Query 019584
Match_columns 338
No_of_seqs 504 out of 3285
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-31 3.7E-36 245.6 16.2 209 35-268 2-218 (313)
2 4eco_A Uncharacterized protein 100.0 2.4E-28 8.3E-33 243.9 14.0 211 38-264 29-347 (636)
3 3rgz_A Protein brassinosteroid 99.9 3.8E-27 1.3E-31 240.1 16.8 213 34-265 7-265 (768)
4 4fcg_A Uncharacterized protein 99.9 5.9E-27 2E-31 215.6 11.7 208 35-266 23-248 (328)
5 4ecn_A Leucine-rich repeat pro 99.9 3.2E-26 1.1E-30 234.4 14.2 204 34-264 264-589 (876)
6 3m19_A Variable lymphocyte rec 99.9 1.4E-23 4.9E-28 185.5 16.5 161 92-263 35-195 (251)
7 2o6q_A Variable lymphocyte rec 99.9 2.7E-22 9.1E-27 179.2 18.9 166 92-268 37-202 (270)
8 3rgz_A Protein brassinosteroid 99.9 3.1E-23 1.1E-27 211.2 13.6 168 92-265 466-722 (768)
9 2o6s_A Variable lymphocyte rec 99.9 2.4E-22 8.4E-27 172.4 14.1 178 77-272 4-190 (208)
10 3e6j_A Variable lymphocyte rec 99.9 1.5E-21 5.1E-26 170.3 16.8 163 75-264 14-176 (229)
11 3rfs_A Internalin B, repeat mo 99.9 1.4E-21 4.9E-26 174.7 16.7 162 91-265 62-223 (272)
12 4fcg_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 183.8 12.6 159 92-265 104-271 (328)
13 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-22 5.1E-27 184.9 9.9 172 91-266 100-287 (313)
14 2o6q_A Variable lymphocyte rec 99.9 4.4E-21 1.5E-25 171.3 16.9 163 91-264 60-222 (270)
15 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-21 2.4E-25 171.1 17.9 167 92-269 32-199 (285)
16 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-21 9E-26 173.9 14.0 164 91-265 55-219 (285)
17 2v70_A SLIT-2, SLIT homolog 2 99.9 4.7E-21 1.6E-25 166.1 14.6 156 96-264 15-170 (220)
18 2v9t_B SLIT homolog 2 protein 99.9 6.4E-21 2.2E-25 165.3 14.3 154 97-264 16-169 (220)
19 2z66_A Variable lymphocyte rec 99.8 5.5E-21 1.9E-25 173.5 13.3 183 78-263 5-215 (306)
20 3v47_A TOLL-like receptor 5B a 99.8 4.2E-21 1.4E-25 183.5 11.7 159 78-246 6-177 (455)
21 2z66_A Variable lymphocyte rec 99.8 7.2E-21 2.5E-25 172.7 12.3 171 91-271 77-247 (306)
22 2xot_A Amphoterin-induced prot 99.8 5.6E-21 1.9E-25 177.8 11.8 176 78-264 16-206 (361)
23 3zyi_A Leucine-rich repeat-con 99.8 3.6E-20 1.2E-24 177.4 16.9 171 92-267 75-262 (452)
24 2z62_A TOLL-like receptor 4, v 99.8 1.3E-20 4.3E-25 168.6 12.8 133 93-236 29-162 (276)
25 3v47_A TOLL-like receptor 5B a 99.8 7.9E-21 2.7E-25 181.6 11.6 139 118-265 275-413 (455)
26 1p9a_G Platelet glycoprotein I 99.8 5.6E-20 1.9E-24 166.0 16.4 155 92-260 31-185 (290)
27 1p9a_G Platelet glycoprotein I 99.8 6.5E-20 2.2E-24 165.6 15.8 160 90-264 53-212 (290)
28 3rfs_A Internalin B, repeat mo 99.8 1.9E-19 6.5E-24 160.9 18.3 165 92-271 41-205 (272)
29 2z80_A TOLL-like receptor 2, v 99.8 1.3E-20 4.6E-25 174.5 11.0 171 76-259 26-210 (353)
30 3m19_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 158.1 18.6 176 78-270 3-178 (251)
31 2id5_A Lingo-1, leucine rich r 99.8 7E-20 2.4E-24 176.3 15.4 172 82-264 13-193 (477)
32 2z62_A TOLL-like receptor 4, v 99.8 8.2E-20 2.8E-24 163.4 14.1 168 91-269 51-222 (276)
33 2o6s_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 152.5 17.0 157 95-265 10-166 (208)
34 3zyj_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 171.7 16.2 175 92-271 64-255 (440)
35 3vq2_A TLR4, TOLL-like recepto 99.8 9.1E-20 3.1E-24 180.5 14.2 164 91-265 31-199 (606)
36 2z81_A CD282 antigen, TOLL-lik 99.8 3.4E-20 1.2E-24 181.4 10.8 173 79-262 3-211 (549)
37 3vq2_A TLR4, TOLL-like recepto 99.8 6.4E-20 2.2E-24 181.6 12.5 165 92-264 376-562 (606)
38 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-19 5.6E-24 178.8 15.3 164 91-265 51-219 (635)
39 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-19 3.6E-24 176.9 13.6 159 92-264 324-485 (520)
40 3zyi_A Leucine-rich repeat-con 99.8 2E-19 6.7E-24 172.3 14.7 171 91-264 98-307 (452)
41 1xku_A Decorin; proteoglycan, 99.8 4.7E-19 1.6E-23 162.5 16.2 192 68-268 19-237 (330)
42 3t6q_A CD180 antigen; protein- 99.8 3.3E-19 1.1E-23 176.5 16.0 167 91-268 32-200 (606)
43 2v9t_B SLIT homolog 2 protein 99.8 3.9E-19 1.3E-23 154.0 14.3 150 77-237 8-166 (220)
44 4ezg_A Putative uncharacterize 99.8 3.6E-19 1.2E-23 151.4 13.5 151 92-261 44-195 (197)
45 2ft3_A Biglycan; proteoglycan, 99.8 5E-19 1.7E-23 162.5 15.4 180 78-268 31-261 (332)
46 3zyj_A Leucine-rich repeat-con 99.8 2.3E-19 7.8E-24 171.2 13.6 168 91-264 111-296 (440)
47 1wwl_A Monocyte differentiatio 99.8 1.4E-19 4.6E-24 165.1 10.8 166 91-267 94-272 (312)
48 2v70_A SLIT-2, SLIT homolog 2 99.8 5.1E-19 1.8E-23 153.2 13.9 154 77-240 8-170 (220)
49 4eco_A Uncharacterized protein 99.8 4.3E-20 1.5E-24 184.3 8.1 164 91-269 205-398 (636)
50 2z63_A TOLL-like receptor 4, v 99.8 1.7E-19 5.8E-24 177.0 11.5 145 114-265 392-536 (570)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.6E-19 8.8E-24 176.0 12.8 161 90-264 351-514 (562)
52 3j0a_A TOLL-like receptor 5; m 99.8 3.8E-19 1.3E-23 182.9 14.2 178 80-269 14-196 (844)
53 3t6q_A CD180 antigen; protein- 99.8 2.2E-19 7.5E-24 177.8 11.7 169 90-266 374-542 (606)
54 1ziw_A TOLL-like receptor 3; i 99.8 7E-19 2.4E-23 176.5 15.4 166 91-267 24-191 (680)
55 2xwt_C Thyrotropin receptor; s 99.8 4E-19 1.4E-23 155.6 11.3 158 91-262 30-195 (239)
56 2id5_A Lingo-1, leucine rich r 99.8 1.1E-18 3.7E-23 168.0 15.2 164 91-265 55-218 (477)
57 1wwl_A Monocyte differentiatio 99.8 2.6E-19 8.7E-24 163.2 10.1 161 91-265 120-291 (312)
58 3oja_B Anopheles plasmodium-re 99.8 6.8E-19 2.3E-23 174.3 13.5 158 93-261 76-292 (597)
59 3o6n_A APL1; leucine-rich repe 99.8 7.1E-19 2.4E-23 165.0 12.0 109 93-213 70-179 (390)
60 4ecn_A Leucine-rich repeat pro 99.8 3.9E-19 1.3E-23 182.1 11.0 164 90-269 446-640 (876)
61 2z63_A TOLL-like receptor 4, v 99.8 1.5E-18 5.1E-23 170.3 14.0 167 91-268 27-198 (570)
62 1w8a_A SLIT protein; signaling 99.8 1.3E-18 4.4E-23 147.5 11.5 159 95-268 11-170 (192)
63 1xku_A Decorin; proteoglycan, 99.8 2.3E-18 7.7E-23 157.9 13.7 171 91-268 99-284 (330)
64 3oja_B Anopheles plasmodium-re 99.8 3.9E-18 1.3E-22 168.9 16.4 169 91-264 98-317 (597)
65 4glp_A Monocyte differentiatio 99.8 7.7E-19 2.6E-23 159.9 10.2 163 92-265 91-268 (310)
66 2z81_A CD282 antigen, TOLL-lik 99.8 1.4E-18 4.9E-23 169.8 12.6 169 91-264 333-514 (549)
67 3o6n_A APL1; leucine-rich repe 99.8 7.8E-18 2.7E-22 157.9 15.9 88 91-182 92-180 (390)
68 2ft3_A Biglycan; proteoglycan, 99.8 5.9E-18 2E-22 155.4 14.4 174 91-269 77-286 (332)
69 1ziw_A TOLL-like receptor 3; i 99.8 5.5E-18 1.9E-22 170.0 15.1 173 91-265 429-627 (680)
70 4g8a_A TOLL-like receptor 4; l 99.8 3.7E-18 1.3E-22 169.0 13.1 162 93-264 421-584 (635)
71 4b8c_D Glucose-repressible alc 99.8 5.6E-19 1.9E-23 178.5 7.1 207 36-269 129-363 (727)
72 2z80_A TOLL-like receptor 2, v 99.8 1.3E-18 4.6E-23 161.0 8.8 164 90-266 74-241 (353)
73 3e6j_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 145.0 14.0 138 91-240 39-176 (229)
74 2xwt_C Thyrotropin receptor; s 99.7 4.7E-18 1.6E-22 148.7 11.0 158 91-262 54-220 (239)
75 4glp_A Monocyte differentiatio 99.7 2.4E-18 8.1E-23 156.6 9.1 161 91-261 116-286 (310)
76 2wfh_A SLIT homolog 2 protein 99.7 1.1E-17 3.7E-22 142.0 12.5 126 96-236 14-139 (193)
77 2z7x_B TOLL-like receptor 1, v 99.7 2E-17 6.9E-22 160.8 14.8 155 95-269 3-162 (520)
78 3j0a_A TOLL-like receptor 5; m 99.7 1E-17 3.5E-22 172.3 13.3 168 90-267 46-224 (844)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2E-17 7E-22 162.4 14.8 139 115-266 350-491 (562)
80 1h6u_A Internalin H; cell adhe 99.7 4.9E-17 1.7E-21 147.9 15.7 152 92-261 63-231 (308)
81 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.6E-22 153.5 13.4 164 78-262 10-178 (361)
82 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-17 3.8E-22 152.7 10.8 132 117-261 119-251 (317)
83 1w8a_A SLIT protein; signaling 99.7 3.4E-17 1.2E-21 138.7 12.9 112 93-214 30-141 (192)
84 1h6t_A Internalin B; cell adhe 99.7 9.6E-17 3.3E-21 144.8 16.2 148 91-261 67-214 (291)
85 2ell_A Acidic leucine-rich nuc 99.7 1.9E-17 6.5E-22 136.9 10.6 134 118-261 24-161 (168)
86 1h6t_A Internalin B; cell adhe 99.7 4.6E-17 1.6E-21 146.9 14.0 148 92-262 46-193 (291)
87 2ell_A Acidic leucine-rich nuc 99.7 3.4E-17 1.1E-21 135.4 11.8 139 91-242 23-165 (168)
88 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.9E-21 145.5 16.2 147 92-261 41-187 (308)
89 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.2E-22 161.3 10.4 135 116-263 118-253 (487)
90 2o6r_A Variable lymphocyte rec 99.7 6.1E-17 2.1E-21 135.0 12.9 112 118-238 28-139 (177)
91 2je0_A Acidic leucine-rich nuc 99.7 2.4E-17 8.3E-22 133.5 9.6 130 117-256 16-149 (149)
92 3o53_A Protein LRIM1, AGAP0063 99.7 9.8E-18 3.4E-22 153.0 7.4 161 91-269 57-235 (317)
93 1xeu_A Internalin C; cellular 99.7 8.8E-17 3E-21 143.0 13.1 147 92-262 41-187 (263)
94 3oja_A Leucine-rich immune mol 99.7 1.8E-17 6.3E-22 160.1 9.2 170 80-265 109-287 (487)
95 3cvr_A Invasion plasmid antige 99.7 5.4E-17 1.8E-21 159.2 11.3 144 81-260 49-193 (571)
96 2ast_B S-phase kinase-associat 99.7 7.2E-18 2.5E-22 154.6 4.3 163 92-264 70-240 (336)
97 4fmz_A Internalin; leucine ric 99.7 2.5E-16 8.4E-21 145.1 14.5 153 91-264 176-328 (347)
98 4b8c_D Glucose-repressible alc 99.7 9.5E-18 3.3E-22 169.6 5.5 147 90-257 222-369 (727)
99 4fmz_A Internalin; leucine ric 99.7 4.3E-16 1.5E-20 143.4 15.6 153 91-266 154-306 (347)
100 2je0_A Acidic leucine-rich nuc 99.7 4.4E-17 1.5E-21 132.0 7.8 129 92-232 17-149 (149)
101 1m9s_A Internalin B; cell inva 99.7 3.6E-16 1.2E-20 154.6 15.5 149 91-262 64-212 (605)
102 2ast_B S-phase kinase-associat 99.7 7.9E-18 2.7E-22 154.4 3.2 157 92-258 93-258 (336)
103 4ezg_A Putative uncharacterize 99.7 1.5E-16 5.1E-21 135.1 10.5 134 113-261 39-173 (197)
104 1m9s_A Internalin B; cell inva 99.7 4.5E-16 1.5E-20 154.0 14.7 149 91-262 42-190 (605)
105 1o6v_A Internalin A; bacterial 99.7 1.1E-15 3.9E-20 146.6 16.4 150 92-264 221-370 (466)
106 2ca6_A RAN GTPase-activating p 99.7 1.4E-17 4.7E-22 156.1 2.3 169 92-264 122-320 (386)
107 1o6v_A Internalin A; bacterial 99.7 9.2E-16 3.1E-20 147.3 14.0 148 91-261 242-389 (466)
108 1xeu_A Internalin C; cellular 99.6 7.7E-16 2.6E-20 136.8 11.7 146 93-262 20-165 (263)
109 2wfh_A SLIT homolog 2 protein 99.6 1.9E-15 6.4E-20 128.1 13.6 131 121-264 13-143 (193)
110 3cvr_A Invasion plasmid antige 99.6 5.3E-16 1.8E-20 152.1 11.4 143 92-266 100-249 (571)
111 2ca6_A RAN GTPase-activating p 99.6 2.6E-17 9E-22 154.1 2.0 68 194-261 211-288 (386)
112 2o6r_A Variable lymphocyte rec 99.6 2.7E-15 9.2E-20 125.0 13.7 114 143-264 28-141 (177)
113 4ay9_X Follicle-stimulating ho 99.6 7.1E-16 2.4E-20 142.7 10.7 181 79-264 8-219 (350)
114 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.5E-20 127.6 10.4 132 113-260 14-153 (176)
115 3goz_A Leucine-rich repeat-con 99.6 7.4E-17 2.5E-21 149.9 3.8 165 93-264 52-242 (362)
116 1dce_A Protein (RAB geranylger 99.6 1.6E-17 5.5E-22 163.2 -0.9 156 92-264 349-550 (567)
117 3goz_A Leucine-rich repeat-con 99.6 1.1E-16 3.6E-21 148.9 4.3 163 92-261 80-267 (362)
118 3bz5_A Internalin-J, INLJ; leu 99.6 3.8E-15 1.3E-19 142.7 15.1 143 92-262 64-206 (457)
119 3bz5_A Internalin-J, INLJ; leu 99.6 9.5E-15 3.2E-19 140.0 16.8 144 91-263 84-249 (457)
120 3g39_A Variable lymphocyte rec 99.6 3E-15 1E-19 124.2 11.3 106 120-237 11-116 (170)
121 1ds9_A Outer arm dynein; leuci 99.6 1E-17 3.6E-22 142.4 -6.2 152 93-260 19-185 (198)
122 2r9u_A Variable lymphocyte rec 99.6 9.8E-15 3.3E-19 121.6 11.3 104 121-236 15-118 (174)
123 1a9n_A U2A', U2A'; complex (nu 99.6 6E-15 2E-19 122.9 8.5 129 92-237 19-154 (176)
124 1dce_A Protein (RAB geranylger 99.6 1.7E-14 6E-19 141.6 12.5 122 119-254 442-567 (567)
125 1z7x_W Ribonuclease inhibitor; 99.6 3.2E-16 1.1E-20 149.8 0.1 71 191-261 333-412 (461)
126 3g06_A SSPH2 (leucine-rich rep 99.5 7.4E-15 2.5E-19 145.6 8.7 97 67-180 12-114 (622)
127 3g06_A SSPH2 (leucine-rich rep 99.5 2.6E-14 8.9E-19 141.6 12.5 105 143-265 181-302 (622)
128 1ds9_A Outer arm dynein; leuci 99.5 5.2E-17 1.8E-21 138.1 -6.5 139 114-265 14-158 (198)
129 1jl5_A Outer protein YOPM; leu 99.5 7.8E-14 2.7E-18 133.5 14.4 77 93-180 132-208 (454)
130 1jl5_A Outer protein YOPM; leu 99.5 1.1E-13 3.7E-18 132.5 13.9 141 92-261 111-251 (454)
131 1z7x_W Ribonuclease inhibitor; 99.5 2.2E-15 7.4E-20 143.9 1.3 164 92-261 28-213 (461)
132 3un9_A NLR family member X1; l 99.5 8.9E-16 3.1E-20 143.2 -1.4 166 92-263 72-255 (372)
133 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 114.4 11.4 105 96-214 13-117 (170)
134 2r9u_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 112.8 11.8 106 95-214 15-120 (174)
135 2ifg_A High affinity nerve gro 99.4 3.4E-13 1.1E-17 124.2 10.0 134 121-266 11-147 (347)
136 2ifg_A High affinity nerve gro 99.4 1.1E-12 3.9E-17 120.7 9.3 109 80-214 8-118 (347)
137 4ay9_X Follicle-stimulating ho 99.3 3.3E-12 1.1E-16 117.9 10.6 160 85-265 7-195 (350)
138 3un9_A NLR family member X1; l 99.3 3.2E-13 1.1E-17 125.9 1.3 148 92-246 101-262 (372)
139 3sb4_A Hypothetical leucine ri 99.2 4.6E-11 1.6E-15 109.2 10.4 63 91-156 48-137 (329)
140 3ogk_B Coronatine-insensitive 99.2 1.7E-12 5.6E-17 127.8 0.6 132 92-230 112-250 (592)
141 3ogk_B Coronatine-insensitive 99.2 1.9E-12 6.4E-17 127.4 -0.5 170 92-262 293-528 (592)
142 2p1m_B Transport inhibitor res 99.1 2.5E-11 8.5E-16 119.3 1.7 109 92-209 105-221 (594)
143 3sb4_A Hypothetical leucine ri 99.0 6.7E-10 2.3E-14 101.4 9.9 164 92-269 101-319 (329)
144 2p1m_B Transport inhibitor res 99.0 2E-11 6.8E-16 120.0 -1.1 115 142-260 371-494 (594)
145 3rw6_A Nuclear RNA export fact 98.9 1.3E-11 4.3E-16 109.3 -6.0 97 148-253 148-257 (267)
146 2ra8_A Uncharacterized protein 98.9 5.1E-10 1.8E-14 103.6 3.7 160 92-261 139-321 (362)
147 1io0_A Tropomodulin; LRR prote 98.9 6.2E-10 2.1E-14 93.2 3.8 66 115-180 33-106 (185)
148 1io0_A Tropomodulin; LRR prote 98.8 4E-10 1.4E-14 94.4 0.5 120 137-260 30-164 (185)
149 2ra8_A Uncharacterized protein 98.6 1.5E-08 5.1E-13 93.8 4.3 152 91-258 171-341 (362)
150 3rw6_A Nuclear RNA export fact 98.5 2.1E-08 7.2E-13 88.5 2.0 82 140-229 167-257 (267)
151 4fdw_A Leucine rich hypothetic 98.5 8.3E-07 2.8E-11 83.2 12.9 159 92-261 180-359 (401)
152 4fdw_A Leucine rich hypothetic 98.4 1.6E-06 5.6E-11 81.2 11.9 157 93-257 158-333 (401)
153 3e4g_A ATP synthase subunit S, 98.0 2E-06 6.9E-11 70.8 3.3 87 142-236 60-153 (176)
154 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 9E-11 70.1 4.0 88 117-213 60-154 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.9 8.1E-06 2.8E-10 68.4 4.9 90 163-256 66-166 (197)
156 1pgv_A TMD-1, tropomodulin TMD 97.8 1.2E-05 4.1E-10 67.3 3.2 117 116-236 39-170 (197)
157 3rfe_A Platelet glycoprotein I 97.7 4.7E-05 1.6E-09 59.5 6.2 60 203-264 12-72 (130)
158 4gt6_A Cell surface protein; l 97.5 0.00062 2.1E-08 63.2 10.6 129 113-257 260-388 (394)
159 4fs7_A Uncharacterized protein 97.3 0.0012 3.9E-08 61.3 10.0 146 93-257 231-376 (394)
160 4h09_A Hypothetical leucine ri 97.2 0.0022 7.6E-08 58.9 11.4 132 113-257 212-343 (379)
161 4fs7_A Uncharacterized protein 97.2 0.002 6.7E-08 59.8 10.8 127 115-257 227-353 (394)
162 4gt6_A Cell surface protein; l 97.0 0.0031 1.1E-07 58.4 9.7 109 138-258 260-368 (394)
163 4h09_A Hypothetical leucine ri 96.9 0.0059 2E-07 56.0 10.7 121 113-246 235-355 (379)
164 3rfe_A Platelet glycoprotein I 96.4 0.0053 1.8E-07 47.6 5.8 36 144-179 32-67 (130)
165 2k1k_A Ephrin type-A receptor 42.2 4 0.00014 23.8 -0.5 10 290-299 14-23 (38)
166 2lz0_A Uncharacterized protein 26.8 76 0.0026 22.5 4.1 38 138-176 15-52 (100)
167 2lz0_A Uncharacterized protein 26.4 87 0.003 22.2 4.4 40 216-256 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-31 Score=245.61 Aligned_cols=209 Identities=31% Similarity=0.477 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcc--cceeEEcCCC--CcEEEEEeCCCCcee--ec
Q 019584 35 LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCS--WDGVKCNEDT--GHVVELDLASSCLYG--SI 108 (338)
Q Consensus 35 ~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~l~~L~Ls~n~l~~--~~ 108 (338)
.|.++|++||++||+++.++. .+.+|. .+.+||. |.||.|+... ++|+.|+|++|.+.+ .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~----------~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT----------TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG----------GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc----------cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc
Confidence 599999999999999996432 568897 4568898 9999998654 799999999999998 78
Q ss_pred CCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccccc
Q 019584 109 NSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQ 187 (338)
Q Consensus 109 ~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~ 187 (338)
+. .+.++++|++|++++ |.+.+. +|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.++
T Consensus 69 ~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------- 138 (313)
T 1ogq_A 69 PS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------- 138 (313)
T ss_dssp CG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred Ch--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence 87 999999999999995 888876 8999999999999999999999999999999999999999999954
Q ss_pred CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCC-CCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 188 KPGLANLAENLTNLKALDLINVHISSTVPHTLANLS-SLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
+.+|..+..+++|++|++++|.+++.+|..++.++ +|++|++++|++++.+|..+..++ |++|++++|.+++..|..
T Consensus 139 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 139 -GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp -SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGG
T ss_pred -CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHH
Confidence 56788888889999999999998888888888887 888888888888877777777765 777777777777666554
Q ss_pred CC
Q 019584 267 EA 268 (338)
Q Consensus 267 ~~ 268 (338)
+.
T Consensus 217 ~~ 218 (313)
T 1ogq_A 217 FG 218 (313)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.4e-28 Score=243.93 Aligned_cols=211 Identities=19% Similarity=0.244 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCccc---ceeEEcCCCCcEEEEEeCCCCceeecCCCCcc
Q 019584 38 DRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSW---DGVKCNEDTGHVVELDLASSCLYGSINSTSSL 114 (338)
Q Consensus 38 ~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l 114 (338)
.+|+.||.+++++++++.|.. ....++...+|+ .+.++|.| .||.|+.. ++|+.|+|+++++.|.+|+ .+
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~-~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~--~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQ-QGFGTQPGANWN---FNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD--AI 101 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCC-CC------CCCC---CSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG--GG
T ss_pred HHHHHHHHHHHHHcCCCCccc-CCcCCccCCCCC---CCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh--HH
Confidence 469999999999999887642 223455667898 56889999 99999765 7999999999999999998 99
Q ss_pred ccCcCccEEEccCCCC------CC--------------------------------------------------------
Q 019584 115 FQLVHLQRLSLFDNNF------NF-------------------------------------------------------- 132 (338)
Q Consensus 115 ~~l~~L~~L~L~~n~l------~~-------------------------------------------------------- 132 (338)
+++++|++|+|++|.+ .+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999999954 00
Q ss_pred --------------CCCchhhhcCCCCcEEEcccccCccc-----------------cchhhc--CCCCCCEEEccCCCC
Q 019584 133 --------------SEIPSAILNFSRLTHLNLSQSYFSGQ-----------------IPAELL--ELSNLEVLDLSYSNF 179 (338)
Q Consensus 133 --------------~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N~l 179 (338)
..+|..++++++|++|+|++|.+++. +|..++ ++++|++|++++|++
T Consensus 182 ~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp CCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred chhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 01678899999999999999999985 999998 999999999999996
Q ss_pred CcccccccCCCcchhhcCCCCCCEEEccCCC-CCC-CCchhcccC------CCCCeeecccccCcccCch--hccCCCCC
Q 019584 180 DTFYLKLQKPGLANLAENLTNLKALDLINVH-ISS-TVPHTLANL------SSLRFSSLSGCRLQGEFPQ--EIFQLPNL 249 (338)
Q Consensus 180 ~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~--~l~~l~~L 249 (338)
. +.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+..+++|
T Consensus 262 ~--------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 262 L--------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp C--------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred C--------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 5 6788899999999999999998 888 788888876 89999999999999 8888 88999999
Q ss_pred CeeeccCCCCCCcCC
Q 019584 250 QFLGLCGGPLSKKCN 264 (338)
Q Consensus 250 ~~L~l~~N~l~~~~p 264 (338)
++|++++|.++|.+|
T Consensus 333 ~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 333 GMLECLYNQLEGKLP 347 (636)
T ss_dssp CEEECCSCCCEEECC
T ss_pred CEEeCcCCcCccchh
Confidence 999999999998888
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=3.8e-27 Score=240.12 Aligned_cols=213 Identities=26% Similarity=0.380 Sum_probs=159.4
Q ss_pred CCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEeCCCCceee---cCC
Q 019584 34 PLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDLASSCLYGS---INS 110 (338)
Q Consensus 34 ~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~---~~~ 110 (338)
....++|++||++||+++.++. .+.+|. .+.+||.|.||.|+ .++|+.|||+++.+.|. +++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~----------~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~ 71 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN----------LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSS 71 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT----------SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhCCCcc----------cccCCC---CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccCh
Confidence 3346789999999999987432 578997 56789999999998 47999999999998886 321
Q ss_pred ---------------------CCccccCcCccEEEccCCCCCCCCCch--hhhcCCCCcEEEcccccCccccchhh-cCC
Q 019584 111 ---------------------TSSLFQLVHLQRLSLFDNNFNFSEIPS--AILNFSRLTHLNLSQSYFSGQIPAEL-LEL 166 (338)
Q Consensus 111 ---------------------~~~l~~l~~L~~L~L~~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l 166 (338)
+..+..+++|++|+|++|.+++. +|. .+.++++|++|++++|.+.+.+|..+ ..+
T Consensus 72 ~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred hHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 12677889999999999998765 777 88899999999999999888777765 678
Q ss_pred CCCCEEEccCCCCCccccc---------------ccC----CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584 167 SNLEVLDLSYSNFDTFYLK---------------LQK----PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227 (338)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~l~---------------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 227 (338)
++|++|++++|++++.... +.. +.. .+..+++|++|++++|.+++.+|. ++++++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCE
Confidence 8888888888876532100 000 011 124567777777777777776665 777778888
Q ss_pred eecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
|++++|.+++.+|..+..+++|++|++++|.+++.+|.
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 265 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc
Confidence 88888887777777777777777777777777766654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.9e-27 Score=215.59 Aligned_cols=208 Identities=21% Similarity=0.302 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCC-CCCCCCcccceeEEc--------CCCCcEEEEEeCCCCce
Q 019584 35 LCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPD-EKNKDCCSWDGVKCN--------EDTGHVVELDLASSCLY 105 (338)
Q Consensus 35 ~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~--------~~~~~l~~L~Ls~n~l~ 105 (338)
.+..+|+.||++||+.+..+... ....|..+ ....++|.|.|+.|. ....+++.|+|++|.++
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~--------~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~ 94 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNR--------WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTT--------HHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS
T ss_pred ccCchHHHHHHHHHHhccCCchh--------hhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch
Confidence 35568999999999988543321 45678311 146788999999994 23468999999999988
Q ss_pred eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccc
Q 019584 106 GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLK 185 (338)
Q Consensus 106 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~ 185 (338)
.+|. .+.++++|++|++++|.++ . +|..+.++++|++|+|++|.++ .+|..+..+++|++|++++|++.
T Consensus 95 -~lp~--~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~----- 163 (328)
T 4fcg_A 95 -QFPD--QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL----- 163 (328)
T ss_dssp -SCCS--CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-----
T ss_pred -hcCh--hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-----
Confidence 6666 7888999999999999987 3 8888888999999999999888 78888888888999999887643
Q ss_pred ccCCCcchhhc---------CCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584 186 LQKPGLANLAE---------NLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256 (338)
Q Consensus 186 ~~~~~~~~~~~---------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 256 (338)
+.+|..+. .+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++
T Consensus 164 ---~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 164 ---TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ---CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTT
T ss_pred ---cccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcC
Confidence 22333222 2445555555555544 34444444445555555555444 2333444444444444444
Q ss_pred CCCCCcCCCC
Q 019584 257 GPLSKKCNNS 266 (338)
Q Consensus 257 N~l~~~~p~~ 266 (338)
|.+.+.+|..
T Consensus 239 n~~~~~~p~~ 248 (328)
T 4fcg_A 239 CTALRNYPPI 248 (328)
T ss_dssp CTTCCBCCCC
T ss_pred CcchhhhHHH
Confidence 4444444443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.2e-26 Score=234.38 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=161.6
Q ss_pred CCCCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCC----CCCCCccc------------ceeEEcCCCCcEEEE
Q 019584 34 PLCHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDE----KNKDCCSW------------DGVKCNEDTGHVVEL 97 (338)
Q Consensus 34 ~~~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~c~w------------~gv~c~~~~~~l~~L 97 (338)
+.+..+|+.||++||+++.++ +|+.+. ..+++|.| .||.|+. .++|+.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~--------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L 328 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK--------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGL 328 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG--------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEE
T ss_pred cccchHHHHHHHHHHHHcCCC--------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEE
Confidence 345568999999999999754 444221 12234999 9999986 4799999
Q ss_pred EeCCCCceeecCCCCccccCcCccEEEc-cCCCCCCC-------------------------------------------
Q 019584 98 DLASSCLYGSINSTSSLFQLVHLQRLSL-FDNNFNFS------------------------------------------- 133 (338)
Q Consensus 98 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------- 133 (338)
+|+++++.|.+|+ .++++++|+.|+| ++|.+++.
T Consensus 329 ~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 329 SLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp ECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred ECccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 9999999999998 9999999999999 77743221
Q ss_pred --------------------------------CCchhhhcCCCCcEEEcccccCcc-----------------ccchhhc
Q 019584 134 --------------------------------EIPSAILNFSRLTHLNLSQSYFSG-----------------QIPAELL 164 (338)
Q Consensus 134 --------------------------------~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~ 164 (338)
.+|..+.++++|++|+|++|.+++ .+|..++
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 067889999999999999999997 3899887
Q ss_pred --CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCC-CCchhcccCC-------CCCeeecccc
Q 019584 165 --ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISS-TVPHTLANLS-------SLRFSSLSGC 233 (338)
Q Consensus 165 --~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~-------~L~~L~Ls~N 233 (338)
.+++|++|+|++|++. +.+|..+.++++|++|++++|+ +++ .+|..++.++ +|++|+|++|
T Consensus 487 f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNM--------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GGGCTTCCEEEEESCTTC--------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred hccCCCCCEEECcCCCCC--------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 9999999999999854 5777888888888888888887 776 6776665554 7777777777
Q ss_pred cCcccCch--hccCCCCCCeeeccCCCCCCcCC
Q 019584 234 RLQGEFPQ--EIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 234 ~l~~~~p~--~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
+++ .+|. .+..+++|+.|++++|.++ .+|
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 777 6776 7777777777777777777 566
No 6
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.4e-23 Score=185.48 Aligned_cols=161 Identities=22% Similarity=0.210 Sum_probs=136.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|+|++|.+.+..+. .+.++++|++|++++|.++.. .+..+.++++|++|+|++|.+++..+..+..+++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHh--HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 4688899999999887766 788899999999999999865 6677888999999999999999666667788999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|+++ ...+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.
T Consensus 112 L~L~~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 112 LYLGGNQLK--------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp EECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EEcCCCcCC--------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 999999865 334455788899999999999998776667888999999999999999776678888999999
Q ss_pred eeccCCCCCCcC
Q 019584 252 LGLCGGPLSKKC 263 (338)
Q Consensus 252 L~l~~N~l~~~~ 263 (338)
|++++|++.|.+
T Consensus 184 L~l~~N~~~c~~ 195 (251)
T 3m19_A 184 ITLFGNQFDCSR 195 (251)
T ss_dssp EECCSCCBCTTS
T ss_pred EEeeCCceeCCc
Confidence 999999999873
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.7e-22 Score=179.23 Aligned_cols=166 Identities=20% Similarity=0.170 Sum_probs=131.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+++..+. .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 3578888888888866655 788899999999999988743 4445678899999999999998655566788899999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 114 L~l~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 114 LRLDRNQLK--------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp EECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EECCCCccC--------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 999999865 344556788899999999999988766666888899999999999998666666888889999
Q ss_pred eeccCCCCCCcCCCCCC
Q 019584 252 LGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 252 L~l~~N~l~~~~p~~~~ 268 (338)
|++++|.+++..+..+.
T Consensus 186 L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp EECCSSCCSCCCTTTTT
T ss_pred EECCCCcCCcCCHHHhc
Confidence 99999988865444343
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3.1e-23 Score=211.23 Aligned_cols=168 Identities=30% Similarity=0.351 Sum_probs=116.5
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
++++.|++++|.+.+.+|. .+.++++|++|++++|++++. +|..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp TTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CCceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 5678888888888877777 777888888888888888765 7777888888888888888888778877777777888
Q ss_pred EEccCCCCCcc-c-------------------------------------------------------------------
Q 019584 172 LDLSYSNFDTF-Y------------------------------------------------------------------- 183 (338)
Q Consensus 172 L~Ls~N~l~~~-~------------------------------------------------------------------- 183 (338)
|++++|++++. +
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 77777765410 0
Q ss_pred ---------------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh
Q 019584 184 ---------------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE 242 (338)
Q Consensus 184 ---------------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 242 (338)
++ +.+|..++++++|++|++++|+++|.+|..++++++|++|||++|+++|.+|..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~---g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCB---SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred cCchhhhccccccEEECcCCccc---ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 01 345555566666666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCeeeccCCCCCCcCCC
Q 019584 243 IFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 243 l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+..+++|++|++++|+++|.+|.
T Consensus 700 l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGCCCCSEEECCSSEEEEECCS
T ss_pred HhCCCCCCEEECcCCcccccCCC
Confidence 66666666666666666666664
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.4e-22 Score=172.38 Aligned_cols=178 Identities=23% Similarity=0.251 Sum_probs=145.7
Q ss_pred CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
...|.|.++.|... ..++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+..+++|++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTY 80 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCE
Confidence 34589999999642 34689999999999866555 678899999999999999853 4556788999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 227 (338)
|++++|.+++..+..+..+++|++|++++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCc--------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 999999999655556789999999999999865 334456788999999999999999766667888999999
Q ss_pred eecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCCCCC
Q 019584 228 SSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPPE 272 (338)
Q Consensus 228 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~~ 272 (338)
|++++|.+.+ .+++|+.|+++.|.++|.+|++.+..+.
T Consensus 153 L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 153 IWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9999998774 3457899999999999999988776544
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=1.5e-21 Score=170.31 Aligned_cols=163 Identities=21% Similarity=0.271 Sum_probs=133.7
Q ss_pred CCCCCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc
Q 019584 75 KNKDCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY 154 (338)
Q Consensus 75 ~~~~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~ 154 (338)
.+.+.|+|.++.|... +++ .+|. .+ .++|++|+|++|.++.. .|..+.++++|++|+|++|.
T Consensus 14 ~~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CTTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCC
Confidence 3567899999999642 232 2333 23 37899999999999875 67888999999999999999
Q ss_pred CccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 155 FSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 155 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
++...+..+..+++|++|+|++|+++ ...+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~--------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLT--------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred CCCcChhhcccCCCcCEEECCCCcCC--------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence 98544456788999999999999965 334556788999999999999998 688889999999999999999
Q ss_pred CcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
+++..+..+..+++|+.|++++|++.|.|+
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 996666678889999999999999999886
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.4e-21 Score=174.72 Aligned_cols=162 Identities=23% Similarity=0.230 Sum_probs=141.7
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.+++++|++++|.+.+. + .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--S--ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp CTTCCEEECTTSCCCCC--G--GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEECCCCCCCCc--h--hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 46899999999998863 3 688999999999999999864 566689999999999999999976666789999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|+++ ...+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+
T Consensus 137 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 137 YLNLAHNQLQ--------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCccC--------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 9999999965 34455678999999999999999987777789999999999999999987777788999999
Q ss_pred eeeccCCCCCCcCCC
Q 019584 251 FLGLCGGPLSKKCNN 265 (338)
Q Consensus 251 ~L~l~~N~l~~~~p~ 265 (338)
.|++++|++.|.||.
T Consensus 209 ~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 209 YIWLHDNPWDCTCPG 223 (272)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEccCCCccccCcH
Confidence 999999999999883
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3.3e-22 Score=183.81 Aligned_cols=159 Identities=23% Similarity=0.334 Sum_probs=94.1
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcC------
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLE------ 165 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~------ 165 (338)
.++++|+|++|.++ .+|. .+.++++|++|++++|.++ . +|..+.++++|++|++++|.+.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~--~~~~l~~L~~L~Ls~n~l~-~-lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPD--TMQQFAGLETLTLARNPLR-A-LPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp TTCSEEEEESSCCC-CCCS--CGGGGTTCSEEEEESCCCC-C-CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred CCCCEEECCCCCcc-chhH--HHhccCCCCEEECCCCccc-c-CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 46777777777777 5665 6777777777777777776 3 6777777777777777777666666665543
Q ss_pred ---CCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh
Q 019584 166 ---LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE 242 (338)
Q Consensus 166 ---l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 242 (338)
+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..
T Consensus 179 ~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence 666777777666653 233444444455555555544443 3334444444444444444444444444
Q ss_pred ccCCCCCCeeeccCCCCCCcCCC
Q 019584 243 IFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 243 l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+..+++|++|++++|.+.+.+|.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCT
T ss_pred hcCCCCCCEEECCCCCchhhcch
Confidence 44444444444444444444443
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.5e-22 Score=184.89 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=133.4
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCC-CC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELS-NL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L 169 (338)
..++++|++++|.+++.+|. .+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|..+..++ +|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp CTTCSEEEEEEECCEEECCG--GGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred CCCCCEEECcCCeeCCcCCH--HHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 46789999999999988888 899999999999999999865 888999999999999999999989999998887 89
Q ss_pred CEEEccCCCCCccc-----------cccc----CCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 170 EVLDLSYSNFDTFY-----------LKLQ----KPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~-----------l~~~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
++|++++|++++.. +.+. .+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|+
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 99999999865210 0000 023455566677777777777777654444 6667777777777777
Q ss_pred CcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
+++.+|..+..+++|++|++++|+++|.+|..
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 77777777777777777777777777777764
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.4e-21 Score=171.27 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=143.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++++|++++|.++...+. .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAG--IFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTT--TTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCeeChh--hhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 46899999999999865544 678899999999999999864 556778999999999999999977777789999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+
T Consensus 137 ~L~Ls~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 137 YLSLGYNELQ--------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp EEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCcCC--------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 9999999975 23345578999999999999999987777799999999999999999966666788899999
Q ss_pred eeeccCCCCCCcCC
Q 019584 251 FLGLCGGPLSKKCN 264 (338)
Q Consensus 251 ~L~l~~N~l~~~~p 264 (338)
.|++++|++.|.|+
T Consensus 209 ~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 209 MLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCBCCSSS
T ss_pred EEEecCCCeeCCCc
Confidence 99999999999886
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=7.1e-21 Score=171.11 Aligned_cols=167 Identities=19% Similarity=0.142 Sum_probs=111.5
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-CccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~ 170 (338)
.+++.|++++|.+++..+. .+..+++|++|++++|.++.. .|..+.++++|++|++++|. ++...|..+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHH--HcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 4677777777777766555 667777777777777777643 46667777777777777776 6644466677777777
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.++ ...+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|+
T Consensus 109 ~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 109 TLHLDRCGLQ--------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp EEECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred EEECCCCcCC--------EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 7777777754 23345566667777777777777665555566667777777777776644444566666777
Q ss_pred eeeccCCCCCCcCCCCCCC
Q 019584 251 FLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 251 ~L~l~~N~l~~~~p~~~~~ 269 (338)
+|++++|.+++..|..+..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~ 199 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRD 199 (285)
T ss_dssp EEECCSSCCCEECTTTTTT
T ss_pred EEECCCCcccccCHhHccC
Confidence 7777777666665554443
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=2.6e-21 Score=173.92 Aligned_cols=164 Identities=24% Similarity=0.196 Sum_probs=135.2
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
..+++.|++++|.+++..+. .+..+++|++|++++|. ++.. .|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCCEEECCCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 46899999999999887777 88889999999999997 6543 57788889999999999999997777788889999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
++|++++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 132 ~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 132 QYLYLQDNALQ--------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp CEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEECCCCccc--------ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 99999999865 2334557788888888888888886555668888888888888888887778888888888
Q ss_pred CeeeccCCCCCCcCCC
Q 019584 250 QFLGLCGGPLSKKCNN 265 (338)
Q Consensus 250 ~~L~l~~N~l~~~~p~ 265 (338)
+.|++++|.+++..|.
T Consensus 204 ~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 204 MTLYLFANNLSALPTE 219 (285)
T ss_dssp CEEECCSSCCSCCCHH
T ss_pred cEeeCCCCcCCcCCHH
Confidence 8888888888875443
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=166.14 Aligned_cols=156 Identities=21% Similarity=0.251 Sum_probs=134.7
Q ss_pred EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584 96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175 (338)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 175 (338)
.+++++|.++. +|. .+ ...++.|++++|.++....+..+..+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 67777888764 444 33 34578999999999864223458899999999999999997777789999999999999
Q ss_pred CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeecc
Q 019584 176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLC 255 (338)
Q Consensus 176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 255 (338)
+|+++ ...+..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 90 ~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLE--------NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCC--------CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCccC--------ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 99975 4556678999999999999999999889999999999999999999998889999999999999999
Q ss_pred CCCCCCcCC
Q 019584 256 GGPLSKKCN 264 (338)
Q Consensus 256 ~N~l~~~~p 264 (338)
+|++.|.|+
T Consensus 162 ~N~l~c~c~ 170 (220)
T 2v70_A 162 ANPFNCNCY 170 (220)
T ss_dssp SCCEECSGG
T ss_pred CcCCcCCCc
Confidence 999999887
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=6.4e-21 Score=165.27 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=129.4
Q ss_pred EEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC
Q 019584 97 LDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176 (338)
Q Consensus 97 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (338)
+++++++++. +|. .+. ++|+.|++++|.++.. .+..+..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus 16 v~c~~~~l~~-iP~--~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 16 VDCRGKGLTE-IPT--NLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EECTTSCCSS-CCS--SCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EEcCCCCcCc-CCC--ccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4445555553 333 332 6899999999999854 555789999999999999999977788999999999999999
Q ss_pred CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584 177 SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256 (338)
Q Consensus 177 N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 256 (338)
|+++ ...+..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++
T Consensus 90 N~l~--------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKIT--------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCC--------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 9975 23345578899999999999999998889999999999999999999977777788999999999999
Q ss_pred CCCCCcCC
Q 019584 257 GPLSKKCN 264 (338)
Q Consensus 257 N~l~~~~p 264 (338)
|++.|.|+
T Consensus 162 N~~~c~c~ 169 (220)
T 2v9t_B 162 NPFICDCH 169 (220)
T ss_dssp SCEECSGG
T ss_pred CCcCCCCc
Confidence 99999775
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=5.5e-21 Score=173.52 Aligned_cols=183 Identities=23% Similarity=0.349 Sum_probs=117.0
Q ss_pred CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcE
Q 019584 78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTH 147 (338)
Q Consensus 78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~ 147 (338)
..|.|.++.|... ..++++|++++|.++...+. .+.++++|++|++++|.++.. ..+..+..+++|++
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 4489999999642 35799999999999854444 578999999999999998632 12567777888888
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccc-c------------ccC----CCcchhhcCCCCCCEEEccCCC
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYL-K------------LQK----PGLANLAENLTNLKALDLINVH 210 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l-~------------~~~----~~~~~~~~~l~~L~~L~Ls~N~ 210 (338)
|++++|.++ .+|..+..+++|++|++++|++++... . +.. ...+..+..+++|++|++++|.
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 888888887 566667778888888888877543110 0 000 1122334444555555555555
Q ss_pred CCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584 211 ISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 211 l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 543 34445555555555555555555444555555555666666665555533
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=4.2e-21 Score=183.51 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=133.9
Q ss_pred CCcccce--eEEcCC--------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 78 DCCSWDG--VKCNED--------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 78 ~~c~w~g--v~c~~~--------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
..|.|.+ +.|... +.++++|+|++|.+++..+. .+.++++|++|++++|.+.+...+..+.++++|++
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~ 83 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLII 83 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccCCE
Confidence 4455544 778643 25799999999999988777 89999999999999999875424677999999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchh--hcCCCCCCEEEccCCCCCCCCchh-cccCCC
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL--AENLTNLKALDLINVHISSTVPHT-LANLSS 224 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 224 (338)
|+|++|.+++..|..+..+++|++|++++|+++ +..+.. +..+++|++|++++|.+++..|.. +..+++
T Consensus 84 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD--------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp EECTTCTTCEECTTTTTTCTTCCEEECTTSCCB--------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred EeCCCCccCccChhhccCcccCCEEeCCCCCCC--------ccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 999999999888999999999999999999965 333443 889999999999999999887776 889999
Q ss_pred CCeeecccccCcccCchhccCC
Q 019584 225 LRFSSLSGCRLQGEFPQEIFQL 246 (338)
Q Consensus 225 L~~L~Ls~N~l~~~~p~~l~~l 246 (338)
|++|++++|.+++..|..+..+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGG
T ss_pred ccEEeCCCCcccccChhhhhcc
Confidence 9999999999998777666543
No 21
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=7.2e-21 Score=172.72 Aligned_cols=171 Identities=23% Similarity=0.233 Sum_probs=148.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++++|++++|.+.. ++. .+..+++|++|++++|.++.......+..+++|++|++++|.+++..+..+..+++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~-l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-MSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153 (306)
T ss_dssp CSCCCEEECCSCSEEE-EEE--EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred ccccCEEECCCCcccc-Chh--hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence 4689999999999984 455 6888999999999999997542225788999999999999999988888899999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.+++ ..+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 226 (306)
T 2z66_A 154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226 (306)
T ss_dssp EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence 99999998642 14677889999999999999999987788999999999999999999977777888999999
Q ss_pred eeeccCCCCCCcCCCCCCCCC
Q 019584 251 FLGLCGGPLSKKCNNSEASPP 271 (338)
Q Consensus 251 ~L~l~~N~l~~~~p~~~~~~~ 271 (338)
+|++++|.+++..|......+
T Consensus 227 ~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 227 VLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp EEECTTSCCCBCSSSSCCCCC
T ss_pred EeECCCCCCcccCHHHHHhhh
Confidence 999999999998887766543
No 22
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=5.6e-21 Score=177.84 Aligned_cols=176 Identities=24% Similarity=0.242 Sum_probs=147.1
Q ss_pred CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
..|.+..+.|... ...++.|+|++|.+++..+. .+. ++++|++|+|++|.++.. .+..+.++++|++
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~ 92 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRY 92 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCE
Confidence 3478888888532 34588999999999987766 676 899999999999999864 5677999999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhc---ccCCC
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTL---ANLSS 224 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~ 224 (338)
|+|++|++++..+..|..+++|++|+|++|+++ ...+..+..+++|++|+|++|.+++..+..+ ..+++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCccc--------EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 999999999666667899999999999999975 3346788999999999999999997544444 57899
Q ss_pred CCeeecccccCcccCchhccCCCC--CCeeeccCCCCCCcCC
Q 019584 225 LRFSSLSGCRLQGEFPQEIFQLPN--LQFLGLCGGPLSKKCN 264 (338)
Q Consensus 225 L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~~~p 264 (338)
|+.|+|++|++++..+..+..++. ++.|++++|++.|.|.
T Consensus 165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 999999999999655567777776 4889999999999875
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.6e-20 Score=177.36 Aligned_cols=171 Identities=22% Similarity=0.185 Sum_probs=115.7
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|+|++|++++..+. .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..+..+..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4788899999998887777 788888888888888888754 5677888888888888888888555556778888888
Q ss_pred EEccCCCCCcccc------------ccc----CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 172 LDLSYSNFDTFYL------------KLQ----KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 172 L~Ls~N~l~~~~l------------~~~----~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
|++++|+++.... .+. ...++ ..+..+++|++|++++|++++ +| .+..+++|++|+|++|.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCc
Confidence 8888888764211 000 01111 235566677777777766664 22 35556666666666666
Q ss_pred CcccCchhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584 235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSE 267 (338)
Q Consensus 235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 267 (338)
+++..|..+..+++|+.|++++|.+++..|..+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHh
Confidence 665556666666666666666666665544433
No 24
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.3e-20 Score=168.65 Aligned_cols=133 Identities=25% Similarity=0.221 Sum_probs=62.9
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
++++|++++|.+++..+. .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 29 ~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 455555555555544443 455555555555555555432 33345555555555555555554444445555555555
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCc
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
++++|+++. ..+..+..+++|++|++++|.+++. +|..++.+++|++|++++|+++
T Consensus 106 ~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 106 VAVETNLAS--------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp ECTTSCCCC--------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCCccc--------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 555555431 1111233444444444444444331 2344444444444444444443
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=7.9e-21 Score=181.62 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=124.1
Q ss_pred cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~ 197 (338)
++|+.|++++|.++.. .|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ ...+..+..
T Consensus 275 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~ 345 (455)
T 3v47_A 275 SGVKTCDLSKSKIFAL-LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--------SIDSRMFEN 345 (455)
T ss_dssp SCCCEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--------EECGGGGTT
T ss_pred cCceEEEecCcccccc-chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC--------CcChhHhcC
Confidence 5799999999998865 7888999999999999999999877888999999999999999965 345678889
Q ss_pred CCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.||.
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999988889999999999999999999976666678899999999999999999984
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=5.6e-20 Score=166.04 Aligned_cols=155 Identities=23% Similarity=0.210 Sum_probs=86.5
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+++..+. .+..+++|++|++++|.++. ++.. ..+++|++|++++|.++ .+|..+..+++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCcCCccCHH--HhhcCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCE
Confidence 3566666666666655554 56666666666666666543 2221 45556666666666665 45555555666666
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|+++ ...+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++
T Consensus 105 L~l~~N~l~--------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 105 LDVSFNRLT--------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp EECCSSCCC--------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred EECCCCcCc--------ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 666666543 222344555555666666666555544444555555556666655555333333445555555
Q ss_pred eeccCCCCC
Q 019584 252 LGLCGGPLS 260 (338)
Q Consensus 252 L~l~~N~l~ 260 (338)
|++++|.++
T Consensus 177 L~L~~N~l~ 185 (290)
T 1p9a_G 177 LLLQENSLY 185 (290)
T ss_dssp EECCSSCCC
T ss_pred EECCCCcCC
Confidence 555555555
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=6.5e-20 Score=165.63 Aligned_cols=160 Identities=23% Similarity=0.202 Sum_probs=139.4
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
...+++.|++++|.+++.. . ...+++|++|++++|.++. +|..+..+++|++|++++|++++..+..|..+++|
T Consensus 53 ~l~~L~~L~L~~n~l~~~~-~---~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTKLQ-V---DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp TCTTCCEEECTTSCCCEEE-C---CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred cCCCCCEEECCCCccCccc-C---CCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 3568999999999998653 2 3688999999999999973 78888999999999999999996666789999999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
++|++++|+++ ...+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+...++|
T Consensus 127 ~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 127 QELYLKGNELK--------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp CEEECTTSCCC--------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred CEEECCCCCCC--------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC
Confidence 99999999975 344556788999999999999999766666788999999999999999 788888888999
Q ss_pred CeeeccCCCCCCcCC
Q 019584 250 QFLGLCGGPLSKKCN 264 (338)
Q Consensus 250 ~~L~l~~N~l~~~~p 264 (338)
+.+++++|++.|.|.
T Consensus 198 ~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 198 PFAFLHGNPWLCNCE 212 (290)
T ss_dssp SEEECCSCCBCCSGG
T ss_pred CeEEeCCCCccCcCc
Confidence 999999999999884
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=1.9e-19 Score=160.86 Aligned_cols=165 Identities=21% Similarity=0.157 Sum_probs=142.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+... . .+..+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~~--~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--Q--GIQYLPNVRYLALGGNKLHD--I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSCCCCC--T--TGGGCTTCCEEECTTSCCCC--C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cceeeeeeCCCCcccc--c--ccccCCCCcEEECCCCCCCC--c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 5799999999998742 2 68899999999999999974 4 47899999999999999999766667899999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|+++ +..+..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|++
T Consensus 114 L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 114 LVLVENQLQ--------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185 (272)
T ss_dssp EECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCcCC--------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCE
Confidence 999999965 345566889999999999999999877777899999999999999999777777889999999
Q ss_pred eeccCCCCCCcCCCCCCCCC
Q 019584 252 LGLCGGPLSKKCNNSEASPP 271 (338)
Q Consensus 252 L~l~~N~l~~~~p~~~~~~~ 271 (338)
|++++|.+++..|..+...+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCT
T ss_pred EECCCCcCCccCHHHHhCCc
Confidence 99999999987765554443
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=174.50 Aligned_cols=171 Identities=27% Similarity=0.333 Sum_probs=124.8
Q ss_pred CCCCcccceeEEcCC-----------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCC
Q 019584 76 NKDCCSWDGVKCNED-----------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSR 144 (338)
Q Consensus 76 ~~~~c~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~ 144 (338)
....|.|.++ |+.. ..++++|++++|.+++..+. .+.++++|++|++++|.++.. .+..+.++++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~ 101 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSSLGS 101 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCCCCC
Confidence 4566888876 5421 24789999999999877665 788999999999999998764 5677889999
Q ss_pred CcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCC-CCCCCchhccc
Q 019584 145 LTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVH-ISSTVPHTLAN 221 (338)
Q Consensus 145 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~ 221 (338)
|++|++++|.+++..+..+..+++|++|++++|+++. +|. .+..+++|++|++++|. +.+..+..++.
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---------l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT---------LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS---------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc---------cCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 9999999999985444448889999999999998753 332 56667777777777773 55444556667
Q ss_pred CCCCCeeecccccCcccCchhccCCCCCCeeeccCCCC
Q 019584 222 LSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPL 259 (338)
Q Consensus 222 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 259 (338)
+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 77777777777777766666666655555555555554
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.5e-19 Score=158.14 Aligned_cols=176 Identities=22% Similarity=0.234 Sum_probs=149.5
Q ss_pred CCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc
Q 019584 78 DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG 157 (338)
Q Consensus 78 ~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 157 (338)
.||.|.|..|.. ..++++++++.++. +|. .+. ++++.|++++|.++.. .+..+.++++|++|+|++|.+++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 477899999953 45689999999884 444 343 6899999999999875 67789999999999999999998
Q ss_pred ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584 158 QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
..+..+..+++|++|++++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA--------SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCHhHhccCCcCCEEECCCCccc--------ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 77778999999999999999975 3445678899999999999999998777778999999999999999997
Q ss_pred cCchhccCCCCCCeeeccCCCCCCcCCCCCCCC
Q 019584 238 EFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASP 270 (338)
Q Consensus 238 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 270 (338)
..+..+..+++|++|++++|.+++..|..+...
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence 666689999999999999999997766555443
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=176.32 Aligned_cols=172 Identities=23% Similarity=0.224 Sum_probs=122.3
Q ss_pred cceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccc
Q 019584 82 WDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQ 152 (338)
Q Consensus 82 w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~ 152 (338)
|..+.|... ..+++.|+|++|.+++..+. .+.++++|++|+|++|.++.. .|..+.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCC
Confidence 567777532 35788999999999887776 788899999999999988764 677888888999999999
Q ss_pred ccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584 153 SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232 (338)
Q Consensus 153 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 232 (338)
|.+++..+..+..+++|++|++++|+++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVI--------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CcCCccCcccccCCCCCCEEECCCCcccc--------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 88885444457888888888888888652 3345566666666666666666665555666666666666666
Q ss_pred ccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 66664444455566666666666666555433
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=8.2e-20 Score=163.36 Aligned_cols=168 Identities=21% Similarity=0.136 Sum_probs=142.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.+++++|++++|.+++..+. .+..+++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+..+++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp CTTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred ccCCcEEECCCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 46899999999999987766 789999999999999999864 667899999999999999999966666789999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCC----eeecccccCcccCchhccCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLR----FSSLSGCRLQGEFPQEIFQL 246 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l 246 (338)
+|++++|.+++ ..+|..+..+++|++|++++|++++..+..+..+.+|+ .|++++|.+++. +......
T Consensus 128 ~L~l~~n~l~~-------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~ 199 (276)
T 2z62_A 128 ELNVAHNLIQS-------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKE 199 (276)
T ss_dssp EEECCSSCCCC-------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCS
T ss_pred EEECcCCccce-------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCC
Confidence 99999999753 24688899999999999999999987777777777777 899999999954 4444455
Q ss_pred CCCCeeeccCCCCCCcCCCCCCC
Q 019584 247 PNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 247 ~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
.+|+.|++++|.+++..+..+..
T Consensus 200 ~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp CCEEEEECCSSCCSCCCTTTTTT
T ss_pred CcccEEECCCCceeecCHhHhcc
Confidence 68999999999999755544333
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=3.7e-19 Score=152.46 Aligned_cols=157 Identities=19% Similarity=0.179 Sum_probs=132.8
Q ss_pred EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584 95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174 (338)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 174 (338)
+.++.++++++.. |. . ..++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 10 ~~v~c~~~~l~~~-p~--~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PT--G--IPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSSC-CS--C--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccCC-CC--C--CCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 4788888887643 32 2 246899999999999854 5566889999999999999999655556789999999999
Q ss_pred cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeec
Q 019584 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGL 254 (338)
Q Consensus 175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 254 (338)
++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 84 s~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 84 STNQLQ--------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCC--------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEe
Confidence 999975 334456789999999999999999877777899999999999999999766666889999999999
Q ss_pred cCCCCCCcCCC
Q 019584 255 CGGPLSKKCNN 265 (338)
Q Consensus 255 ~~N~l~~~~p~ 265 (338)
++|++.|.+|.
T Consensus 156 ~~N~~~~~~~~ 166 (208)
T 2o6s_A 156 HDNPWDCTCPG 166 (208)
T ss_dssp CSCCBCCCTTT
T ss_pred cCCCeecCCCC
Confidence 99999999884
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=171.68 Aligned_cols=175 Identities=22% Similarity=0.192 Sum_probs=128.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|+|++|.+.+..+. .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|++++..+..+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 4677888888888776666 777888888888888887654 5567777888888888888887444446777788888
Q ss_pred EEccCCCCCcccc------------cccC----CCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 172 LDLSYSNFDTFYL------------KLQK----PGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 172 L~Ls~N~l~~~~l------------~~~~----~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
|++++|.++.... .+.. ..++ ..+.++++|++|++++|.++. +| .+..+++|++|+|++|+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCc
Confidence 8888877653210 0000 1122 356778888888888888874 44 47788899999999999
Q ss_pred CcccCchhccCCCCCCeeeccCCCCCCcCCCCCCCCC
Q 019584 235 LQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEASPP 271 (338)
Q Consensus 235 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 271 (338)
+++..|..+..+++|+.|++++|.+++..|..+...+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 9987788888999999999999999887776555443
No 35
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=9.1e-20 Score=180.50 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=143.7
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++++|++++|.+++..+. .+.++++|++|++++|.++.. .|..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CCCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 46799999999999988877 899999999999999999864 677899999999999999999987799999999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
+|++++|.++ ...+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|++++..|..+..+++|
T Consensus 108 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 108 NLVAVETKLA--------SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp EEECTTSCCC--------CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred EEEccCCccc--------cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 9999999975 3344668999999999999999986 679999999999999999999998777777766555
Q ss_pred C----eeeccCCCCCCcCCC
Q 019584 250 Q----FLGLCGGPLSKKCNN 265 (338)
Q Consensus 250 ~----~L~l~~N~l~~~~p~ 265 (338)
+ ++++++|.+++..+.
T Consensus 180 ~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp TTCCCEEECTTCCCCEECTT
T ss_pred ccccceeeccCCCcceeCcc
Confidence 4 799999999865544
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=3.4e-20 Score=181.38 Aligned_cols=173 Identities=28% Similarity=0.321 Sum_probs=139.5
Q ss_pred CcccceeEEcCC-----------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 79 CCSWDGVKCNED-----------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 79 ~c~w~gv~c~~~-----------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
.|.|.++ |+.. ..++++|++++|.+++..+. .+.++++|++|++++|.+++. .|..+.++++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 78 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence 4788887 7532 24799999999999988777 899999999999999999864 6678999999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCC
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLR 226 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~ 226 (338)
|++++|.+++..|..++.+++|++|++++|.+++ ...|..+.++++|++|++++|.+.+.+| ..+..+++|+
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT-------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS-------SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccc-------cchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 9999999997777779999999999999999753 1345677888888888888888544454 5788888888
Q ss_pred eeecccccCcccCchhccC------------------------CCCCCeeeccCCCCCCc
Q 019584 227 FSSLSGCRLQGEFPQEIFQ------------------------LPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 227 ~L~Ls~N~l~~~~p~~l~~------------------------l~~L~~L~l~~N~l~~~ 262 (338)
+|++++|.+++.+|..+.. +++|++|++++|.+++.
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 8888888888777766544 56677777777777763
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=6.4e-20 Score=181.59 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=86.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
++++.|++++|.+.+ ++. .+..+++|+.|++++|.+.+. .| ..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 376 ~~L~~L~L~~n~l~~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSA--NFMGLEELQHLDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp SCCCEEECCSCSEEE-ECC--CCTTCTTCCEEECTTSEEEST-TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred CcccEeECCCCcccc-chh--hccCCCCCCeeECCCCccCCc-cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 456667777766654 223 455555566666665555443 23 3455555555555555555544455555555555
Q ss_pred EEEccCCCCCccc--------------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584 171 VLDLSYSNFDTFY--------------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230 (338)
Q Consensus 171 ~L~Ls~N~l~~~~--------------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 230 (338)
+|++++|.+++.. ++ +..|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE---QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC---ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 5555555432100 11 223344555555555555555555555555555555555555
Q ss_pred ccccCcccCchhccCCC-CCCeeeccCCCCCCcCC
Q 019584 231 SGCRLQGEFPQEIFQLP-NLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 231 s~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p 264 (338)
++|+++ .+|..+..++ +|++|++++|++.|.|+
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 555555 4444455554 35555666666555555
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.7e-19 Score=178.76 Aligned_cols=164 Identities=23% Similarity=0.192 Sum_probs=137.7
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
+.++++|||++|.|++..+. .|.++++|++|+|++|.++.. .+..|.++++|++|+|++|++++..+..|.++++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CcCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 35789999999999987777 899999999999999999864 566799999999999999999965556789999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
+|++++|+++ ...+..+.++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.++
T Consensus 128 ~L~Ls~N~l~--------~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 128 KLVAVETNLA--------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp EEECTTSCCC--------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred EEECCCCcCC--------CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 9999999975 3334568899999999999999976 467888999999999999999998777777654443
Q ss_pred ----CeeeccCCCCCCcCCC
Q 019584 250 ----QFLGLCGGPLSKKCNN 265 (338)
Q Consensus 250 ----~~L~l~~N~l~~~~p~ 265 (338)
..++++.|.+....|.
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TTCCCEEECTTCCCCEECTT
T ss_pred hhhhhhhhcccCcccccCcc
Confidence 4678888888765443
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=176.87 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=94.7
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcEEEcccccCccccchh-hcCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNL 169 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L 169 (338)
+++++|++++|.+++..+. .+..+++|++|++++|.+++. .+|..+..+++|++|++++|.+++.+|.. +..+++|
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CcccEEEeECCccChhhhh--hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4566666666666655555 566666666666666666531 13445666666666666666666545543 5556666
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQLPN 248 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 248 (338)
++|++++|+++ +..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus 402 ~~L~Ls~N~l~--------~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 402 LSLNMSSNILT--------DTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp CEEECCSSCCC--------GGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred CEEECcCCCCC--------cchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 66666666643 22232222 56666666666666 45665566666666666666666 44443 556666
Q ss_pred CCeeeccCCCCCCcCC
Q 019584 249 LQFLGLCGGPLSKKCN 264 (338)
Q Consensus 249 L~~L~l~~N~l~~~~p 264 (338)
|++|++++|+++|.|+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 6666666666666554
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2e-19 Score=172.26 Aligned_cols=171 Identities=23% Similarity=0.210 Sum_probs=103.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh--------
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-------- 162 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-------- 162 (338)
..+++.|+|++|.+.+..+. .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.++...+..
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 45778888888888776666 777778888888888877643 4445677777777777777776333323
Q ss_pred -----------------hcCCCCCCEEEccCCCCCccc----------ccccC----CCcchhhcCCCCCCEEEccCCCC
Q 019584 163 -----------------LLELSNLEVLDLSYSNFDTFY----------LKLQK----PGLANLAENLTNLKALDLINVHI 211 (338)
Q Consensus 163 -----------------l~~l~~L~~L~Ls~N~l~~~~----------l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l 211 (338)
+..+++|++|++++|++++.. +.+.. +..|..+.++++|++|++++|.+
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 334455555555555543210 00000 11244455566666666666666
Q ss_pred CCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 212 SSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 212 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
++..+..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.|+|.
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 65555556666666666666666664444455566666666666666666654
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=4.7e-19 Score=162.48 Aligned_cols=192 Identities=21% Similarity=0.257 Sum_probs=134.6
Q ss_pred CCCCCCCCCCCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchh
Q 019584 68 ATWKPDEKNKDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSA 138 (338)
Q Consensus 68 ~~w~~~~~~~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~ 138 (338)
..|....+....|.|+.+.|... .++++.|++++|.+++..+. .+.++++|++|++++|.++.. .|..
T Consensus 19 ~~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~ 95 (330)
T 1xku_A 19 EPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGA 95 (330)
T ss_dssp ---CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTT
T ss_pred ccccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHH
Confidence 34443323344578999999631 35789999999999987766 789999999999999999864 6888
Q ss_pred hhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCccccc------------cc------CCCcchhhcCCCC
Q 019584 139 ILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLK------------LQ------KPGLANLAENLTN 200 (338)
Q Consensus 139 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~------------~~------~~~~~~~~~~l~~ 200 (338)
+.++++|++|++++|.++ .+|..+. ++|++|++++|.+++.... +. .+..+..+..+++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 999999999999999887 5555443 4566666666654421000 00 0123445666677
Q ss_pred CCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCC
Q 019584 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 268 (338)
|++|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|++|++++|.+++..|..+.
T Consensus 173 L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 173 LSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp CCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 7777777777664 444433 6788888888888877778888889999999999998886664443
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=3.3e-19 Score=176.45 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=148.2
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
+.+++.|++++|.+++..+. .+.++++|++|++++|.++.. .|..+.++++|++|++++|.+++..|..+..+++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred CCcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 45799999999999988777 899999999999999999865 788899999999999999999988899999999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|++++ ..+..+.++++|++|++++|.+++..++.+..+++|++|++++|.+++..|..+..+++|+
T Consensus 109 ~L~L~~n~i~~--------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 109 HLFFIQTGISS--------IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EEECTTSCCSC--------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred EeeccccCccc--------CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 99999999753 3356688999999999999999985444455599999999999999988888999999999
Q ss_pred --eeeccCCCCCCcCCCCCC
Q 019584 251 --FLGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 251 --~L~l~~N~l~~~~p~~~~ 268 (338)
.|++++|.+++..|..+.
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp SEEEECTTCCCCEECTTTTT
T ss_pred eeEEecCCCccCccChhHhh
Confidence 899999999998776544
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.9e-19 Score=153.99 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=131.0
Q ss_pred CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
...|.|..+.|... ..+++.|++++|.+++..+. .+..+++|++|+|++|.++.. .|..+.++++|++
T Consensus 8 ~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 8 ACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNS 84 (220)
T ss_dssp TSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCE
T ss_pred CCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCE
Confidence 34588999999642 34789999999999987776 889999999999999999865 6889999999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 227 (338)
|+|++|.++...+..+..+++|++|+|++|+++ ...+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKIN--------CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred EECCCCcCCccCHhHccCCCCCCEEECCCCCCC--------EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 999999999544445789999999999999975 455778899999999999999999887888999999999
Q ss_pred eecccccCcc
Q 019584 228 SSLSGCRLQG 237 (338)
Q Consensus 228 L~Ls~N~l~~ 237 (338)
|+|++|.+..
T Consensus 157 L~L~~N~~~c 166 (220)
T 2v9t_B 157 MHLAQNPFIC 166 (220)
T ss_dssp EECCSSCEEC
T ss_pred EEeCCCCcCC
Confidence 9999999874
No 44
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=3.6e-19 Score=151.41 Aligned_cols=151 Identities=17% Similarity=0.215 Sum_probs=129.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+.. ++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 44 ~~L~~L~l~~n~i~~-l~---~l~~l~~L~~L~l~~n~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 44 NSLTYITLANINVTD-LT---GIEYAHNIKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HTCCEEEEESSCCSC-CT---TGGGCTTCSEEEEESCCCS---CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred CCccEEeccCCCccC-hH---HHhcCCCCCEEEccCCCCC---cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 479999999999883 32 5888999999999999775 3457899999999999999999878889999999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCC-CCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVH-ISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
|++++|+++ ...+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 117 L~Ls~n~i~--------~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHD--------DSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLN 184 (197)
T ss_dssp EECCSSBCB--------GGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCC
T ss_pred EEecCCccC--------cHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCC
Confidence 999999965 3567888999999999999998 65 455 68999999999999999995 55 788999999
Q ss_pred eeeccCCCCCC
Q 019584 251 FLGLCGGPLSK 261 (338)
Q Consensus 251 ~L~l~~N~l~~ 261 (338)
+|++++|++.+
T Consensus 185 ~L~l~~N~i~~ 195 (197)
T 4ezg_A 185 QLYAFSQTIGG 195 (197)
T ss_dssp EEEECBC----
T ss_pred EEEeeCcccCC
Confidence 99999999865
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=5e-19 Score=162.51 Aligned_cols=180 Identities=20% Similarity=0.213 Sum_probs=123.8
Q ss_pred CCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEE
Q 019584 78 DCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHL 148 (338)
Q Consensus 78 ~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L 148 (338)
..|.|+.+.|... .++++.|++++|.+.+..+. .+.++++|++|++++|.++.. .|..+.++++|++|
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKL 107 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEE
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEE
Confidence 3478999998632 34789999999999887766 788999999999999998764 67888888888888
Q ss_pred EcccccCccccchh----------------------hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC--------
Q 019584 149 NLSQSYFSGQIPAE----------------------LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL-------- 198 (338)
Q Consensus 149 ~Ls~n~l~~~~p~~----------------------l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l-------- 198 (338)
++++|.++ .+|.. +..+++|++|++++|.++.. +..+..+..+
T Consensus 108 ~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~~l~L~~L~l~ 180 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFEPGAFDGLKLNYLRIS 180 (332)
T ss_dssp ECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG------GSCTTSSCSCCCSCCBCC
T ss_pred ECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC------CCCcccccCCccCEEECc
Confidence 88888877 45543 33444444444444443210 0111111111
Q ss_pred ------------CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 199 ------------TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 199 ------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..
T Consensus 181 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred CCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 35666666666666655666777777888888888877666667777778888888888777 56654
Q ss_pred CC
Q 019584 267 EA 268 (338)
Q Consensus 267 ~~ 268 (338)
..
T Consensus 260 l~ 261 (332)
T 2ft3_A 260 LP 261 (332)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=171.20 Aligned_cols=168 Identities=23% Similarity=0.201 Sum_probs=118.2
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch-hhcCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA-ELLELSNL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L 169 (338)
..+++.|+|++|.+++..+. .+..+++|++|++++|.++.. .+..+.++++|++|++++|...+.++. .+..+++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNG--AFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTT--TSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred CccCCEEECCCCcCCeeCHh--HhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 46788888988888866555 677888888888888887643 334555556666666655332223332 34455555
Q ss_pred CEEEccCCCCCccc-----------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584 170 EVLDLSYSNFDTFY-----------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 232 (338)
++|++++|+++.++ ++ ...|..+..+++|++|++++|.+++..+..+..+++|++|+|++
T Consensus 188 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS---AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC---EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred CeecCCCCcCccccccCCCcccCEEECCCCccC---ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 55555555443211 11 23356778888888888888888887788888889999999999
Q ss_pred ccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
|++++..+..+..+++|+.|++++|++.|+|.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99996666677888999999999999999885
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=1.4e-19 Score=165.06 Aligned_cols=166 Identities=19% Similarity=0.088 Sum_probs=121.7
Q ss_pred CCcEEEEEeCCCCceeecCCCCcc--ccCcCccEEEccCCCCCCCCCchhhhcC-----CCCcEEEcccccCccccchhh
Q 019584 91 TGHVVELDLASSCLYGSINSTSSL--FQLVHLQRLSLFDNNFNFSEIPSAILNF-----SRLTHLNLSQSYFSGQIPAEL 163 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l 163 (338)
..++++|++++|.+++.+|. .+ ..+++|++|++++|.+++ .|..+..+ ++|++|++++|++++..|..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred cCCccEEEccCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 45788899999988887777 54 788899999999998875 46677766 889999999999887666888
Q ss_pred cCCCCCCEEEccCCCCCcccccccCCCcchhh--cCCCCCCEEEccCCCCCC--CCc-hhcccCCCCCeeecccccCccc
Q 019584 164 LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA--ENLTNLKALDLINVHISS--TVP-HTLANLSSLRFSSLSGCRLQGE 238 (338)
Q Consensus 164 ~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~ 238 (338)
..+++|++|++++|++.+. ...+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|++++.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGE------RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCCSSCCEEECCSCTTCHH------HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred ccCCCCCEEECCCCCcCcc------hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 8888999999998885420 0123333 677888888888888873 122 2334667888888888888866
Q ss_pred Cc-hhccCCCCCCeeeccCCCCCCcCCCCC
Q 019584 239 FP-QEIFQLPNLQFLGLCGGPLSKKCNNSE 267 (338)
Q Consensus 239 ~p-~~l~~l~~L~~L~l~~N~l~~~~p~~~ 267 (338)
+| ..+..+++|++|++++|.++ .+|...
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 54 34555678888888888887 566544
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=153.23 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=132.5
Q ss_pred CCCcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcE
Q 019584 77 KDCCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTH 147 (338)
Q Consensus 77 ~~~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~ 147 (338)
...|.|..+.|... ...++.|+|++|.+++..+. ..+..+++|++|++++|.++.. .+..+.++++|++
T Consensus 8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~ 85 (220)
T 2v70_A 8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNE 85 (220)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCE
Confidence 34488999998642 24678999999999977543 1578999999999999999864 5668999999999
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCe
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRF 227 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 227 (338)
|+|++|.+++..+..+..+++|++|+|++|+++ +..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--------CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC--------CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCC--------eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 999999999777778999999999999999975 455778899999999999999999988999999999999
Q ss_pred eecccccCcccCc
Q 019584 228 SSLSGCRLQGEFP 240 (338)
Q Consensus 228 L~Ls~N~l~~~~p 240 (338)
|++++|.+.+..+
T Consensus 158 L~L~~N~l~c~c~ 170 (220)
T 2v70_A 158 LNLLANPFNCNCY 170 (220)
T ss_dssp EECCSCCEECSGG
T ss_pred EEecCcCCcCCCc
Confidence 9999999986543
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=4.3e-20 Score=184.30 Aligned_cols=164 Identities=13% Similarity=0.248 Sum_probs=143.1
Q ss_pred CCcEEEEEeCCCCceee-----------------cCCCCccc--cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcc
Q 019584 91 TGHVVELDLASSCLYGS-----------------INSTSSLF--QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLS 151 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~-----------------~~~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls 151 (338)
..++++|+|++|.+++. +|. .+. ++++|++|++++|.+.+. +|..+.++++|++|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECc
Confidence 46899999999999985 777 788 999999999999999876 99999999999999999
Q ss_pred ccc-Ccc-ccchhhcCC------CCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchhccc
Q 019584 152 QSY-FSG-QIPAELLEL------SNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHTLAN 221 (338)
Q Consensus 152 ~n~-l~~-~~p~~l~~l------~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 221 (338)
+|+ ++| .+|..++.+ ++|++|++++|+++ .+|. .+.++++|++|++++|.++|.+| .++.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~---------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK---------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS---------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC---------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 998 998 899988876 99999999999964 5677 88899999999999999998888 8888
Q ss_pred CCCCCeeecccccCcccCchhccCCCC-CCeeeccCCCCCCcCCCCCCC
Q 019584 222 LSSLRFSSLSGCRLQGEFPQEIFQLPN-LQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 222 l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~~~~ 269 (338)
+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..
T Consensus 352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 888888888888888 78888888888 888888888888 67765443
No 50
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=177.03 Aligned_cols=145 Identities=24% Similarity=0.301 Sum_probs=87.6
Q ss_pred cccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcch
Q 019584 114 LFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN 193 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~ 193 (338)
+..+++|+.|++++|.+.....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ +.+|.
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~p~ 464 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------NFLPD 464 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------GEECS
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-------ccchh
Confidence 44455555555555555432111345556666666666666665555555666666666666665421 23555
Q ss_pred hhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 194 LAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 194 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
.+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+++|.||.
T Consensus 465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 666666777777777766665566666666777777777776655555566666777777777777766663
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.79 E-value=2.6e-19 Score=176.03 Aligned_cols=161 Identities=21% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCC-CCchhhhcCCCCcEEEcccccCccccchh-hcCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFS-EIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELS 167 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~ 167 (338)
..+++++|++++|.+++..+. .+.++++|++|++++|.+++. .+|..+.++++|++|++++|.+++.+|.. +..++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCccccchhh--hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 346788888888888877776 788888899999998888752 13456788888999999998888756654 67788
Q ss_pred CCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccCC
Q 019584 168 NLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQL 246 (338)
Q Consensus 168 ~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l 246 (338)
+|++|++++|+++ +..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 429 ~L~~L~l~~n~l~--------~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 429 SILVLNLSSNMLT--------GSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp TCCEEECCSSCCC--------GGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred cCCEEECCCCCCC--------cchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 8999999988864 23333322 68899999999888 57777778889999999999998 56665 7888
Q ss_pred CCCCeeeccCCCCCCcCC
Q 019584 247 PNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 247 ~~L~~L~l~~N~l~~~~p 264 (338)
++|+.|++++|++.|.||
T Consensus 497 ~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCCCEECCSCCBCCCHH
T ss_pred CCCCEEEecCCCcCCCcc
Confidence 889999999999998876
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=182.91 Aligned_cols=178 Identities=22% Similarity=0.193 Sum_probs=150.0
Q ss_pred cccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcccc
Q 019584 80 CSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQI 159 (338)
Q Consensus 80 c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 159 (338)
|.|..|.+ .++++++|||++|.+++..+. .+.++++|++|+|++|.......|..+.++++|++|+|++|.+++..
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 45555555 457899999999999988877 89999999999999997654423788999999999999999999888
Q ss_pred chhhcCCCCCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCc
Q 019584 160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~ 236 (338)
|..|..+++|++|+|++|.++ +.++. .+.++++|++|++++|.+++..+ ..++++++|++|+|++|.++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred HhHccCCcccCEeeCcCCCCC--------cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 999999999999999999965 33444 38899999999999999987654 57899999999999999999
Q ss_pred ccCchhccCC--CCCCeeeccCCCCCCcCCCCCCC
Q 019584 237 GEFPQEIFQL--PNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 237 ~~~p~~l~~l--~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
+..+..+..+ ++|+.|++++|.+.+..|.....
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 8888888766 78889999999888877765443
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=2.2e-19 Score=177.75 Aligned_cols=169 Identities=21% Similarity=0.204 Sum_probs=145.0
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
..++++.|++++|.+.+..+. .+..+++|+.|++++|.+++...+..+..+++|++|++++|.+++..|..+..+++|
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cCCCCCEEECCCCcCCcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 356899999999999988877 899999999999999999765334558899999999999999998888889999999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
++|++++|++++.. ...+..+..+++|++|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|
T Consensus 452 ~~L~L~~n~l~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 452 QHLNLQGNHFPKGN-----IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp CEEECTTCBCGGGE-----ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CEEECCCCCCCccc-----cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 99999999975311 1223568889999999999999998888889999999999999999998888999999999
Q ss_pred CeeeccCCCCCCcCCCC
Q 019584 250 QFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 250 ~~L~l~~N~l~~~~p~~ 266 (338)
.|++++|.+++..|..
T Consensus 527 -~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 527 -YLNLASNHISIILPSL 542 (606)
T ss_dssp -EEECCSSCCCCCCGGG
T ss_pred -EEECcCCcccccCHhh
Confidence 9999999999766653
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=7e-19 Score=176.51 Aligned_cols=166 Identities=21% Similarity=0.135 Sum_probs=145.8
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
+.++++|++++|.+++..+. .+.++++|++|++++|.++.. .|..+.++++|++|++++|.+++..+..|..+++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 35899999999999987666 799999999999999999875 788999999999999999999954444799999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhcc--CCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIF--QLPN 248 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~ 248 (338)
+|++++|+++ ...+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++
T Consensus 101 ~L~L~~n~l~--------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 101 ELHLMSNSIQ--------KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp EEECCSSCCC--------CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred EEECCCCccC--------ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 9999999965 34456789999999999999999998888899999999999999999977776654 5689
Q ss_pred CCeeeccCCCCCCcCCCCC
Q 019584 249 LQFLGLCGGPLSKKCNNSE 267 (338)
Q Consensus 249 L~~L~l~~N~l~~~~p~~~ 267 (338)
|++|++++|.+++..|..+
T Consensus 173 L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp ESEEECTTCCCCCBCTTGG
T ss_pred ccEEECCCCcccccChhhh
Confidence 9999999999998777543
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4e-19 Score=155.55 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=115.9
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-CCCCCCchhhhcCCCCcEEEccc-ccCccccchhhcCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSN 168 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~ 168 (338)
..+++.|++++|++++..+. .+..+++|++|++++|. ++.. .+..+.++++|++|++++ |.+++..+..+..+++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp CTTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CCcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 35799999999999987766 78899999999999997 7643 445788999999999998 9999655567889999
Q ss_pred CCEEEccCCCCCcccccccCCCcchhhcCCCCCC---EEEccCC-CCCCCCchhcccCCCCC-eeecccccCcccCchhc
Q 019584 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLK---ALDLINV-HISSTVPHTLANLSSLR-FSSLSGCRLQGEFPQEI 243 (338)
Q Consensus 169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l 243 (338)
|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|+++ .+|...
T Consensus 107 L~~L~l~~n~l~~---------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 107 LKFLGIFNTGLKM---------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp CCEEEEEEECCCS---------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred CCEEeCCCCCCcc---------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 9999999998653 343 55566665 7777777 66654445566666676 7777776666 444433
Q ss_pred cCCCCCCeeeccCCC-CCCc
Q 019584 244 FQLPNLQFLGLCGGP-LSKK 262 (338)
Q Consensus 244 ~~l~~L~~L~l~~N~-l~~~ 262 (338)
...++|++|++++|+ ++..
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEE
T ss_pred cCCCCCCEEEcCCCCCcccC
Confidence 333566666666664 5543
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=167.97 Aligned_cols=164 Identities=19% Similarity=0.199 Sum_probs=135.8
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.+++++|+|++|.+++..+. .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 46899999999999988777 899999999999999999753 445678999999999999999988888899999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.++ ...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 132 ~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 132 SLEVGDNDLV--------YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp EEEECCTTCC--------EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred EEECCCCccc--------eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 9999999865 23456677888899999998888876667788888888888888888876666777777777
Q ss_pred eeeccCCCCCCcCCC
Q 019584 251 FLGLCGGPLSKKCNN 265 (338)
Q Consensus 251 ~L~l~~N~l~~~~p~ 265 (338)
.|++++|.+.+.+|.
T Consensus 204 ~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 204 VLEISHWPYLDTMTP 218 (477)
T ss_dssp EEEEECCTTCCEECT
T ss_pred eeeCCCCccccccCc
Confidence 777777766655553
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=2.6e-19 Score=163.23 Aligned_cols=161 Identities=23% Similarity=0.240 Sum_probs=132.8
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccC-----cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc--cchhh
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQL-----VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ--IPAEL 163 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l 163 (338)
.+++++|++++|.+++. +. .+..+ ++|++|++++|.++.. .|..+.++++|++|++++|++.+. +|..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCCccEEEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 46899999999999877 65 67776 8999999999999865 668899999999999999998765 34455
Q ss_pred --cCCCCCCEEEccCCCCCcccccccCCCcc-hhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccC
Q 019584 164 --LELSNLEVLDLSYSNFDTFYLKLQKPGLA-NLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEF 239 (338)
Q Consensus 164 --~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~ 239 (338)
..+++|++|++++|++++. ..++ ..+..+++|++|++++|.+++.+| ..+..+++|++|+|++|+++ .+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETP------SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCH------HHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred HhccCCCCCEEECCCCcCcch------HHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 7899999999999997531 1222 445688999999999999998764 45667899999999999999 78
Q ss_pred chhccCCCCCCeeeccCCCCCCcCCC
Q 019584 240 PQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 240 p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
|..+. ++|++|++++|.+++. |.
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~ 291 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS 291 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh
Confidence 87776 7899999999999886 44
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=6.8e-19 Score=174.33 Aligned_cols=158 Identities=19% Similarity=0.131 Sum_probs=105.8
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
+++.|+|++|.+++..+. .+..+++|++|+|++|.+++. .|..+.++++|++|+|++|.+++..+..+..+++|++|
T Consensus 76 ~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 456666666666666555 667777777777777777654 55566777777777777777773333335677777777
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc------------------------------------
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP------------------------------------ 216 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------------------------------------ 216 (338)
++++|.++ +..|..+..+++|++|++++|.+++..+
T Consensus 153 ~Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 153 SMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp ECCSSCCC--------BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred EeeCCcCC--------CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 77777754 3445567778888888888887764211
Q ss_pred -----------------------hhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584 217 -----------------------HTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 217 -----------------------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
..+..+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+++
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence 224455666677777777776666677777777777777777766
No 59
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=7.1e-19 Score=165.03 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh-hcCCCCCCE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE-LLELSNLEV 171 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~ 171 (338)
++++|++++|.+++..+. .+..+++|++|++++|.++.. .|..+.++++|++|++++|.++ .+|.. +..+++|++
T Consensus 70 ~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCcEEECCCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcE
Confidence 444555555555544443 455556666666666665543 4445556666666666666665 33333 355666666
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS 213 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 213 (338)
|++++|.++ ...+..+..+++|++|++++|.+++
T Consensus 146 L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 146 LSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp EECCSSCCC--------BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred EECCCCccC--------ccChhhccCCCCCCEEECCCCcCCc
Confidence 666666543 2334456667777777777776654
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3.9e-19 Score=182.08 Aligned_cols=164 Identities=17% Similarity=0.269 Sum_probs=143.1
Q ss_pred CCCcEEEEEeCCCCcee-----------------ecCCCCccc--cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEc
Q 019584 90 DTGHVVELDLASSCLYG-----------------SINSTSSLF--QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNL 150 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~-----------------~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L 150 (338)
..++++.|+|++|.+++ .+|. .++ ++++|++|+|++|.+.+. +|..+.++++|++|+|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI 522 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence 34689999999999998 3777 766 999999999999999876 9999999999999999
Q ss_pred cccc-Ccc-ccchhhcCCC-------CCCEEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchhc
Q 019584 151 SQSY-FSG-QIPAELLELS-------NLEVLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHTL 219 (338)
Q Consensus 151 s~n~-l~~-~~p~~l~~l~-------~L~~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l 219 (338)
++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .+.++++|++|++++|.++ .+| .+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~---------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC---------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC---------ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 9998 998 8888776655 9999999999964 5677 8899999999999999998 677 88
Q ss_pred ccCCCCCeeecccccCcccCchhccCCCC-CCeeeccCCCCCCcCCCCCCC
Q 019584 220 ANLSSLRFSSLSGCRLQGEFPQEIFQLPN-LQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 220 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~p~~~~~ 269 (338)
+.+++|+.|+|++|+++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 89999999999999999 88888888888 999999999988 67765543
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=170.28 Aligned_cols=167 Identities=22% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
+.+++.|++++|.+++..+. .+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..|..|..+++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 35799999999999988777 899999999999999999864 567899999999999999999977778899999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL 249 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 249 (338)
+|++++|+++. ..+..+.++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..+..+++|
T Consensus 104 ~L~L~~n~l~~--------l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 104 KLVAVETNLAS--------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EEECTTSCCCC--------STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccccc--------CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 99999999753 222358899999999999999987 479999999999999999999998778888887777
Q ss_pred ----CeeeccCCCCCCcCCCCCC
Q 019584 250 ----QFLGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 250 ----~~L~l~~N~l~~~~p~~~~ 268 (338)
+.+++++|.+++..|..+.
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTT
T ss_pred chhhhhcccCCCCceecCHHHhc
Confidence 8999999999987765443
No 62
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.3e-18 Score=147.49 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=111.8
Q ss_pred EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEE
Q 019584 95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLD 173 (338)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (338)
+.+++++++++ .+|. .+. .+|+.|++++|.++.. .+. .+..+++|++|+|++|.+++..|..+..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~--~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPR--DIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCS--CCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCcc--CCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 35677777775 4444 333 3888999999988753 332 478889999999999999877788888889999999
Q ss_pred ccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeee
Q 019584 174 LSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLG 253 (338)
Q Consensus 174 Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 253 (338)
|++|+++ +..+..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++..+-... ...++...
T Consensus 85 Ls~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~ 155 (192)
T 1w8a_A 85 LGENKIK--------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKS 155 (192)
T ss_dssp CCSCCCC--------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHC
T ss_pred CCCCcCC--------ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcC
Confidence 9999865 33445577888888888888888887788888888888888888888865442110 01122223
Q ss_pred ccCCCCCCcCCCCCC
Q 019584 254 LCGGPLSKKCNNSEA 268 (338)
Q Consensus 254 l~~N~l~~~~p~~~~ 268 (338)
+.++...|.-|....
T Consensus 156 ~~~~~~~C~~P~~l~ 170 (192)
T 1w8a_A 156 LNGGAARCGAPSKVR 170 (192)
T ss_dssp CSGGGCBBCSSTTTT
T ss_pred CCCCCCCCCCChHHc
Confidence 445555665565443
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=2.3e-18 Score=157.94 Aligned_cols=171 Identities=19% Similarity=0.163 Sum_probs=119.5
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc--ccchhhcCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG--QIPAELLELSN 168 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~ 168 (338)
..++++|++++|.++. ++. .+. ++|++|++++|.++.. .+..+.++++|++|++++|.++. ..+..+..+++
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~--~~~--~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 172 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPE--KMP--KTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCS--SCC--TTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred CCCCCEEECCCCcCCc-cCh--hhc--ccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCC
Confidence 3578888888888873 333 222 6777777777777653 45567777777777777777752 45556667777
Q ss_pred CCEEEccCCCCCccccc---------ccC----CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccC
Q 019584 169 LEVLDLSYSNFDTFYLK---------LQK----PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRL 235 (338)
Q Consensus 169 L~~L~Ls~N~l~~~~l~---------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 235 (338)
|++|++++|.++.++.. +.. ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 173 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 173 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp CCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred cCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence 77777777665432100 000 12355677888888888888888876666788888888888888888
Q ss_pred cccCchhccCCCCCCeeeccCCCCCCcCCCCCC
Q 019584 236 QGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEA 268 (338)
Q Consensus 236 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 268 (338)
+ .+|..+..+++|++|++++|++++..+..++
T Consensus 253 ~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 253 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp S-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred c-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 8 7787888888888888888888876555444
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.9e-18 Score=168.86 Aligned_cols=169 Identities=18% Similarity=0.144 Sum_probs=114.6
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.|+|++|.+++..+. .+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.+++..|..+..+++|+
T Consensus 98 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCcCCCCCHH--HHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 34677777777777766655 667777777777777777642 333457777777777777777766666777777777
Q ss_pred EEEccCCCCCccccccc---------------------------------------------------CCCcchhhcCCC
Q 019584 171 VLDLSYSNFDTFYLKLQ---------------------------------------------------KPGLANLAENLT 199 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~---------------------------------------------------~~~~~~~~~~l~ 199 (338)
+|++++|.+++..+... ...-+..+..++
T Consensus 175 ~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~ 254 (597)
T 3oja_B 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYP 254 (597)
T ss_dssp EEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCT
T ss_pred EEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCC
Confidence 77777777664311100 000123356677
Q ss_pred CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
+|++|++++|.+++.+|..++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++. +|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~ 317 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VE 317 (597)
T ss_dssp TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CG
T ss_pred CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cC
Confidence 77777777777777777777777777777777777774 56666667777777777777773 44
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=7.7e-19 Score=159.85 Aligned_cols=163 Identities=17% Similarity=0.075 Sum_probs=111.5
Q ss_pred CcEEEEEeCCCCceeecCCCCcc--ccCcCccEEEccCCCCCCCCCc----hhhhcCCCCcEEEcccccCccccchhhcC
Q 019584 92 GHVVELDLASSCLYGSINSTSSL--FQLVHLQRLSLFDNNFNFSEIP----SAILNFSRLTHLNLSQSYFSGQIPAELLE 165 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (338)
.++++|++++|.+.+..+. .+ ..+++|++|++++|.+++. .+ ..+..+++|++|+|++|.+++..+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred CceeEEEeeCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 3599999999999988877 66 8899999999999998764 33 34457899999999999998777788899
Q ss_pred CCCCCEEEccCCCCCcccccccCCCcc--hhhcCCCCCCEEEccCCCCCCCCch----hcccCCCCCeeecccccCcccC
Q 019584 166 LSNLEVLDLSYSNFDTFYLKLQKPGLA--NLAENLTNLKALDLINVHISSTVPH----TLANLSSLRFSSLSGCRLQGEF 239 (338)
Q Consensus 166 l~~L~~L~Ls~N~l~~~~l~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~ 239 (338)
+++|++|++++|++.+. ..++ ..+..+++|++|++++|+++. ++. .++.+++|++|+|++|++++..
T Consensus 168 l~~L~~L~Ls~N~l~~~------~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 240 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGE------RGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV 240 (310)
T ss_dssp CTTCCEEECCSCTTCHH------HHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC
T ss_pred CCCCCEEECCCCCCccc------hhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc
Confidence 99999999999986421 0011 122455666666666666642 222 1345566666666666666554
Q ss_pred chhccCC---CCCCeeeccCCCCCCcCCC
Q 019584 240 PQEIFQL---PNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 240 p~~l~~l---~~L~~L~l~~N~l~~~~p~ 265 (338)
|..+..+ ++|++|++++|.++ .+|.
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 268 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLE-QVPK 268 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred hhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence 5555444 46666666666665 3444
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=1.4e-18 Score=169.82 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=104.8
Q ss_pred CCcEEEEEeCCCCceeecCC-CCccccCcCccEEEccCCCCCCCCCc---hhhhcCCCCcEEEcccccCccccchhhcCC
Q 019584 91 TGHVVELDLASSCLYGSINS-TSSLFQLVHLQRLSLFDNNFNFSEIP---SAILNFSRLTHLNLSQSYFSGQIPAELLEL 166 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 166 (338)
.++++.|++++|.+.+..+. ...+..+++|++|++++|.++. ++ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 35788888888888775532 0146778888889999888864 33 45788889999999999888 788888888
Q ss_pred CCCCEEEccCCCCCccccc---------ccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584 167 SNLEVLDLSYSNFDTFYLK---------LQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~l~---------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
++|++|++++|+++.+.-. +....+......+++|++|++++|+++ .+|. ...+++|++|+|++|++++
T Consensus 410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred ccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 8889999988887532100 000011111224455555555555555 3443 3445555555555555555
Q ss_pred cCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 238 EFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 238 ~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
.+|..+..+++|+.|++++|++.|.||
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 444445555555555555555555554
No 67
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=7.8e-18 Score=157.89 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-hhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-AILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
..++++|++++|.+.+..+. .+.++++|++|++++|.++. +|. .+.++++|++|++++|.+++..|..+..+++|
T Consensus 92 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred CCCcCEEECCCCCCCcCCHH--HhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 45788888888888876666 77888888888888888874 444 35788888888888888886667778888888
Q ss_pred CEEEccCCCCCcc
Q 019584 170 EVLDLSYSNFDTF 182 (338)
Q Consensus 170 ~~L~Ls~N~l~~~ 182 (338)
++|++++|++++.
T Consensus 168 ~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 168 QNLQLSSNRLTHV 180 (390)
T ss_dssp CEEECCSSCCSBC
T ss_pred CEEECCCCcCCcc
Confidence 8888888887653
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=5.9e-18 Score=155.37 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=130.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCC---------------------CCCCchhhhcCCCCcEEE
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFN---------------------FSEIPSAILNFSRLTHLN 149 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~---------------------~~~~p~~l~~l~~L~~L~ 149 (338)
..++++|++++|.+++..+. .+.++++|++|++++|.++ .. .+..+.++++|++|+
T Consensus 77 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEK--AFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153 (332)
T ss_dssp CTTCCEEECCSSCCCEECGG--GSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred CCCCcEEECCCCccCccCHh--HhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence 35677777777777766555 5666666666666666553 21 234578899999999
Q ss_pred cccccCc--cccchhhcCCCCCCEEEccCCCCCccccc---------ccC----CCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 150 LSQSYFS--GQIPAELLELSNLEVLDLSYSNFDTFYLK---------LQK----PGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 150 Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~---------~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
+++|.++ +..+..+..+ +|++|++++|++++++.. +.. ...+..+..+++|++|++++|.+++.
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 9999986 3566666666 677777777765542110 000 23346788899999999999999998
Q ss_pred CchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584 215 VPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 215 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
.+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 8888999999999999999999 88999999999999999999999866655544
No 69
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.76 E-value=5.5e-18 Score=170.00 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=101.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCC-CCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNF-SEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
..++++|++++|.+.+..+. .+..+++|+.|++++|.++. ..+|..+.++++|++|++++|++++..+..+..+++|
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp CTTCCEEECCSCSEEECCTT--TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccEEecCCCCcceeChh--hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 35677788888777655444 44455555555555554431 1134444555555555555555553333344444555
Q ss_pred CEEEccCCCCCcccccc--------------------c---CCCcc-hhhcCCCCCCEEEccCCCCCCCCchhcccCCCC
Q 019584 170 EVLDLSYSNFDTFYLKL--------------------Q---KPGLA-NLAENLTNLKALDLINVHISSTVPHTLANLSSL 225 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~--------------------~---~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 225 (338)
++|++++|+++..+... . -..+| ..+.++++|++|++++|++++..+..+..+++|
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 55555555443210000 0 01233 346777777777777777776555556777788
Q ss_pred CeeecccccCcccCchhcc-CCCCCCeeeccCCCCCCcCCC
Q 019584 226 RFSSLSGCRLQGEFPQEIF-QLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 226 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+.|++++|++++..+..+. .+++|+.+++++|++.|.|+.
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 8888888888766665565 577888888888888888873
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=3.7e-18 Score=169.04 Aligned_cols=162 Identities=22% Similarity=0.274 Sum_probs=126.1
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCc-cccchhhcCCCCCCE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFS-GQIPAELLELSNLEV 171 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~ 171 (338)
+++.+++++++.....+. ..+..+.+++.++++.|.+... .+..+..++.|++|++++|.+. +..|..+..+++|++
T Consensus 421 ~L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp TCCEEECTTSEEESTTSS-CTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cccchhhhhccccccccc-cccccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 445555555544433221 2456777888888888887754 6777788888999999888754 456777888899999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC-CCCC
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL-PNLQ 250 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~ 250 (338)
|+|++|+++ +..|..+.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|+.+..+ ++|+
T Consensus 499 L~Ls~N~L~--------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 499 LDLSQCQLE--------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp EECTTSCCC--------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred EECCCCccC--------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999865 3456778889999999999999988878888889999999999999998888888877 5799
Q ss_pred eeeccCCCCCCcCC
Q 019584 251 FLGLCGGPLSKKCN 264 (338)
Q Consensus 251 ~L~l~~N~l~~~~p 264 (338)
+|++++|++.|+|.
T Consensus 571 ~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 571 FLNLTQNDFACTCE 584 (635)
T ss_dssp EEECTTCCBCCSGG
T ss_pred EEEeeCCCCcccCC
Confidence 99999999999886
No 71
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=5.6e-19 Score=178.54 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHcCccCCCCCCCCCCCCCCCCCCCCCCCCCCcccceeEEcCCCCcEEEEEe----------------
Q 019584 36 CHDRERSALLNFKESLVINQTASSYSSTYPKVATWKPDEKNKDCCSWDGVKCNEDTGHVVELDL---------------- 99 (338)
Q Consensus 36 ~~~~e~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~l~~L~L---------------- 99 (338)
..+.++.+|++++.......+. ....|.. .....+.|.++.+.. ++++.|+|
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l 196 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTA--------KKQQPTG--DSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHK 196 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT--------C-------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCc--------ccCCCcC--CCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcC
Confidence 4567889999999887654442 2334531 223345666655532 23444444
Q ss_pred --CCCCceee---------cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584 100 --ASSCLYGS---------INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN 168 (338)
Q Consensus 100 --s~n~l~~~---------~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 168 (338)
+.+.|.+. .+. .+..++.|+.|+|++|.+. . +|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus 197 ~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~-~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIF-N-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ---------------------------CCCCCCEEECTTSCCS-C-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred ccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCC-C-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 44333321 122 5667788888888888886 2 7777778888888888888888 78888888888
Q ss_pred CCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCC-
Q 019584 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLP- 247 (338)
Q Consensus 169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~- 247 (338)
|++|+|++|.|+ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+.
T Consensus 272 L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 341 (727)
T 4b8c_D 272 LRVLDLSHNRLT---------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341 (727)
T ss_dssp CCEEECTTSCCS---------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH
T ss_pred CCEEeCcCCcCC---------ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch
Confidence 888888888863 45777788888888888888886 5777788888888888888888887777665432
Q ss_pred CCCeeeccCCCCCCcCCCCCCC
Q 019584 248 NLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 248 ~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
.+..+++++|.+++.+|.....
T Consensus 342 ~~~~l~l~~N~l~~~~p~~l~~ 363 (727)
T 4b8c_D 342 TGLIFYLRDNRPEIPLPHERRF 363 (727)
T ss_dssp HHHHHHHHHCCCCCCCCCC---
T ss_pred hhhHHhhccCcccCcCccccce
Confidence 2234678888888888875543
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=161.02 Aligned_cols=164 Identities=19% Similarity=0.137 Sum_probs=139.9
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccch--hhcCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPA--ELLELS 167 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~ 167 (338)
..++++.|++++|.+++..+. .+.++++|++|++++|.++.. .+..+.++++|++|++++|.++ .+|. .+..++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~ 149 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEED--SFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT 149 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT
T ss_pred cCCCCCEEECCCCccCccCHh--hcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC
Confidence 346899999999999987777 899999999999999999853 4445899999999999999999 5665 788999
Q ss_pred CCCEEEccCCC-CCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchh-ccC
Q 019584 168 NLEVLDLSYSN-FDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQE-IFQ 245 (338)
Q Consensus 168 ~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~ 245 (338)
+|++|++++|+ ++ ...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. +..
T Consensus 150 ~L~~L~l~~n~~~~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~ 220 (353)
T 2z80_A 150 KLQILRVGNMDTFT--------KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDV 220 (353)
T ss_dssp TCCEEEEEESSSCC--------EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHH
T ss_pred CCcEEECCCCcccc--------ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhh
Confidence 99999999995 43 233567889999999999999999888999999999999999999997 45544 456
Q ss_pred CCCCCeeeccCCCCCCcCCCC
Q 019584 246 LPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 246 l~~L~~L~l~~N~l~~~~p~~ 266 (338)
+++|+.|++++|.+++..+..
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 221 TSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp TTTEEEEEEESCBCTTCCCC-
T ss_pred cccccEEECCCCccccccccc
Confidence 899999999999999865543
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.4e-17 Score=144.97 Aligned_cols=138 Identities=22% Similarity=0.164 Sum_probs=122.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.|+|++|.+++..+. .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence 46899999999999988777 899999999999999999753 456678999999999999999966666688999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP 240 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 240 (338)
+|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+
T Consensus 116 ~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 116 ELFMCCNKLT---------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EEECCSSCCC---------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred eEeccCCccc---------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999999974 567788999999999999999998777789999999999999999986543
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=4.7e-18 Score=148.74 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=133.4
Q ss_pred CCcEEEEEeCCCC-ceeecCCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584 91 TGHVVELDLASSC-LYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN 168 (338)
Q Consensus 91 ~~~l~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 168 (338)
.++++.|++++|. ++...+. .+.++++|++|++++ |.++.. .+..+.++++|++|++++|.+++ +|. +..+++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence 4689999999997 8876666 789999999999998 999753 45678899999999999999995 776 888888
Q ss_pred CC---EEEccCC-CCCcccccccCCCcchhhcCCCCCC-EEEccCCCCCCCCchhcccCCCCCeeeccccc-CcccCchh
Q 019584 169 LE---VLDLSYS-NFDTFYLKLQKPGLANLAENLTNLK-ALDLINVHISSTVPHTLANLSSLRFSSLSGCR-LQGEFPQE 242 (338)
Q Consensus 169 L~---~L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~ 242 (338)
|+ +|++++| .++. ..+..+..+++|+ +|++++|.++ .+|......++|+.|++++|+ +++..+..
T Consensus 129 L~~L~~L~l~~N~~l~~--------i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTS--------IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp CCSEEEEEEESCTTCCE--------ECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred cccccEEECCCCcchhh--------cCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 88 9999999 8642 2345688999999 9999999998 466554444899999999995 99666677
Q ss_pred ccCC-CCCCeeeccCCCCCCc
Q 019584 243 IFQL-PNLQFLGLCGGPLSKK 262 (338)
Q Consensus 243 l~~l-~~L~~L~l~~N~l~~~ 262 (338)
+..+ ++|+.|++++|++++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCC
T ss_pred hhccccCCcEEECCCCccccC
Confidence 8888 9999999999999853
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=156.62 Aligned_cols=161 Identities=20% Similarity=0.181 Sum_probs=127.6
Q ss_pred CCcEEEEEeCCCCceeecCCC--CccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccc--cc--hhhc
Q 019584 91 TGHVVELDLASSCLYGSINST--SSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQ--IP--AELL 164 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p--~~l~ 164 (338)
..++++|++++|.+++..+.. ..+..+++|++|++++|.++.. .+..+..+++|++|+|++|++.+. ++ ..+.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 457899999999998754420 1345789999999999999765 677888999999999999998643 22 2236
Q ss_pred CCCCCCEEEccCCCCCcccccccCCCcch-hhcCCCCCCEEEccCCCCCCCCchhcccC---CCCCeeecccccCcccCc
Q 019584 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLAN-LAENLTNLKALDLINVHISSTVPHTLANL---SSLRFSSLSGCRLQGEFP 240 (338)
Q Consensus 165 ~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p 240 (338)
.+++|++|++++|+++.. . ..+. .+..+++|++|++++|.+++..|+.+..+ ++|++|+|++|+++ .+|
T Consensus 195 ~l~~L~~L~Ls~N~l~~l--~----~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETP--T----GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp SSCCCCSCBCCSSCCCCH--H----HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred cCCCCCEEECCCCCCCch--H----HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 789999999999997521 1 1111 35788999999999999998878877777 69999999999999 778
Q ss_pred hhccCCCCCCeeeccCCCCCC
Q 019584 241 QEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 241 ~~l~~l~~L~~L~l~~N~l~~ 261 (338)
..+. ++|++|++++|.+++
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCS
T ss_pred hhhc--CCCCEEECCCCcCCC
Confidence 7764 799999999999997
No 76
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=141.95 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=71.6
Q ss_pred EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584 96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175 (338)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 175 (338)
.+++++++++ .+|. .+ .++|+.|++++|.++. +|..+.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 14 ~l~~~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEECTTSCCS-SCCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCCC-cCCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 4566666665 2333 22 2466677777776652 55666666677777777776665555556666666666666
Q ss_pred CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
+|+++ ...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~--------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLR--------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCC--------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccC--------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66643 222334555555555555555555433334455555555555555544
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=160.76 Aligned_cols=155 Identities=23% Similarity=0.206 Sum_probs=126.2
Q ss_pred EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584 95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174 (338)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 174 (338)
+.||+++|+++ .+|. .+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..+..+++|++|++
T Consensus 3 ~~l~ls~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 46899999988 4555 444 8899999999998764 6678899999999999999999777888999999999999
Q ss_pred cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCC-CCchhcccCCCCCeeecccccCcccCchhccCCCCC--Ce
Q 019584 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISS-TVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNL--QF 251 (338)
Q Consensus 175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~ 251 (338)
++|+++ .+|.. .+++|++|++++|.+++ .+|..++.+++|++|++++|.+++ ..+..+++| ++
T Consensus 77 s~N~l~---------~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 142 (520)
T 2z7x_B 77 SHNKLV---------KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISK 142 (520)
T ss_dssp CSSCCC---------EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEE
T ss_pred CCCcee---------ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeE
Confidence 999864 34544 78999999999999987 478889999999999999999885 345666777 99
Q ss_pred eeccCCCC--CCcCCCCCCC
Q 019584 252 LGLCGGPL--SKKCNNSEAS 269 (338)
Q Consensus 252 L~l~~N~l--~~~~p~~~~~ 269 (338)
|++++|.+ .+..|..+..
T Consensus 143 L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 143 VLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp EEEEECTTTTSSCCTTTTTT
T ss_pred EEeecccccccccccccccc
Confidence 99999998 7777766554
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=172.26 Aligned_cols=168 Identities=23% Similarity=0.227 Sum_probs=146.4
Q ss_pred CCCcEEEEEeCCCCceeec-CCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh--hcCC
Q 019584 90 DTGHVVELDLASSCLYGSI-NSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE--LLEL 166 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l 166 (338)
...++++|+|++|...+.+ +. .+.++++|++|+|++|.++.. .|..+.++++|++|+|++|.+++.+|.. +..+
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3468999999999776666 55 799999999999999999865 7889999999999999999999877765 8999
Q ss_pred CCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccC--CCCCeeecccccCcccCchhcc
Q 019584 167 SNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANL--SSLRFSSLSGCRLQGEFPQEIF 244 (338)
Q Consensus 167 ~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~~l~ 244 (338)
++|++|++++|.+++ ...+..+.++++|++|++++|.+++..+..+..+ ++|+.|++++|.+++..|..+.
T Consensus 123 ~~L~~L~Ls~N~l~~-------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 123 KALTRLDLSKNQIRS-------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp SSCCEEEEESCCCCC-------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred CCCCEEECCCCcccc-------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 999999999999753 2344678999999999999999999889988887 8999999999999998887776
Q ss_pred CCCC------CCeeeccCCCCCCcCCCCC
Q 019584 245 QLPN------LQFLGLCGGPLSKKCNNSE 267 (338)
Q Consensus 245 ~l~~------L~~L~l~~N~l~~~~p~~~ 267 (338)
.+++ |+.|++++|.+++..|...
T Consensus 196 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 196 KCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp SSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred hcCCccccCceeEEecCCCcCchhHHHHH
Confidence 6655 9999999999998877543
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=2e-17 Score=162.44 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=109.7
Q ss_pred ccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcc--ccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSG--QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 115 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
..+++|++|++++|.+++. .|..+.++++|++|++++|++++ .+|..+..+++|++|++++|+++ +.+|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN--------SHAY 420 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB--------SCCS
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC--------CccC
Confidence 5677888888888888765 77778888888888888888885 33456788888888888888864 3234
Q ss_pred -hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 193 -NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 193 -~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
..+..+++|++|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 3467788889999999888876666544 68999999999998 78887788999999999999998 46654
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.9e-17 Score=147.89 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=72.9
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++
T Consensus 63 ~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLA----PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQV 133 (308)
T ss_dssp TTCCEEECCSSCCCCCG----GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred CCCCEEEccCCcCCCCh----hHccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCE
Confidence 35556666665554322 24455555555555555542 22 35555555555555555552 222 455555555
Q ss_pred EEccCCCCCccc-----------------ccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc
Q 019584 172 LDLSYSNFDTFY-----------------LKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 172 L~Ls~N~l~~~~-----------------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 234 (338)
|++++|.+++.. + ..++. +..+++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQV----SDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcC----CCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 555555543100 0 01111 4445555555555555543222 4455555555555555
Q ss_pred CcccCchhccCCCCCCeeeccCCCCCC
Q 019584 235 LQGEFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 235 l~~~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
+++.. .+..+++|+.|++++|++++
T Consensus 207 l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 207 ISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCccc--cccCCCCCCEEEccCCeeec
Confidence 55322 24455555555555555544
No 81
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=153.48 Aligned_cols=164 Identities=26% Similarity=0.280 Sum_probs=134.1
Q ss_pred CCcccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCc
Q 019584 78 DCCSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFS 156 (338)
Q Consensus 78 ~~c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~ 156 (338)
..|. ..-.|.. +.+++++++++. +|. .+ ...++.|+|++|.++.. .+..+. ++++|++|+|++|+++
T Consensus 10 ~~Cp-~~C~C~~-----~~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~ 77 (361)
T 2xot_A 10 VSCP-ANCLCAS-----NILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLN 77 (361)
T ss_dssp TTCC-TTCEEET-----TEEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCC
T ss_pred CCCC-CCCEECC-----CEEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCC
Confidence 3465 4567753 378999999874 444 33 24689999999999864 455566 8999999999999999
Q ss_pred cccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 157 GQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 157 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
+..+..|..+++|++|+|++|+++. ..+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|+++
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLHT--------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ccChhhccCCCCCCEEECCCCcCCc--------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 7777789999999999999999752 34456889999999999999999888899999999999999999999
Q ss_pred ccCchh-c---cCCCCCCeeeccCCCCCCc
Q 019584 237 GEFPQE-I---FQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 237 ~~~p~~-l---~~l~~L~~L~l~~N~l~~~ 262 (338)
+ +|.. + ..+++|+.|++++|.++..
T Consensus 150 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 150 R-FPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp S-CCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred e-eCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 5 5544 4 5689999999999999863
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-17 Score=152.69 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=74.4
Q ss_pred CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh-cCCCCCCEEEccCCCCCcccccccCCCcchhh
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL-LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA 195 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~ 195 (338)
+++|+.|++++|.++.. .+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++ ++. .
T Consensus 119 ~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~-~ 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG-Q 187 (317)
T ss_dssp CSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-C
T ss_pred cCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc---------ccc-c
Confidence 44556666666665542 34455556666666666666664444444 245666666666666432 111 1
Q ss_pred cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584 196 ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 196 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++.|
T Consensus 188 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 235666666666666654 3444566666666666666666 455556666666666666666663
No 83
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.4e-17 Score=138.69 Aligned_cols=112 Identities=23% Similarity=0.233 Sum_probs=65.8
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
++++|++++|.+++..+. ..+..+++|++|+|++|.+++. .|..+.++++|++|+|++|++++..+..+..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 556666666666543322 1255666666666666666543 45556666666666666666665555556666666666
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
++++|+++ +..|..+..+++|++|++++|.+.+.
T Consensus 108 ~L~~N~l~--------~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 108 NLYDNQIS--------CVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ECCSSCCC--------EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCC--------eeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 66666643 23345556666666666666666554
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=9.6e-17 Score=144.82 Aligned_cols=148 Identities=28% Similarity=0.324 Sum_probs=111.4
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++++.|++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++ + +.+..+++|+
T Consensus 67 l~~L~~L~L~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~ 137 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIK----PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 137 (291)
T ss_dssp CTTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred CCCCCEEEccCCccCCCc----ccccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence 357888888888877543 26778888888888888763 33 47788888888888888874 3 4577788888
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|++++ + ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 138 ~L~l~~n~l~~---------~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~ 203 (291)
T 1h6t_A 138 SLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 203 (291)
T ss_dssp EEECCSSCCCC---------C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred EEEccCCcCCc---------c-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 88888887642 2 457778888888888888886544 7788888888888888884 44 377888888
Q ss_pred eeeccCCCCCC
Q 019584 251 FLGLCGGPLSK 261 (338)
Q Consensus 251 ~L~l~~N~l~~ 261 (338)
.|++++|+++.
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 88888888775
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=1.9e-17 Score=136.86 Aligned_cols=134 Identities=25% Similarity=0.268 Sum_probs=75.0
Q ss_pred cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~ 197 (338)
++|+.|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|++++|+++ ..+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF--------GGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC--------SCCCHHHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc--------hHHHHHHhh
Confidence 44555555555554112454455555566666666655532 44555566666666666543 224555555
Q ss_pred CCCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCc---hhccCCCCCCeeeccCCCCCC
Q 019584 198 LTNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~~ 261 (338)
+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 666666666666665421 1556666666666666666664333 356666666666666666543
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.6e-17 Score=146.90 Aligned_cols=148 Identities=23% Similarity=0.262 Sum_probs=129.1
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+... + .+..+++|+.|++++|.++. ++. +.++++|++|++++|.+++ ++ .+..+++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred CcccEEEccCCCcccC--h--hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 5799999999998754 2 68889999999999999985 444 9999999999999999984 44 4899999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ + ..+..+++|++|++++|.+++. +.+..+++|++|++++|++++..+ +..+++|+.
T Consensus 117 L~L~~n~i~~---------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 117 LSLEHNGISD---------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EECTTSCCCC---------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EECCCCcCCC---------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 9999999752 2 4578899999999999999975 678999999999999999996544 889999999
Q ss_pred eeccCCCCCCc
Q 019584 252 LGLCGGPLSKK 262 (338)
Q Consensus 252 L~l~~N~l~~~ 262 (338)
|++++|.+++.
T Consensus 183 L~L~~N~i~~l 193 (291)
T 1h6t_A 183 LYLSKNHISDL 193 (291)
T ss_dssp EECCSSCCCBC
T ss_pred EECCCCcCCCC
Confidence 99999999873
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=3.4e-17 Score=135.38 Aligned_cols=139 Identities=25% Similarity=0.286 Sum_probs=120.1
Q ss_pred CCcEEEEEeCCCCce-eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 91 TGHVVELDLASSCLY-GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
.++++.|++++|.++ +.++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 468999999999998 67777 78999999999999999975 4 678899999999999999997788888889999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc---hhcccCCCCCeeecccccCcccCchh
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP---HTLANLSSLRFSSLSGCRLQGEFPQE 242 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~~p~~ 242 (338)
++|++++|.++++ ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|..
T Consensus 98 ~~L~Ls~N~l~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNKLKDI-------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CEEECBSSSCCSS-------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CEEeccCCccCcc-------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 9999999997531 123678899999999999999997554 47899999999999999988 55543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=1.1e-16 Score=145.48 Aligned_cols=147 Identities=22% Similarity=0.326 Sum_probs=104.7
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+... + .+..+++|++|++++|.++. ++. +..+++|++|++++|.+++ ++ .+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~l--~--~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI--E--GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred CCcCEEEeeCCCccCc--h--hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 5899999999998752 2 68889999999999999975 555 9999999999999999984 44 6899999999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ ++. +..+++|++|++++|.+++..+ +..+++|++|++++|++++ ++. +..+++|+.
T Consensus 112 L~l~~n~l~~---------~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 112 LDLTSTQITD---------VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp EECTTSCCCC---------CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred EECCCCCCCC---------chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 9999999764 222 5556666666666666654322 5555555555555555553 222 445555555
Q ss_pred eeccCCCCCC
Q 019584 252 LGLCGGPLSK 261 (338)
Q Consensus 252 L~l~~N~l~~ 261 (338)
|++++|.+++
T Consensus 178 L~l~~n~l~~ 187 (308)
T 1h6u_A 178 LKADDNKISD 187 (308)
T ss_dssp EECCSSCCCC
T ss_pred EECCCCccCc
Confidence 5555555543
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-17 Score=161.34 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=112.3
Q ss_pred cCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhc-CCCCCCEEEccCCCCCcccccccCCCcchh
Q 019584 116 QLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLSYSNFDTFYLKLQKPGLANL 194 (338)
Q Consensus 116 ~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~ 194 (338)
.+++|+.|++++|.+++. .|..+..+++|++|+|++|.+++..|..+. .+++|++|+|++|.+++ ++.
T Consensus 118 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~---------~~~- 186 (487)
T 3oja_A 118 RGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---------VKG- 186 (487)
T ss_dssp CCSSCEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE---------EEC-
T ss_pred ccCCCCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc---------ccc-
Confidence 357888899999988764 677788899999999999999987887775 78999999999998753 222
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 195 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
...+++|++|++++|.+++ +|+.+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++.|.+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcc
Confidence 3358999999999999987 5556889999999999999999 47888888999999999999998543
No 90
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=6.1e-17 Score=135.04 Aligned_cols=112 Identities=22% Similarity=0.193 Sum_probs=63.8
Q ss_pred cCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584 118 VHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 118 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~ 197 (338)
++|+.|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ +..+..+..
T Consensus 28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~ 98 (177)
T 2o6r_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ--------SLPNGVFDK 98 (177)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTT
T ss_pred CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc--------ccCHHHhhC
Confidence 5667777777776543 3444566666777777766666443444566666666666666643 222334455
Q ss_pred CCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCccc
Q 019584 198 LTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGE 238 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 238 (338)
+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55666666666655543333345555555555555555543
No 91
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=2.4e-17 Score=133.49 Aligned_cols=130 Identities=25% Similarity=0.283 Sum_probs=92.4
Q ss_pred CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhc
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAE 196 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~ 196 (338)
.++|+.|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.++ +.+|..+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~ 85 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS--------GGLEVLAE 85 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC--------SCTHHHHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc--------chHHHHhh
Confidence 456777777777776222666667777777777777777744 56777777888888887754 33666666
Q ss_pred CCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCcccCc---hhccCCCCCCeeeccC
Q 019584 197 NLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGEFP---QEIFQLPNLQFLGLCG 256 (338)
Q Consensus 197 ~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~l~~ 256 (338)
.+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777888888888877762 33677788888888888888875544 4677788888887763
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=9.8e-18 Score=153.05 Aligned_cols=161 Identities=18% Similarity=0.128 Sum_probs=104.9
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCch-----------------hhhcCCCCcEEEcccc
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPS-----------------AILNFSRLTHLNLSQS 153 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~-----------------~l~~l~~L~~L~Ls~n 153 (338)
..+++.|++++|.+++.. .+..+++|++|++++|.+++ ++. ....+++|++|++++|
T Consensus 57 l~~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~--l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N 130 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETL----DLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130 (317)
T ss_dssp CTTCCEEECTTSCCEEEE----EETTCTTCCEEECCSSEEEE--EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS
T ss_pred CCcCCEEECCCCcCCcch----hhhhcCCCCEEECcCCcccc--ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCC
Confidence 356777777777776544 26677777777777776643 110 0112345555566666
Q ss_pred cCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhh-cCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccc
Q 019584 154 YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLA-ENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSG 232 (338)
Q Consensus 154 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 232 (338)
.+++..+..+..+++|++|++++|.+++ ..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~ 200 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSS 200 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCE--------EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCS
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCc--------ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCC
Confidence 6654444456666677777777776542 223333 4678888888888888753 32 33578888888888
Q ss_pred ccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584 233 CRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 233 N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
|++++ +|..+..+++|+.|++++|.++. +|..+..
T Consensus 201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 201 NKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp SCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred CcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence 88884 55568888889999999998884 5654433
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=8.8e-17 Score=142.96 Aligned_cols=147 Identities=18% Similarity=0.253 Sum_probs=126.8
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|+++.. + .+..+++|+.|++++|.++. ++. +.++++|++|++++|++++ +|.. .. ++|++
T Consensus 41 ~~L~~L~l~~n~i~~l-~---~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL-A---GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSR 110 (263)
T ss_dssp TTCSEEECTTSCCCCC-T---TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCE
T ss_pred CcCcEEECcCCCcccc-h---HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccE
Confidence 5899999999998743 2 68889999999999999985 555 9999999999999999994 5543 33 99999
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ + ..+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.
T Consensus 111 L~L~~N~l~~---------~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 111 LFLDNNELRD---------T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp EECCSSCCSB---------S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred EEccCCccCC---------C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 9999999752 3 3588999999999999999874 4 689999999999999999965 67889999999
Q ss_pred eeccCCCCCCc
Q 019584 252 LGLCGGPLSKK 262 (338)
Q Consensus 252 L~l~~N~l~~~ 262 (338)
|++++|++++.
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 99999999876
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.8e-17 Score=160.14 Aligned_cols=170 Identities=15% Similarity=0.108 Sum_probs=144.0
Q ss_pred cccceeEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh-cCCCCcEEEcccccCccc
Q 019584 80 CSWDGVKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL-NFSRLTHLNLSQSYFSGQ 158 (338)
Q Consensus 80 c~w~gv~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~ 158 (338)
|.+.++.|.. .++++.|++++|.+++..+. .+..+++|+.|++++|.+++. .|..+. .+++|++|+|++|.+++.
T Consensus 109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCSR-GQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEECC-CSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCccc-cCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccccc
Confidence 4455566643 46899999999999988777 889999999999999999875 677775 799999999999999955
Q ss_pred cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCc-c
Q 019584 159 IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ-G 237 (338)
Q Consensus 159 ~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ 237 (338)
|. ...+++|++|+|++|.++ .+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~---------~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLA---------FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCC---------EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred -cc-cccCCCCCEEECCCCCCC---------CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 33 446899999999999975 355568899999999999999996 7888999999999999999998 6
Q ss_pred cCchhccCCCCCCeeecc-------CCCCCCcCCC
Q 019584 238 EFPQEIFQLPNLQFLGLC-------GGPLSKKCNN 265 (338)
Q Consensus 238 ~~p~~l~~l~~L~~L~l~-------~N~l~~~~p~ 265 (338)
.+|..+..++.|+.+++. .|+..|.+|.
T Consensus 253 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred chHHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 788888899999999987 7777777764
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=5.4e-17 Score=159.16 Aligned_cols=144 Identities=20% Similarity=0.249 Sum_probs=97.4
Q ss_pred cccee-EEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCcccc
Q 019584 81 SWDGV-KCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQI 159 (338)
Q Consensus 81 ~w~gv-~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 159 (338)
.|.++ .|.. .+++.|++++|++++ +|. .+ +++|++|+|++|.++. +| ..+++|++|++++|.+++ +
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-i 115 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-L 115 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-C
T ss_pred hhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-c
Confidence 68888 6754 378999999999986 554 44 3788889999888873 66 457888888888888885 7
Q ss_pred chhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccC
Q 019584 160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEF 239 (338)
Q Consensus 160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 239 (338)
|. +.. +|++|++++|++++ +|. .+++|++|++++|.+++ +|. .+++|++|+|++|++++ +
T Consensus 116 p~-l~~--~L~~L~Ls~N~l~~---------lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNNQLTM---------LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp CC-CCT--TCCEEECCSSCCSC---------CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred ch-hhc--CCCEEECCCCcCCC---------CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-c
Confidence 76 544 78888888887642 333 45666666666666664 443 34556666666666653 4
Q ss_pred chhccCCCCCCeeeccCCCCC
Q 019584 240 PQEIFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 240 p~~l~~l~~L~~L~l~~N~l~ 260 (338)
|. +. ++|+.|++++|.++
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS
T ss_pred ch-hh--CCCCEEECcCCCCC
Confidence 44 33 55556666665555
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=7.2e-18 Score=154.64 Aligned_cols=163 Identities=25% Similarity=0.323 Sum_probs=90.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+.+..+. +..+++|++|++++|.++...++..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 3556666666666554333 3456666666666666543224555666666666666666666556666666666666
Q ss_pred EEccCC-CCCcccccccCCCcchhhcCCCCCCEEEccCC-CCCCC-CchhcccCC-CCCeeecccc--cCc-ccCchhcc
Q 019584 172 LDLSYS-NFDTFYLKLQKPGLANLAENLTNLKALDLINV-HISST-VPHTLANLS-SLRFSSLSGC--RLQ-GEFPQEIF 244 (338)
Q Consensus 172 L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N--~l~-~~~p~~l~ 244 (338)
|++++| .+++ ..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+.
T Consensus 147 L~L~~~~~l~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~ 219 (336)
T 2ast_B 147 LNLSGCSGFSE-------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR 219 (336)
T ss_dssp EECTTCBSCCH-------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred EECCCCCCCCH-------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence 666666 4331 123444555555666666655 55432 344455555 5555555555 333 23444444
Q ss_pred CCCCCCeeeccCCC-CCCcCC
Q 019584 245 QLPNLQFLGLCGGP-LSKKCN 264 (338)
Q Consensus 245 ~l~~L~~L~l~~N~-l~~~~p 264 (338)
.+++|++|++++|. +++..+
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGG
T ss_pred hCCCCCEEeCCCCCcCCHHHH
Confidence 55555555555555 444333
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=2.5e-16 Score=145.11 Aligned_cols=153 Identities=25% Similarity=0.286 Sum_probs=128.9
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++++.|++++|.+.+.. .+..+++|+.|++++|.++. .+. +..+++|++|++++|.+++ ++. +..+++|+
T Consensus 176 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~ 246 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDIS----PLASLTSLHYFTAYVNQITD--ITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLT 246 (347)
T ss_dssp CTTCSEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred CCCCCEEEccCCcccccc----cccCCCccceeecccCCCCC--Cch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCC
Confidence 468999999999987543 47789999999999999875 333 8889999999999999984 444 88899999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.+++ + +.+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++|+
T Consensus 247 ~L~l~~n~l~~---------~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 247 WLEIGTNQISD---------I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp EEECCSSCCCC---------C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred EEECCCCccCC---------C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 99999998642 2 3577889999999999999864 4578899999999999999988888899999999
Q ss_pred eeeccCCCCCCcCC
Q 019584 251 FLGLCGGPLSKKCN 264 (338)
Q Consensus 251 ~L~l~~N~l~~~~p 264 (338)
+|++++|++++..|
T Consensus 315 ~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 315 TLFLSQNHITDIRP 328 (347)
T ss_dssp EEECCSSSCCCCGG
T ss_pred EEEccCCccccccC
Confidence 99999999988766
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=9.5e-18 Score=169.55 Aligned_cols=147 Identities=25% Similarity=0.294 Sum_probs=119.1
Q ss_pred CCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCC
Q 019584 90 DTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNL 169 (338)
Q Consensus 90 ~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (338)
...+++.|+|++|.+. .++. .+..+++|++|+|++|.++ . +|..+.++++|++|+|++|.|+ .+|..++.+++|
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred cCCCCcEEECCCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3467899999999998 5665 6779999999999999998 3 8999999999999999999999 889999999999
Q ss_pred CEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCC-CCeeecccccCcccCchhccCCCC
Q 019584 170 EVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSS-LRFSSLSGCRLQGEFPQEIFQLPN 248 (338)
Q Consensus 170 ~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~ 248 (338)
++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..+
T Consensus 296 ~~L~L~~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l----- 361 (727)
T 4b8c_D 296 KYFYFFDNMVT---------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER----- 361 (727)
T ss_dssp SEEECCSSCCC---------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------
T ss_pred CEEECCCCCCC---------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc-----
Confidence 99999999863 57777999999999999999999988888765432 2357899999998888644
Q ss_pred CCeeeccCC
Q 019584 249 LQFLGLCGG 257 (338)
Q Consensus 249 L~~L~l~~N 257 (338)
+.|+++.|
T Consensus 362 -~~l~l~~n 369 (727)
T 4b8c_D 362 -RFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred -ceeEeecc
Confidence 45566665
No 99
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=4.3e-16 Score=143.44 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=116.6
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.|++++|.+.+.. .+..+++|+.|++++|.+.. ++. +..+++|++|++++|.+++..+ +..+++|+
T Consensus 154 l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVT----PIANLTDLYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred CCCCcEEEecCCCcCCch----hhccCCCCCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 457888888888876543 36778888888888888864 443 7788888888888888884433 77888888
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|.+++ ++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+++ + ..+..+++|+
T Consensus 225 ~L~l~~n~l~~---------~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~ 290 (347)
T 4fmz_A 225 SLKIGNNKITD---------LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLN 290 (347)
T ss_dssp EEECCSSCCCC---------CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred EEEccCCccCC---------Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCC
Confidence 88888888642 233 77888888888888888763 457788888888888888884 3 3577788888
Q ss_pred eeeccCCCCCCcCCCC
Q 019584 251 FLGLCGGPLSKKCNNS 266 (338)
Q Consensus 251 ~L~l~~N~l~~~~p~~ 266 (338)
.|++++|.+++..|..
T Consensus 291 ~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEV 306 (347)
T ss_dssp EEECCSSCCCGGGHHH
T ss_pred EEECcCCcCCCcChhH
Confidence 8888888888766543
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=4.4e-17 Score=131.95 Aligned_cols=129 Identities=24% Similarity=0.288 Sum_probs=112.9
Q ss_pred CcEEEEEeCCCCce-eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLY-GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
++++.|++++|.++ +.++. .+..+++|++|++++|.++. + ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 57999999999998 67777 78999999999999999975 3 6788999999999999999977888888899999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc---hhcccCCCCCeeeccc
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP---HTLANLSSLRFSSLSG 232 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~ 232 (338)
+|++++|.+++. ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 92 ~L~ls~N~i~~~-------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDL-------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSH-------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCCh-------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999997531 234778999999999999999997655 5789999999999874
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=3.6e-16 Score=154.60 Aligned_cols=149 Identities=28% Similarity=0.331 Sum_probs=130.0
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++++.|+|++|.+.+.. .+..+++|+.|+|++|.++. +| .+..+++|++|+|++|.+++ + +.+..+++|+
T Consensus 64 l~~L~~L~Ls~N~l~~~~----~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 134 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIK----PLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 134 (605)
T ss_dssp CTTCCEEECTTSCCCCCG----GGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS
T ss_pred CCCCCEEEeeCCCCCCCh----hhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC
Confidence 468999999999998654 37899999999999999974 44 68999999999999999995 4 4688999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
.|+|++|.+++ + ..+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.+++ +| .+..+++|+
T Consensus 135 ~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~ 200 (605)
T 1m9s_A 135 SLYLGNNKITD---------I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLD 200 (605)
T ss_dssp EEECCSSCCCC---------C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCS
T ss_pred EEECCCCccCC---------c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCC
Confidence 99999999652 2 568899999999999999998666 8999999999999999995 44 688999999
Q ss_pred eeeccCCCCCCc
Q 019584 251 FLGLCGGPLSKK 262 (338)
Q Consensus 251 ~L~l~~N~l~~~ 262 (338)
.|+|++|++++.
T Consensus 201 ~L~L~~N~l~~~ 212 (605)
T 1m9s_A 201 VLELFSQECLNK 212 (605)
T ss_dssp EEECCSEEEECC
T ss_pred EEEccCCcCcCC
Confidence 999999998875
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=7.9e-18 Score=154.37 Aligned_cols=157 Identities=28% Similarity=0.303 Sum_probs=118.2
Q ss_pred CcEEEEEeCCCCceee-cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc-cCccc-cchhhcCCCC
Q 019584 92 GHVVELDLASSCLYGS-INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS-YFSGQ-IPAELLELSN 168 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~ 168 (338)
.++++|++++|.+.+. ++. .+..+++|++|++++|.+++. .+..+..+++|++|++++| .+++. ++..+..+++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp BCCCEEECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCEEEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 5788899988887755 555 677788888888888887654 6777888888888888888 67653 6666778888
Q ss_pred CCEEEccCC-CCCcccccccCCCcchhhcCCC-CCCEEEccCC--CCC-CCCchhcccCCCCCeeeccccc-CcccCchh
Q 019584 169 LEVLDLSYS-NFDTFYLKLQKPGLANLAENLT-NLKALDLINV--HIS-STVPHTLANLSSLRFSSLSGCR-LQGEFPQE 242 (338)
Q Consensus 169 L~~L~Ls~N-~l~~~~l~~~~~~~~~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~ 242 (338)
|++|++++| .+++ ..++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..
T Consensus 170 L~~L~l~~~~~l~~-------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 170 LDELNLSWCFDFTE-------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp CCEEECCCCTTCCH-------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred CCEEcCCCCCCcCh-------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 888888888 7542 12556677777 8888888887 454 3456666777888888888887 66666777
Q ss_pred ccCCCCCCeeeccCCC
Q 019584 243 IFQLPNLQFLGLCGGP 258 (338)
Q Consensus 243 l~~l~~L~~L~l~~N~ 258 (338)
+..+++|++|++++|.
T Consensus 243 l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGCTTCCEEECTTCT
T ss_pred HhCCCCCCEeeCCCCC
Confidence 7777888888888775
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.5e-16 Score=135.14 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=117.9
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
....+++|+.|++++|.++. +| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|+++ ...+
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~--------~~~~ 105 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVT--------SDKI 105 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCB--------GGGS
T ss_pred ChhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccC--------cccC
Confidence 34678899999999999973 66 6899999999999999776 33 47889999999999999965 3456
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeeccccc-CcccCchhccCCCCCCeeeccCCCCCC
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCR-LQGEFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
..+..+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 778899999999999999998889999999999999999998 65 666 68899999999999999986
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=4.5e-16 Score=153.97 Aligned_cols=149 Identities=23% Similarity=0.259 Sum_probs=130.1
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..+++.|++++|.+... + .+..+++|+.|+|++|.++. ++. +..+++|++|+|++|.+++ +| .+..+++|+
T Consensus 42 L~~L~~L~l~~n~i~~l--~--~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--Q--GIQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--T--TGGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred CCCCCEEECcCCCCCCC--h--HHccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 35789999999998753 2 68899999999999999985 444 8999999999999999984 44 789999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|+|++|.+++ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+
T Consensus 113 ~L~Ls~N~l~~---------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 113 SLSLEHNGISD---------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp EEECTTSCCCC---------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred EEEecCCCCCC---------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 99999999652 2 3578899999999999999975 678999999999999999997655 88999999
Q ss_pred eeeccCCCCCCc
Q 019584 251 FLGLCGGPLSKK 262 (338)
Q Consensus 251 ~L~l~~N~l~~~ 262 (338)
.|+|++|.+++.
T Consensus 179 ~L~Ls~N~i~~l 190 (605)
T 1m9s_A 179 NLYLSKNHISDL 190 (605)
T ss_dssp EEECCSSCCCBC
T ss_pred EEECcCCCCCCC
Confidence 999999999874
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=1.1e-15 Score=146.64 Aligned_cols=150 Identities=24% Similarity=0.327 Sum_probs=76.0
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
++++.|++++|.+.+. + .+..+++|+.|++++|.+++. +. +..+++|++|++++|.+++ ++. +..+++|++
T Consensus 221 ~~L~~L~l~~n~l~~~--~--~l~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~ 291 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDI--G--TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISN-ISP-LAGLTALTN 291 (466)
T ss_dssp TTCCEEECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSE
T ss_pred CCCCEEECCCCCcccc--h--hhhcCCCCCEEECCCCccccc--hh-hhcCCCCCEEECCCCccCc-ccc-ccCCCccCe
Confidence 3455555555554432 1 345555666666666655432 22 5555666666666666553 222 555566666
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ ++. +..+++|++|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.
T Consensus 292 L~L~~n~l~~---------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 292 LELNENQLED---------ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp EECCSSCCSC---------CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred EEcCCCcccC---------chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCE
Confidence 6666665432 111 4455555555555555554333 44555555555555555532 23445555555
Q ss_pred eeccCCCCCCcCC
Q 019584 252 LGLCGGPLSKKCN 264 (338)
Q Consensus 252 L~l~~N~l~~~~p 264 (338)
|++++|++++..|
T Consensus 358 L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 358 LSAGHNQISDLTP 370 (466)
T ss_dssp EECCSSCCCBCGG
T ss_pred EeCCCCccCccch
Confidence 5555555554443
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=1.4e-17 Score=156.07 Aligned_cols=169 Identities=20% Similarity=0.211 Sum_probs=107.0
Q ss_pred CcEEEEEeCCCCceeecCC--CCccccC---------cCccEEEccCCCCCCCCCc---hhhhcCCCCcEEEcccccCcc
Q 019584 92 GHVVELDLASSCLYGSINS--TSSLFQL---------VHLQRLSLFDNNFNFSEIP---SAILNFSRLTHLNLSQSYFSG 157 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~--~~~l~~l---------~~L~~L~L~~n~l~~~~~p---~~l~~l~~L~~L~Ls~n~l~~ 157 (338)
++++.|+|++|.+++..+. ...+..+ ++|++|++++|.++...++ ..+..+++|++|++++|.++.
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 4566666666666432221 0012222 6677777777766532244 355566777777777777662
Q ss_pred -----ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----Cchhccc--CCCCC
Q 019584 158 -----QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLAN--LSSLR 226 (338)
Q Consensus 158 -----~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~ 226 (338)
..|..+..+++|++|+|++|.++.... ..+|..+..+++|++|++++|.+++. ++..+.. +++|+
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 233356667777777777777532100 13566677788888888888888764 4555533 78888
Q ss_pred eeecccccCcc----cCchhc-cCCCCCCeeeccCCCCCCcCC
Q 019584 227 FSSLSGCRLQG----EFPQEI-FQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 227 ~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~p 264 (338)
+|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88888888886 377766 557888888888888887664
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.65 E-value=9.2e-16 Score=147.27 Aligned_cols=148 Identities=26% Similarity=0.360 Sum_probs=129.4
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.++++.|++++|.+.+.. .+..+++|+.|++++|.+++ ++. +..+++|++|++++|.+++..+ +..+++|+
T Consensus 242 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp CTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred CCCCCEEECCCCccccch----hhhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 468999999999998654 47889999999999999985 444 8899999999999999996433 88999999
Q ss_pred EEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCC
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQ 250 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 250 (338)
+|++++|++++ ..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+
T Consensus 313 ~L~L~~n~l~~--------~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 313 YLTLYFNNISD--------ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp EEECCSSCCSC--------CGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred EEECcCCcCCC--------chh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 99999999752 333 67899999999999999975 578999999999999999998776 88999999
Q ss_pred eeeccCCCCCC
Q 019584 251 FLGLCGGPLSK 261 (338)
Q Consensus 251 ~L~l~~N~l~~ 261 (338)
.|++++|++++
T Consensus 379 ~L~l~~n~~~~ 389 (466)
T 1o6v_A 379 QLGLNDQAWTN 389 (466)
T ss_dssp EEECCCEEEEC
T ss_pred EEeccCCcccC
Confidence 99999999988
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=7.7e-16 Score=136.83 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=123.4
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
+++.++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|
T Consensus 20 ~l~~l~l~~~~i~~~~----~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV----SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHTCSCTTSEE----CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEE
T ss_pred HHHHHHhcCCCccccc----chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEE
Confidence 4566778888887543 47789999999999999974 55 68999999999999999995 554 9999999999
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 252 (338)
++++|++++ ++... . ++|++|++++|.+++ + +.+..+++|++|++++|++++ ++ .+..+++|+.|
T Consensus 91 ~L~~N~l~~---------l~~~~-~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 91 SVNRNRLKN---------LNGIP-S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL 155 (263)
T ss_dssp ECCSSCCSC---------CTTCC-C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred ECCCCccCC---------cCccc-c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence 999999753 33322 2 899999999999987 3 458999999999999999995 44 68899999999
Q ss_pred eccCCCCCCc
Q 019584 253 GLCGGPLSKK 262 (338)
Q Consensus 253 ~l~~N~l~~~ 262 (338)
++++|.+++.
T Consensus 156 ~L~~N~i~~~ 165 (263)
T 1xeu_A 156 DLHGNEITNT 165 (263)
T ss_dssp ECTTSCCCBC
T ss_pred ECCCCcCcch
Confidence 9999999986
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=128.06 Aligned_cols=131 Identities=26% Similarity=0.348 Sum_probs=115.6
Q ss_pred cEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCC
Q 019584 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN 200 (338)
Q Consensus 121 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~ 200 (338)
+.+++++|.++. +|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.++ ...+..+.++++
T Consensus 13 ~~l~~~~~~l~~--ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~--------~i~~~~f~~l~~ 79 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--------TLSNQSFSNMTQ 79 (193)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC--------CCCTTTTTTCTT
T ss_pred CEEEcCCCCCCc--CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC--------EeCHhHccCCCC
Confidence 578999999873 67654 368999999999999 88899999999999999999975 345567899999
Q ss_pred CCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
|++|++++|.+++..|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++.|.|+
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9999999999998888889999999999999999996555578899999999999999999886
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=5.3e-16 Score=152.10 Aligned_cols=143 Identities=22% Similarity=0.288 Sum_probs=103.3
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|+|++|.+++ +|. .+++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~---l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~ 164 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE---LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV 164 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred CCCCEEEccCCCCCC-cch---hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence 466667777776665 332 222 67777777777764 454 56777777777777774 555 4677788
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCC-------CeeecccccCcccCchhcc
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSL-------RFSSLSGCRLQGEFPQEIF 244 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~ 244 (338)
|++++|+++ .+|. +. ++|++|++++|.++ .+|. +.. +| +.|+|++|+|+ .+|..+.
T Consensus 165 L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 165 LSVRNNQLT---------FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp EECCSSCCS---------CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGG
T ss_pred EECCCCCCC---------Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHh
Confidence 888887754 2454 44 88999999999988 4666 554 67 99999999999 6888888
Q ss_pred CCCCCCeeeccCCCCCCcCCCC
Q 019584 245 QLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 245 ~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
.+++|+.|++++|++++.+|..
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHH
Confidence 8999999999999999987754
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=2.6e-17 Score=154.14 Aligned_cols=68 Identities=24% Similarity=0.214 Sum_probs=31.6
Q ss_pred hhcCCCCCCEEEccCCCCC----CCCchhcccCCCCCeeecccccCccc----CchhccC--CCCCCeeeccCCCCCC
Q 019584 194 LAENLTNLKALDLINVHIS----STVPHTLANLSSLRFSSLSGCRLQGE----FPQEIFQ--LPNLQFLGLCGGPLSK 261 (338)
Q Consensus 194 ~~~~l~~L~~L~Ls~N~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~--l~~L~~L~l~~N~l~~ 261 (338)
.+..+++|++|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|+.|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 3444455555555555543 23444444455555555555554433 2333322 4455555555555544
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=2.7e-15 Score=124.98 Aligned_cols=114 Identities=22% Similarity=0.203 Sum_probs=96.9
Q ss_pred CCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccC
Q 019584 143 SRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANL 222 (338)
Q Consensus 143 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 222 (338)
++|++|++++|.+++..+..+..+++|++|++++|+++ ...+..+..+++|++|++++|.+++..+..+..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--------SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--------EeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 68999999999999655566788999999999999965 3344567889999999999999998777778889
Q ss_pred CCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 223 SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 223 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
++|++|++++|++++..+..+..+++|++|++++|++.|.||
T Consensus 100 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999999999999996555556789999999999999999887
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=7.1e-16 Score=142.66 Aligned_cols=181 Identities=18% Similarity=0.156 Sum_probs=135.7
Q ss_pred CcccceeEEcCC---------CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcE-
Q 019584 79 CCSWDGVKCNED---------TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTH- 147 (338)
Q Consensus 79 ~c~w~gv~c~~~---------~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~- 147 (338)
.|.+..|.|.+. ..++++|+|++|+|+...+. .|.++++|++|+|++|.+... +| ..|.+++++++
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEI 84 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhh
Confidence 378999999632 35789999999999966555 789999999999999998654 44 46788888775
Q ss_pred EEcccccCccccchhhcCCCCCCEEEccCCCCCcccc------------cccC----CCcc-hhhcCC-CCCCEEEccCC
Q 019584 148 LNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYL------------KLQK----PGLA-NLAENL-TNLKALDLINV 209 (338)
Q Consensus 148 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l------------~~~~----~~~~-~~~~~l-~~L~~L~Ls~N 209 (338)
+.+++|+++...|..|..+++|++|++++|+++...- .... ..++ ..+..+ ..+++|++++|
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred hcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 5667799996667788999999999999999865310 0000 1111 223333 46888999999
Q ss_pred CCCCCCchhcccCCCCCeeeccc-ccCcccCch-hccCCCCCCeeeccCCCCCCcCC
Q 019584 210 HISSTVPHTLANLSSLRFSSLSG-CRLQGEFPQ-EIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 210 ~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
+++. +|.......+|+.|++++ |.++ .+|. .+..+++|++|++++|.++.-.+
T Consensus 165 ~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 165 GIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp CCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCS
T ss_pred cccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccCh
Confidence 9985 566555667899999985 5666 6664 67889999999999999986433
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=1e-15 Score=127.57 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=92.1
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcC-CCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNF-SRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGL 191 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~ 191 (338)
.+.++.+|+.|++++|.++. +|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.++ .+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---------~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---------RI 79 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---------EE
T ss_pred hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---------cc
Confidence 45566777777777777763 444 3333 3788888888877743 56777778888888888754 23
Q ss_pred c-hhhcCCCCCCEEEccCCCCCCCCch--hcccCCCCCeeecccccCcccCchh----ccCCCCCCeeeccCCCCC
Q 019584 192 A-NLAENLTNLKALDLINVHISSTVPH--TLANLSSLRFSSLSGCRLQGEFPQE----IFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 192 ~-~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~l~~N~l~ 260 (338)
| ..+..+++|++|++++|.++. +|. .+..+++|++|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 344677888888888888753 554 6777788888888888887 45553 677788888888777654
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=7.4e-17 Score=149.94 Aligned_cols=165 Identities=19% Similarity=0.212 Sum_probs=113.6
Q ss_pred cEEEEEeCCCCceeecCCCCccccC-----cCccEEEccCCCCCCCCCchh----hhcC-CCCcEEEcccccCccccchh
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQL-----VHLQRLSLFDNNFNFSEIPSA----ILNF-SRLTHLNLSQSYFSGQIPAE 162 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~~p~~ 162 (338)
++++|+|++|.+++..+. .+..+ ++|++|++++|.++.. .+.. +..+ ++|++|++++|.+++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 688888888887765444 45443 7788888888887654 4443 3344 78888888888887555444
Q ss_pred h----cC-CCCCCEEEccCCCCCcccccccCCCcchhhcCCC-CCCEEEccCCCCCCCCchhcc----cC-CCCCeeecc
Q 019584 163 L----LE-LSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLT-NLKALDLINVHISSTVPHTLA----NL-SSLRFSSLS 231 (338)
Q Consensus 163 l----~~-l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~Ls 231 (338)
+ .. .++|++|++++|.+++.... .++..+..++ +|++|++++|.+++..+..+. .+ ++|++|+|+
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSD----ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHH----HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 3 23 25888888888886532111 3445556665 899999999998876665444 44 589999999
Q ss_pred cccCccc----CchhccC-CCCCCeeeccCCCCCCcCC
Q 019584 232 GCRLQGE----FPQEIFQ-LPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 232 ~N~l~~~----~p~~l~~-l~~L~~L~l~~N~l~~~~p 264 (338)
+|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 9998863 4555555 3589999999999887543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.6e-17 Score=163.23 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=127.1
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCC-------------CCCCCCchhhhc-----------------
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNN-------------FNFSEIPSAILN----------------- 141 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~p~~l~~----------------- 141 (338)
.+++.|+|++|.++ .+|. .++++++|+.|++++|. +.+. .|..+..
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccceeccCChhhHH-hhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccch
Confidence 45667888888886 5666 78888888888887664 2221 2322111
Q ss_pred ---------------CCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEc
Q 019584 142 ---------------FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDL 206 (338)
Q Consensus 142 ---------------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~L 206 (338)
...|++|+|++|.+++ +|. ++.+++|++|+|++|.++ .+|..+..+++|++|++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~---------~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR---------ALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC---------CCCGGGGGCTTCCEEEC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc---------ccchhhhcCCCCCEEEC
Confidence 1258899999999994 776 999999999999999964 57888999999999999
Q ss_pred cCCCCCCCCchhcccCCCCCeeecccccCcccC-chhccCCCCCCeeeccCCCCCCcCC
Q 019584 207 INVHISSTVPHTLANLSSLRFSSLSGCRLQGEF-PQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 207 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999997 67 8999999999999999999776 9999999999999999999998765
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=1.1e-16 Score=148.89 Aligned_cols=163 Identities=20% Similarity=0.178 Sum_probs=90.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccc----cC-cCccEEEccCCCCCCCCCchhhh----c-CCCCcEEEcccccCccc---
Q 019584 92 GHVVELDLASSCLYGSINSTSSLF----QL-VHLQRLSLFDNNFNFSEIPSAIL----N-FSRLTHLNLSQSYFSGQ--- 158 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~p~~l~----~-l~~L~~L~Ls~n~l~~~--- 158 (338)
.++++|+|++|.+++..+. .+. .+ ++|++|++++|.++.. .+..+. . .++|++|+|++|.+++.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred CCccEEECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 4677777777776644332 222 23 6677777777776543 333332 2 24677777777776643
Q ss_pred -cchhhcCCC-CCCEEEccCCCCCcccccccCCCcchhhcCC-CCCCEEEccCCCCCCC----CchhcccC-CCCCeeec
Q 019584 159 -IPAELLELS-NLEVLDLSYSNFDTFYLKLQKPGLANLAENL-TNLKALDLINVHISST----VPHTLANL-SSLRFSSL 230 (338)
Q Consensus 159 -~p~~l~~l~-~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L 230 (338)
++..+..++ +|++|++++|++++... ..+...+... ++|++|++++|.+++. ++..+... ++|++|+|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 233334444 67777777776542110 0122334444 3777777777776653 33444442 46777777
Q ss_pred ccccCcccCch----hccCCCCCCeeeccCCCCCC
Q 019584 231 SGCRLQGEFPQ----EIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 231 s~N~l~~~~p~----~l~~l~~L~~L~l~~N~l~~ 261 (338)
++|.+++..+. .+..+++|+.|++++|.+..
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 77777654332 23455667777777776443
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=3.8e-15 Score=142.75 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=83.4
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
+++++|++++|.+++. .+..+++|++|++++|.+++ ++ +.++++|++|++++|.+++ +| +..+++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp TTCSEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred CCCCEEEccCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 3455555555555442 14455555555555555543 22 4555555555555555553 33 455555555
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ ++ +..+++|++|++++|...+.+ .++.+++|++|++++|++++ +| +..+++|+.
T Consensus 132 L~l~~N~l~~---------l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~ 195 (457)
T 3bz5_A 132 LNCARNTLTE---------ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNR 195 (457)
T ss_dssp EECTTSCCSC---------CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCE
T ss_pred EECCCCccce---------ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCE
Confidence 5555555431 11 455666666666666544444 35667777777777777774 44 667778888
Q ss_pred eeccCCCCCCc
Q 019584 252 LGLCGGPLSKK 262 (338)
Q Consensus 252 L~l~~N~l~~~ 262 (338)
|++++|.+++.
T Consensus 196 L~l~~N~l~~~ 206 (457)
T 3bz5_A 196 LNCDTNNITKL 206 (457)
T ss_dssp EECCSSCCSCC
T ss_pred EECcCCcCCee
Confidence 88888877764
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=9.5e-15 Score=139.99 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
..++++|++++|.+++. .+.++++|++|++++|.+++ +| +..+++|++|++++|.+++ ++ ++.+++|+
T Consensus 84 l~~L~~L~Ls~N~l~~~-----~~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~ 151 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNL-----DVTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLT 151 (457)
T ss_dssp CTTCSEEECCSSCCSCC-----CCTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCC
T ss_pred CCCCCEEECcCCCCcee-----ecCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccce-ec--cccCCcCC
Confidence 45788888888887753 26677778888888887764 33 6677777777777777764 32 44455555
Q ss_pred EEEccCC----------------------CCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCee
Q 019584 171 VLDLSYS----------------------NFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFS 228 (338)
Q Consensus 171 ~L~Ls~N----------------------~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 228 (338)
+|++++| +++ .+| +..+++|++|++++|.+++. .++.+++|++|
T Consensus 152 ~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~---------~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L 217 (457)
T 3bz5_A 152 ELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT---------ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL 217 (457)
T ss_dssp EEECTTCSCCCCCCCTTCTTCCEEECCSSCCC---------CCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred EEECCCCCcccccccccCCcCCEEECCCCccc---------eec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence 5555555 432 122 45566666666666666653 25666777777
Q ss_pred ecccccCcccCchhccCCCCCCeeeccCCCCCCcC
Q 019584 229 SLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 229 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
++++|++++ +| +..+++|+.|++++|.+++..
T Consensus 218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 777777775 45 666777777777777777643
No 120
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3e-15 Score=124.18 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=67.1
Q ss_pred ccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCC
Q 019584 120 LQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLT 199 (338)
Q Consensus 120 L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~ 199 (338)
.+.+++++|.++. +|..+ .++|++|+|++|.+++..|..|..+++|++|+|++|+++ ...+..+..++
T Consensus 11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--------~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT--------VLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--------CCCTTTTTTCT
T ss_pred CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC--------ccChhhccCCC
Confidence 4567777777753 55444 366777777777777555666677777777777777654 22334456666
Q ss_pred CCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcc
Q 019584 200 NLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 200 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
+|++|++++|++++..+..+..+++|++|+|++|.++.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66666666666665544556666666666666666653
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1e-17 Score=142.42 Aligned_cols=152 Identities=28% Similarity=0.341 Sum_probs=117.5
Q ss_pred cEEEEEeCCCCceeecCCCC----ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCC
Q 019584 93 HVVELDLASSCLYGSINSTS----SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSN 168 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 168 (338)
.++.++++++.+.+..+... .+..+++|++|++++|.++. +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 45556666666665544211 56778899999999999875 66 7888999999999999998 78887777889
Q ss_pred CCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-hhcccCCCCCeeecccccCcccCchh-----
Q 019584 169 LEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP-HTLANLSSLRFSSLSGCRLQGEFPQE----- 242 (338)
Q Consensus 169 L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----- 242 (338)
|++|++++|+++ .+| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 95 L~~L~L~~N~l~---------~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 95 LEELWISYNQIA---------SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp CSEEEEEEEECC---------CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred CCEEECcCCcCC---------cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 999999999864 344 57788899999999999986322 47888999999999999998765542
Q ss_pred -----ccCCCCCCeeeccCCCCC
Q 019584 243 -----IFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 243 -----l~~l~~L~~L~l~~N~l~ 260 (338)
+..+++|+.|| +|+++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 67788999886 56554
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=9.8e-15 Score=121.55 Aligned_cols=104 Identities=21% Similarity=0.225 Sum_probs=62.2
Q ss_pred cEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCC
Q 019584 121 QRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTN 200 (338)
Q Consensus 121 ~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~ 200 (338)
+.+++++|.++. +|..+. ++|++|+|++|++++..|..+..+++|++|+|++|+++ ...+..+..+++
T Consensus 15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--------~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT--------AIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------CCCTTTTTTCTT
T ss_pred cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC--------ccChhHhCCcch
Confidence 456777777642 555442 66777777777776555666666667777777776653 222233455666
Q ss_pred CCEEEccCCCCCCCCchhcccCCCCCeeecccccCc
Q 019584 201 LKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 201 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
|++|++++|++++..+..+..+++|++|+|++|.+.
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666666666666544444555666666666666655
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6e-15 Score=122.87 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=108.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCc-CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLV-HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLE 170 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (338)
.+++.|++++|.++. ++ .+..+. +|++|++++|.++. + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~---~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IE---NLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp TSCEEEECTTSCCCS-CC---CGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCceEEEeeCCCCch-hH---HhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 589999999999984 33 455555 99999999999974 4 5688999999999999999954334458999999
Q ss_pred EEEccCCCCCcccccccCCCcch--hhcCCCCCCEEEccCCCCCCCCchh----cccCCCCCeeecccccCcc
Q 019584 171 VLDLSYSNFDTFYLKLQKPGLAN--LAENLTNLKALDLINVHISSTVPHT----LANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 171 ~L~Ls~N~l~~~~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~ 237 (338)
+|++++|+++ .+|. .+..+++|++|++++|.++. +|.. +..+++|++||+++|....
T Consensus 92 ~L~L~~N~i~---------~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV---------ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC---------CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC---------cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999974 4454 78899999999999999985 5664 8899999999999998763
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.7e-14 Score=141.63 Aligned_cols=122 Identities=24% Similarity=0.283 Sum_probs=108.0
Q ss_pred CccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584 119 HLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198 (338)
Q Consensus 119 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l 198 (338)
.|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+| .+..+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~---------~lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---------NVD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC---------CCG-GGTTC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC---------CCc-ccCCC
Confidence 57899999999985 676 999999999999999999 89999999999999999999965 356 78999
Q ss_pred CCCCEEEccCCCCCCCC-chhcccCCCCCeeecccccCcccCch---hccCCCCCCeeec
Q 019584 199 TNLKALDLINVHISSTV-PHTLANLSSLRFSSLSGCRLQGEFPQ---EIFQLPNLQFLGL 254 (338)
Q Consensus 199 ~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 254 (338)
++|++|++++|.+++.. |..++.+++|+.|+|++|.+++..|. .+..+++|+.|++
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999876 99999999999999999999976543 2334889999864
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.55 E-value=3.2e-16 Score=149.75 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred cchhhcCCCCCCEEEccCCCCCCCCchhccc-----CCCCCeeecccccCcc----cCchhccCCCCCCeeeccCCCCCC
Q 019584 191 LANLAENLTNLKALDLINVHISSTVPHTLAN-----LSSLRFSSLSGCRLQG----EFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 191 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 3444555666666666666665443333332 4566666666666664 455566666666666666666664
No 126
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=7.4e-15 Score=145.56 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCcccceeEE------cCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh
Q 019584 67 VATWKPDEKNKDCCSWDGVKC------NEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL 140 (338)
Q Consensus 67 ~~~w~~~~~~~~~c~w~gv~c------~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~ 140 (338)
...|. ...++|.|++..| .....+++.|++++|+++ .+|. .+. ++|+.|++++|.++. +|.
T Consensus 12 w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~--- 78 (622)
T 3g06_A 12 WSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA--- 78 (622)
T ss_dssp HHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---
T ss_pred HHHHH---hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---
Confidence 34575 4566788865321 111124677777777776 4444 333 567777777776652 444
Q ss_pred cCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCC
Q 019584 141 NFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFD 180 (338)
Q Consensus 141 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 180 (338)
.+++|++|+|++|.++ .+|. .+++|++|++++|+++
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 4566777777777666 4554 4566666666666654
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=2.6e-14 Score=141.65 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=77.9
Q ss_pred CCCcEEEcccccCccccchhhc-----------------CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEE
Q 019584 143 SRLTHLNLSQSYFSGQIPAELL-----------------ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALD 205 (338)
Q Consensus 143 ~~L~~L~Ls~n~l~~~~p~~l~-----------------~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~ 205 (338)
++|++|++++|.+++ +|..+. .+++|++|++++|+++ .+| ..+++|++|+
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~---------~lp---~~l~~L~~L~ 247 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT---------SLP---VLPSELKELM 247 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS---------CCC---CCCTTCCEEE
T ss_pred CCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC---------cCC---CCCCcCcEEE
Confidence 667777777777763 443221 1245666666666543 233 4568899999
Q ss_pred ccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 206 LINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 206 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+++|.++. +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|.
T Consensus 248 Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 248 VSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99999884 565 5688999999999999 8899999999999999999999987664
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=5.2e-17 Score=138.09 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=114.9
Q ss_pred cccCcCccEEEccCCCCCCC-----CCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccC
Q 019584 114 LFQLVHLQRLSLFDNNFNFS-----EIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQK 188 (338)
Q Consensus 114 l~~l~~L~~L~L~~n~l~~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~ 188 (338)
+.....++.++++.+.+++. .+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-------- 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-------- 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--------
Confidence 33455666666666666554 133489999999999999999995 77 8899999999999999964
Q ss_pred CCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc-hhccCCCCCCeeeccCCCCCCcCCC
Q 019584 189 PGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP-QEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 189 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
.+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.
T Consensus 84 -~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 84 -KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 467777788999999999999987 55 68889999999999999995322 4788999999999999999988775
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=7.8e-14 Score=133.51 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=44.1
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
++++|++++|.+++ +| .+.++++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .+..+++|++|
T Consensus 132 ~L~~L~L~~n~l~~-lp---~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP---ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAI 200 (454)
T ss_dssp TCCEEECCSSCCSS-CC---CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCCEEECcCCCCCC-Cc---ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEE
Confidence 55555555555553 22 35566666666666666653 3332 2356666666666663 44 46666666666
Q ss_pred EccCCCCC
Q 019584 173 DLSYSNFD 180 (338)
Q Consensus 173 ~Ls~N~l~ 180 (338)
++++|+++
T Consensus 201 ~l~~N~l~ 208 (454)
T 1jl5_A 201 YADNNSLK 208 (454)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCC
Confidence 66666654
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.51 E-value=1.1e-13 Score=132.50 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=85.3
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCE
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEV 171 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (338)
.+++.|++++|.+++. +. + .++|++|++++|.+++ +| .+.++++|++|++++|++++ +|..+ .+|++
T Consensus 111 ~~L~~L~l~~n~l~~l-~~---~--~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~ 177 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKAL-SD---L--PPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEF 177 (454)
T ss_dssp TTCCEEECCSSCCSCC-CS---C--CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCE
T ss_pred CCCcEEECCCCccCcc-cC---C--CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccE
Confidence 3455555555555431 11 0 1567777777777763 55 47777777777777777773 55432 47777
Q ss_pred EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCe
Q 019584 172 LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQF 251 (338)
Q Consensus 172 L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 251 (338)
|++++|++++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. +..+++|++
T Consensus 178 L~L~~n~l~~---------l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 178 IAAGNNQLEE---------LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTT 241 (454)
T ss_dssp EECCSSCCSS---------CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred EECcCCcCCc---------Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCE
Confidence 7777777542 34 36677777777777777765 3322 135666666666665 4553 556666666
Q ss_pred eeccCCCCCC
Q 019584 252 LGLCGGPLSK 261 (338)
Q Consensus 252 L~l~~N~l~~ 261 (338)
|++++|.+++
T Consensus 242 L~l~~N~l~~ 251 (454)
T 1jl5_A 242 IYADNNLLKT 251 (454)
T ss_dssp EECCSSCCSS
T ss_pred EECCCCcCCc
Confidence 6666666654
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=2.2e-15 Score=143.95 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=95.7
Q ss_pred CcEEEEEeCCCCceee----cCCCCccccCcCccEEEccCCCCCCCCCchhhhcCC----CCcEEEcccccCcc----cc
Q 019584 92 GHVVELDLASSCLYGS----INSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFS----RLTHLNLSQSYFSG----QI 159 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~----~L~~L~Ls~n~l~~----~~ 159 (338)
++++.|++++|.+++. ++. .+..+++|++|++++|.++..........++ +|++|++++|.++. .+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3566666666666532 223 4455667777777777664321112223344 57777777777663 34
Q ss_pred chhhcCCCCCCEEEccCCCCCcccccccCCCcchh-hcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeeccccc
Q 019584 160 PAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL-AENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCR 234 (338)
Q Consensus 160 p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~-~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~ 234 (338)
+..+..+++|++|++++|.+++.... .+... ....++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~----~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQ----LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHH----HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHccCCceeEEECCCCcCchHHHH----HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 66666677777777777765321100 11111 22345677777777777653 24555666778888888887
Q ss_pred CcccCchhcc-----CCCCCCeeeccCCCCCC
Q 019584 235 LQGEFPQEIF-----QLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 235 l~~~~p~~l~-----~l~~L~~L~l~~N~l~~ 261 (338)
+++..+..+. ..++|++|++++|.++.
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 7754444333 25578888888887776
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=8.9e-16 Score=143.21 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=124.4
Q ss_pred CcEEEEEeCCCCceeecCCCCcccc-----CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhh---
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQ-----LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL--- 163 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l--- 163 (338)
.+++.|+|++|.++..... .+.. .++|+.|+|++|.++..........+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 5789999999998754322 2322 37999999999998643222233456789999999999985544443
Q ss_pred --cCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCcc
Q 019584 164 --LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 164 --~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
...++|++|+|++|.+++... ..++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.+++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGV----AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHH----HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCccceeeCCCCCCChHHH----HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 356899999999999754211 13556678899999999999999753 35667788899999999999986
Q ss_pred c----CchhccCCCCCCeeeccCCCCCCcC
Q 019584 238 E----FPQEIFQLPNLQFLGLCGGPLSKKC 263 (338)
Q Consensus 238 ~----~p~~l~~l~~L~~L~l~~N~l~~~~ 263 (338)
. ++..+...++|++|++++|.++...
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3 4445566789999999999988643
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.2e-13 Score=114.42 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=77.6
Q ss_pred EEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEcc
Q 019584 96 ELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLS 175 (338)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 175 (338)
.+++++|.++. +|. .+ .++|++|+|++|.++.. .|..+.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 13 ~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 13 TVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp EEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 56777777764 443 33 37788888888888764 57778888888888888888885555556788888888888
Q ss_pred CCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 176 YSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 176 ~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
+|+++ ...+..+..+++|++|++++|.+...
T Consensus 87 ~N~l~--------~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLK--------SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCC--------CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccC--------EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88864 23344577888888888888888754
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.7e-13 Score=112.80 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=82.2
Q ss_pred EEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEc
Q 019584 95 VELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDL 174 (338)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 174 (338)
+.+++++|+++ .+|. .+. ++|++|+|++|.+++. .|..+.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus 15 ~~l~~~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 46888888885 4444 443 7889999999998864 6778888999999999999998544445688899999999
Q ss_pred cCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 175 SYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 175 s~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
++|+++ ...+..+..+++|++|++++|.+...
T Consensus 89 ~~N~l~--------~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 89 NDNHLK--------SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CSSCCC--------CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCccc--------eeCHHHhccccCCCEEEeCCCCcccc
Confidence 999865 23334578889999999999988753
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.43 E-value=3.4e-13 Score=124.22 Aligned_cols=134 Identities=17% Similarity=0.095 Sum_probs=101.9
Q ss_pred cEEEccCC-CCCCCCCchhhhcCCCCcEEEccc-ccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCC
Q 019584 121 QRLSLFDN-NFNFSEIPSAILNFSRLTHLNLSQ-SYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENL 198 (338)
Q Consensus 121 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l 198 (338)
..++.+++ .++. +|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|+ +..|..|.++
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--------~~~~~~~~~l 79 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--------FVAPDAFHFT 79 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--------EECTTGGGSC
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--------eeCHHHhcCC
Confidence 35688888 8873 888 99999999999996 9999766678999999999999999965 4556788999
Q ss_pred CCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCc-hhccCCCCCCeeeccCCCCCCcCCCC
Q 019584 199 TNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFP-QEIFQLPNLQFLGLCGGPLSKKCNNS 266 (338)
Q Consensus 199 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~~ 266 (338)
++|++|+|++|+|++..+..+..++ |+.|+|.+|.+...-. ..+..+.......+..+.++|..|..
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~ 147 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP 147 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSC
T ss_pred cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChH
Confidence 9999999999999976555565555 9999999999884321 12222222233445667788877763
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.1e-12 Score=120.66 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=87.2
Q ss_pred cccceeEEcCCCCcEEEEEeCCC-CceeecCCCCccccCcCccEEEccC-CCCCCCCCchhhhcCCCCcEEEcccccCcc
Q 019584 80 CSWDGVKCNEDTGHVVELDLASS-CLYGSINSTSSLFQLVHLQRLSLFD-NNFNFSEIPSAILNFSRLTHLNLSQSYFSG 157 (338)
Q Consensus 80 c~w~gv~c~~~~~~l~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~ 157 (338)
|.|..+.|. ++ +++. +|. +..+++|+.|+|++ |.++.. .+..|.++++|++|+|++|+|++
T Consensus 8 C~~~~v~~~------------~~n~l~~-ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~ 70 (347)
T 2ifg_A 8 HGSSGLRCT------------RDGALDS-LHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRF 70 (347)
T ss_dssp SSSSCEECC------------SSCCCTT-TTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCE
T ss_pred ccCCEEEcC------------CCCCCCc-cCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccce
Confidence 777666663 34 5553 333 77889999999996 999864 56789999999999999999998
Q ss_pred ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 158 QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 158 ~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
..|..|..+++|++|+|++|+|+. ..+..+..++ |++|++.+|.+...
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALES--------LSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSC--------CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eCHHHhcCCcCCCEEeCCCCccce--------eCHHHcccCC-ceEEEeeCCCccCC
Confidence 888899999999999999999752 3334455555 99999999999853
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.34 E-value=3.3e-12 Score=117.94 Aligned_cols=160 Identities=21% Similarity=0.129 Sum_probs=114.0
Q ss_pred eEEcCCCCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCc-hhhhcCCCCcEEEcccccCccccch-h
Q 019584 85 VKCNEDTGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIP-SAILNFSRLTHLNLSQSYFSGQIPA-E 162 (338)
Q Consensus 85 v~c~~~~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~-~ 162 (338)
-.|.. +.++-++++++ .+|. .+ .+++++|+|++|+++. +| ..|.++++|++|+|++|++.+.+|. .
T Consensus 7 C~C~~-----~~v~C~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 7 CHCSN-----RVFLCQESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp SEEET-----TEEEEESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred cEeeC-----CEEEecCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 46753 25788899888 4555 44 3689999999999974 55 5689999999999999999767765 5
Q ss_pred hcCCCCCCE-EEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhccc--------------------
Q 019584 163 LLELSNLEV-LDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLAN-------------------- 221 (338)
Q Consensus 163 l~~l~~L~~-L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-------------------- 221 (338)
|.++++|++ +.+..|+++ ...|..+..+++|++|++++|.+....+..+..
T Consensus 75 f~~L~~l~~~l~~~~N~l~--------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLL--------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp BCSCTTCCEEEEEEETTCC--------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred hhcchhhhhhhcccCCccc--------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 788888775 666778865 234667889999999999999987543322211
Q ss_pred -----C-CCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCC
Q 019584 222 -----L-SSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNN 265 (338)
Q Consensus 222 -----l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 265 (338)
+ ..++.|++++|+++ .+|.......+|+++++.+|...+.+|+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred cchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCH
Confidence 2 24666777777777 4555555556777777766544445554
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3.2e-13 Score=125.92 Aligned_cols=148 Identities=20% Similarity=0.133 Sum_probs=111.7
Q ss_pred CcEEEEEeCCCCceeecCCCCcc-ccCcCccEEEccCCCCCCCCCchhh-----hcCCCCcEEEcccccCccc----cch
Q 019584 92 GHVVELDLASSCLYGSINSTSSL-FQLVHLQRLSLFDNNFNFSEIPSAI-----LNFSRLTHLNLSQSYFSGQ----IPA 161 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~ 161 (338)
.++++|+|++|.+++.... .+ ..+++|+.|+|++|.++.. ....+ ...++|++|+|++|.++.. ++.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~--~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLR--TLLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHH--HTHHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHH--HHHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 5899999999999754322 23 3467899999999998643 22333 2468999999999999742 455
Q ss_pred hhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccccCcc
Q 019584 162 ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGCRLQG 237 (338)
Q Consensus 162 ~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 237 (338)
.+..+++|++|+|++|.+++.... .+...+...++|++|++++|.+++. ++..+...++|++|+|++|.+++
T Consensus 178 ~L~~~~~L~~L~Ls~N~l~~~g~~----~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTGLGDEGLE----LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHTCSSCCEEECTTSSCHHHHHH----HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHhcCCCcCEEeCCCCCCCcHHHH----HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 567889999999999997642111 3456677889999999999999863 34555677999999999999997
Q ss_pred cCchhccCC
Q 019584 238 EFPQEIFQL 246 (338)
Q Consensus 238 ~~p~~l~~l 246 (338)
.....+..+
T Consensus 254 ~g~~~L~~~ 262 (372)
T 3un9_A 254 EGRQVLRDL 262 (372)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 655555443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=4.6e-11 Score=109.23 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCCCce--e-----------------ecCCCCcccc--------CcCccEEEccCCCCCCCCCchhhhcCC
Q 019584 91 TGHVVELDLASSCLY--G-----------------SINSTSSLFQ--------LVHLQRLSLFDNNFNFSEIPSAILNFS 143 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~--~-----------------~~~~~~~l~~--------l~~L~~L~L~~n~l~~~~~p~~l~~l~ 143 (338)
.++++.|||++|.+. . .++ ...|.+ +++|+.|+|.+ .++.. -+..|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~-~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP-AYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC-TTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccC-HHHhcccccccccccCCCcEEECCc-cccch-hHHHhhcCc
Confidence 357888888888876 1 111 124556 78888888877 66532 345677888
Q ss_pred CCcEEEcccccCc
Q 019584 144 RLTHLNLSQSYFS 156 (338)
Q Consensus 144 ~L~~L~Ls~n~l~ 156 (338)
+|+.|++++|.+.
T Consensus 125 ~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 125 NLKICQIRKKTAP 137 (329)
T ss_dssp TCCEEEBCCSSCC
T ss_pred ccceEEcCCCCcc
Confidence 8888888887764
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.20 E-value=1.7e-12 Score=127.81 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=64.6
Q ss_pred CcEEEEEeCCCCceeecCCCCcccc-Cc-CccEEEccCCC-CCCCCCchhhhcCCCCcEEEcccccCccc----cchhhc
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQ-LV-HLQRLSLFDNN-FNFSEIPSAILNFSRLTHLNLSQSYFSGQ----IPAELL 164 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~-l~-~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~ 164 (338)
+++++|+|++|.+++.... .+.. ++ +|++|++++|. ++...++.....+++|++|+|++|.+++. ++....
T Consensus 112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4677777777776654333 3333 22 36666666654 21111222334566666666666665543 223334
Q ss_pred CCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584 165 ELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230 (338)
Q Consensus 165 ~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 230 (338)
.+++|++|++++|.+++... ..++..+.++++|++|++++|.+.+ +|..+..+++|++|++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~----~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISP----KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCH----HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred cCCCccEEEeeccCCCccCH----HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence 55666666666666432100 1233444455555555555555443 3333333333333333
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.18 E-value=1.9e-12 Score=127.42 Aligned_cols=170 Identities=17% Similarity=0.168 Sum_probs=93.7
Q ss_pred CcEEEEEeCCCCceeecCCCCccc------------------------cCcCccEEEccC-----------CCCCCCCCc
Q 019584 92 GHVVELDLASSCLYGSINSTSSLF------------------------QLVHLQRLSLFD-----------NNFNFSEIP 136 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~------------------------~l~~L~~L~L~~-----------n~l~~~~~p 136 (338)
+++++|++++|.+++.... ..+. .+++|++|++++ |.++...++
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHC-TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGCCEEEETTCCCCHHHHH-HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred CCCcEEecCCCcCCHHHHH-HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 4788888888876533211 0122 245566666662 333322122
Q ss_pred hhhhcCCCCcEEEcccccCccccchhhcC-CCCCCEEEcc----CCCCCccccc-----------------cc--CC---
Q 019584 137 SAILNFSRLTHLNLSQSYFSGQIPAELLE-LSNLEVLDLS----YSNFDTFYLK-----------------LQ--KP--- 189 (338)
Q Consensus 137 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~l~-----------------~~--~~--- 189 (338)
.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++.+.. +. .+
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 23345667777777666666555555544 6677777775 4454431000 00 00
Q ss_pred --CcchhhcCCCCCCEEEccCCCCCCC-CchhcccCCCCCeeecccccCccc-CchhccCCCCCCeeeccCCCCCCc
Q 019584 190 --GLANLAENLTNLKALDLINVHISST-VPHTLANLSSLRFSSLSGCRLQGE-FPQEIFQLPNLQFLGLCGGPLSKK 262 (338)
Q Consensus 190 --~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 262 (338)
.+......+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 0111122366677777777776642 344456677777788877777654 333345677788888888777654
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.06 E-value=2.5e-11 Score=119.35 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=71.6
Q ss_pred CcEEEEEeCCCCceeecCCCCccc-cCcCccEEEccCC-CCCCCCCchhhhcCCCCcEEEcccccCccccchhh----cC
Q 019584 92 GHVVELDLASSCLYGSINSTSSLF-QLVHLQRLSLFDN-NFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAEL----LE 165 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~ 165 (338)
+++++|+|++|.+++.... .+. .+++|+.|++++| .++...++....++++|++|++++|.+++..+..+ ..
T Consensus 105 ~~L~~L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 5788899998888765544 454 5788888998888 44432244455578888899988888775444433 35
Q ss_pred CCCCCEEEccCCC--CCcccccccCCCcchhhcCCCCCCEEEccCC
Q 019584 166 LSNLEVLDLSYSN--FDTFYLKLQKPGLANLAENLTNLKALDLINV 209 (338)
Q Consensus 166 l~~L~~L~Ls~N~--l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N 209 (338)
+++|++|++++|. ++. ..++.....+++|++|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~-------~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSF-------SALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCH-------HHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCH-------HHHHHHHHhCCCCcEEecCCC
Confidence 6688888888875 211 122233344566666666665
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=6.7e-10 Score=101.42 Aligned_cols=164 Identities=14% Similarity=0.093 Sum_probs=105.0
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccC-------c--------
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYF-------S-------- 156 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l-------~-------- 156 (338)
.+++.|+|.+ .++..... .|.++++|+.+++++|.+... .+..|.++.++.++.+..+.. .
T Consensus 101 ~~L~~l~L~~-~i~~I~~~--aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDA--AFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp TTCCC-CBCT-TCCEECTT--TTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred CCCcEEECCc-cccchhHH--HhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 5788999988 77765555 788999999999999987532 344555555555555443111 0
Q ss_pred -----------cccchh---------------------------h-cCCCCCCEEEccCCCCCcccccccCCCcchhhcC
Q 019584 157 -----------GQIPAE---------------------------L-LELSNLEVLDLSYSNFDTFYLKLQKPGLANLAEN 197 (338)
Q Consensus 157 -----------~~~p~~---------------------------l-~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~ 197 (338)
+.++.. + ..+++|+.+++++|+++. .....|.+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~--------I~~~aF~~ 248 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT--------IPDFTFAQ 248 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE--------ECTTTTTT
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce--------ecHhhhhC
Confidence 000000 0 025778888888777542 22345777
Q ss_pred CCCCCEEEccCCCCCCCCchhcccCCCCC-eeecccccCcccCchhccCCCCCCeeeccCCCCCCcCCCCCCC
Q 019584 198 LTNLKALDLINVHISSTVPHTLANLSSLR-FSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCNNSEAS 269 (338)
Q Consensus 198 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 269 (338)
+++|+++++.+| +....+..|.++.+|+ .+++.+ .++...+.+|..+++|+.+++++|.++.--+..+..
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGN 319 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCT
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcC
Confidence 788888888777 6655566677778887 888877 666444567777788888888777776654444433
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=2e-11 Score=120.02 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCCcEEEcccccCccccchhhc-CCCCCCEEEcc--C----CCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC
Q 019584 142 FSRLTHLNLSQSYFSGQIPAELL-ELSNLEVLDLS--Y----SNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST 214 (338)
Q Consensus 142 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 214 (338)
+++|++|+++.|.+++..+..+. .+++|+.|+++ + |.+++.... ..++..+..+++|++|++++ .+++.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~---~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD---IGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH---HHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh---hHHHHHHhhCCCccEEeecC-cccHH
Confidence 55555555555555544333443 36677777776 3 333311111 12223344556666666654 44443
Q ss_pred Cchhccc-CCCCCeeecccccCcccCchhc-cCCCCCCeeeccCCCCC
Q 019584 215 VPHTLAN-LSSLRFSSLSGCRLQGEFPQEI-FQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 215 ~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~ 260 (338)
.+..++. +++|++|+|++|.+++..+..+ ..+++|++|++++|+++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 3344443 5666666666666654444333 44566666666666653
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.92 E-value=1.3e-11 Score=109.28 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=65.9
Q ss_pred EEcccccCccccch----hhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCC
Q 019584 148 LNLSQSYFSGQIPA----ELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLS 223 (338)
Q Consensus 148 L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 223 (338)
++++.|... .++. ...++++|++|+|++|+++++ ..++..+..+++|+.|+|++|++++. ..+..+.
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 456666433 2222 224578888888888887631 14556677888888888888888864 3344444
Q ss_pred --CCCeeecccccCcccCch-------hccCCCCCCeee
Q 019584 224 --SLRFSSLSGCRLQGEFPQ-------EIFQLPNLQFLG 253 (338)
Q Consensus 224 --~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~ 253 (338)
+|++|+|++|.+++.+|. .+..+++|+.||
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 888889999888876652 356788888876
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=5.1e-10 Score=103.64 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=101.7
Q ss_pred CcEEEEEeCCCCce---------eecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchh
Q 019584 92 GHVVELDLASSCLY---------GSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAE 162 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~---------~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (338)
++++.|.+.+.... +.+.. .+..+++|+.|++++|.- ..++. + .+++|++|+|..|.+.......
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~--ll~~~P~L~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHH--HHHTCTTCCEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHH--HHhcCCCCcEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 47888888654321 11112 345678899999988731 11333 3 3788999999888876544444
Q ss_pred hc--CCCCCCEEEccCC--CCC-cccccccCCCcchhh--cCCCCCCEEEccCCCCCCCCchhcc---cCCCCCeeeccc
Q 019584 163 LL--ELSNLEVLDLSYS--NFD-TFYLKLQKPGLANLA--ENLTNLKALDLINVHISSTVPHTLA---NLSSLRFSSLSG 232 (338)
Q Consensus 163 l~--~l~~L~~L~Ls~N--~l~-~~~l~~~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~ 232 (338)
+. .+++|++|+|+.+ ... ...+ ..+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~----~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDM----NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCG----GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHccCCCCcEEEEeccccccccchhH----HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 43 6889999988632 111 0000 0111222 2478999999999888754444443 467899999999
Q ss_pred ccCcccC----chhccCCCCCCeeeccCCCCCC
Q 019584 233 CRLQGEF----PQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 233 N~l~~~~----p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
|.+++.. +..+..+++|+.|++++|.++.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 9988643 3344456889999999888764
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=6.2e-10 Score=93.22 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=29.3
Q ss_pred ccCcCccEEEccCC-CCCCC---CCchhhhcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCC
Q 019584 115 FQLVHLQRLSLFDN-NFNFS---EIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFD 180 (338)
Q Consensus 115 ~~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 180 (338)
...+.|+.|+|++| .+... .+...+...++|++|+|++|.+... +...+...++|++|+|++|.++
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455555555555 44321 0122333444555555555555422 2222333344555555555543
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=4e-10 Score=94.39 Aligned_cols=120 Identities=15% Similarity=0.071 Sum_probs=79.4
Q ss_pred hhhhcCCCCcEEEcccc-cCccc----cchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCC
Q 019584 137 SAILNFSRLTHLNLSQS-YFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHI 211 (338)
Q Consensus 137 ~~l~~l~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 211 (338)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.+.... .+...+...++|++|+|++|.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~----~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF----ALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH----HHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH----HHHHHHHhCCCcCEEECcCCcC
Confidence 44556778888888887 77632 344455667888888888876532111 2345556667788888888887
Q ss_pred CCC----CchhcccCCCCCeeec--ccccCccc----CchhccCCCCCCeeeccCCCCC
Q 019584 212 SST----VPHTLANLSSLRFSSL--SGCRLQGE----FPQEIFQLPNLQFLGLCGGPLS 260 (338)
Q Consensus 212 ~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 260 (338)
++. +...+...++|++|+| ++|.++.. +.+.+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 653 3455666677888888 77887754 3344555677888888887764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=1.5e-08 Score=93.79 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=103.6
Q ss_pred CCcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhh--cCCCCcEEEccc--ccCccc-----cch
Q 019584 91 TGHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAIL--NFSRLTHLNLSQ--SYFSGQ-----IPA 161 (338)
Q Consensus 91 ~~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~p~ 161 (338)
.++++.|+|+++.-. .++ .+ .+++|+.|+|..+.++.. ....+. .+++|++|+|+. |...+. +..
T Consensus 171 ~P~L~~L~L~g~~~l-~l~---~~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIG---KK-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTC-BCC---SC-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCc-eec---cc-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 468999999987311 122 23 388999999999887543 233444 789999999863 222111 112
Q ss_pred hh--cCCCCCCEEEccCCCCCcccccccCCCcchhh---cCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeeccc
Q 019584 162 EL--LELSNLEVLDLSYSNFDTFYLKLQKPGLANLA---ENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSG 232 (338)
Q Consensus 162 ~l--~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~ 232 (338)
.+ ..+++|++|+|.+|.+.+ ..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~--------~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQN--------VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHH--------HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHhcCCCCCcCEEeCCCCCCch--------HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 22 247899999999998642 112222 3578999999999999864 344456679999999999
Q ss_pred ccCcccCchhccC-CCCCCeeeccCCC
Q 019584 233 CRLQGEFPQEIFQ-LPNLQFLGLCGGP 258 (338)
Q Consensus 233 N~l~~~~p~~l~~-l~~L~~L~l~~N~ 258 (338)
|.++...-..+.. + ...+++++|+
T Consensus 317 n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 9998655554543 3 3567888876
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.53 E-value=2.1e-08 Score=88.54 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=65.0
Q ss_pred hcCCCCcEEEcccccCcc--ccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCc-
Q 019584 140 LNFSRLTHLNLSQSYFSG--QIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVP- 216 (338)
Q Consensus 140 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p- 216 (338)
.++++|++|+|++|.+++ .+|..+..+++|+.|+|++|++++. . . ...+..+ +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~----~-l~~l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--R----E-LDKIKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--G----G-GGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--h----h-hhhcccC-CcceEEccCCcCccccCc
Confidence 568999999999999997 5567778999999999999998642 0 1 1223344 99999999999987665
Q ss_pred ------hhcccCCCCCeee
Q 019584 217 ------HTLANLSSLRFSS 229 (338)
Q Consensus 217 ------~~l~~l~~L~~L~ 229 (338)
..+..+++|+.||
T Consensus 239 ~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 239 QSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHHHCTTCCEES
T ss_pred chhHHHHHHHHCcccCeEC
Confidence 2467889999887
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.52 E-value=8.3e-07 Score=83.22 Aligned_cols=159 Identities=10% Similarity=0.015 Sum_probs=83.2
Q ss_pred CcEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccc------------------
Q 019584 92 GHVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQS------------------ 153 (338)
Q Consensus 92 ~~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n------------------ 153 (338)
.+++.+++++|.++..... .|. ..+|+.+.+.++ ++.. -...|.++++|+.+++.++
T Consensus 180 ~~L~~l~l~~n~l~~I~~~--aF~-~~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPAS--TFV-YAGIEEVLLPVT-LKEI-GSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSEECTT--TTT-TCCCSEEECCTT-CCEE-CTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCCcceEechh--hEe-ecccCEEEeCCc-hhee-hhhHhhCCCCCCEEecCCCccCccccccccCCccEEE
Confidence 4688888888777644333 333 456666666543 3221 2344555556666665543
Q ss_pred ---cCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeec
Q 019584 154 ---YFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSL 230 (338)
Q Consensus 154 ---~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 230 (338)
.++..-...|.++++|+.+++.+|.+...... ..-+..|.++++|+.+++.+ .++......|.++.+|+.++|
T Consensus 255 lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~---~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 255 LPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEA---MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTC---EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred eCCCccEEChhHhhCCCCCCEEEeCCccccCCccc---EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 22212233455556666666655543200000 01123455666666666663 354444455666666666666
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCCCCC
Q 019584 231 SGCRLQGEFPQEIFQLPNLQFLGLCGGPLSK 261 (338)
Q Consensus 231 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 261 (338)
..| ++..-..+|..+ +|+.+++.+|.+..
T Consensus 331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 444 443334455566 67777777665443
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=1.6e-06 Score=81.20 Aligned_cols=157 Identities=11% Similarity=0.099 Sum_probs=100.8
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
+++.+++.+ .+...... .|.++.+|+.+++.+|.++. ++...-...+|+.+.+.++ ++..-...|.++++|+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~--aF~~c~~L~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKED--IFYYCYNLKKADLSKTKITK--LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCCEEECCT-TCCEECSS--TTTTCTTCCEEECTTSCCSE--ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred CceEEEeCC-CccEehHH--HhhCcccCCeeecCCCcceE--echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence 466677765 45444444 77888888888888888764 3333333678888888754 653445577888888888
Q ss_pred EccCCCCCcc-------------cccccCCCc-chhhcCCCCCCEEEccCCCCC-----CCCchhcccCCCCCeeecccc
Q 019584 173 DLSYSNFDTF-------------YLKLQKPGL-ANLAENLTNLKALDLINVHIS-----STVPHTLANLSSLRFSSLSGC 233 (338)
Q Consensus 173 ~Ls~N~l~~~-------------~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~Ls~N 233 (338)
++..| ++.. .+.-.-..+ ...|.++++|+.+++.+|.+. ...+..|..+++|+.++|.+
T Consensus 232 ~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 232 EIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp ECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred ecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 88764 2211 000000011 345677788888888877664 23456677788888888874
Q ss_pred cCcccCchhccCCCCCCeeeccCC
Q 019584 234 RLQGEFPQEIFQLPNLQFLGLCGG 257 (338)
Q Consensus 234 ~l~~~~p~~l~~l~~L~~L~l~~N 257 (338)
.++......|..+++|+.+++..|
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT
T ss_pred ceEEEhhhhhcCCCCccEEEECcc
Confidence 466444556777888888888654
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2e-06 Score=70.78 Aligned_cols=87 Identities=11% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCCCcEEEcccccCccccchhhcCCCCCCEEEccCCC-CCcccccccCCCcchhhcCC----CCCCEEEccCCC-CCCCC
Q 019584 142 FSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSN-FDTFYLKLQKPGLANLAENL----TNLKALDLINVH-ISSTV 215 (338)
Q Consensus 142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~l~~~~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~ 215 (338)
-.+|++||++++.++..--..+..+++|++|+|+++. +++.. -..+..+ ++|++|++++|. +++.-
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--------LERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--------HHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--------HHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 3479999999999886655667889999999999985 44311 1233443 478999999875 77655
Q ss_pred chhcccCCCCCeeeccccc-Cc
Q 019584 216 PHTLANLSSLRFSSLSGCR-LQ 236 (338)
Q Consensus 216 p~~l~~l~~L~~L~Ls~N~-l~ 236 (338)
-..+..+++|++|+++++. ++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 5667788899999998875 54
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.6e-06 Score=70.08 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=65.6
Q ss_pred CcCccEEEccCCCCCCCCCchhhhcCCCCcEEEccccc-CccccchhhcCC----CCCCEEEccCCC-CCcccccccCCC
Q 019584 117 LVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSY-FSGQIPAELLEL----SNLEVLDLSYSN-FDTFYLKLQKPG 190 (338)
Q Consensus 117 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~l~~~~~~ 190 (338)
-..|+.||++++.++.. --..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|. +++. .
T Consensus 60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-------G 131 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-------G 131 (176)
T ss_dssp CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-------H
T ss_pred CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-------H
Confidence 35799999999998765 33457889999999999995 775544556664 479999999985 5542 1
Q ss_pred cchhhcCCCCCCEEEccCCC-CCC
Q 019584 191 LANLAENLTNLKALDLINVH-ISS 213 (338)
Q Consensus 191 ~~~~~~~l~~L~~L~Ls~N~-l~~ 213 (338)
+ ..+..+++|++|+++++. +++
T Consensus 132 l-~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 I-IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp H-HHGGGCTTCCEEEEESCTTCCC
T ss_pred H-HHHhcCCCCCEEECCCCCCCCc
Confidence 2 245678999999999985 443
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.93 E-value=8.1e-06 Score=68.41 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=42.2
Q ss_pred hcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCC----CchhcccCCCCCeeecccc---cC
Q 019584 163 LLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISST----VPHTLANLSSLRFSSLSGC---RL 235 (338)
Q Consensus 163 l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l 235 (338)
+..-+.|+.|+|++|.+.+... ..+.+.+..-+.|++|+|++|.|++. +.+.+..-+.|++|+|++| .+
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga----~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~i 141 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEA----RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHH----TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred HhhCCCcCEEEccCCCCChHHH----HHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCc
Confidence 3444455555555555432111 12333444445555555555555432 2223333455666666543 22
Q ss_pred cc----cCchhccCCCCCCeeeccC
Q 019584 236 QG----EFPQEIFQLPNLQFLGLCG 256 (338)
Q Consensus 236 ~~----~~p~~l~~l~~L~~L~l~~ 256 (338)
.. .+.+.+...+.|+.|+++.
T Consensus 142 g~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 142 GNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CHHHHHHHHHHHHhCCCcCeEeccC
Confidence 32 1334445556666666643
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.76 E-value=1.2e-05 Score=67.34 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=67.2
Q ss_pred cCcCccEEEccCC-CCCCC---CCchhhhcCCCCcEEEcccccCccc----cchhhcCCCCCCEEEccCCCCCccccccc
Q 019584 116 QLVHLQRLSLFDN-NFNFS---EIPSAILNFSRLTHLNLSQSYFSGQ----IPAELLELSNLEVLDLSYSNFDTFYLKLQ 187 (338)
Q Consensus 116 ~l~~L~~L~L~~n-~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~ 187 (338)
+-+.|+.|+|++| .+... .+.+.+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|++....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~-- 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-- 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--
Confidence 3456666666664 54321 1234455566777777777777633 233344456777777777776532111
Q ss_pred CCCcchhhcCCCCCCEEEccCC---CCCC----CCchhcccCCCCCeeecccccCc
Q 019584 188 KPGLANLAENLTNLKALDLINV---HISS----TVPHTLANLSSLRFSSLSGCRLQ 236 (338)
Q Consensus 188 ~~~~~~~~~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~Ls~N~l~ 236 (338)
.+.+.+..-+.|++|+|++| .+.. .+...+..-+.|+.|+++.|.+.
T Consensus 117 --ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 --RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp --HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred --HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 23344555566888888754 2332 13344555677888888777654
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.74 E-value=4.7e-05 Score=59.45 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=34.5
Q ss_pred EEEccCCCCC-CCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCCCCCcCC
Q 019584 203 ALDLINVHIS-STVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGPLSKKCN 264 (338)
Q Consensus 203 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 264 (338)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..+..+++|+.|+|++|++.|+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555555554 23443322 356667777777664333445566667777777777776654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.00062 Score=63.18 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=57.7
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.|.++..|+.+.+.++.... -...+.++..|+.+.+.. .++..-...|.++.+|+.+++..+ ++ ..-.
T Consensus 260 aF~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~--------~I~~ 327 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT--------QILD 327 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC--------EECT
T ss_pred eeeecccccEEeccccccee--cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc--------EehH
Confidence 34455555555554433211 223455555666666542 233222234555566666666543 11 0112
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG 257 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 257 (338)
..|.++.+|+.+.+..+ ++......|.++.+|+.+++.++... ...+....+|+.+.+..|
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 34555666666666433 44333455556666666666555432 123444455555555443
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.26 E-value=0.0012 Score=61.33 Aligned_cols=146 Identities=17% Similarity=0.090 Sum_probs=96.3
Q ss_pred cEEEEEeCCCCceeecCCCCccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEE
Q 019584 93 HVVELDLASSCLYGSINSTSSLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVL 172 (338)
Q Consensus 93 ~l~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (338)
.++.+.+.... ...... .+..+..|+.+.+..+.... ....+..+..++.+....+.+. ...+..+.+|+.+
T Consensus 231 ~l~~i~ip~~~-~~i~~~--~f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i 302 (394)
T 4fs7_A 231 GVKNIIIPDSF-TELGKS--VFYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV 302 (394)
T ss_dssp CCCEEEECTTC-CEECSS--TTTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE
T ss_pred CCceEEECCCc-eecccc--cccccccceeEEcCCCccee--eccccccccccceeccCceeec---ccccccccccccc
Confidence 56666665432 222223 67778888888888765431 3445777888888877665432 2356777888888
Q ss_pred EccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCee
Q 019584 173 DLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFL 252 (338)
Q Consensus 173 ~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 252 (338)
.+..+ ++ ..-...|.++.+|+.+++..+ ++......|.++.+|+.+++..| ++..-..+|..+++|+.+
T Consensus 303 ~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 303 KLLDS-VK--------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp EECTT-CC--------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred ccccc-cc--------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 88765 22 112345777888888888654 55444567778888888888776 653445577788888888
Q ss_pred eccCC
Q 019584 253 GLCGG 257 (338)
Q Consensus 253 ~l~~N 257 (338)
++..+
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 87654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.0022 Score=58.91 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=91.1
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.+.....|+.+.+..+- ... ....+.++..|+.+.+..+ ++..-...+.++.+|+.+++..+- + ..-.
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i-~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i-~--------~i~~ 279 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTL-GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKV-K--------TVPY 279 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEE-CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCC-S--------EECT
T ss_pred ccccccccceeeeccce-eEE-ccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccc-e--------eccc
Confidence 34455667777765542 211 2345677888888888765 443344567778888888886552 2 1123
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG 257 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 257 (338)
..+.++.+|+.+.+.++.++......|.++.+|+.+.|..+ ++..-..+|..+++|+.+.+..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 46788899999999988887656678889999999999765 55334457888889998887554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.20 E-value=0.002 Score=59.77 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=82.0
Q ss_pred ccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchh
Q 019584 115 FQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANL 194 (338)
Q Consensus 115 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~ 194 (338)
.....|+.+.+..+.-. . -...+.++..|+.+.+..+... .....+..+..++.+....+.+. ...
T Consensus 227 ~~~~~l~~i~ip~~~~~-i-~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-----------~~~ 292 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTE-L-GKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-----------EKT 292 (394)
T ss_dssp TTTCCCCEEEECTTCCE-E-CSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-----------TTT
T ss_pred cccCCCceEEECCCcee-c-ccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-----------ccc
Confidence 34466777777654321 1 2345667788888888776544 44456777788887777655321 234
Q ss_pred hcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCC
Q 019584 195 AENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGG 257 (338)
Q Consensus 195 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 257 (338)
+..+.+|+.+.+..+ +.......|.++.+|+.+++.++ ++..-..+|..+.+|+.+++..|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 667788888888654 54444566777888888888654 55333456777888888887655
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.97 E-value=0.0031 Score=58.42 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=80.2
Q ss_pred hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcchhhcCCCCCCEEEccCCCCCCCCch
Q 019584 138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLANLAENLTNLKALDLINVHISSTVPH 217 (338)
Q Consensus 138 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 217 (338)
.|.++.+|+.+.+.++... .-...|.++++|+.+.+..+ ++ ..-...|.++.+|+.+++..+ ++.....
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~--------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-IT--------ELPESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CC--------EECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCCc-cc--------ccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence 5667788888888766543 44456788889999988643 22 112356788999999999765 5544457
Q ss_pred hcccCCCCCeeecccccCcccCchhccCCCCCCeeeccCCC
Q 019584 218 TLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCGGP 258 (338)
Q Consensus 218 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 258 (338)
.|.++.+|+.+.+..+ ++..-..+|..+++|+.+++.+|.
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 7889999999999765 663445678899999999998874
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.88 E-value=0.0059 Score=56.02 Aligned_cols=121 Identities=13% Similarity=0.046 Sum_probs=86.2
Q ss_pred ccccCcCccEEEccCCCCCCCCCchhhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccCCCCCcccccccCCCcc
Q 019584 113 SLFQLVHLQRLSLFDNNFNFSEIPSAILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNFDTFYLKLQKPGLA 192 (338)
Q Consensus 113 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~l~~~~~~~~ 192 (338)
.+.++..|+.+.+..+ ++.. -...+.++.+|+.+.+..+ ++..-...|..+.+|+.+++.++.++. .-.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--------I~~ 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--------LEP 303 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--------ECT
T ss_pred cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccce--------ehh
Confidence 6678889999999776 3322 3456788999999999765 552334568889999999999887542 224
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCchhcccCCCCCeeecccccCcccCchhccCC
Q 019584 193 NLAENLTNLKALDLINVHISSTVPHTLANLSSLRFSSLSGCRLQGEFPQEIFQL 246 (338)
Q Consensus 193 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 246 (338)
..|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++..-..+|...
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 57889999999999765 65444567889999999988654 442223344443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.40 E-value=0.0053 Score=47.57 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=20.3
Q ss_pred CCcEEEcccccCccccchhhcCCCCCCEEEccCCCC
Q 019584 144 RLTHLNLSQSYFSGQIPAELLELSNLEVLDLSYSNF 179 (338)
Q Consensus 144 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 179 (338)
+|++|+|++|+|+..-+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 456666666666633233445566666666666653
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=42.23 E-value=4 Score=23.84 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.1
Q ss_pred EeeehhhHHH
Q 019584 290 IGYASGTIIG 299 (338)
Q Consensus 290 ~~~~~~~~~~ 299 (338)
.|+++|.+++
T Consensus 14 AGiVvG~v~g 23 (38)
T 2k1k_A 14 VAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHH
T ss_pred eeeehHHHHH
Confidence 3444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.78 E-value=76 Score=22.47 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=17.6
Q ss_pred hhhcCCCCcEEEcccccCccccchhhcCCCCCCEEEccC
Q 019584 138 AILNFSRLTHLNLSQSYFSGQIPAELLELSNLEVLDLSY 176 (338)
Q Consensus 138 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 176 (338)
.|.++.+|+.+.+..+ ++..-...|.++.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3445555555555443 2212233455555555555543
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.41 E-value=87 Score=22.15 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=22.7
Q ss_pred chhcccCCCCCeeecccccCcccCchhccCCCCCCeeeccC
Q 019584 216 PHTLANLSSLRFSSLSGCRLQGEFPQEIFQLPNLQFLGLCG 256 (338)
Q Consensus 216 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 256 (338)
...|.++.+|+.+.+..+ ++..-...|..+.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345556666666666554 2323334566667777776654
Done!