BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019585
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/310 (55%), Positives = 214/310 (69%), Gaps = 10/310 (3%)
Query: 31 LKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPGN 90
L++GFY ++CP+AES+V++AV A + N GIA GLIRMHFHDCFVRGCDASVLL++ N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
+E+D NNPSLRGFEVI AK+ +EA CP TVSCADIL FAARDS + G I Y VP
Sbjct: 62 T-AEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSSFS 210
+GRRDG VSL++E +PSP FNA QL FA K ++ DEMVTL GAHSIGV+HCSSF+
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 211 KRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDP--TVTQEFVTPNRLDNK 268
RLY FN+ DP++ +A L+N CP TR TV+ + +TP+ LDN
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPA-------NSTRFTPITVSLDIITPSVLDNM 233
Query: 269 YYRELRNHRGLLTSDQTLMDSRLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTGSQG 328
YY ++ GLLTSDQ L+ S V N N W +KFA+AMV +G ++VLTG+QG
Sbjct: 234 YYTGVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQG 293
Query: 329 EIRKHCSFVN 338
EIR +CS VN
Sbjct: 294 EIRTNCSVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/308 (41%), Positives = 176/308 (57%), Gaps = 15/308 (4%)
Query: 31 LKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPGN 90
L FY + CP+A S ++ AVN AV+ + A L+R+HFHDCFV+GCDASVLL+ N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTS-N 60
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
E+ N S+RGFEVID K+Q+E++CP VSCADIL AARDS +GG ++ V
Sbjct: 61 FTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVL 120
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSSFS 210
GRRD + + +LP+P FN L + F+ KG + E+VTL GAH+IG + C++F
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 211 KRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNKYY 270
R+Y + ++D +A L+ CP L + TPN+ DN YY
Sbjct: 181 TRIY-------NESNIDPTYAKSLQANCPSVGGDTNLS-------PFDVTTPNKFDNAYY 226
Query: 271 RELRNHRGLLTSDQTLMDSRLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTGSQGEI 330
LRN +GLL SDQ L + T V N A + T F AM+ +G+L LTG+ G+I
Sbjct: 227 INLRNKKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286
Query: 331 RKHCSFVN 338
R +C N
Sbjct: 287 RTNCRKTN 294
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 178/314 (56%), Gaps = 16/314 (5%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLL---ET 86
+L FY+ TCP+ IV + A +P I A L+R+HFHDCFV+GCD SVLL +T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 IPGNPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGIN 146
I SE+D N S+RG +V+++ K +E CP+TVSCADIL AA ++ GG
Sbjct: 61 IE----SEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPG 116
Query: 147 YAVPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
+ VP GRRD + +NLP+P FN QL A FA +G++ ++VTL G H+ G + C
Sbjct: 117 WPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARC 176
Query: 207 SSFSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLD 266
S+F RLY F+ T DP+++ + L+ +CP T D + TP++ D
Sbjct: 177 STFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQ-------NATGDNLTNLDLSTPDQFD 229
Query: 267 NKYYRELRNHRGLLTSDQTLMDSRLTSKMVLDN--ERNGAMWGTKFAKAMVHVGSLDVLT 324
N+YY L GLL SDQ L + + + N N + + F +M+ +G++ VLT
Sbjct: 230 NRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLT 289
Query: 325 GSQGEIRKHCSFVN 338
G +GEIR C+FVN
Sbjct: 290 GDEGEIRLQCNFVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 213 bits (541), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 179/315 (56%), Gaps = 18/315 (5%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY TCP+A +IVR + +A+ + I A LIR+HFHDCFV GCDAS+LL+ G
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDT-G 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+ SE++ N S RGF V+D K +E CP VSC+D+L A+ S S GG ++ V
Sbjct: 61 SIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 150 PAGRRDGRVSLSNEIA---ENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
GRRD SL+ +A ++PSP + + +F+ G++ +++V L GAH+ G + C
Sbjct: 121 LLGRRD---SLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARC 177
Query: 207 SSFSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQ-EFVTPNRL 265
F+ RL+ F+ T DP+++ + L+ CP T+T + TP+
Sbjct: 178 GVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSAS--------TITNLDLSTPDAF 229
Query: 266 DNKYYRELRNHRGLLTSDQTLMDSRLTSK--MVLDNERNGAMWGTKFAKAMVHVGSLDVL 323
DN Y+ L+++ GLL SDQ L + +S +V N ++ FA++M+++G++ L
Sbjct: 230 DNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPL 289
Query: 324 TGSQGEIRKHCSFVN 338
TGS GEIR C VN
Sbjct: 290 TGSNGEIRLDCKKVN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 170/313 (54%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C S
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDMDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G HS G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 210 bits (535), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 169/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 168/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP P F QL F G++ ++V L G H+ G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 168/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HFHDCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP P F QL F G++ ++V L G H+ G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 168/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++R+HF DCFV GCDAS+LL+
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 62 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 233
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 294 TQGQIRLNCRVVN 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 172/313 (54%), Gaps = 18/313 (5%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L Y +CP+ IVRK V A+ +AA LIR+HFHDCFV GCDAS+LL+
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLD---- 56
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
SE+ N S RGFEVID KA +E CP VSCADILT AARDS GG + V
Sbjct: 57 GADSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRV 116
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSSF 209
GR+DG V+ N A NLPSP + + A+F +++ ++V L GAH+ G + C+ F
Sbjct: 117 ALGRKDGLVANQNS-ANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVF 175
Query: 210 SKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNKY 269
S RL+ F D +++ + L+ CP LG + T + T + DN Y
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCP-------LGGNSNITAPLDRSTTDTFDNNY 228
Query: 270 YRELRNHRGLLTSDQTLMDSRL----TSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
++ L +GLL+SDQ L S L T K+V R+ +++ F AM+ +G++ G
Sbjct: 229 FKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NG 286
Query: 326 SQGEIRKHCSFVN 338
+ GE+R +C +N
Sbjct: 287 ASGEVRTNCRVIN 299
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 167/313 (53%), Gaps = 12/313 (3%)
Query: 30 KLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPG 89
+L FY ++CP+ +IVR + + +P IAA ++ +HF DCFV GCDAS+LL+
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 90 NPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAV 149
+E+D N S RGF VID KA +E+ CP TVSCAD+LT AA+ S + GG ++ V
Sbjct: 61 FR-TEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 150 PAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGIS-VDEMVTLVGAHSIGVSHCSS 208
P GRRD + + NLP+P F QL F G++ ++V L G H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
RLY F+ T DP+++ + L+ CP L V + TP DNK
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP-------LNGNLSALVDFDLRTPTIFDNK 232
Query: 269 YYRELRNHRGLLTSDQTLMDS---RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTG 325
YY L +GL+ SDQ L S T +V + + F +AM +G++ LTG
Sbjct: 233 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 292
Query: 326 SQGEIRKHCSFVN 338
+QG+IR +C VN
Sbjct: 293 TQGQIRLNCRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 170/312 (54%), Gaps = 10/312 (3%)
Query: 29 AKLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIP 88
L FY TCP+A ++VR V +A + I A LIR+HFHDCFV GCDAS+LL+
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDN-S 60
Query: 89 GNPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYA 148
G+ SE++ N S RGF V+D K +E CP VSC D+L A++ S S GG ++
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 149 VPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V GRRD + ++PSPT + ++F+ G++ +++V L GAH+ G + C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 209 FSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFVTPNRLDNK 268
FS RL+ F+ DP+++ + L+ CP G + + TP+ DN
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSG-------STNLDLSTPDAFDNN 233
Query: 269 YYRELRNHRGLLTSDQTLMDS--RLTSKMVLDNERNGAMWGTKFAKAMVHVGSLDVLTGS 326
Y+ L+++ GLL SDQ L + T +V N ++ FA++M+++G++ LTGS
Sbjct: 234 YFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGS 293
Query: 327 QGEIRKHCSFVN 338
GEIR C N
Sbjct: 294 SGEIRLDCKKTN 305
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 201 bits (512), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 128/318 (40%), Positives = 181/318 (56%), Gaps = 31/318 (9%)
Query: 31 LKVGFYKSTCPSAESIVRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLE---TI 87
L FY TCP AESIVR+ V +AV + G+AAGL+R+HFHDCFV+GCDASVLL+ T
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 88 PGN---PPSERDDHVNNPSLR--GFEVIDEAKAQIEAVCPN-TVSCADILTFAARDSTSK 141
PG PP N +LR F+ +++ + ++E C VSC+DIL AARDS
Sbjct: 69 PGEQQAPP--------NLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVV 120
Query: 142 VGGINYAVPAGRRDGR-VSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHS 200
GG +Y VP GRRD R + + ++ +LP P+ N + L A R G+ ++VT+ G H+
Sbjct: 121 SGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHT 180
Query: 201 IGVSHCSSFSKRLYAFNTTHPQDPSMDHRFANFLKNKCPPPPPTDGLGCTRDPTVTQEFV 260
IG++HCSSF RL+ P DP++ F + LK CP G R + +
Sbjct: 181 IGLAHCSSFEDRLFP----RP-DPTISPTFLSRLKRTCP------AKGTDRRTVL--DVR 227
Query: 261 TPNRLDNKYYRELRNHRGLLTSDQTLMDSRLTSKMVLDNERNGAMWGTKFAKAMVHVGSL 320
TPN DNKYY +L N GL SDQ L + +T +V ++ + +F ++ +G +
Sbjct: 228 TPNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQM 287
Query: 321 DVLTGSQGEIRKHCSFVN 338
V T QGE+R++CS N
Sbjct: 288 RVRTSDQGEVRRNCSVRN 305
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V+L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVSLLASHSIAAA 174
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 47 VRKAVNKAVSCNPGIAAGLIRMHFH-----DCFVR-GCDASVLLETIP-----GNPPSER 95
+R + +S + LIR+ +H DCF + G S + P GN
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGN----- 66
Query: 96 DDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRD 155
+G ++ +A ++ P +S AD+ AA + +GG GR D
Sbjct: 67 ---------KGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVD 116
Query: 156 GRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSH 205
+ LP + + F R G + E V L+GAH+ G +H
Sbjct: 117 AKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETH 166
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPQDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPGPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVWLLASHSIAAA 174
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 24/148 (16%)
Query: 66 IRMHFHDCFV-------RGCDASVL-LETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQI 117
+R+ FHD G D S++ +TI N P+ G + I AQ
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTI----------ETNFPANAGIDEI--VSAQK 89
Query: 118 EAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAE 176
V + +S D + FA S GG+ GR D + + + +P P + +
Sbjct: 90 PFVAKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAASPDHL---VPEPFDSVD 146
Query: 177 QLAARFARKGISVDEMVTLVGAHSIGVS 204
+ AR G S E+V L+ +HSI +
Sbjct: 147 SILARMGDAGFSPVEVVYLLASHSIAAA 174
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 26/170 (15%)
Query: 47 VRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPGNPPSERDDHVNNPSLR- 105
+R + +S + LIR+ +H+ C ++D N+ S+R
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDC--------------FKKDGSPNSASMRF 57
Query: 106 ----------GFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRD 155
G ++ +A ++ P +S AD+ AA + +GG GR D
Sbjct: 58 KPECLYAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVD 116
Query: 156 GRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSH 205
+ LP + + F R G + E V L+GAH+ G H
Sbjct: 117 AKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH 166
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 63/170 (37%), Gaps = 26/170 (15%)
Query: 47 VRKAVNKAVSCNPGIAAGLIRMHFHDCFVRGCDASVLLETIPGNPPSERDDHVNNPSLR- 105
+R + +S + LIR+ +H+ C ++D N+ S+R
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDC--------------FKKDGSPNSASMRF 56
Query: 106 ----------GFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRD 155
G ++ +A ++ P +S AD+ AA + +GG GR D
Sbjct: 57 KPECLYAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVD 115
Query: 156 GRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSH 205
+ LP + + F R G + E V L+GAH+ G H
Sbjct: 116 AKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH 165
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 125 VSCADILTFA-ARDSTSKVGGINYAVPAGRRDGRVSLSNEIAENL-PSPTFNAEQLAARF 182
VS D + FA A + + GG AGR + +S + L P PT +A+++ AR
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSN----ISQPSPDGLVPDPTDSADKILARM 159
Query: 183 ARKGISVDEMVTLVGAHSIGVSH 205
A G S E+V L+ +HSI +
Sbjct: 160 ADIGFSPTEVVHLLASHSIAAQY 182
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ +H F +G TI
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTI--K 72
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 73 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ +H F +G TI
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTI--K 72
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 73 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ +H F +G TI
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTI--K 72
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 73 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ +H F +G TI
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWHSAGTFDKGTKTGGPFGTI--K 60
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 61 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 115
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 116 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G AGR D
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTP 134
Query: 158 VSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
+ + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 135 EDTTPDNGR-LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++++ +H F +G TI
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLKLAWHSAGTFDKGTKTGGPFGTI--K 60
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 61 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 115
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 116 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ H F +G TI
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAHSAGTFDKGTKTGGPFGTI--K 72
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 73 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G AGR D
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTP 136
Query: 158 VSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
+ + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 137 EDTTPDNGR-LPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 65 LIRMHFHDCFV----------RGCDASVLL-ETIPGNPPSER--DDHVNNPSLRGFEVID 111
+IR+ FHD G D S+LL T+ N + DD VNN +I
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNN-------LIP 92
Query: 112 EAKAQIEAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPS 170
+ NT+S AD++ FA + S G AGR + ++ + + +P
Sbjct: 93 FMQKH------NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGL---IPE 143
Query: 171 PTFNAEQLAARFARK-GISVDEMVTLVGAHSI 201
P + ++ RF G + E+V+L+ +HS+
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 65 LIRMHFHDCFV----------RGCDASVLL-ETIPGNPPSER--DDHVNNPSLRGFEVID 111
+IR+ FHD G D S+LL T+ N + DD VNN +I
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNN-------LIP 92
Query: 112 EAKAQIEAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPS 170
+ NT+S AD++ FA + S G AGR + ++ + + +P
Sbjct: 93 FMQKH------NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGL---IPE 143
Query: 171 PTFNAEQLAARFARK-GISVDEMVTLVGAHSI 201
P + ++ RF G + E+V+L+ +HS+
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
>pdb|3T24|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Opdq
pdb|3T24|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Opdq
Length = 401
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 3 YAKMDSCMIMCILILVSTMPLGTSANAKLKVGFYKSTCPSAESIVRKAVNKAVSCNPGIA 62
Y K+D+ L LV T+P+ + K + + +ST + ++ KA+N + + G
Sbjct: 211 YGKLDNFYKQHYLGLVHTLPIADKQSLKSDIRWARSTDDGSSNVDNKALNAMFTYSLGYH 270
Query: 63 A 63
A
Sbjct: 271 A 271
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 65 LIRMHFHDCFV----------RGCDASVLL-ETIPGNPPSER--DDHVNNPSLRGFEVID 111
+IR+ FHD G D S+LL T+ N + DD VNN +I
Sbjct: 40 VIRLTFHDAIAISRSQGPKAGGGADGSMLLFPTVEPNFSANNGIDDSVNN-------LIP 92
Query: 112 EAKAQIEAVCPNTVSCADILTFAARDSTSKV-GGINYAVPAGRRDGRVSLSNEIAENLPS 170
+ NT+S AD++ FA + S G AGR + ++ + + +P
Sbjct: 93 FMQKH------NTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGL---IPE 143
Query: 171 PTFNAEQLAARFARK-GISVDEMVTLVGAHSI 201
P + ++ RF G + E+V+L+ +HS+
Sbjct: 144 PQDSVTKILQRFEDAGGFTPFEVVSLLASHSV 175
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN 184
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN 184
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 23/178 (12%)
Query: 39 TCPSAESIVRKAVNKAVS----------CNPGIAAGLIRMHFHDCFVRGCDASVLLETIP 88
+ P+ + +KAV KA C P + A + H F +G TI
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLA--LAWHSAGTFDKGTKTGGPFGTI- 59
Query: 89 GNPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYA 148
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 60 -KHPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVP 113
Query: 149 VPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 114 FHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN 184
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKN 184
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 75 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 129
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 130 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 183
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 125 VSCADILTFAARDSTSKVGGINYAVPAGRRDGRVSLSNEIAEN---LPSPTFNAEQLAAR 181
+S D+ + + ++ G +P R GRV + + LP +A+ +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDADYVRTF 159
Query: 182 FARKGISVDEMVTLVGAHSIGVSHCSS 208
F R ++ E+V L+GAH++G +H +
Sbjct: 160 FQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 125 VSCADILTFAARDSTSKVGGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFAR 184
VS AD A + GG GR D LP T ++ L F +
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 185 K-GISVDEMVTLVGAHSIGVSH 205
G+S ++V L G H+IG +H
Sbjct: 147 AMGLSDQDIVALSGGHTIGAAH 168
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 133 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 128 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 69 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGPK--IPW--RCGR 123
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 124 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 175
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 75 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 129
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 130 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHC 206
V + + LP +A+ + F R ++ E+V L+GAH++G +H
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 168 LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
LP +A+ + F R ++ E+V L+GAH++G +H +
Sbjct: 146 LPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A+ + F R ++ E+V L GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKN 184
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ + F +G TI
Sbjct: 15 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAWASAGTFDKGTKTGGPFGTI--K 72
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 73 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 127
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 128 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 156 GRVSLSNEIAENLPSPTFNAEQLAARFARKGISVDEMVTLV-GAHSIGVSHCS 207
G + ++ E P P +A+ + F R G++ E V L+ G H+ G +H +
Sbjct: 248 GLIYVNPEGPNGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGA 300
>pdb|2HRO|A Chain A, Structure Of The Full-Lenght Enzyme I Of The Pts System
From Staphylococcus Carnosus
Length = 573
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 79 DASVLLETIPGNPPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDS 138
DA LLE N +E G+EV D+ + I P+T + ADI FA
Sbjct: 402 DAKALLEEERANLKNE-----------GYEVADDIELGIMVEIPSTAALADI--FAKEVD 448
Query: 139 TSKVGG---INYAVPAGRRDGRVS 159
+G I Y + A R RVS
Sbjct: 449 FFSIGTNDLIQYTMAADRMSERVS 472
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 168 LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSI 201
+P P + RF G S DE+V L+ AHS+
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL 185
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 39 TCPSAESIVRKAVNKAVSCNPGIAAG------LIRMHFHDC--FVRGCDASVLLETIPGN 90
+ P+ + +KAV KA G A ++R+ + F +G TI
Sbjct: 3 SYPTVSADYQKAVEKAKKKLRGFIAEKRCAPLMLRLAAYSAGTFDKGTKTGGPFGTI--K 60
Query: 91 PPSERDDHVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVP 150
P+E NN G ++ ++A P +S AD A + GG
Sbjct: 61 HPAELAHSANN----GLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFH 115
Query: 151 AGRRDGRVSLSNEIAENLPSPTFNAEQLAARFARK-GISVDEMVTLVGAHSIGVSH 205
GR D LP T ++ L F + G++ ++V L G H+IG +H
Sbjct: 116 PGRED---KPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 133
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 187
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 133
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 187
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 133
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 187
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 79 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 133
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 134 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 187
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 78 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 132
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 133 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 128
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 182
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 99 VNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGRV 158
N+PS G + + I P +S D+ + + ++ G +P R GRV
Sbjct: 74 FNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRV 128
Query: 159 SLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
+ + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 74 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 128
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 129 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 182
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 125 VSCADILTFAARDSTSKVGGINYAVPAGRRDGRVSLSNEIAEN---LPSPTFNAEQLAAR 181
+S D+ + + ++ G +P R GRV + + LP +A +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTPDNGRLPDADKDAGYVRTF 159
Query: 182 FARKGISVDEMVTLVGAHSIGVSHCSS 208
F R ++ E+V L+GAH++G +H +
Sbjct: 160 FQRLNMNDREVVALMGAHALGKTHLKN 186
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 73 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 127
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 128 VDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 181
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 125 VSCADILTFAARDSTSKVGGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFAR 184
+S AD A + GG GR D LP T ++ L F +
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 185 K-GISVDEMVTLVGAHSIGVSH 205
G++ ++V L G H+IG +H
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH 180
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 98 HVNNPSLRGFEVIDEAKAQIEAVCPNTVSCADILTFAARDSTSKVGGINYAVPAGRRDGR 157
N+PS G + + I P +S D+ + + ++ G +P R GR
Sbjct: 76 EFNDPSNAGLQNGFKFLEPIHKEFP-WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGR 130
Query: 158 VSLSNEIAEN---LPSPTFNAEQLAARFARKGISVDEMVTLVGAHSIGVSHCSS 208
V + + LP +A + F R ++ E+V L+GAH++G +H +
Sbjct: 131 VDTPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKN 184
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 125 VSCADILTFAARDSTSKVGGINYAVPAGRRDGRVSLSNEIAENLPSPTFNAEQLAARFAR 184
+S AD A + GG GR D LP T ++ L F +
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 185 K-GISVDEMVTLVGAHSIGVSH 205
G++ ++V L G H+IG +H
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAH 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,837,675
Number of Sequences: 62578
Number of extensions: 398480
Number of successful extensions: 1036
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 122
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)