999886 58899999999999999999988 7899998899999
Q ss_pred eeeccCCCCC
Q 019584 251 FLGLCGGPLS 260 (338)
Q Consensus 251 ~L~l~~N~l~ 260 (338)
.||+..|+=-
T Consensus 366 vLDlreNpnL 375 (1255)
T KOG0444|consen 366 VLDLRENPNL 375 (1255)
T ss_pred eeeccCCcCc
Confidence 9999988643
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=2.7e-15 Score=135.69 Aligned_cols=152 Identities=29% Similarity=0.449 Sum_probs=132.1
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCcc-EEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQ-RLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
-|+.++++.|++. ++|. .+..++.+. .+.+++|.++. +|..+..+++|..|+|++|.+. .+|..++.+..|+.
T Consensus 389 ~Vt~VnfskNqL~-elPk--~L~~lkelvT~l~lsnn~isf--v~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPK--RLVELKELVTDLVLSNNKISF--VPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT 462 (565)
T ss_pred ceEEEecccchHh-hhhh--hhHHHHHHHHHHHhhcCcccc--chHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence 4888999999987 4555 555555554 45667776653 7889999999999999999998 89999999999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
||++.|+| ..+|..+..+..++.+-.++|++....|+.+.++.+|..|||.+|.+. .+|..++++++|++
T Consensus 463 LnlS~NrF---------r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 463 LNLSFNRF---------RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred eccccccc---------ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 99999985 378998888889999999999998777777999999999999999999 89999999999999
Q ss_pred eeccCCCCC
Q 019584 252 LGLCGGPLS 260 (338)
Q Consensus 252 L~l~~N~l~ 260 (338)
|+++||+|.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 999999998
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=2.7e-14 Score=128.94 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=53.8
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccc-ccCc
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ-SYFS 156 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~ 156 (338)
+...++|+|..|+|+...+. .|..+++|+.|||++|.|+.. -|.+|.++.+|..|-+.+ |+|+
T Consensus 66 P~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh
Confidence 45778999999999977666 899999999999999999876 788999998887766655 8777
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=2.6e-13 Score=135.49 Aligned_cols=93 Identities=25% Similarity=0.373 Sum_probs=86.9
Q ss_pred CCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCC
Q 019584 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP 247 (338)
Q Consensus 168 ~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 247 (338)
.++.|+|++|.++ +.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++|.+|+.++.++
T Consensus 419 ~v~~L~L~~n~L~--------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLR--------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCcc--------ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 3788999999964 78899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeccCCCCCCcCCCCCC
Q 019584 248 NLQFLGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 248 ~L~~L~l~~N~l~~~~p~~~~ 268 (338)
+|+.|++++|.++|.+|....
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred CCCEEECcCCcccccCChHHh
Confidence 999999999999999997543
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=2.5e-13 Score=124.82 Aligned_cols=164 Identities=24% Similarity=0.258 Sum_probs=105.6
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcC---ccEEEccCCCCCCCC---CchhhhcC-CCCcEEEcccccCccc----c
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVH---LQRLSLFDNNFNFSE---IPSAILNF-SRLTHLNLSQSYFSGQ----I 159 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~---L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~~~----~ 159 (338)
..+++.|++++|.+.+..+. .+..+.. |+.|++++|.++... +...+..+ ++|+.|++++|.+++. +
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 35788888888887654433 4444444 888888888876321 22345566 7888888888887743 3
Q ss_pred chhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccC
Q 019584 160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRL 235 (338)
Q Consensus 160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l 235 (338)
+..+..+++|++|++++|.+++..+ ..++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGI----RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHH----HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 3445666788888888887653111 12334455567888888888877643 234455667788888888887
Q ss_pred cccCchhcc-----CCCCCCeeeccCCCCC
Q 019584 236 QGEFPQEIF-----QLPNLQFLGLCGGPLS 260 (338)
Q Consensus 236 ~~~~p~~l~-----~l~~L~~L~l~~N~l~ 260 (338)
++.....+. ..+.|+.|++++|.++
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 753332222 1367888888888776
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=2.1e-12 Score=129.84 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=72.2
Q ss_pred CCcEEEcccccCccccchhhcC-----------------CCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEc
Q 019584 144 RLTHLNLSQSYFSGQIPAELLE-----------------LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206 (338)
Q Consensus 144 ~L~~L~Ls~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~L 206 (338)
+|++|+|++|+++ .+|..... ..+|+.|++++|+++ .+|.. .++|+.|++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt---------~LP~l---~s~L~~LdL 409 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT---------SLPVL---PSELKELMV 409 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc---------CCCCc---ccCCCEEEc
Confidence 5667777777766 34432111 124555555555543 22321 356888888
Q ss_pred cCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 207 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..
T Consensus 410 S~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 410 SGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred cCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 8888875 5643 246788999999998 78999999999999999999999987753
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=6.9e-13 Score=121.93 Aligned_cols=163 Identities=24% Similarity=0.240 Sum_probs=122.6
Q ss_pred CcEEEEEeCCCCcee------ecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCC---CcEEEcccccCcc----c
Q 019584 92 GHVVELDLASSCLYG------SINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR---LTHLNLSQSYFSG----Q 158 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~------~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~ 158 (338)
+.++.++++++.+.+ .++. .+..+++|+.|++++|.+... .+..+..+.+ |++|++++|.+++ .
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQ--GLTKGCGLQELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHH--HHHhcCceeEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 468899998887762 1222 466788999999999998754 5666666655 9999999999873 2
Q ss_pred cchhhcCC-CCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccc
Q 019584 159 IPAELLEL-SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGC 233 (338)
Q Consensus 159 ~p~~l~~l-~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N 233 (338)
+...+..+ ++|+.|++++|.++.... ..++..+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASC----EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHH----HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33455667 899999999999763111 13455677888999999999999853 3344566679999999999
Q ss_pred cCccc----CchhccCCCCCCeeeccCCCCCC
Q 019584 234 RLQGE----FPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 234 ~l~~~----~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
.+++. ++..+..+++|++|++++|++++
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 98754 34456678899999999999886
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=2.2e-14 Score=129.82 Aligned_cols=158 Identities=27% Similarity=0.428 Sum_probs=96.8
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
.+..++..+|++. ..|. .+.++..|..|++.+|+++. +|+..-+++.|++||...|-++ .+|+.++.+.+|+-|
T Consensus 138 ~l~dl~~~~N~i~-slp~--~~~~~~~l~~l~~~~n~l~~--l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPE--DMVNLSKLSKLDLEGNKLKA--LPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL 211 (565)
T ss_pred hhhhhhccccccc-cCch--HHHHHHHHHHhhccccchhh--CCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence 4567777788876 4555 67778888888888888864 4555555888888888888877 788888888888888
Q ss_pred EccCCCCCccccccc-----------C---CCcchh-hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584 173 DLSYSNFDTFYLKLQ-----------K---PGLANL-AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~-----------~---~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
+|..|++...+ ++. . ..+|.. ..++++|..||+..|+++ +.|+.+..+.+|+.||+|+|.++
T Consensus 212 yL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is- 288 (565)
T KOG0472|consen 212 YLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS- 288 (565)
T ss_pred HhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-
Confidence 88888864211 000 0 012221 224455555555555554 34555555555555555555555
Q ss_pred cCchhccCCCCCCeeeccCCCCC
Q 019584 238 EFPQEIFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 238 ~~p~~l~~l~~L~~L~l~~N~l~ 260 (338)
.+|.+++++ .|+.|-+.||++.
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred cCCcccccc-eeeehhhcCCchH
Confidence 344455555 5555555555544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=6.2e-11 Score=119.70 Aligned_cols=143 Identities=23% Similarity=0.368 Sum_probs=76.1
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
+.+.|++++++++. +|. .+ .++|+.|++++|.++. +|..+. .+|++|++++|.++ .+|..+. .+|+.|
T Consensus 179 ~~~~L~L~~~~Lts-LP~--~I--p~~L~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L 246 (754)
T PRK15370 179 NKTELRLKILGLTT-IPA--CI--PEQITTLILDNNELKS--LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEM 246 (754)
T ss_pred CceEEEeCCCCcCc-CCc--cc--ccCCcEEEecCCCCCc--CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEE
Confidence 34566666666652 333 22 2456777777777652 555443 46777777777666 4555442 356666
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc---------------
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG--------------- 237 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--------------- 237 (338)
+|++|+++ .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++
T Consensus 247 ~Ls~N~L~---------~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls 312 (754)
T PRK15370 247 ELSINRIT---------ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312 (754)
T ss_pred ECcCCccC---------cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCcccchhhHHHHHhc
Confidence 66666643 2232221 245555555555552 444332 345555555555542
Q ss_pred -----cCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 238 -----EFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 238 -----~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
.+|..+ .++|+.|++++|.+++ +|
T Consensus 313 ~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP 341 (754)
T PRK15370 313 SNSLTALPETL--PPGLKTLEAGENALTS-LP 341 (754)
T ss_pred CCccccCCccc--cccceeccccCCcccc-CC
Confidence 233222 2467777777777765 44
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.9e-11 Score=123.43 Aligned_cols=145 Identities=21% Similarity=0.326 Sum_probs=94.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|+|++|.++. +|. .+ ..+|+.|++++|.++. +|..+. .+|+.|+|++|.+. .+|..+. .+|+.
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~--~l--~~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELKS-LPE--NL--QGNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCCCc-CCh--hh--ccCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--CCCCE
Confidence 468899999999884 444 33 2478888888888763 565443 35777777777776 5665543 35666
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC--------------------CCchhcccCCCCCeeecc
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS--------------------TVPHTLANLSSLRFSSLS 231 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------------~~p~~l~~l~~L~~L~Ls 231 (338)
|++++|+++. +|..+. ++|+.|++++|+++. .+|..+ .++|+.|+++
T Consensus 267 L~Ls~N~L~~---------LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls 333 (754)
T PRK15370 267 LDLFHNKISC---------LPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAG 333 (754)
T ss_pred EECcCCccCc---------cccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceecccc
Confidence 6776666532 222221 245555555555543 133222 2679999999
Q ss_pred cccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 232 GCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 232 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+|.++ .+|..+. ++|+.|++++|.++. +|.
T Consensus 334 ~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~ 363 (754)
T PRK15370 334 ENALT-SLPASLP--PELQVLDVSKNQITV-LPE 363 (754)
T ss_pred CCccc-cCChhhc--CcccEEECCCCCCCc-CCh
Confidence 99999 5777664 689999999999984 554
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.23 E-value=6.1e-11 Score=126.52 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=37.8
Q ss_pred CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCC
Q 019584 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP 258 (338)
Q Consensus 199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 258 (338)
++|++|++++|.....+|..++++++|+.|++++|..-+.+|..+ .+++|+.|++++|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 466777777776666677777777778888887765433566544 45555555555543
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=8.3e-11 Score=125.50 Aligned_cols=160 Identities=26% Similarity=0.243 Sum_probs=100.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|+|+++.+. .++. .+..+++|+.|+|+++..... +|. +..+++|++|+|++|.....+|..+..+++|+.
T Consensus 611 ~~L~~L~L~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 46777777777765 3344 556677777777776543222 443 666777777777776555567777777777777
Q ss_pred EEccCCCCCcccccccCCCcchhhcCC---------------------CCCCEEEccCCCCCCCCchhc-----------
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENL---------------------TNLKALDLINVHISSTVPHTL----------- 219 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l---------------------~~L~~L~Ls~N~l~~~~p~~l----------- 219 (338)
|++++|.. + ..+|..+ ++ .+|++|++++|.+. .+|..+
T Consensus 686 L~L~~c~~----L----~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 686 LDMSRCEN----L----EILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILC 755 (1153)
T ss_pred EeCCCCCC----c----CccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-ccccccccccccccccc
Confidence 77776531 0 1222211 23 34555555555544 233321
Q ss_pred -------------------ccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 220 -------------------ANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 220 -------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
...++|+.|+|++|...+.+|..+.++++|+.|++++|..-+.+|..
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 11246788888888777788999999999999999988655566643
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=2.2e-11 Score=101.48 Aligned_cols=126 Identities=30% Similarity=0.387 Sum_probs=42.3
Q ss_pred cccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 114 LFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
+.+...++.|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+.
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~---------~i~ 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS---------SIS 80 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS------------S-C
T ss_pred ccccccccccccccccccc--c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC---------ccc
Confidence 3444556777777777653 2 2344 4567777777777777 443 4666777777777777754 233
Q ss_pred hhh-cCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcccCc----hhccCCCCCCeeec
Q 019584 193 NLA-ENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGEFP----QEIFQLPNLQFLGL 254 (338)
Q Consensus 193 ~~~-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~l 254 (338)
..+ ..+++|++|++++|++... .-..++.+++|++|+|.+|.++.. + ..+..+|+|+.||-
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 223 3567777777777777542 224566778888888888877732 2 23556778887763
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=8.1e-13 Score=124.45 Aligned_cols=134 Identities=25% Similarity=0.403 Sum_probs=104.9
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.+.++..|++|||+.|+++. +|..+..++ |+.|-+++|+++ .+|+.++.+..|..||.+.|++. .+|
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~---------slp 182 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ---------SLP 182 (722)
T ss_pred hhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---------hch
Confidence 56677777777777777752 666666554 777777777777 67777777777777888877753 577
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCc
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 262 (338)
..+.++.+|+.|++..|++.. +|+.+..| .|..||++.|+++ .+|-.|.+|+.|++|-|.+|++...
T Consensus 183 sql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 778888888888888888874 67777754 4889999999999 8999999999999999999999863
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=2.4e-12 Score=127.29 Aligned_cols=150 Identities=25% Similarity=0.273 Sum_probs=88.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
.++.|.+.+|.+++...+ .+.++++|+.|+|++|++... ....+.++..|++|+||+|+++ .+|+.+..+..|++|
T Consensus 360 ~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHhcCcccccchh--hhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 456666677777666555 666677777777777766532 2234566667777777777777 666767777777777
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
...+|++. .+| .+..+++|+.+|++.|+++... |... ..++|++|||++|.-...--+.+..++++..
T Consensus 436 ~ahsN~l~---------~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 436 RAHSNQLL---------SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred hhcCCcee---------ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhh
Confidence 77777642 345 5666777777777777765432 2222 2266777777777632222333444444444
Q ss_pred eeccCC
Q 019584 252 LGLCGG 257 (338)
Q Consensus 252 L~l~~N 257 (338)
.++.-|
T Consensus 505 ~~i~~~ 510 (1081)
T KOG0618|consen 505 MDITLN 510 (1081)
T ss_pred eecccC
Confidence 444433
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-12 Score=127.19 Aligned_cols=162 Identities=27% Similarity=0.330 Sum_probs=86.4
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
+++.+|++.|++.+ +|. .+..+.+|+.++..+|+++. +|..+....+|+.|.+.+|.+. .+|.....+++|++|
T Consensus 242 nl~~~dis~n~l~~-lp~--wi~~~~nle~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPE--WIGACANLEALNANHNRLVA--LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cceeeecchhhhhc-chH--HHHhcccceEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 44444444444442 223 44445555555555555431 3333333333333333334444 455555566777777
Q ss_pred EccCCCCCcccccc-------------------------------------cC----CCcchhhcCCCCCCEEEccCCCC
Q 019584 173 DLSYSNFDTFYLKL-------------------------------------QK----PGLANLAENLTNLKALDLINVHI 211 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~-------------------------------------~~----~~~~~~~~~l~~L~~L~Ls~N~l 211 (338)
+|..|++..++-.. .. ...-+.+.++++|+.|+|++|++
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 77777765431000 00 11112345566777777777777
Q ss_pred CCCCchhcccCCCCCeeecccccCcc----------------------cCchhccCCCCCCeeeccCCCCCC
Q 019584 212 SSTVPHTLANLSSLRFSSLSGCRLQG----------------------EFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 212 ~~~~p~~l~~l~~L~~L~Ls~N~l~~----------------------~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
.......+.++..|++|+||+|+++. .+| ++.+++.|+.+|++.|.++-
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence 65444555666667777777776651 244 45667777778888777764
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.9e-11 Score=100.81 Aligned_cols=124 Identities=24% Similarity=0.276 Sum_probs=53.4
Q ss_pred CcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh-cCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL-LELSNL 169 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L 169 (338)
.++++|+|.+|.|+.. . .+. .+.+|+.|++++|.++. + +.+..+++|++|++++|.++ .+++.+ ..+++|
T Consensus 19 ~~~~~L~L~~n~I~~I-e---~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI-E---NLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-c---chhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 3678999999998742 2 344 57899999999999974 3 35788999999999999999 565555 468999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC---chhcccCCCCCeeec
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV---PHTLANLSSLRFSSL 230 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~L 230 (338)
++|++++|++.++ .--..+..+++|++|++.+|.++... ...+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l-------~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDL-------NELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SC-------CCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCCh-------HHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999999998652 12355678999999999999997531 234567899999884
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=9.5e-12 Score=109.19 Aligned_cols=133 Identities=29% Similarity=0.314 Sum_probs=109.7
Q ss_pred CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhc
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE 196 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~ 196 (338)
...|+.+||++|.|+. +.+++.-.+.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+-.+-.
T Consensus 283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls---------~~~Gwh~ 349 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA---------ECVGWHL 349 (490)
T ss_pred Hhhhhhccccccchhh--hhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH---------hhhhhHh
Confidence 4578899999999973 7778888899999999999998 443 4888999999999999864 3445556
Q ss_pred CCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCccc-CchhccCCCCCCeeeccCCCCCCcCC
Q 019584 197 NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 197 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
++.+++.|.|+.|.+.. -..++++-+|.+||+++|++... -...++++|.|+++.+.+|++.+...
T Consensus 350 KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 78899999999998864 25578889999999999999832 22468899999999999999998544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=1.9e-11 Score=110.72 Aligned_cols=148 Identities=20% Similarity=0.173 Sum_probs=108.3
Q ss_pred CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC-CCCCcccc-------------
Q 019584 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY-SNFDTFYL------------- 184 (338)
Q Consensus 119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~l------------- 184 (338)
....++|..|.|+.. .+.+|+.+++|+.||||+|.|+..-|++|.++++|..|-+-+ |+|++++-
T Consensus 68 ~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 456789999999865 778899999999999999999988899999988877766555 88774300
Q ss_pred ------------------------------------cc------------------------------------------
Q 019584 185 ------------------------------------KL------------------------------------------ 186 (338)
Q Consensus 185 ------------------------------------~~------------------------------------------ 186 (338)
++
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 00
Q ss_pred -----------------------------c-----CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecc
Q 019584 187 -----------------------------Q-----KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLS 231 (338)
Q Consensus 187 -----------------------------~-----~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 231 (338)
. ....| ..|..+++|+.|++++|+++..-+.+|.....++.|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0 00011 235678899999999999998777777777777777777
Q ss_pred cccCcccCchhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584 232 GCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSE 267 (338)
Q Consensus 232 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 267 (338)
.|++...-...|..+..|+.|+|++|++++.-|..+
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 777764444456667777777777777777655433
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=3.6e-10 Score=113.93 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS 156 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~ 156 (338)
+++.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|++|++++|.++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~-----lp~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA-----LPPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCEEEccCCcCCC-CCC-----CCCCCcEEEecCCccCc--ccCc---ccccceeeccCCchh
Confidence 56777777777763 333 24678888888887763 4432 235555555555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=6.9e-11 Score=112.25 Aligned_cols=165 Identities=32% Similarity=0.413 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCc-CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLV-HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++.|++.+|.++. +++ ....+. +|+.|++++|.+.. +|..+..+++|+.|++++|+++ .+|...+.++.|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~--~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPP--LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCccccc-Ccc--ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 367888888888874 333 344453 78888888888763 5666788888888888888888 6776666778888
Q ss_pred EEEccCCCCCccccc-----------ccC---CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 171 VLDLSYSNFDTFYLK-----------LQK---PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~-----------~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
.|++++|+++...-. +.. ...+..+.++.++..+.+.+|++.. ++..++.++++++|++++|.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 888888886542110 000 1233345555666666666666653 3566778888999999999998
Q ss_pred ccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 237 GEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 237 ~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
.++. ++.+.+++.|++++|.+....|.
T Consensus 269 -~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 -SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -cccc-ccccCccCEEeccCccccccchh
Confidence 5554 78888999999999988876553
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1e-11 Score=117.10 Aligned_cols=152 Identities=30% Similarity=0.405 Sum_probs=131.0
Q ss_pred EEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEE
Q 019584 94 VVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLD 173 (338)
Q Consensus 94 l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (338)
.+..||+.|.+. .+|. .+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..++.++ |+.|-
T Consensus 77 t~~aDlsrNR~~-elp~--~~~~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPE--EACAFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhhccccccc-cCch--HHHHHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 456788888876 5555 6777888888999999885 38899999999999999999999 8999888877 99999
Q ss_pred ccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeee
Q 019584 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLG 253 (338)
Q Consensus 174 Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 253 (338)
+++|++ ..+|..++.++.|..||.+.|.+.. +|..++.+.+|+.|++..|++. .+|+++..+ .|..||
T Consensus 150 ~sNNkl---------~~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lD 217 (722)
T KOG0532|consen 150 VSNNKL---------TSLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLD 217 (722)
T ss_pred EecCcc---------ccCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeee
Confidence 999996 3788888899999999999999984 8889999999999999999999 788888866 589999
Q ss_pred ccCCCCCCcCCC
Q 019584 254 LCGGPLSKKCNN 265 (338)
Q Consensus 254 l~~N~l~~~~p~ 265 (338)
++.|+++- +|-
T Consensus 218 fScNkis~-iPv 228 (722)
T KOG0532|consen 218 FSCNKISY-LPV 228 (722)
T ss_pred cccCceee-cch
Confidence 99999985 563
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=4.1e-10 Score=106.93 Aligned_cols=123 Identities=37% Similarity=0.501 Sum_probs=92.6
Q ss_pred EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCC-CCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584 96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFS-RLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174 (338)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 174 (338)
.+++..+.+..... .+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~---~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNIS---ELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCch---hhhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 57888887743322 35566889999999999974 777777774 9999999999999 78778999999999999
Q ss_pred cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
++|+++ .+|......++|+.|++++|++.. +|........|++|++++|.
T Consensus 171 ~~N~l~---------~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 171 SFNDLS---------DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNS 220 (394)
T ss_pred CCchhh---------hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCc
Confidence 999975 345555577778888888887774 55544444456666666663
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.6e-10 Score=101.63 Aligned_cols=128 Identities=27% Similarity=0.355 Sum_probs=104.8
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
.++++||++|.|+. +.. ++.-.+.++.|+++.|.+.. + ..+..+++|+.||||+|.++ .+...-..+.+.++|
T Consensus 285 ~LtelDLS~N~I~~-iDE--SvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDE--SVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhccccccchhh-hhh--hhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 46789999999873 334 56678999999999999963 3 45889999999999999998 555555678899999
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcc
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
+|++|.+.+ -..+.++-+|..||+++|++... -...+++++.|+++.|.+|.+.+
T Consensus 358 ~La~N~iE~----------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIET----------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhh----------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999998643 24567889999999999998642 24668999999999999999984
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-10 Score=105.47 Aligned_cols=160 Identities=24% Similarity=0.230 Sum_probs=76.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc-cchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ-IPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 170 (338)
++++.|||+.|-+....+-......+++|+.|+|+.|++....-...-..+++|+.|.|+.|.++.. +-..+..+|+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 5677777777766543322113345677777777777664220111112355666666666666522 111223445566
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCccc-Cchh-----c
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGE-FPQE-----I 243 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~-~p~~-----l 243 (338)
.|+|..|... ..-......+..|++|||++|++-... -...+.++.|+.|+++.+.++.. +|+. .
T Consensus 226 ~L~L~~N~~~--------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 226 VLYLEANEII--------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKT 297 (505)
T ss_pred Hhhhhccccc--------ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhh
Confidence 6666655311 000111223445566666666554321 12344555555555555555421 1211 2
Q ss_pred cCCCCCCeeeccCCCC
Q 019584 244 FQLPNLQFLGLCGGPL 259 (338)
Q Consensus 244 ~~l~~L~~L~l~~N~l 259 (338)
..+++|++|++..|++
T Consensus 298 ~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNI 313 (505)
T ss_pred cccccceeeecccCcc
Confidence 2345555555555555
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.1e-10 Score=102.31 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=121.5
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++++.|+|+.|.+.-..... .-..+++|+.|.|+.|.++...+...+..+++|+.|+|..|.....-.....-+..|+
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~-~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSN-TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred cccchhcccccccccCCcccc-chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 579999999999986433221 2236889999999999998766667778899999999999963333333445678899
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-Cchh-----cccCCCCCeeecccccCcccCc--hh
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHT-----LANLSSLRFSSLSGCRLQGEFP--QE 242 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~Ls~N~l~~~~p--~~ 242 (338)
.|||++|++-++ ..-.....++.|+.|+++.+.+... +|+. ...+++|++|++..|++. ..+ ..
T Consensus 250 ~LdLs~N~li~~-------~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~ 321 (505)
T KOG3207|consen 250 ELDLSNNNLIDF-------DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNH 321 (505)
T ss_pred hccccCCccccc-------ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccch
Confidence 999999997432 1224567889999999999988753 2332 346789999999999997 333 34
Q ss_pred ccCCCCCCeeeccCCCCCCc
Q 019584 243 IFQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 243 l~~l~~L~~L~l~~N~l~~~ 262 (338)
+..+++|+.|.+..|+++.+
T Consensus 322 l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 322 LRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccchhhhhhccccccccc
Confidence 55677888888888888864
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.1e-09 Score=73.81 Aligned_cols=60 Identities=35% Similarity=0.535 Sum_probs=35.8
Q ss_pred CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCC
Q 019584 200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL 259 (338)
Q Consensus 200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 259 (338)
+|++|++++|+++...+..+..+++|++|++++|.++...|..+..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455566666655544445556666666666666666644445566666666666666653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.6e-09 Score=72.08 Aligned_cols=59 Identities=32% Similarity=0.461 Sum_probs=27.1
Q ss_pred CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC
Q 019584 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN 178 (338)
Q Consensus 119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 178 (338)
+|++|++++|+++.. .+..+.++++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444444444421 22344445555555555555543333344455555555555443
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.72 E-value=9.4e-10 Score=86.17 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=95.1
Q ss_pred ccEEEccCCCCCCCCCch---hhhcCCCCcEEEcccccCccccchhhc-CCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584 120 LQRLSLFDNNFNFSEIPS---AILNFSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLSYSNFDTFYLKLQKPGLANLA 195 (338)
Q Consensus 120 L~~L~L~~n~l~~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~ 195 (338)
+..++|+++.+-. +++ .+.....|+..+|++|.+. .+|+.|. ..+.++.|++++|.++ .+|..+
T Consensus 29 ~h~ldLssc~lm~--i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis---------dvPeE~ 96 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY--IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS---------DVPEEL 96 (177)
T ss_pred hhhcccccchhhH--HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh---------hchHHH
Confidence 4456666665531 333 3444556667788888888 6666664 4457888888888863 567778
Q ss_pred cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584 196 ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 196 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
..++.|+.|+++.|.+.. .|..+..+.++.+|+..+|.+. ++|..+.--...-..++.++++.+.+|.-...
T Consensus 97 Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa 168 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA 168 (177)
T ss_pred hhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence 888888888888888874 6777777888899999999887 67765443344455667888999988865443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.60 E-value=2.6e-08 Score=89.41 Aligned_cols=143 Identities=19% Similarity=0.185 Sum_probs=81.5
Q ss_pred cccCcCccEEEccCCCCCCCCCch----hhhcCCCCcEEEcccccCcccc-------------chhhcCCCCCCEEEccC
Q 019584 114 LFQLVHLQRLSLFDNNFNFSEIPS----AILNFSRLTHLNLSQSYFSGQI-------------PAELLELSNLEVLDLSY 176 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~ 176 (338)
+...++|++|+||+|.+... .+. -+..+..|++|+|.+|.+.-.- ......-+.|+++...+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34456777888888777543 222 3455677777777777665111 11123346777777777
Q ss_pred CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCccc----CchhccCCCC
Q 019584 177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQGE----FPQEIFQLPN 248 (338)
Q Consensus 177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~ 248 (338)
|++.....+ .+...+...+.|+.+.+..|.+... +...+..+++|+.|||.+|-|+.. +...+..+++
T Consensus 167 Nrlen~ga~----~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 167 NRLENGGAT----ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred cccccccHH----HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 775432111 2234455556666666666665422 223455667777777777766532 3344555666
Q ss_pred CCeeeccCCCCCC
Q 019584 249 LQFLGLCGGPLSK 261 (338)
Q Consensus 249 L~~L~l~~N~l~~ 261 (338)
|+.++++++.+..
T Consensus 243 L~El~l~dcll~~ 255 (382)
T KOG1909|consen 243 LRELNLGDCLLEN 255 (382)
T ss_pred heeeccccccccc
Confidence 6677666665553
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=2e-09 Score=104.57 Aligned_cols=129 Identities=28% Similarity=0.332 Sum_probs=95.4
Q ss_pred CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198 (338)
Q Consensus 119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l 198 (338)
.|...+.+.|.+.. +..++.-++.|+.|||++|+++ .+. .+..++.|++|||++|.+. .+|..-..-
T Consensus 165 ~L~~a~fsyN~L~~--mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~---------~vp~l~~~g 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL--MDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR---------HVPQLSMVG 231 (1096)
T ss_pred hHhhhhcchhhHHh--HHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc---------cccccchhh
Confidence 45666777777752 5667778889999999999998 343 7788899999999999864 333322222
Q ss_pred CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccC-chhccCCCCCCeeeccCCCCCCc
Q 019584 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF-PQEIFQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~ 262 (338)
..|+.|++.+|.++.. ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.||++.|.
T Consensus 232 c~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 3489999999988743 44778899999999999887531 12345667788999999999885
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=4.8e-08 Score=87.72 Aligned_cols=117 Identities=23% Similarity=0.299 Sum_probs=59.0
Q ss_pred hcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC
Q 019584 140 LNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV 215 (338)
Q Consensus 140 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 215 (338)
...+.|+.+.++.|.|... +...+..+++|+.|||.+|-++... ...+...+..+++|++|++++|.+....
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg----s~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG----SVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH----HHHHHHHhcccchheeeccccccccccc
Confidence 3334455555555444311 1223445566666666666543110 0122344555566666666666665433
Q ss_pred chhc-----ccCCCCCeeecccccCccc----CchhccCCCCCCeeeccCCCCC
Q 019584 216 PHTL-----ANLSSLRFSSLSGCRLQGE----FPQEIFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 216 p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 260 (338)
...+ ...++|+.|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 3222 1245666666666666532 2223344566777777777763
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=8.2e-09 Score=80.98 Aligned_cols=139 Identities=24% Similarity=0.283 Sum_probs=96.1
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+..+||+++.+......++.+....+|+..+|++|.+.. +|+.|. .++.++.|+|++|+++ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 4556788888765222222245566778888999998864 566554 4568899999999998 88988999999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhcc
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF 244 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 244 (338)
|+++.|.+. ..|..+..+.+|..|+..+|.+. ++|..+-.-...-..++.++.+.+.-+..+.
T Consensus 105 lNl~~N~l~---------~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 105 LNLRFNPLN---------AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred cccccCccc---------cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 999999863 55677777888888998888876 3554433223333445566667665554433
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.46 E-value=2.6e-07 Score=58.44 Aligned_cols=42 Identities=40% Similarity=0.936 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEc
Q 019584 38 DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCN 88 (338)
Q Consensus 38 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~ 88 (338)
++|++||++||+++..+.. ..+.+|+... ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~--------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS--------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC---------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC--------cccccCCCcC-CCCCeeeccEEeC
Confidence 6899999999999986332 2789998321 2799999999994
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.29 E-value=7.7e-07 Score=91.79 Aligned_cols=107 Identities=24% Similarity=0.244 Sum_probs=73.3
Q ss_pred CcEEEEEeCCCC--ceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 92 GHVVELDLASSC--LYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 92 ~~l~~L~Ls~n~--l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
+.+++|-+.+|. +...... .|..++.|+.|||++|.-.+ .+|+.++.+-+|++|+++++.+. .+|..+.++..|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 456677777664 2211111 36668888888888765433 38888888888888888888888 788888888888
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH 210 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 210 (338)
.+||+..+... ..+|.....+++|++|.+-.-.
T Consensus 621 ~~Lnl~~~~~l--------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRL--------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heecccccccc--------ccccchhhhcccccEEEeeccc
Confidence 88888877531 2345556667888888776543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=2.3e-08 Score=97.31 Aligned_cols=126 Identities=28% Similarity=0.325 Sum_probs=95.2
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh-hcCCCCCCE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNLEV 171 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~ 171 (338)
.+...+.+.|.+.. ... ++.-++.|+.|+|+.|+++.. +.+..+++|++|||++|.+. .+|.. ...+ .|+.
T Consensus 165 ~L~~a~fsyN~L~~-mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-MDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQL 236 (1096)
T ss_pred hHhhhhcchhhHHh-HHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhh-hhee
Confidence 45667778887763 223 577788999999999999743 47889999999999999998 67652 2233 4999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCc
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
|++++|.+++ -..+.++.+|+.||++.|-+.+.- -..+..+..|+.|+|.+|.+-
T Consensus 237 L~lrnN~l~t----------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTT----------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHh----------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999998643 235778999999999999887531 123456678899999999876
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.26 E-value=1.1e-06 Score=90.75 Aligned_cols=148 Identities=24% Similarity=0.221 Sum_probs=105.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC--CCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN--FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++.+.+-+|.+.... .-...+.|++|-+..|. +... ....|..++.|++|||++|.=-+.+|..++.+-+|+
T Consensus 524 ~~rr~s~~~~~~~~~~----~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIA----GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred heeEEEEeccchhhcc----CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4556666666654221 11234578888888886 4322 344578899999999998876678999999999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc--ccCchhccCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ--GEFPQEIFQLPN 248 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~ 248 (338)
+|+++++.++ .+|..+.++..|.+||+..+.-...+|.....+.+|++|.+...... ...-..+..+.+
T Consensus 599 yL~L~~t~I~---------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~ 669 (889)
T KOG4658|consen 599 YLDLSDTGIS---------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH 669 (889)
T ss_pred cccccCCCcc---------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence 9999999863 68899999999999999988766566777777999999998766422 222334445555
Q ss_pred CCeeec
Q 019584 249 LQFLGL 254 (338)
Q Consensus 249 L~~L~l 254 (338)
|+.+..
T Consensus 670 L~~ls~ 675 (889)
T KOG4658|consen 670 LENLSI 675 (889)
T ss_pred hhhhee
Confidence 555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.9e-07 Score=89.36 Aligned_cols=149 Identities=29% Similarity=0.318 Sum_probs=100.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
.+..+++..|.+.. +.. .+..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 73 ~l~~l~l~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHHhhccchhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45556666776653 112 46778888888888888863 333367788888888888888843 235666778888
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
++++|.++.+ ..+..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+. . ...+..+..+..
T Consensus 146 ~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~-i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 146 NLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-E-IEGLDLLKKLVL 212 (414)
T ss_pred eeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-c-ccchHHHHHHHH
Confidence 8888886532 233447888888888888875433 2 467788888888888876 2 233444455555
Q ss_pred eeccCCCCCC
Q 019584 252 LGLCGGPLSK 261 (338)
Q Consensus 252 L~l~~N~l~~ 261 (338)
+++.+|.++.
T Consensus 213 ~~l~~n~i~~ 222 (414)
T KOG0531|consen 213 LSLLDNKISK 222 (414)
T ss_pred hhccccccee
Confidence 6777776664
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=6.6e-08 Score=85.24 Aligned_cols=133 Identities=25% Similarity=0.279 Sum_probs=89.7
Q ss_pred CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC-CCcccccccCCCcchhhcC
Q 019584 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN-FDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~ 197 (338)
.|++|||++..++...+-..+..+.+|+.|.|.++++.+.+...+..-.+|+.||++.++ ++. ....-.+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-------n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-------NALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-------hHHHHHHHh
Confidence 488888888887655455567788888888888888888887788888888888888764 221 123334667
Q ss_pred CCCCCEEEccCCCCCCCCchh-----------------------------cccCCCCCeeeccccc-CcccCchhccCCC
Q 019584 198 LTNLKALDLINVHISSTVPHT-----------------------------LANLSSLRFSSLSGCR-LQGEFPQEIFQLP 247 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~p~~-----------------------------l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~ 247 (338)
++.|.+|+++.+.++.+.... ...+++|.+|||++|. ++......+.+++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 777777777777665322110 1345777777777764 4444445566777
Q ss_pred CCCeeeccCCC
Q 019584 248 NLQFLGLCGGP 258 (338)
Q Consensus 248 ~L~~L~l~~N~ 258 (338)
.|++|.++.+.
T Consensus 339 ~L~~lSlsRCY 349 (419)
T KOG2120|consen 339 YLQHLSLSRCY 349 (419)
T ss_pred hheeeehhhhc
Confidence 77777776654
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.2e-07 Score=83.53 Aligned_cols=161 Identities=29% Similarity=0.338 Sum_probs=109.5
Q ss_pred CcEEEEEeCCCCceee-cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-Cccc-cchhhcCCCC
Q 019584 92 GHVVELDLASSCLYGS-INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQ-IPAELLELSN 168 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~ 168 (338)
.+++.|||++..|+.. +.. -+..+.+|+.|.+.++++.+. +...+.+-.+|+.|+|+.+. ++.. ..--+.+++.
T Consensus 185 sRlq~lDLS~s~it~stl~~--iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHG--ILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHH--HHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 4688999999888632 111 355678889999999988765 77778888888888888763 3311 1112466778
Q ss_pred CCEEEccCCCCCccccc---------------------ccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccCCCCC
Q 019584 169 LEVLDLSYSNFDTFYLK---------------------LQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANLSSLR 226 (338)
Q Consensus 169 L~~L~Ls~N~l~~~~l~---------------------~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~ 226 (338)
|..|+++.+.+.....+ ++...+......+++|.+|||++|. ++......+.+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888887765321000 0011223334578999999999875 4544556677889999
Q ss_pred eeecccccCcccCchh---ccCCCCCCeeeccCC
Q 019584 227 FSSLSGCRLQGEFPQE---IFQLPNLQFLGLCGG 257 (338)
Q Consensus 227 ~L~Ls~N~l~~~~p~~---l~~l~~L~~L~l~~N 257 (338)
+|.++.|.. .+|+. +...|.|.+||+.+.
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 999999974 35654 456789999998653
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=2e-07 Score=89.16 Aligned_cols=154 Identities=32% Similarity=0.338 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.|++.+|.|..... .+..+++|++|++++|.|+.. ..+..++.|+.|++++|.++ .+. .+..++.|+
T Consensus 94 ~~~l~~l~l~~n~i~~i~~---~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIEN---LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLIS-DIS-GLESLKSLK 165 (414)
T ss_pred ccceeeeeccccchhhccc---chhhhhcchheeccccccccc---cchhhccchhhheeccCcch-hcc-CCccchhhh
Confidence 4688999999999985431 267799999999999999753 34677788999999999998 443 455689999
Q ss_pred EEEccCCCCCcccccccCCCcchh-hcCCCCCCEEEccCCCCCCCCc--------------------hhcccCCC--CCe
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISSTVP--------------------HTLANLSS--LRF 227 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p--------------------~~l~~l~~--L~~ 227 (338)
.+++++|.+.. +... ...+.+++.+++++|.+..... ..+..+.. |+.
T Consensus 166 ~l~l~~n~i~~---------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~ 236 (414)
T KOG0531|consen 166 LLDLSYNRIVD---------IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRE 236 (414)
T ss_pred cccCCcchhhh---------hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHH
Confidence 99999999753 1111 4667777788888777653110 00111122 567
Q ss_pred eecccccCcccCchhccCCCCCCeeeccCCCCCCc
Q 019584 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 262 (338)
+++++|.+. ..++.+..+.++..+++.+|.+...
T Consensus 237 l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 237 LYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HhcccCccc-cccccccccccccccchhhcccccc
Confidence 777777776 4445566667777777777766653
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=7.8e-07 Score=78.58 Aligned_cols=171 Identities=20% Similarity=0.178 Sum_probs=111.6
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc-cchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ-IPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 170 (338)
.+|+++||.+|.|++...-...+.+++.|++|+++.|.+... +-..-..+.+|++|-|.+..+.-. ....+..+|.++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 578999999999986532222566899999999999998643 322114567899999988877633 334457788888
Q ss_pred EEEccCCCCCccccccc-------------CCCcc--------hhhcCCCCCCEEEccCCCCCCCC-chhcccCCCCCee
Q 019584 171 VLDLSYSNFDTFYLKLQ-------------KPGLA--------NLAENLTNLKALDLINVHISSTV-PHTLANLSSLRFS 228 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~-------------~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 228 (338)
.|.++.|++..+...-. ....+ ..-.-++++..+-+..|.+...- -.....++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 88888885432211100 00000 01123467777777777664321 2334456777789
Q ss_pred ecccccCccc-CchhccCCCCCCeeeccCCCCCCcC
Q 019584 229 SLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 229 ~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
+|+.|++... --.++..+++|..|.+++|++....
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 9999998742 2246788999999999999988654
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.08 E-value=5e-06 Score=52.75 Aligned_cols=35 Identities=40% Similarity=0.621 Sum_probs=16.6
Q ss_pred CCcEEEcccccCccccchhhcCCCCCCEEEccCCCC
Q 019584 144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF 179 (338)
Q Consensus 144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (338)
+|++|++++|+|+ .+|..+..+++|++|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 4455555555555 3444455555555555555544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=6.9e-06 Score=52.09 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
++|++|++++|+++. +|+.++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 356777777777763 5556677777777777777766
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=7e-06 Score=71.82 Aligned_cols=143 Identities=24% Similarity=0.218 Sum_probs=67.7
Q ss_pred cccCcCccEEEccCCCCCCCCCchh----hhcCCCCcEEEcccccCcc----ccchh---------hcCCCCCCEEEccC
Q 019584 114 LFQLVHLQRLSLFDNNFNFSEIPSA----ILNFSRLTHLNLSQSYFSG----QIPAE---------LLELSNLEVLDLSY 176 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~p~~----l~~l~~L~~L~Ls~n~l~~----~~p~~---------l~~l~~L~~L~Ls~ 176 (338)
+.++++|+..+||+|.+... .|+. +++-+.|++|.|++|.+.- .+... ..+-|.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~-~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSE-FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcc-cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34455566666666655433 3332 2334555666666555431 11111 11234555555555
Q ss_pred CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-----hhcccCCCCCeeecccccCccc----CchhccCCC
Q 019584 177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-----HTLANLSSLRFSSLSGCRLQGE----FPQEIFQLP 247 (338)
Q Consensus 177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-----~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~ 247 (338)
|++...... .....+....+|+++.+..|.|.-... ..+..+.+|+.|||.+|.++-. +...+..++
T Consensus 167 NRlengs~~----~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 167 NRLENGSKE----LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred chhccCcHH----HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 554221000 001122233456666666665542211 1223456777777777776632 223445566
Q ss_pred CCCeeeccCCCCCC
Q 019584 248 NLQFLGLCGGPLSK 261 (338)
Q Consensus 248 ~L~~L~l~~N~l~~ 261 (338)
.|+.|.+.++-++.
T Consensus 243 ~lrEL~lnDClls~ 256 (388)
T COG5238 243 LLRELRLNDCLLSN 256 (388)
T ss_pred hhhhccccchhhcc
Confidence 66777776665554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.1e-05 Score=65.99 Aligned_cols=107 Identities=20% Similarity=0.204 Sum_probs=67.8
Q ss_pred cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~ 197 (338)
.....+||++|.+.. ...+..++.|.+|.+++|+|+..-|.--.-+++|..|.|.+|++..+ +. -+.+..
T Consensus 42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l------~d-l~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL------GD-LDPLAS 111 (233)
T ss_pred cccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh------hh-cchhcc
Confidence 455667888887642 23466778888888888888844343334457788888888887542 11 123456
Q ss_pred CCCCCEEEccCCCCCCCC---chhcccCCCCCeeeccccc
Q 019584 198 LTNLKALDLINVHISSTV---PHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~ 234 (338)
+|.|++|.+-+|.+...- -..+..+++|+.||..+-.
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 777788877777765321 1234566777877776543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=4.1e-06 Score=84.41 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=26.0
Q ss_pred CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (338)
+|.|+.|.+.+-.+...++.....++++|..||+|+++++ .+ ..++.+++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccC
Confidence 4555555555444432222233334455555555555544 22 3444455555544443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.1e-05 Score=81.29 Aligned_cols=136 Identities=25% Similarity=0.301 Sum_probs=93.0
Q ss_pred cCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCcc-ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584 118 VHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSG-QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA 195 (338)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~ 195 (338)
.+|+.|++++...-...-|..++ .+|+|+.|.+++-.+.. .+-....++++|..||+|+.+++. + ..+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---------l-~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN---------L-SGI 191 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC---------c-HHH
Confidence 47888888876543222344444 47889999988876652 223344678899999999988642 2 567
Q ss_pred cCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccC--ch----hccCCCCCCeeeccCCCCCCcC
Q 019584 196 ENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEF--PQ----EIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 196 ~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~----~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
+++++|+.|.+.+=.+.. ..-..+.+|++|+.||+|........ .. .-..+|+|+.||.+++.+....
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 888888888887766653 23345678999999999987765321 11 1234789999999988877654
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=3.6e-05 Score=64.61 Aligned_cols=108 Identities=22% Similarity=0.174 Sum_probs=80.3
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccc--hhhcCCCCCC
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIP--AELLELSNLE 170 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~ 170 (338)
+...+||++|.+.... .+..++.|.+|.+++|+|+.. -|.--..+++|+.|.|.+|.+. .+. ..+..++.|+
T Consensus 43 ~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhcc----cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 5678999999986432 567789999999999999864 4554455788999999999987 332 2356789999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 211 (338)
+|.+-+|..++. . .-=--.+..+|+|+.||...-..
T Consensus 117 ~Ltll~Npv~~k--~---~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 117 YLTLLGNPVEHK--K---NYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eeeecCCchhcc--c---CceeEEEEecCcceEeehhhhhH
Confidence 999999986531 0 11123467899999999876443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=0.00012 Score=68.83 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~ 170 (338)
.+++.|++++|.+.. +|. --.+|+.|.++++.--. .+|..+. .+|++|++++| .+. .+|. +|+
T Consensus 52 ~~l~~L~Is~c~L~s-LP~-----LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe 115 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV-----LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVR 115 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC-----CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccc
Confidence 467789999887763 222 12358889988744322 2565442 57899999888 444 4553 467
Q ss_pred EEEccCCCC
Q 019584 171 VLDLSYSNF 179 (338)
Q Consensus 171 ~L~Ls~N~l 179 (338)
.|+++.+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 777776653
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.0002 Score=67.37 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=75.8
Q ss_pred cccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCC-CCCcccccccCCCcc
Q 019584 114 LFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYS-NFDTFYLKLQKPGLA 192 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~l~~~~~~~~ 192 (338)
+..+.+++.|++++|.++. +|. -..+|++|+++++.--..+|+.+ .++|++|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~---------sLP 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS---------GLP 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc---------ccc
Confidence 3446889999999998863 662 23479999999854333677655 368999999998 432 233
Q ss_pred hhhcCCCCCCEEEccCCCCC--CCCchhcccC------------------CCCCeeecccccCcccCchhccCCCCCCee
Q 019584 193 NLAENLTNLKALDLINVHIS--STVPHTLANL------------------SSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~--~~~p~~l~~l------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 252 (338)
.+|+.|++..+... +.+|..+..| ++|++|++++|... ..|..+. .+|+.|
T Consensus 112 ------~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 112 ------ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred ------cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 23555555554321 2344443322 46888888888765 4454333 478888
Q ss_pred eccCC
Q 019584 253 GLCGG 257 (338)
Q Consensus 253 ~l~~N 257 (338)
+++.|
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 88766
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=6.9e-05 Score=66.55 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=110.2
Q ss_pred cccceeEEc-CCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc
Q 019584 80 CSWDGVKCN-EDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ 158 (338)
Q Consensus 80 c~w~gv~c~-~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 158 (338)
..|..+.|. ...++++.|+|+.|.+...+.. .-..+.+|+.|-|.+..+........+..++.++.|.+|.|.+...
T Consensus 84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred ccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 457777664 3468999999999999865544 2146789999999999987765667778889999999998844311
Q ss_pred c--chhhc---------------------------CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCC
Q 019584 159 I--PAELL---------------------------ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV 209 (338)
Q Consensus 159 ~--p~~l~---------------------------~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N 209 (338)
. .+... -.+++..+-+..|.+.+ ..--.....++.+.-|+|+.|
T Consensus 162 n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~-------~s~ek~se~~p~~~~LnL~~~ 234 (418)
T KOG2982|consen 162 NLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKT-------ESSEKGSEPFPSLSCLNLGAN 234 (418)
T ss_pred ccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccc-------hhhcccCCCCCcchhhhhccc
Confidence 0 00000 13455555555554432 111234456677788999999
Q ss_pred CCCCC-CchhcccCCCCCeeecccccCcccCch------hccCCCCCCeee
Q 019584 210 HISST-VPHTLANLSSLRFSSLSGCRLQGEFPQ------EIFQLPNLQFLG 253 (338)
Q Consensus 210 ~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ 253 (338)
++..- -.+.+..++.|..|.+++|.+...+-. -++.+++++.|+
T Consensus 235 ~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 235 NIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 88642 235677889999999999987754322 245677777765
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.42 E-value=7.8e-05 Score=64.95 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=16.2
Q ss_pred CCCCcEEEcccc--cCccccchhhcCCCCCCEEEccCCCC
Q 019584 142 FSRLTHLNLSQS--YFSGQIPAELLELSNLEVLDLSYSNF 179 (338)
Q Consensus 142 l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (338)
+++|++|.++.| .+.+.++.....+++|++|++++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 444444444444 33333332233334444444444443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=8.2e-05 Score=64.82 Aligned_cols=106 Identities=27% Similarity=0.356 Sum_probs=73.6
Q ss_pred hhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchh
Q 019584 139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHT 218 (338)
Q Consensus 139 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 218 (338)
...+..|+.|++.+..++ ++ ..+-.|++|++|.++.|.+. .. +.++.....+++|++|++++|++.. +..
T Consensus 39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~---~~---~~l~vl~e~~P~l~~l~ls~Nki~~--lst 108 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRR---VS---GGLEVLAEKAPNLKVLNLSGNKIKD--LST 108 (260)
T ss_pred cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCccc---cc---ccceehhhhCCceeEEeecCCcccc--ccc
Confidence 344566777777777776 22 24567889999999999543 22 4555566677999999999999873 333
Q ss_pred ---cccCCCCCeeecccccCcccCc---hhccCCCCCCeeec
Q 019584 219 ---LANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGL 254 (338)
Q Consensus 219 ---l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l 254 (338)
+..+.+|..|++.+|..+..-- ..+.-+++|++||-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 4567788999999998775211 23444677777763
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.29 E-value=0.00025 Score=62.30 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=106.8
Q ss_pred CcEEEEEeCCCCceeecCCC--CccccCcCccEEEccCCCCCC---CCCchhh---------hcCCCCcEEEcccccCcc
Q 019584 92 GHVVELDLASSCLYGSINST--SSLFQLVHLQRLSLFDNNFNF---SEIPSAI---------LNFSRLTHLNLSQSYFSG 157 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~---~~~p~~l---------~~l~~L~~L~Ls~n~l~~ 157 (338)
++++.++||+|.+....+.. ..++.-..|.+|.+++|.+.. ..+-..+ ..-+.|+++....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 58899999999887665541 134566889999999998742 1122222 23467899999999886
Q ss_pred ccchh-----hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCee
Q 019584 158 QIPAE-----LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFS 228 (338)
Q Consensus 158 ~~p~~-----l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L 228 (338)
..|.. +..-..|+++.+..|.|..-..+ ..+-..+..+.+|+.||+..|.++-. +...+..++.|+.|
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~---~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVT---MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhH---HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 33322 22335788888888876521111 01112345678889999999888743 23444556778888
Q ss_pred ecccccCcccCchhc------cCCCCCCeeeccCCCCCCcC
Q 019584 229 SLSGCRLQGEFPQEI------FQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 229 ~Ls~N~l~~~~p~~l------~~l~~L~~L~l~~N~l~~~~ 263 (338)
.+.+|-++.....++ ...++|..|....|...+.+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~ 288 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGI 288 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCce
Confidence 888888775433322 13567777777777666543
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=8.1e-05 Score=65.49 Aligned_cols=103 Identities=22% Similarity=0.131 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch--hhcCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA--ELLELSNL 169 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L 169 (338)
.+++.|+.-|++|.+.. ...+++.|+.|.|+-|+|+. -..+..+++|++|+|..|.|. .+.+ .+.++++|
T Consensus 19 ~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCCccHHH----HHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchh
Confidence 35667777777776432 44567888888888888763 234777888888888888777 3332 35677888
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEE
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD 205 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~ 205 (338)
+.|-|..|...+-.-. .--...+..+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~---nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQ---NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccch---hHHHHHHHHcccchhcc
Confidence 8888887764320000 00012455667777665
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.00011 Score=64.78 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=78.6
Q ss_pred cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA 195 (338)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~ 195 (338)
.+.+.+.|+.-++.+++. ....+++.|+.|.||-|+|+. + ..+..+++|++|.|..|.|.++ .--..+
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~sl-------dEL~YL 84 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIESL-------DELEYL 84 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccccH-------HHHHHH
Confidence 466778899999998753 456789999999999999984 3 3477889999999999997542 112456
Q ss_pred cCCCCCCEEEccCCCCCCCCch-----hcccCCCCCeee
Q 019584 196 ENLTNLKALDLINVHISSTVPH-----TLANLSSLRFSS 229 (338)
Q Consensus 196 ~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l~~L~~L~ 229 (338)
.++++|+.|.|..|.-.+.-+. .+.-+++|+.||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7899999999999988776543 345677887776
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.25 E-value=0.0097 Score=46.64 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=39.0
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.|.++.+|+.+.+.. .+... -...+.++++|+.+.+.++ +...-...+..+++|+.+.+.++- .. .-.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~-~~--------i~~ 74 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNL-KS--------IGD 74 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT--E--------E-T
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccccc-cc--------ccc
Confidence 344455555555543 22211 2233555555666665553 432222344555556666664421 10 111
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 232 (338)
..+..+++|+.+++..+ +.......+.+. +|+.+.+..
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 23444555666665443 332223334444 555555544
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.75 E-value=0.05 Score=42.51 Aligned_cols=117 Identities=13% Similarity=0.167 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.+.+.. .+...... .+..+++|+.+.+.++ +... -...+.++++|+.+.+.+ .+...-...+..+++|+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGEN--AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT--EEEETS-T--EE-TT--TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCEEEECC-CeeEeChh--hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccccc
Confidence 3688888875 45544444 7888889999999886 5432 334677888899999976 444233446677899999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCC
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL 225 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 225 (338)
+++..+ ++. .-...+.+. +|+.+.+.. .+.......|.++++|
T Consensus 86 i~~~~~-~~~--------i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITE--------IGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BE--------EHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccE--------EchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 999766 321 123456666 889988876 3443344556655554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0048 Score=32.63 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=10.9
Q ss_pred CcEEEcccccCccccchhhc
Q 019584 145 LTHLNLSQSYFSGQIPAELL 164 (338)
Q Consensus 145 L~~L~Ls~n~l~~~~p~~l~ 164 (338)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 5555543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0061 Score=32.22 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=9.3
Q ss_pred CCeeecccccCcccCchhc
Q 019584 225 LRFSSLSGCRLQGEFPQEI 243 (338)
Q Consensus 225 L~~L~Ls~N~l~~~~p~~l 243 (338)
|++|||++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.37 E-value=0.00025 Score=68.63 Aligned_cols=61 Identities=25% Similarity=0.344 Sum_probs=33.5
Q ss_pred CCEEEccCCCCCCC----CchhcccC-CCCCeeecccccCcccC----chhccCCCCCCeeeccCCCCCC
Q 019584 201 LKALDLINVHISST----VPHTLANL-SSLRFSSLSGCRLQGEF----PQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 201 L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
+..|++..|.+.+. ..+.+..+ ..++.++++.|.++..- .+.+...+.++.+.+++|++..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44456666655432 12223333 45667777777766432 2334455567777777776664
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.056 Score=26.53 Aligned_cols=10 Identities=40% Similarity=0.524 Sum_probs=3.1
Q ss_pred CcEEEccccc
Q 019584 145 LTHLNLSQSY 154 (338)
Q Consensus 145 L~~L~Ls~n~ 154 (338)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.19 E-value=0.0033 Score=54.24 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=69.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.||++.|++... .. .+..++.|..|+++.|.+.. .|..++++..+..+++.+|..+ ..|.++...+.++
T Consensus 41 ~kr~tvld~~s~r~vn~-~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhh-cc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 35789999999987632 23 56678888999999998863 7888888888999999888888 8899999999999
Q ss_pred EEEccCCCCC
Q 019584 171 VLDLSYSNFD 180 (338)
Q Consensus 171 ~L~Ls~N~l~ 180 (338)
++++-.|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 9999888754
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.36 E-value=0.0076 Score=58.52 Aligned_cols=167 Identities=25% Similarity=0.235 Sum_probs=111.5
Q ss_pred EEEEEeCCCCceeecCC--CCccccCcCccEEEccCCCCCCCCCc---hhhhcC-CCCcEEEcccccCccc----cchhh
Q 019584 94 VVELDLASSCLYGSINS--TSSLFQLVHLQRLSLFDNNFNFSEIP---SAILNF-SRLTHLNLSQSYFSGQ----IPAEL 163 (338)
Q Consensus 94 l~~L~Ls~n~l~~~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l 163 (338)
+..++|.+|.+...... ...+...++|+.|++++|.+.+.... ..+... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 67788999988654221 01455688999999999998743111 122222 4677888888888743 45556
Q ss_pred cCCCCCCEEEccCCCCCcccccccCCCcchhhc----CCCCCCEEEccCCCCCCCC----chhcccCCC-CCeeeccccc
Q 019584 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE----NLTNLKALDLINVHISSTV----PHTLANLSS-LRFSSLSGCR 234 (338)
Q Consensus 164 ~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~-L~~L~Ls~N~ 234 (338)
.....++.+|++.|.+..... ..++..+. ...++++|.+.+|.++... ...+...+. +..|++..|.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~----~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGL----LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhh----HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence 667899999999998743211 12233333 5789999999999987421 123344455 7779999999
Q ss_pred Cccc----CchhccCC-CCCCeeeccCCCCCCcCC
Q 019584 235 LQGE----FPQEIFQL-PNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 235 l~~~----~p~~l~~l-~~L~~L~l~~N~l~~~~p 264 (338)
+.+. ..+.+..+ ..+++++++.|.++..-.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 8854 22334445 678999999999987533
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.65 E-value=0.0057 Score=52.81 Aligned_cols=88 Identities=19% Similarity=0.158 Sum_probs=67.2
Q ss_pred hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCch
Q 019584 138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217 (338)
Q Consensus 138 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 217 (338)
.+..+...+.||++.|++. .+-..++-++.|..||++.|.+. .+|..+.....+..+++..|..+ ..|.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~---------~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK---------FLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh---------hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 4556778888898888877 55566777788888888888753 45666667777777888777776 4788
Q ss_pred hcccCCCCCeeecccccCc
Q 019584 218 TLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 218 ~l~~l~~L~~L~Ls~N~l~ 236 (338)
+++..+.++++++-+|.++
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 8888888888888888766
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.10 E-value=0.3 Score=26.63 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.9
Q ss_pred CCCcEEEcccccCc
Q 019584 143 SRLTHLNLSQSYFS 156 (338)
Q Consensus 143 ~~L~~L~Ls~n~l~ 156 (338)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555544
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.10 E-value=0.3 Score=26.63 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.9
Q ss_pred CCCcEEEcccccCc
Q 019584 143 SRLTHLNLSQSYFS 156 (338)
Q Consensus 143 ~~L~~L~Ls~n~l~ 156 (338)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.89 E-value=0.29 Score=26.67 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=7.7
Q ss_pred CCCCeeecccccCc
Q 019584 223 SSLRFSSLSGCRLQ 236 (338)
Q Consensus 223 ~~L~~L~Ls~N~l~ 236 (338)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.89 E-value=0.29 Score=26.67 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=7.7
Q ss_pred CCCCeeecccccCc
Q 019584 223 SSLRFSSLSGCRLQ 236 (338)
Q Consensus 223 ~~L~~L~Ls~N~l~ 236 (338)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.69 E-value=0.066 Score=51.75 Aligned_cols=91 Identities=26% Similarity=0.285 Sum_probs=49.2
Q ss_pred cccCcCccEEEccCC-C-CCCC--CCchhhhcCCCCcEEEccccc-Cccccchhhc-CCCCCCEEEccCCC-CCcccccc
Q 019584 114 LFQLVHLQRLSLFDN-N-FNFS--EIPSAILNFSRLTHLNLSQSY-FSGQIPAELL-ELSNLEVLDLSYSN-FDTFYLKL 186 (338)
Q Consensus 114 l~~l~~L~~L~L~~n-~-l~~~--~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~N~-l~~~~l~~ 186 (338)
....+.|+.|+++++ . .... ........+++|+.|+++.+. ++...-..+. .+++|++|.+.++. +++
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~----- 284 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD----- 284 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch-----
Confidence 445677777777652 1 1110 012233445677777777766 4433223332 25677777766554 332
Q ss_pred cCCCcchhhcCCCCCCEEEccCCCC
Q 019584 187 QKPGLANLAENLTNLKALDLINVHI 211 (338)
Q Consensus 187 ~~~~~~~~~~~l~~L~~L~Ls~N~l 211 (338)
..+-.....+++|++|+++.+..
T Consensus 285 --~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 285 --EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred --hHHHHHHHhcCcccEEeeecCcc
Confidence 23344455667777777776654
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=89.07 E-value=0.2 Score=48.43 Aligned_cols=131 Identities=29% Similarity=0.301 Sum_probs=70.0
Q ss_pred CcCccEEEccCCCC-CCCCCchhhhcCCCCcEEEcccc-cCccccc----hhhcCCCCCCEEEccCCC-CCcccccccCC
Q 019584 117 LVHLQRLSLFDNNF-NFSEIPSAILNFSRLTHLNLSQS-YFSGQIP----AELLELSNLEVLDLSYSN-FDTFYLKLQKP 189 (338)
Q Consensus 117 l~~L~~L~L~~n~l-~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~ 189 (338)
.+.|+.|.+.++.- +...+-.....+++|+.|+++++ ......+ .....+.+|+.|++++.. +++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~------- 259 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI------- 259 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-------
Confidence 56777777776642 21112234556778888888763 1111111 122445777888888776 4331
Q ss_pred CcchhhcCCCCCCEEEccCCC-CCCCC-chhcccCCCCCeeecccccCccc--CchhccCCCCCCeeec
Q 019584 190 GLANLAENLTNLKALDLINVH-ISSTV-PHTLANLSSLRFSSLSGCRLQGE--FPQEIFQLPNLQFLGL 254 (338)
Q Consensus 190 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~l 254 (338)
.+......+++|++|.+.++. +++.. -.....++.|++|+++++..... +......+++++.+.+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 222233346788888877666 44432 22234567788888887764311 2222334555555443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.01 E-value=0.083 Score=28.32 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=8.2
Q ss_pred CCCCeeecccccCcccC
Q 019584 223 SSLRFSSLSGCRLQGEF 239 (338)
Q Consensus 223 ~~L~~L~Ls~N~l~~~~ 239 (338)
++|++|+|++|++++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45556666666655443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.38 E-value=0.082 Score=44.79 Aligned_cols=83 Identities=22% Similarity=0.228 Sum_probs=40.3
Q ss_pred CCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccC
Q 019584 144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANL 222 (338)
Q Consensus 144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l 222 (338)
.++.+|-++..|...--+.+.++++++.|.+.++.- +. ...+...-.-.++|+.|++++|. |+..--..+..+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~----~d--D~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY----FD--DWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccc----hh--hHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 355666666666654444555566666666655531 00 00000011123556666666543 444444455555
Q ss_pred CCCCeeeccc
Q 019584 223 SSLRFSSLSG 232 (338)
Q Consensus 223 ~~L~~L~Ls~ 232 (338)
++|+.|.+.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 6666655543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.45 E-value=0.16 Score=43.02 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=18.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN 129 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 129 (338)
.|+.+|-++..|...--. .+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHH--HHhccchhhhheecccc
Confidence 456666666666544333 44555555555555543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=82.51 E-value=0.68 Score=43.58 Aligned_cols=137 Identities=23% Similarity=0.196 Sum_probs=73.4
Q ss_pred cCcCccEEEccCCCCCCCCCchhh-hcCCCCcEEEccccc-Cccccchhh-cCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 116 QLVHLQRLSLFDNNFNFSEIPSAI-LNFSRLTHLNLSQSY-FSGQIPAEL-LELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.+..|+.|+.+++.......-..+ .+..+|+.|.++.++ |+..--..+ .+.+.|+.+++...... .. +.+.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~---~d---~tL~ 365 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI---TD---GTLA 365 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee---hh---hhHh
Confidence 356667777776543211111222 345677777777765 221111122 34567777777766532 11 2333
Q ss_pred hhhcCCCCCCEEEccCCCCCCCC-----chhcccCCCCCeeecccccCcc-cCchhccCCCCCCeeeccCCC
Q 019584 193 NLAENLTNLKALDLINVHISSTV-----PHTLANLSSLRFSSLSGCRLQG-EFPQEIFQLPNLQFLGLCGGP 258 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~l~~N~ 258 (338)
..-.+++.|+.|.++++...... ...-..+..|+.+.|+++.... ..-+.+..+++|+.+++.+..
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 44456778888888877543211 1111234567778887776542 223345566777777776553
No 85
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=80.46 E-value=1.1 Score=51.55 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=18.7
Q ss_pred EccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 205 DLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 205 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 45566666544555555666666666666554
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.73 E-value=0.87 Score=44.33 Aligned_cols=87 Identities=28% Similarity=0.327 Sum_probs=51.5
Q ss_pred CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCC--CCCCCCchhcccC--CCCCeeecccccCcccCc
Q 019584 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINV--HISSTVPHTLANL--SSLRFSSLSGCRLQGEFP 240 (338)
Q Consensus 165 ~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p 240 (338)
+.+.+..++|++|++..+ + .+...-...|+|+.|+|++| .+.. ..++.++ ..|++|-+.+|.+.....
T Consensus 216 n~p~i~sl~lsnNrL~~L--d----~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHL--D----ALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccchhhch--h----hhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchh
Confidence 456778888888887542 1 33344456688888888888 4432 1223322 457888888888875322
Q ss_pred h---hc----cCCCCCCeeeccCCCCCC
Q 019584 241 Q---EI----FQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 241 ~---~l----~~l~~L~~L~l~~N~l~~ 261 (338)
. .+ ..+|+|..|| |+.+..
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD--G~ev~~ 313 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD--GVEVQP 313 (585)
T ss_pred hhHHHHHHHHHhcchheeec--CcccCc
Confidence 1 11 2466665554 444443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.44 E-value=2 Score=23.64 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=10.2
Q ss_pred CCCeeecccccCcccCch
Q 019584 224 SLRFSSLSGCRLQGEFPQ 241 (338)
Q Consensus 224 ~L~~L~Ls~N~l~~~~p~ 241 (338)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 4443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.33 E-value=2.9 Score=22.99 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=5.9
Q ss_pred CCcEEEcccccCc
Q 019584 144 RLTHLNLSQSYFS 156 (338)
Q Consensus 144 ~L~~L~Ls~n~l~ 156 (338)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444444444443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.00 E-value=3.1 Score=40.69 Aligned_cols=66 Identities=24% Similarity=0.253 Sum_probs=45.7
Q ss_pred cCCCCCCEEEccCCCCCCC--CchhcccCCCCCeeecccc--cCcccCchhccCC--CCCCeeeccCCCCCCcC
Q 019584 196 ENLTNLKALDLINVHISST--VPHTLANLSSLRFSSLSGC--RLQGEFPQEIFQL--PNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 196 ~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N--~l~~~~p~~l~~l--~~L~~L~l~~N~l~~~~ 263 (338)
.+.+.+..++|++|++... +-.--...++|..|+|++| .+. ...++.++ ..|++|-+.||+++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 4568899999999998642 1111123489999999999 444 22334433 46889999999999764
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.75 E-value=4.8 Score=22.34 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=6.6
Q ss_pred CCCEEEccCCCCC
Q 019584 200 NLKALDLINVHIS 212 (338)
Q Consensus 200 ~L~~L~Ls~N~l~ 212 (338)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555553
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=61.26 E-value=5.3 Score=32.24 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=8.4
Q ss_pred EEEEEeeehhhHHHHHHH
Q 019584 286 KTVVIGYASGTIIGVILG 303 (338)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (338)
+++++|+++.+++++++.
T Consensus 52 IGvVVGVGg~ill~il~l 69 (154)
T PF04478_consen 52 IGVVVGVGGPILLGILAL 69 (154)
T ss_pred EEEEecccHHHHHHHHHh
Confidence 345555555445443333
No 92
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=57.15 E-value=24 Score=21.63 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=7.5
Q ss_pred EEEeeehhhHHHHHHHHHH
Q 019584 288 VVIGYASGTIIGVILGHIF 306 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~ 306 (338)
..+++..++++.++..+++
T Consensus 15 ~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 15 VGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred EEEEechHHHHHHHHHHhh
Confidence 3333344444444333333
No 93
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=56.42 E-value=7.8 Score=36.76 Aligned_cols=155 Identities=19% Similarity=0.126 Sum_probs=82.4
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCcc--ccchhhcCCCCC
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSG--QIPAELLELSNL 169 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L 169 (338)
.++.|+.+++.-.+..+-..--.+..+|+.|.++.++ ++...+..--.+.+.|+.+++..+.... ++...-.+.+.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 4566666665432111100011346778888887776 2222111222356778888887775541 122222456788
Q ss_pred CEEEccCCCCCcccccccC--CCcchhhcCCCCCCEEEccCCCCC-CCCchhcccCCCCCeeecccccCcc--cCchhcc
Q 019584 170 EVLDLSYSNFDTFYLKLQK--PGLANLAENLTNLKALDLINVHIS-STVPHTLANLSSLRFSSLSGCRLQG--EFPQEIF 244 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~ 244 (338)
+.|.++++.... +. ..+...-..+..|+.+.++++... ...-+.+..+++|+.+++-+++-.. .+...-.
T Consensus 375 r~lslshce~it-----D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~ 449 (483)
T KOG4341|consen 375 RVLSLSHCELIT-----DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT 449 (483)
T ss_pred ccCChhhhhhhh-----hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence 888888776321 00 011222345677888888888754 2334556677888888887775321 1222223
Q ss_pred CCCCCCee
Q 019584 245 QLPNLQFL 252 (338)
Q Consensus 245 ~l~~L~~L 252 (338)
++++++..
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 45665544
No 94
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=50.96 E-value=22 Score=21.72 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=10.1
Q ss_pred EEEeeehhhHHHHHHHHHHhcccH
Q 019584 288 VVIGYASGTIIGVILGHIFSTRKY 311 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~ 311 (338)
++..++...++++.++..+.+||+
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKW 33 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 95
>PHA03265 envelope glycoprotein D; Provisional
Probab=45.54 E-value=38 Score=31.27 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=17.7
Q ss_pred eEEEEEeeehhhHHHH-HHHHHHhcccHHHHHHHcccccc
Q 019584 285 WKTVVIGYASGTIIGV-ILGHIFSTRKYEWLAKTFRLQPK 323 (338)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~ 323 (338)
..+++||++++.+|.+ ++.++++||++.-..+.-..-++
T Consensus 349 ~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k~~~~~~~~ 388 (402)
T PHA03265 349 FVGISVGLGIAGLVLVGVILYVCLRRKKELKKSAQNGLTR 388 (402)
T ss_pred ccceEEccchhhhhhhhHHHHHHhhhhhhhhhhhhcCChh
Confidence 3455555554433322 33345555555544444333333
No 96
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=42.81 E-value=1.2e+02 Score=21.45 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 019584 16 FSFLIFHLAIAHFISSTQPLCHDRERSALLNFKE 49 (338)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~Ll~~~~ 49 (338)
++..+|+++.............++|.+.|-++.+
T Consensus 16 fVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~ 49 (75)
T PF06667_consen 16 FVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYE 49 (75)
T ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence 3344555555556666666777888877776653
No 97
>PTZ00370 STEVOR; Provisional
Probab=37.51 E-value=22 Score=31.86 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=8.4
Q ss_pred HHHHhcccHHHHHH
Q 019584 303 GHIFSTRKYEWLAK 316 (338)
Q Consensus 303 ~~~~~~~~~~w~~~ 316 (338)
+|+++|||..|...
T Consensus 276 iwlyrrRK~swkhe 289 (296)
T PTZ00370 276 IWLYRRRKNSWKHE 289 (296)
T ss_pred HHHHHhhcchhHHH
Confidence 44566666677544
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.56 E-value=9.2 Score=29.83 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=8.3
Q ss_pred EEEeeehhhHHHHHHHH
Q 019584 288 VVIGYASGTIIGVILGH 304 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (338)
.++++++|++.|++..+
T Consensus 65 ~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGII 81 (122)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHH
Confidence 34555555555554433
No 99
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=35.11 E-value=88 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=14.9
Q ss_pred EEEeeehhhHHHHHH----HHHHhcccHHHHHHHcc
Q 019584 288 VVIGYASGTIIGVIL----GHIFSTRKYEWLAKTFR 319 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~~~ 319 (338)
+++|++.|+++.+++ +.+.+.+|++-+.+|.+
T Consensus 215 iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr 250 (278)
T PF06697_consen 215 IVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMER 250 (278)
T ss_pred EEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455555554443333 22334444555555554
No 100
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.47 E-value=20 Score=32.11 Aligned_cols=11 Identities=27% Similarity=0.752 Sum_probs=5.6
Q ss_pred HHHhcccHHHH
Q 019584 304 HIFSTRKYEWL 314 (338)
Q Consensus 304 ~~~~~~~~~w~ 314 (338)
|+++|||..|.
T Consensus 281 WlyrrRK~swk 291 (295)
T TIGR01478 281 WLYRRRKKSWK 291 (295)
T ss_pred HHHHhhccccc
Confidence 34455555553
No 101
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=33.37 E-value=18 Score=26.88 Aligned_cols=7 Identities=14% Similarity=0.420 Sum_probs=2.6
Q ss_pred EEeeehh
Q 019584 289 VIGYASG 295 (338)
Q Consensus 289 ~~~~~~~ 295 (338)
+.|++++
T Consensus 68 iagi~vg 74 (96)
T PTZ00382 68 IAGISVA 74 (96)
T ss_pred EEEEEee
Confidence 3333333
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.37 E-value=7.9 Score=30.19 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=9.3
Q ss_pred eEEEEEeeehhhHHHHH
Q 019584 285 WKTVVIGYASGTIIGVI 301 (338)
Q Consensus 285 ~~~~~~~~~~~~~~~~~ 301 (338)
..++++|+.+|++..++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34566666666544333
No 103
>PRK09458 pspB phage shock protein B; Provisional
Probab=32.11 E-value=1.8e+02 Score=20.49 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Q 019584 16 FSFLIFHLAIAHFISSTQPLCHDRERSALLNFK 48 (338)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~e~~~Ll~~~ 48 (338)
++.-+|+++...........-.++|.+-|.++.
T Consensus 16 fVaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~ 48 (75)
T PRK09458 16 FVAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLT 48 (75)
T ss_pred HHHHHHHHHhhcccccCCCCCCHHHHHHHHHHH
Confidence 344455555555656666666777766666554
No 104
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.36 E-value=33 Score=18.32 Aligned_cols=10 Identities=40% Similarity=0.534 Sum_probs=4.7
Q ss_pred CCcEEEcccc
Q 019584 144 RLTHLNLSQS 153 (338)
Q Consensus 144 ~L~~L~Ls~n 153 (338)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 105
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.06 E-value=98 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.9
Q ss_pred eEEEEEeeehhhHHHHHHHHHH
Q 019584 285 WKTVVIGYASGTIIGVILGHIF 306 (338)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~ 306 (338)
-..++||+++|+.+.++++++.
T Consensus 47 nknIVIGvVVGVGg~ill~il~ 68 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILA 68 (154)
T ss_pred CccEEEEEEecccHHHHHHHHH
Confidence 4468899999988877777654
No 106
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=28.08 E-value=37 Score=26.64 Aligned_cols=17 Identities=12% Similarity=0.014 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHhcccH
Q 019584 295 GTIIGVILGHIFSTRKY 311 (338)
Q Consensus 295 ~~~~~~~~~~~~~~~~~ 311 (338)
++|++++++++..+++.
T Consensus 7 iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHN 23 (130)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445544433
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.90 E-value=44 Score=22.80 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=11.6
Q ss_pred eehhhHHHHHHHHHHhcc
Q 019584 292 YASGTIIGVILGHIFSTR 309 (338)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (338)
+++++++|++.+++..++
T Consensus 3 iilali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777766543
No 108
>PF15179 Myc_target_1: Myc target protein 1
Probab=27.01 E-value=29 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.870 Sum_probs=8.7
Q ss_pred ceEEEEEeeehhhHHHHHHH
Q 019584 284 GWKTVVIGYASGTIIGVILG 303 (338)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~ 303 (338)
.|..+++++.+.+++|++++
T Consensus 17 ~~~~lIlaF~vSm~iGLviG 36 (197)
T PF15179_consen 17 DWEDLILAFCVSMAIGLVIG 36 (197)
T ss_pred chhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 109
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.75 E-value=1.1e+02 Score=29.81 Aligned_cols=34 Identities=18% Similarity=-0.104 Sum_probs=16.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEcc
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLF 126 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~ 126 (338)
++++|+...|++.|.......+..-+.++.+++.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~ag 388 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAG 388 (553)
T ss_pred eeeEeeccccccccccccccceeecccccccccc
Confidence 4666666666665554443233334444444443
No 110
>PRK10132 hypothetical protein; Provisional
Probab=26.64 E-value=37 Score=25.90 Aligned_cols=18 Identities=22% Similarity=0.630 Sum_probs=10.8
Q ss_pred eehhhHHHHHHHHHHhcc
Q 019584 292 YASGTIIGVILGHIFSTR 309 (338)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (338)
+++++.||++++++..+|
T Consensus 90 vgiaagvG~llG~Ll~RR 107 (108)
T PRK10132 90 VGTAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 345555666667665554
No 111
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.38 E-value=1.2e+02 Score=29.50 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCCEEEccCCCCCCCCchh---cccCCCCCeeecccccCcc----cCchhccCCCCCCeeeccCC
Q 019584 200 NLKALDLINVHISSTVPHT---LANLSSLRFSSLSGCRLQG----EFPQEIFQLPNLQFLGLCGG 257 (338)
Q Consensus 200 ~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N 257 (338)
-+..+.++.|.+....-.. +..-+.+..|++++|.... .+|..+.....++.+..+.|
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 3555555555554322111 1223456666666665442 23333333334444444444
No 112
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.18 E-value=20 Score=24.33 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=0.0
Q ss_pred EEEeeehhhHHH
Q 019584 288 VVIGYASGTIIG 299 (338)
Q Consensus 288 ~~~~~~~~~~~~ 299 (338)
++.|.++|+++.
T Consensus 14 vIaG~Vvgll~a 25 (64)
T PF01034_consen 14 VIAGGVVGLLFA 25 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 113
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.62 E-value=47 Score=39.24 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=24.9
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCC
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHIS 212 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 212 (338)
||++|+|+. ..+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~Lst--------Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST--------IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc--------cChHHhccCCCceEEEeeCCccc
Confidence 578898752 23457788999999999999875
No 114
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=23.90 E-value=46 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=13.4
Q ss_pred EEEeeehhhHHHHHHHHHHhccc
Q 019584 288 VVIGYASGTIIGVILGHIFSTRK 310 (338)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~ 310 (338)
..||++.+++++++..+...++|
T Consensus 34 ~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 34 AAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred hhHHHHHHHHHHHHHHHhHhhhh
Confidence 34566666777766665544433
No 115
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.60 E-value=13 Score=22.42 Aligned_cols=7 Identities=14% Similarity=0.548 Sum_probs=2.6
Q ss_pred ehhhHHH
Q 019584 293 ASGTIIG 299 (338)
Q Consensus 293 ~~~~~~~ 299 (338)
+.|+++|
T Consensus 9 Iv~V~vg 15 (38)
T PF02439_consen 9 IVAVVVG 15 (38)
T ss_pred HHHHHHH
Confidence 3333333
No 116
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=22.46 E-value=1e+02 Score=23.62 Aligned_cols=12 Identities=0% Similarity=-0.128 Sum_probs=5.9
Q ss_pred HHhcccHHHHHH
Q 019584 305 IFSTRKYEWLAK 316 (338)
Q Consensus 305 ~~~~~~~~w~~~ 316 (338)
+.+|+.++|-++
T Consensus 106 LLrR~cRr~arr 117 (126)
T PF03229_consen 106 LLRRCCRRAARR 117 (126)
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 117
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=22.03 E-value=1.5e+02 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 019584 11 RHLVLFSFLIFHLAIAHFISSTQPLCHDRERSALLNFKE 49 (338)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~Ll~~~~ 49 (338)
.+++++++++|+..+....+..+....+++.+.+-.-.+
T Consensus 5 ~s~~Lv~~~~~Lvsc~~p~~~~p~tysp~~l~~i~~~~~ 43 (142)
T TIGR03042 5 ASLLLVLLLTFLVSCSGPAAAVPPTYSPAQLAQIQRQAE 43 (142)
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCCCHHHHHHHHHHHH
Confidence 345555555554444445555566677776655544433
No 118
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=21.20 E-value=97 Score=26.66 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.6
Q ss_pred EEeeehh
Q 019584 289 VIGYASG 295 (338)
Q Consensus 289 ~~~~~~~ 295 (338)
++|++.|
T Consensus 40 ~iaiVAG 46 (221)
T PF08374_consen 40 MIAIVAG 46 (221)
T ss_pred eeeeecc
Confidence 3333333
No 119
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.71 E-value=40 Score=22.81 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=6.4
Q ss_pred ehhhHHHHHHHHH
Q 019584 293 ASGTIIGVILGHI 305 (338)
Q Consensus 293 ~~~~~~~~~~~~~ 305 (338)
.+++++|++++++
T Consensus 25 l~~f~~G~llg~l 37 (68)
T PF06305_consen 25 LIAFLLGALLGWL 37 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555553
Done!