BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019586
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 2 QQNNYIEAEDAYRRALSIAPD-NNKMCNLGICLMKQGRIGEA----KETLRRVKPAVADG 56
+Q N EA YR+AL + P+ NL L +QG++ EA KE + R+ P AD
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI-RISPTFADA 79
Query: 57 PRGVDSHLKAYERAQQMLK 75
+ + LK + Q L+
Sbjct: 80 YSNMGNTLKEMQDVQGALQ 98
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 74 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104
KDL +M + GG R E+ + F+ F G ++I
Sbjct: 177 FKDLHFKMFDVGGQRSERKKWFECFEGVTAI 207
>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3R31|B Chain B, Crystal Structure Of Betaine Aldehyde Dehydrogenase From
Agrobacterium Tumefaciens
Length = 517
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 264 RLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKR 323
L + E G K ++ DD D E A+ A+LG+ SN + V ++KK R
Sbjct: 251 HLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSS---GQVCSNGTRVFVQKKAKAR 307
Query: 324 L 324
Sbjct: 308 F 308
>pdb|2KHJ|A Chain A, Nmr Structure Of The Domain 6 Of The E. Coli Ribosomal
Protein S1
Length = 109
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 19 IAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78
+ P + M N + L K+G I K T K A + GV+ +L+A E ++ ++D
Sbjct: 14 LVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVED-- 71
Query: 79 SEMMNKGGDRVE 90
+ ++ GD VE
Sbjct: 72 ATLVLSVGDEVE 83
>pdb|1PYF|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Apo)
pdb|1PZ0|A Chain A, Structure Of Nadph-Dependent Family 11 Aldo-Keto Reductase
Akr11a(Holo)
Length = 312
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 153 FPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKE 212
FP + QE+F E NI R V +LAP N+D P + ++
Sbjct: 221 FPEGDLRNEQEHFKGERFKENI----------RKVNKLAPIAEKHNVDIPHIVLAWYLAR 270
Query: 213 P 213
P
Sbjct: 271 P 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,955,083
Number of Sequences: 62578
Number of extensions: 402933
Number of successful extensions: 807
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 11
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)