Query 019586
Match_columns 338
No_of_seqs 262 out of 1962
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:56:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.8 2.3E-19 5E-24 182.7 12.2 196 2-203 230-453 (966)
2 KOG4626 O-linked N-acetylgluco 99.7 2.8E-17 6.1E-22 167.6 12.5 175 2-176 298-500 (966)
3 KOG0548 Molecular co-chaperone 99.6 1.6E-14 3.5E-19 145.7 12.1 170 1-198 13-184 (539)
4 TIGR00990 3a0801s09 mitochondr 99.5 7.6E-14 1.6E-18 145.6 15.9 194 2-199 343-571 (615)
5 PRK11189 lipoprotein NlpI; Pro 99.5 5.5E-13 1.2E-17 127.7 14.0 194 3-200 39-266 (296)
6 KOG0553 TPR repeat-containing 99.5 1.2E-13 2.7E-18 131.5 7.7 96 1-117 92-188 (304)
7 PRK15359 type III secretion sy 99.4 1.2E-12 2.5E-17 113.0 10.8 105 9-115 12-129 (144)
8 TIGR00990 3a0801s09 mitochondr 99.4 7.1E-12 1.5E-16 130.9 18.7 169 2-170 377-573 (615)
9 PRK09782 bacteriophage N4 rece 99.4 1.3E-12 2.8E-17 143.4 11.5 284 2-334 521-832 (987)
10 PRK10370 formate-dependent nit 99.4 6.2E-12 1.3E-16 114.3 13.9 111 3-113 52-179 (198)
11 PRK11447 cellulose synthase su 99.4 6.1E-12 1.3E-16 140.4 14.4 112 2-113 281-420 (1157)
12 KOG1126 DNA-binding cell divis 99.4 2.9E-12 6.4E-17 132.0 10.4 181 17-201 414-622 (638)
13 PRK09782 bacteriophage N4 rece 99.3 1.4E-11 2.9E-16 135.4 15.2 138 3-141 589-743 (987)
14 PRK12370 invasion protein regu 99.3 1.6E-11 3.5E-16 127.2 15.0 110 4-113 275-407 (553)
15 TIGR02521 type_IV_pilW type IV 99.3 6.8E-11 1.5E-15 103.4 15.2 137 2-138 43-198 (234)
16 PRK12370 invasion protein regu 99.3 3.5E-11 7.5E-16 124.7 13.1 139 3-141 317-473 (553)
17 TIGR02521 type_IV_pilW type IV 99.3 9.6E-11 2.1E-15 102.5 13.7 112 2-113 77-204 (234)
18 PRK15359 type III secretion sy 99.3 3.3E-11 7.2E-16 103.9 10.4 85 57-141 37-124 (144)
19 PRK15174 Vi polysaccharide exp 99.3 8.5E-11 1.8E-15 124.4 15.6 143 2-144 224-387 (656)
20 PRK15174 Vi polysaccharide exp 99.3 9.5E-11 2.1E-15 124.0 15.4 192 3-199 89-313 (656)
21 COG3063 PilF Tfp pilus assembl 99.2 1.4E-10 3.1E-15 107.4 13.3 112 1-113 46-174 (250)
22 PLN03088 SGT1, suppressor of 99.2 8.3E-11 1.8E-15 115.9 11.9 92 2-114 14-106 (356)
23 PRK15363 pathogenicity island 99.2 7.4E-11 1.6E-15 103.9 10.1 89 2-111 47-136 (157)
24 PRK11447 cellulose synthase su 99.2 2.5E-10 5.4E-15 127.6 16.0 112 2-113 363-530 (1157)
25 TIGR02552 LcrH_SycD type III s 99.2 1.5E-10 3.2E-15 96.5 10.3 103 11-113 4-120 (135)
26 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-10 4.9E-15 109.7 12.4 76 3-78 77-166 (296)
27 KOG1126 DNA-binding cell divis 99.2 6.7E-11 1.5E-15 122.1 9.2 153 3-155 434-603 (638)
28 KOG0547 Translocase of outer m 99.2 1.8E-10 3.9E-15 115.8 11.5 193 3-199 339-566 (606)
29 PRK11788 tetratricopeptide rep 99.1 6.7E-10 1.5E-14 107.9 14.4 139 3-141 120-281 (389)
30 TIGR02917 PEP_TPR_lipo putativ 99.1 1.2E-09 2.6E-14 113.9 16.1 138 2-140 647-801 (899)
31 PRK15179 Vi polysaccharide bio 99.1 4.5E-10 9.7E-15 119.6 12.8 111 2-112 98-222 (694)
32 TIGR02917 PEP_TPR_lipo putativ 99.1 1.1E-09 2.5E-14 114.0 15.4 184 2-190 681-891 (899)
33 COG3063 PilF Tfp pilus assembl 99.1 7E-10 1.5E-14 102.9 11.0 112 2-113 81-208 (250)
34 PRK11788 tetratricopeptide rep 99.1 2.2E-09 4.8E-14 104.3 14.2 140 2-141 47-212 (389)
35 PF13414 TPR_11: TPR repeat; P 99.1 7.1E-10 1.5E-14 82.7 7.7 66 23-109 2-69 (69)
36 PLN02789 farnesyltranstransfer 99.0 3.4E-09 7.3E-14 103.4 13.8 114 2-115 49-179 (320)
37 KOG1125 TPR repeat-containing 99.0 1.7E-09 3.6E-14 110.6 10.5 134 7-140 336-529 (579)
38 TIGR03302 OM_YfiO outer membra 99.0 7.6E-09 1.6E-13 94.4 12.9 112 2-113 45-201 (235)
39 KOG1173 Anaphase-promoting com 99.0 3E-09 6.5E-14 108.5 10.4 145 2-146 324-526 (611)
40 cd00189 TPR Tetratricopeptide 98.9 6.4E-09 1.4E-13 76.5 9.1 88 2-110 12-100 (100)
41 PF13429 TPR_15: Tetratricopep 98.9 1.9E-09 4.2E-14 101.4 7.4 128 3-130 123-269 (280)
42 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.4E-08 3E-13 81.7 11.1 91 2-113 14-111 (119)
43 KOG0548 Molecular co-chaperone 98.9 3.3E-09 7.1E-14 107.7 8.7 92 2-114 370-462 (539)
44 PRK10049 pgaA outer membrane p 98.9 1.1E-08 2.5E-13 109.9 13.2 138 4-141 251-425 (765)
45 KOG1155 Anaphase-promoting com 98.9 1.2E-08 2.5E-13 102.5 11.7 110 4-113 344-467 (559)
46 PRK10049 pgaA outer membrane p 98.9 1.8E-08 4E-13 108.3 14.3 137 3-141 28-181 (765)
47 KOG0547 Translocase of outer m 98.9 1.3E-08 2.8E-13 102.7 11.9 149 2-150 372-544 (606)
48 PF12895 Apc3: Anaphase-promot 98.9 4E-09 8.8E-14 82.1 6.2 81 2-104 1-84 (84)
49 PF13432 TPR_16: Tetratricopep 98.9 6.3E-09 1.4E-13 76.8 6.6 64 28-112 2-65 (65)
50 PRK15179 Vi polysaccharide bio 98.8 4.6E-08 1E-12 104.3 14.0 122 19-140 81-219 (694)
51 PRK02603 photosystem I assembl 98.8 3.5E-08 7.7E-13 86.9 10.8 85 28-112 40-154 (172)
52 KOG1125 TPR repeat-containing 98.8 5E-09 1.1E-13 107.1 6.0 107 7-113 411-533 (579)
53 PRK14574 hmsH outer membrane p 98.8 5.6E-08 1.2E-12 105.4 14.2 143 2-144 46-204 (822)
54 PRK10153 DNA-binding transcrip 98.8 4.6E-08 1E-12 101.2 12.9 109 4-113 356-488 (517)
55 cd05804 StaR_like StaR_like; a 98.8 7.6E-08 1.6E-12 92.5 13.5 139 2-140 55-217 (355)
56 TIGR03302 OM_YfiO outer membra 98.8 5.5E-08 1.2E-12 88.7 11.3 108 2-109 82-234 (235)
57 PF13429 TPR_15: Tetratricopep 98.8 1.4E-08 2.9E-13 95.7 7.3 140 2-141 89-246 (280)
58 CHL00033 ycf3 photosystem I as 98.8 8.7E-08 1.9E-12 83.8 11.7 86 28-113 40-155 (168)
59 PRK10370 formate-dependent nit 98.7 9E-08 2E-12 87.1 10.1 143 30-199 23-173 (198)
60 KOG1173 Anaphase-promoting com 98.7 5.4E-08 1.2E-12 99.5 9.5 113 1-113 391-524 (611)
61 KOG1155 Anaphase-promoting com 98.6 3.9E-07 8.5E-12 91.7 13.6 146 5-150 242-439 (559)
62 COG4235 Cytochrome c biogenesi 98.6 4E-07 8.7E-12 87.3 13.0 109 5-113 137-262 (287)
63 COG5010 TadD Flp pilus assembl 98.6 2E-07 4.3E-12 87.8 10.1 91 2-113 112-203 (257)
64 KOG0553 TPR repeat-containing 98.6 1.4E-07 3E-12 90.5 8.4 144 6-149 31-189 (304)
65 PRK10747 putative protoheme IX 98.6 5.3E-07 1.2E-11 89.9 12.8 47 2-48 165-212 (398)
66 KOG2076 RNA polymerase III tra 98.6 4.9E-07 1.1E-11 96.5 12.8 108 3-110 152-273 (895)
67 KOG2002 TPR-containing nuclear 98.6 1.1E-07 2.5E-12 101.9 7.6 191 2-197 176-440 (1018)
68 PF13414 TPR_11: TPR repeat; P 98.6 1E-07 2.2E-12 70.9 5.1 47 2-48 15-63 (69)
69 KOG0550 Molecular chaperone (D 98.6 1.5E-07 3.3E-12 93.6 7.6 174 3-176 62-331 (486)
70 PF06552 TOM20_plant: Plant sp 98.6 4E-07 8.8E-12 81.9 9.6 94 6-113 7-115 (186)
71 KOG1840 Kinesin light chain [C 98.6 3.8E-07 8.3E-12 94.0 10.8 109 2-110 253-399 (508)
72 PLN02789 farnesyltranstransfer 98.5 1E-06 2.3E-11 86.0 13.2 110 5-114 87-219 (320)
73 KOG0543 FKBP-type peptidyl-pro 98.5 3E-07 6.6E-12 91.2 9.3 93 2-115 220-328 (397)
74 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 3.1E-07 6.8E-12 92.7 9.5 68 19-107 70-141 (453)
75 PRK15363 pathogenicity island 98.5 4.2E-07 9E-12 80.3 9.0 91 26-137 38-131 (157)
76 PF09976 TPR_21: Tetratricopep 98.5 1.1E-06 2.4E-11 75.3 11.5 103 2-105 23-145 (145)
77 PRK15331 chaperone protein Sic 98.5 3.5E-07 7.7E-12 81.2 8.5 90 2-113 49-139 (165)
78 PRK10803 tol-pal system protei 98.5 9.5E-07 2.1E-11 84.1 11.9 91 2-113 155-252 (263)
79 KOG4648 Uncharacterized conser 98.5 1.4E-07 3.1E-12 92.2 6.2 92 1-113 108-200 (536)
80 KOG3060 Uncharacterized conser 98.5 1.9E-06 4.1E-11 81.3 12.5 139 3-141 65-223 (289)
81 PF13432 TPR_16: Tetratricopep 98.5 2.5E-07 5.5E-12 68.2 5.2 56 2-78 9-65 (65)
82 KOG4234 TPR repeat-containing 98.5 9.1E-07 2E-11 81.2 9.4 91 2-113 107-203 (271)
83 KOG1174 Anaphase-promoting com 98.5 1.3E-06 2.8E-11 87.2 11.1 150 2-151 346-513 (564)
84 KOG0624 dsRNA-activated protei 98.5 2.3E-06 5.1E-11 83.8 12.6 182 4-200 86-299 (504)
85 TIGR02552 LcrH_SycD type III s 98.5 9.4E-07 2E-11 73.5 8.7 80 2-81 29-122 (135)
86 PF14559 TPR_19: Tetratricopep 98.4 4E-07 8.6E-12 67.4 5.8 65 1-86 2-67 (68)
87 PRK11906 transcriptional regul 98.4 1.5E-06 3.2E-11 88.1 11.2 122 6-141 274-404 (458)
88 PF13371 TPR_9: Tetratricopept 98.4 7E-07 1.5E-11 67.0 6.8 55 59-113 10-64 (73)
89 PF13424 TPR_12: Tetratricopep 98.4 2E-07 4.3E-12 71.1 3.9 69 25-107 6-75 (78)
90 KOG4162 Predicted calmodulin-b 98.4 1.4E-06 3E-11 92.0 11.3 111 3-113 663-789 (799)
91 COG5010 TadD Flp pilus assembl 98.4 2.9E-06 6.3E-11 80.0 12.2 131 6-136 49-195 (257)
92 PLN03088 SGT1, suppressor of 98.4 1.3E-06 2.8E-11 86.3 9.6 87 58-144 16-105 (356)
93 cd00189 TPR Tetratricopeptide 98.4 2.2E-06 4.8E-11 62.8 7.8 90 27-137 4-96 (100)
94 KOG2003 TPR repeat-containing 98.4 2.4E-06 5.1E-11 86.2 10.2 160 2-162 502-683 (840)
95 PF14559 TPR_19: Tetratricopep 98.3 7.9E-07 1.7E-11 65.7 5.1 57 57-113 4-60 (68)
96 KOG2076 RNA polymerase III tra 98.3 1.3E-05 2.7E-10 86.0 15.7 140 2-141 219-515 (895)
97 TIGR00540 hemY_coli hemY prote 98.3 7.5E-06 1.6E-10 81.9 13.1 112 2-113 165-298 (409)
98 KOG1129 TPR repeat-containing 98.3 7E-06 1.5E-10 80.1 11.7 139 3-141 269-427 (478)
99 PF12688 TPR_5: Tetratrico pep 98.3 1.4E-05 3.1E-10 67.5 12.0 83 3-106 14-103 (120)
100 KOG4642 Chaperone-dependent E3 98.3 2.1E-06 4.6E-11 80.4 7.4 84 4-108 24-108 (284)
101 PF13371 TPR_9: Tetratricopept 98.3 5.1E-06 1.1E-10 62.2 8.0 64 1-85 6-70 (73)
102 TIGR00540 hemY_coli hemY prote 98.3 6.5E-06 1.4E-10 82.3 11.0 128 9-136 244-397 (409)
103 COG2956 Predicted N-acetylgluc 98.2 1.8E-05 3.9E-10 77.1 13.1 141 4-144 49-249 (389)
104 KOG1129 TPR repeat-containing 98.2 1.1E-05 2.3E-10 78.9 11.6 138 4-141 304-461 (478)
105 KOG0550 Molecular chaperone (D 98.2 3.4E-06 7.3E-11 84.1 8.3 107 4-110 217-353 (486)
106 TIGR02795 tol_pal_ybgF tol-pal 98.2 1E-05 2.2E-10 64.8 9.8 95 26-141 5-108 (119)
107 PRK02603 photosystem I assembl 98.2 8.7E-06 1.9E-10 71.6 10.1 57 57-113 48-107 (172)
108 KOG0624 dsRNA-activated protei 98.2 4E-06 8.6E-11 82.2 8.4 121 3-144 51-190 (504)
109 CHL00033 ycf3 photosystem I as 98.2 1.1E-05 2.4E-10 70.5 10.1 84 28-113 21-107 (168)
110 cd05804 StaR_like StaR_like; a 98.2 1.1E-05 2.5E-10 77.4 11.2 138 3-140 19-179 (355)
111 COG4783 Putative Zn-dependent 98.2 1.5E-05 3.3E-10 80.7 11.9 104 3-106 319-436 (484)
112 KOG2002 TPR-containing nuclear 98.2 5.2E-06 1.1E-10 89.5 8.9 116 3-118 625-756 (1018)
113 KOG1840 Kinesin light chain [C 98.1 7.3E-06 1.6E-10 84.7 8.7 136 2-137 211-395 (508)
114 PRK14574 hmsH outer membrane p 98.1 3.5E-05 7.6E-10 84.0 14.3 162 13-174 23-211 (822)
115 COG2956 Predicted N-acetylgluc 98.1 9.5E-06 2.1E-10 79.0 8.3 140 1-141 118-281 (389)
116 PF13431 TPR_17: Tetratricopep 98.1 3.6E-06 7.8E-11 55.5 3.4 34 66-99 1-34 (34)
117 KOG1174 Anaphase-promoting com 98.1 4.1E-05 8.8E-10 76.7 12.0 112 2-113 244-369 (564)
118 KOG3060 Uncharacterized conser 98.0 2.5E-05 5.4E-10 73.9 9.6 111 3-113 99-226 (289)
119 KOG4555 TPR repeat-containing 98.0 4.4E-05 9.5E-10 66.1 10.2 84 3-107 56-144 (175)
120 PF12569 NARP1: NMDA receptor- 98.0 5.1E-05 1.1E-09 78.7 12.5 132 1-132 49-285 (517)
121 PF13512 TPR_18: Tetratricopep 98.0 4E-05 8.7E-10 66.7 9.3 88 26-113 13-134 (142)
122 PRK10747 putative protoheme IX 98.0 0.00011 2.4E-09 73.4 13.6 191 3-199 97-357 (398)
123 KOG1128 Uncharacterized conser 98.0 4.3E-05 9.4E-10 80.6 11.0 171 3-173 437-621 (777)
124 PRK10866 outer membrane biogen 98.0 0.00015 3.3E-09 68.1 13.5 112 2-113 44-210 (243)
125 KOG0495 HAT repeat protein [RN 98.0 0.00025 5.4E-09 74.5 15.9 174 3-176 597-790 (913)
126 KOG0376 Serine-threonine phosp 97.9 7.3E-06 1.6E-10 83.0 3.9 91 3-114 17-108 (476)
127 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 9.8E-05 2.1E-09 74.3 11.9 100 3-104 182-294 (395)
128 KOG1128 Uncharacterized conser 97.9 5.5E-05 1.2E-09 79.9 10.3 110 4-134 499-612 (777)
129 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.4E-10 53.2 3.2 33 12-44 1-34 (34)
130 PRK14720 transcript cleavage f 97.9 7.8E-05 1.7E-09 81.5 10.9 103 2-107 43-178 (906)
131 KOG1127 TPR repeat-containing 97.9 4.5E-05 9.8E-10 82.7 8.8 57 57-113 575-631 (1238)
132 KOG2003 TPR repeat-containing 97.8 8.6E-05 1.9E-09 75.2 10.0 113 1-113 430-559 (840)
133 PF00515 TPR_1: Tetratricopept 97.8 2.1E-05 4.6E-10 50.7 3.8 34 78-111 1-34 (34)
134 PF07719 TPR_2: Tetratricopept 97.8 4.1E-05 8.9E-10 49.0 4.5 34 78-111 1-34 (34)
135 KOG4162 Predicted calmodulin-b 97.8 0.00019 4.1E-09 76.2 11.5 98 58-176 664-764 (799)
136 PF12895 Apc3: Anaphase-promot 97.8 1.7E-05 3.6E-10 61.6 2.7 75 57-132 2-81 (84)
137 COG4783 Putative Zn-dependent 97.7 0.00017 3.7E-09 73.3 9.7 110 26-135 309-434 (484)
138 PLN03098 LPA1 LOW PSII ACCUMUL 97.7 6.8E-05 1.5E-09 76.0 6.5 68 73-140 70-143 (453)
139 PF13525 YfiO: Outer membrane 97.7 0.0002 4.3E-09 65.1 8.5 112 2-113 17-176 (203)
140 PRK10803 tol-pal system protei 97.6 0.0004 8.7E-09 66.2 10.7 81 61-141 160-249 (263)
141 PF14938 SNAP: Soluble NSF att 97.6 0.00025 5.4E-09 67.6 9.3 107 3-110 48-187 (282)
142 PRK14720 transcript cleavage f 97.6 0.00018 4E-09 78.7 9.3 110 3-114 129-259 (906)
143 COG1729 Uncharacterized protei 97.6 0.00036 7.8E-09 66.5 10.1 89 4-113 155-250 (262)
144 KOG0543 FKBP-type peptidyl-pro 97.6 0.00016 3.5E-09 72.1 8.0 118 28-152 213-334 (397)
145 PF04733 Coatomer_E: Coatomer 97.6 0.00019 4.1E-09 69.3 8.0 110 3-117 115-240 (290)
146 COG4700 Uncharacterized protei 97.6 0.00065 1.4E-08 62.2 10.7 126 5-130 71-214 (251)
147 PF14938 SNAP: Soluble NSF att 97.5 0.00018 4E-09 68.5 6.8 110 4-113 88-231 (282)
148 KOG0495 HAT repeat protein [RN 97.5 0.00083 1.8E-08 70.7 11.9 113 3-115 664-790 (913)
149 PF09976 TPR_21: Tetratricopep 97.5 0.0003 6.6E-09 60.2 7.4 70 2-71 60-145 (145)
150 PF06552 TOM20_plant: Plant sp 97.5 0.00048 1E-08 62.3 8.8 69 5-87 50-123 (186)
151 COG4235 Cytochrome c biogenesi 97.5 0.0003 6.4E-09 67.8 7.9 109 57-192 135-249 (287)
152 KOG1308 Hsp70-interacting prot 97.5 3E-05 6.4E-10 75.9 0.9 88 2-110 126-214 (377)
153 PF04733 Coatomer_E: Coatomer 97.5 0.00025 5.4E-09 68.4 7.3 111 2-113 143-271 (290)
154 KOG1156 N-terminal acetyltrans 97.5 0.00037 8E-09 72.9 8.8 110 4-113 21-144 (700)
155 KOG1127 TPR repeat-containing 97.5 0.00026 5.7E-09 77.0 7.8 138 4-141 472-628 (1238)
156 PRK10153 DNA-binding transcrip 97.5 0.00067 1.5E-08 70.5 10.6 123 18-141 331-485 (517)
157 PRK11906 transcriptional regul 97.4 0.00089 1.9E-08 68.2 10.4 80 63-142 277-371 (458)
158 KOG1130 Predicted G-alpha GTPa 97.4 0.00016 3.5E-09 72.5 5.0 105 3-107 108-264 (639)
159 PF12688 TPR_5: Tetratrico pep 97.4 0.0013 2.8E-08 55.6 9.0 90 26-136 4-102 (120)
160 PF13525 YfiO: Outer membrane 97.3 0.00076 1.7E-08 61.3 8.0 88 26-113 8-125 (203)
161 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00052 1.1E-08 64.1 6.8 56 58-113 113-168 (297)
162 PF13424 TPR_12: Tetratricopep 97.3 0.00038 8.2E-09 52.8 4.8 47 2-48 17-71 (78)
163 KOG4648 Uncharacterized conser 97.3 0.00016 3.6E-09 71.1 3.3 102 28-150 102-206 (536)
164 KOG4340 Uncharacterized conser 97.3 0.0013 2.9E-08 63.9 9.4 53 3-55 23-76 (459)
165 PRK15331 chaperone protein Sic 97.3 0.0018 3.9E-08 57.7 9.4 91 26-137 40-133 (165)
166 PLN03081 pentatricopeptide (PP 97.3 0.0013 2.7E-08 70.2 10.1 131 2-134 403-553 (697)
167 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0059 1.3E-07 50.1 12.0 53 58-110 181-234 (291)
168 PLN03077 Protein ECB2; Provisi 97.3 0.0026 5.7E-08 69.3 12.6 127 2-130 566-712 (857)
169 KOG2376 Signal recognition par 97.3 0.0053 1.1E-07 64.0 13.7 109 2-113 91-259 (652)
170 PRK10866 outer membrane biogen 97.3 0.0038 8.3E-08 58.6 11.9 102 2-103 81-237 (243)
171 PLN03081 pentatricopeptide (PP 97.2 0.0037 7.9E-08 66.7 12.8 169 2-174 372-559 (697)
172 KOG0545 Aryl-hydrocarbon recep 97.2 0.0023 5E-08 60.7 9.8 91 2-113 190-299 (329)
173 PF13428 TPR_14: Tetratricopep 97.2 0.00087 1.9E-08 46.1 5.2 38 28-86 6-43 (44)
174 KOG1130 Predicted G-alpha GTPa 97.2 0.00059 1.3E-08 68.6 5.9 107 3-109 208-346 (639)
175 PF13428 TPR_14: Tetratricopep 97.2 0.00044 9.4E-09 47.6 3.6 37 78-114 1-37 (44)
176 COG0457 NrfG FOG: TPR repeat [ 97.2 0.012 2.6E-07 48.3 12.7 109 2-110 142-268 (291)
177 COG4700 Uncharacterized protei 97.1 0.0071 1.5E-07 55.5 11.9 103 2-105 101-220 (251)
178 PF13181 TPR_8: Tetratricopept 97.1 0.0006 1.3E-08 43.7 3.6 32 79-110 2-33 (34)
179 PLN03077 Protein ECB2; Provisi 97.1 0.0055 1.2E-07 66.9 12.9 146 2-154 536-702 (857)
180 KOG2376 Signal recognition par 97.1 0.0046 9.9E-08 64.5 11.1 109 2-113 24-145 (652)
181 KOG2796 Uncharacterized conser 97.1 0.0026 5.6E-08 61.0 8.6 111 3-113 190-321 (366)
182 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0014 3.1E-08 64.2 6.7 54 57-110 132-185 (390)
183 COG3118 Thioredoxin domain-con 97.0 0.0091 2E-07 57.8 11.7 110 1-111 145-269 (304)
184 PF12968 DUF3856: Domain of Un 97.0 0.01 2.3E-07 50.6 10.7 90 3-106 22-128 (144)
185 PF13512 TPR_18: Tetratricopep 97.0 0.0047 1E-07 53.9 8.8 67 39-114 14-83 (142)
186 COG3071 HemY Uncharacterized e 96.9 0.013 2.9E-07 58.5 12.8 133 2-134 165-386 (400)
187 PF12569 NARP1: NMDA receptor- 96.9 0.0073 1.6E-07 62.9 11.4 105 3-107 207-334 (517)
188 KOG4234 TPR repeat-containing 96.9 0.0042 9.1E-08 57.5 8.4 98 57-154 108-213 (271)
189 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.0082 1.8E-07 60.5 11.1 108 28-135 174-294 (395)
190 KOG3785 Uncharacterized conser 96.9 0.0025 5.3E-08 63.3 7.1 112 2-113 69-220 (557)
191 PLN03218 maturation of RBCL 1; 96.9 0.016 3.4E-07 65.2 14.3 46 3-48 555-604 (1060)
192 COG4105 ComL DNA uptake lipopr 96.9 0.02 4.4E-07 54.4 12.8 113 1-113 45-202 (254)
193 PF00515 TPR_1: Tetratricopept 96.8 0.0026 5.7E-08 40.8 4.4 29 27-76 5-33 (34)
194 PRK04841 transcriptional regul 96.8 0.008 1.7E-07 65.4 10.5 108 2-109 464-604 (903)
195 KOG1156 N-terminal acetyltrans 96.7 0.0052 1.1E-07 64.6 8.1 106 3-108 54-173 (700)
196 PLN03218 maturation of RBCL 1; 96.7 0.022 4.7E-07 64.1 13.4 50 57-106 592-642 (1060)
197 KOG4555 TPR repeat-containing 96.7 0.0049 1.1E-07 53.6 6.4 79 58-136 57-142 (175)
198 smart00028 TPR Tetratricopepti 96.6 0.0031 6.6E-08 37.3 3.7 33 79-111 2-34 (34)
199 PF07719 TPR_2: Tetratricopept 96.5 0.0078 1.7E-07 38.1 5.1 30 27-77 5-34 (34)
200 PF13176 TPR_7: Tetratricopept 96.5 0.0039 8.4E-08 41.2 3.7 29 80-108 1-29 (36)
201 PF09986 DUF2225: Uncharacteri 96.5 0.044 9.6E-07 50.7 11.8 93 4-110 91-197 (214)
202 KOG1586 Protein required for f 96.4 0.015 3.2E-07 55.0 8.4 112 2-113 85-230 (288)
203 PF03704 BTAD: Bacterial trans 96.4 0.042 9.2E-07 46.5 10.6 49 57-105 75-123 (146)
204 PRK04841 transcriptional regul 96.4 0.014 3E-07 63.5 9.3 108 2-109 503-643 (903)
205 PF13174 TPR_6: Tetratricopept 96.2 0.0058 1.2E-07 38.4 3.3 33 79-111 1-33 (33)
206 COG4785 NlpI Lipoprotein NlpI, 96.2 0.016 3.5E-07 54.3 7.5 111 28-140 49-164 (297)
207 COG1729 Uncharacterized protei 96.2 0.024 5.2E-07 54.2 8.7 91 26-137 144-243 (262)
208 COG3898 Uncharacterized membra 96.1 0.065 1.4E-06 54.0 11.7 110 2-111 166-296 (531)
209 KOG0545 Aryl-hydrocarbon recep 96.1 0.022 4.8E-07 54.2 7.9 105 27-145 182-300 (329)
210 COG3071 HemY Uncharacterized e 96.1 0.05 1.1E-06 54.5 10.8 80 5-106 309-389 (400)
211 COG4976 Predicted methyltransf 96.1 0.0095 2.1E-07 56.1 5.2 57 57-113 8-64 (287)
212 PF10300 DUF3808: Protein of u 96.1 0.063 1.4E-06 55.3 11.7 100 4-104 247-373 (468)
213 PF04184 ST7: ST7 protein; In 95.8 0.042 9.1E-07 56.7 8.9 100 3-104 181-321 (539)
214 KOG4642 Chaperone-dependent E3 95.8 0.01 2.3E-07 56.1 4.1 79 57-135 23-104 (284)
215 KOG4507 Uncharacterized conser 95.8 0.022 4.7E-07 59.8 6.7 95 3-118 620-716 (886)
216 KOG3824 Huntingtin interacting 95.7 0.024 5.3E-07 55.5 6.4 61 57-117 129-189 (472)
217 KOG2610 Uncharacterized conser 95.6 0.085 1.8E-06 52.4 9.9 102 3-104 116-235 (491)
218 KOG3785 Uncharacterized conser 95.6 0.034 7.3E-07 55.5 7.0 139 3-141 35-217 (557)
219 PF13374 TPR_10: Tetratricopep 95.2 0.032 7E-07 36.6 4.0 31 78-108 2-32 (42)
220 PF13181 TPR_8: Tetratricopept 95.2 0.042 9.2E-07 34.8 4.3 22 27-48 5-26 (34)
221 PF03704 BTAD: Bacterial trans 95.1 0.12 2.7E-06 43.6 8.1 47 2-48 74-121 (146)
222 KOG1310 WD40 repeat protein [G 95.0 0.06 1.3E-06 56.0 6.8 91 5-113 389-480 (758)
223 PF14561 TPR_20: Tetratricopep 94.7 0.14 3.1E-06 41.0 7.1 51 63-113 7-57 (90)
224 KOG1915 Cell cycle control pro 94.6 0.21 4.6E-06 51.5 9.7 84 2-86 449-548 (677)
225 KOG1915 Cell cycle control pro 94.6 0.22 4.7E-06 51.5 9.6 106 3-108 379-501 (677)
226 KOG3081 Vesicle coat complex C 94.6 0.29 6.2E-06 47.1 9.9 110 3-117 121-246 (299)
227 COG4105 ComL DNA uptake lipopr 94.5 0.19 4.2E-06 47.8 8.5 67 26-113 37-106 (254)
228 COG2976 Uncharacterized protei 94.4 0.42 9.1E-06 44.0 10.1 82 28-111 94-192 (207)
229 PRK10941 hypothetical protein; 94.2 0.24 5.2E-06 47.6 8.5 65 28-113 186-250 (269)
230 PF05843 Suf: Suppressor of fo 94.1 0.44 9.6E-06 45.5 10.2 87 6-112 17-104 (280)
231 KOG1308 Hsp70-interacting prot 94.1 0.015 3.3E-07 57.3 0.1 57 57-113 127-183 (377)
232 PF13176 TPR_7: Tetratricopept 94.1 0.08 1.7E-06 34.8 3.6 21 28-48 4-24 (36)
233 KOG1941 Acetylcholine receptor 93.8 0.1 2.2E-06 52.3 5.3 107 4-110 136-278 (518)
234 KOG1585 Protein required for f 93.8 0.4 8.7E-06 45.8 9.1 100 4-103 45-175 (308)
235 PF14853 Fis1_TPR_C: Fis1 C-te 93.8 0.11 2.4E-06 37.8 4.2 35 79-113 2-36 (53)
236 KOG2053 Mitochondrial inherita 93.7 0.34 7.4E-06 53.0 9.5 110 3-113 22-145 (932)
237 KOG1586 Protein required for f 93.6 0.34 7.3E-06 46.0 8.2 103 4-108 28-144 (288)
238 KOG3824 Huntingtin interacting 93.3 0.14 3.1E-06 50.3 5.3 63 3-86 129-192 (472)
239 PF13174 TPR_6: Tetratricopept 93.1 0.068 1.5E-06 33.3 2.0 29 26-54 3-31 (33)
240 KOG3081 Vesicle coat complex C 93.1 0.74 1.6E-05 44.4 9.7 109 4-113 151-277 (299)
241 KOG4340 Uncharacterized conser 92.9 0.66 1.4E-05 45.7 9.2 90 2-101 156-264 (459)
242 KOG0376 Serine-threonine phosp 92.6 0.1 2.2E-06 53.5 3.4 84 58-141 18-104 (476)
243 COG2976 Uncharacterized protei 92.6 0.42 9E-06 44.1 7.0 76 3-78 102-193 (207)
244 PF14561 TPR_20: Tetratricopep 92.1 1.5 3.3E-05 35.0 9.0 45 9-53 7-52 (90)
245 KOG2047 mRNA splicing factor [ 92.0 1.2 2.7E-05 47.6 10.3 143 3-145 400-586 (835)
246 PF10373 EST1_DNA_bind: Est1 D 91.8 0.35 7.5E-06 44.9 5.7 46 63-108 1-46 (278)
247 PRK10941 hypothetical protein; 91.7 0.97 2.1E-05 43.4 8.8 62 1-83 192-254 (269)
248 KOG1070 rRNA processing protei 91.4 1.8 4E-05 49.8 11.5 85 57-141 1543-1632(1710)
249 PF04184 ST7: ST7 protein; In 91.4 1.1 2.4E-05 46.6 9.1 102 3-113 272-381 (539)
250 PF10300 DUF3808: Protein of u 91.1 0.45 9.9E-06 49.0 6.2 53 3-55 280-337 (468)
251 COG0790 FOG: TPR repeat, SEL1 91.1 3.6 7.8E-05 38.7 11.9 102 4-109 91-222 (292)
252 PF05843 Suf: Suppressor of fo 91.0 1.4 3E-05 42.2 9.0 88 4-112 50-141 (280)
253 smart00028 TPR Tetratricopepti 90.9 0.48 1E-05 27.3 3.9 22 27-48 5-26 (34)
254 PF13374 TPR_10: Tetratricopep 90.7 0.33 7.1E-06 31.6 3.2 21 28-48 7-27 (42)
255 PF10373 EST1_DNA_bind: Est1 D 90.6 0.96 2.1E-05 42.0 7.4 61 9-90 1-62 (278)
256 KOG1941 Acetylcholine receptor 90.6 0.88 1.9E-05 45.8 7.3 85 28-112 127-240 (518)
257 PF02259 FAT: FAT domain; Int 90.5 2.4 5.2E-05 40.4 10.3 46 3-48 159-209 (352)
258 KOG3617 WD40 and TPR repeat-co 90.4 1.4 2.9E-05 48.5 9.0 99 3-106 871-995 (1416)
259 KOG3364 Membrane protein invol 90.1 2.3 5E-05 37.2 8.6 76 20-113 29-106 (149)
260 KOG0551 Hsp90 co-chaperone CNS 90.0 1.2 2.6E-05 44.3 7.6 54 60-113 97-154 (390)
261 PF07721 TPR_4: Tetratricopept 89.7 0.42 9.1E-06 29.2 2.8 24 79-102 2-25 (26)
262 KOG2396 HAT (Half-A-TPR) repea 89.3 2.9 6.2E-05 43.6 10.1 83 10-113 91-175 (568)
263 KOG1070 rRNA processing protei 89.3 2.7 5.8E-05 48.5 10.6 134 6-139 1513-1664(1710)
264 PF13281 DUF4071: Domain of un 89.0 2.7 5.9E-05 42.3 9.6 100 5-113 241-340 (374)
265 PF04781 DUF627: Protein of un 88.9 2.7 5.8E-05 35.3 7.9 95 2-107 8-107 (111)
266 PF07720 TPR_3: Tetratricopept 88.7 1 2.3E-05 30.0 4.4 34 78-111 1-36 (36)
267 KOG2471 TPR repeat-containing 88.6 2.2 4.8E-05 44.4 8.7 99 17-115 233-372 (696)
268 PF10516 SHNi-TPR: SHNi-TPR; 88.5 0.53 1.2E-05 31.9 2.9 30 79-108 2-31 (38)
269 COG0790 FOG: TPR repeat, SEL1 88.0 9.5 0.00021 35.8 12.2 102 4-108 127-267 (292)
270 PF09613 HrpB1_HrpK: Bacterial 87.6 5.3 0.00011 35.6 9.4 51 62-112 28-78 (160)
271 PF12862 Apc5: Anaphase-promot 87.4 1.7 3.7E-05 34.5 5.8 36 78-113 41-76 (94)
272 KOG4507 Uncharacterized conser 87.2 0.6 1.3E-05 49.4 3.7 103 11-113 200-318 (886)
273 PF14853 Fis1_TPR_C: Fis1 C-te 87.1 3 6.5E-05 30.3 6.3 40 26-86 4-43 (53)
274 COG4976 Predicted methyltransf 86.9 1.2 2.5E-05 42.4 5.1 54 2-55 7-61 (287)
275 KOG2610 Uncharacterized conser 86.4 2.1 4.5E-05 42.8 6.8 85 29-113 109-210 (491)
276 PRK13184 pknD serine/threonine 85.9 2 4.4E-05 48.0 7.2 95 4-113 489-587 (932)
277 COG4649 Uncharacterized protei 85.3 13 0.00029 34.1 10.8 104 3-106 71-195 (221)
278 KOG2300 Uncharacterized conser 84.7 8 0.00017 40.4 10.2 111 3-113 380-520 (629)
279 KOG1585 Protein required for f 84.6 5 0.00011 38.6 8.1 106 6-111 9-143 (308)
280 COG3914 Spy Predicted O-linked 84.2 5.1 0.00011 42.5 8.7 109 9-117 50-181 (620)
281 KOG1550 Extracellular protein 84.0 14 0.0003 38.9 12.1 104 3-109 262-395 (552)
282 PF08631 SPO22: Meiosis protei 83.8 20 0.00043 34.1 12.2 47 2-48 5-61 (278)
283 PF10602 RPN7: 26S proteasome 82.7 6 0.00013 35.4 7.6 78 28-105 41-140 (177)
284 cd02682 MIT_AAA_Arch MIT: doma 82.5 6.2 0.00013 30.8 6.6 47 28-88 11-57 (75)
285 PF08424 NRDE-2: NRDE-2, neces 81.8 15 0.00033 35.7 10.8 108 6-113 47-189 (321)
286 KOG2796 Uncharacterized conser 81.4 5.1 0.00011 39.0 6.9 116 26-141 180-318 (366)
287 KOG2053 Mitochondrial inherita 81.2 7.3 0.00016 43.1 8.8 54 2-55 55-109 (932)
288 KOG2047 mRNA splicing factor [ 80.8 18 0.00039 39.1 11.3 103 4-106 491-614 (835)
289 PF04910 Tcf25: Transcriptiona 80.5 24 0.00052 35.2 11.8 95 5-113 9-139 (360)
290 KOG4814 Uncharacterized conser 80.4 7.2 0.00016 41.9 8.2 83 4-107 368-457 (872)
291 PF12862 Apc5: Anaphase-promot 80.4 6.1 0.00013 31.3 6.2 47 2-48 10-66 (94)
292 PF15015 NYD-SP12_N: Spermatog 79.9 6.3 0.00014 40.5 7.3 82 2-104 188-288 (569)
293 PF09613 HrpB1_HrpK: Bacterial 79.8 8.4 0.00018 34.3 7.4 68 28-95 15-95 (160)
294 PF07721 TPR_4: Tetratricopept 79.7 2.5 5.5E-05 25.6 2.9 22 27-48 5-26 (26)
295 COG3898 Uncharacterized membra 79.4 28 0.0006 35.8 11.6 100 4-104 98-214 (531)
296 PF10579 Rapsyn_N: Rapsyn N-te 79.3 7.5 0.00016 30.8 6.1 47 58-104 20-69 (80)
297 PRK15180 Vi polysaccharide bio 79.3 7.2 0.00016 40.8 7.6 109 3-111 302-424 (831)
298 cd02683 MIT_1 MIT: domain cont 79.1 18 0.00039 28.1 8.3 36 30-79 13-48 (77)
299 KOG3807 Predicted membrane pro 77.6 13 0.00029 37.3 8.7 112 28-142 280-395 (556)
300 PF10579 Rapsyn_N: Rapsyn N-te 77.6 6 0.00013 31.3 5.1 46 3-48 19-68 (80)
301 KOG0546 HSP90 co-chaperone CPR 77.4 1.2 2.7E-05 44.3 1.5 58 58-115 289-346 (372)
302 COG2912 Uncharacterized conser 76.8 7.1 0.00015 37.7 6.4 56 58-113 195-250 (269)
303 PF08424 NRDE-2: NRDE-2, neces 76.1 42 0.00092 32.7 11.9 90 10-113 5-100 (321)
304 PF04053 Coatomer_WDAD: Coatom 75.5 3.1 6.7E-05 42.7 3.9 95 4-104 275-373 (443)
305 PF07079 DUF1347: Protein of u 73.8 8.7 0.00019 39.8 6.5 66 3-69 475-541 (549)
306 PF13281 DUF4071: Domain of un 72.9 26 0.00056 35.4 9.6 54 58-111 196-259 (374)
307 KOG3617 WD40 and TPR repeat-co 72.3 5.7 0.00012 44.0 4.9 90 11-104 790-884 (1416)
308 PF10255 Paf67: RNA polymerase 71.1 6.6 0.00014 40.0 5.0 67 28-107 127-193 (404)
309 COG3914 Spy Predicted O-linked 71.0 15 0.00032 39.1 7.5 86 57-142 80-175 (620)
310 KOG2471 TPR repeat-containing 71.0 15 0.00032 38.7 7.3 67 2-89 295-380 (696)
311 PF11846 DUF3366: Domain of un 70.1 17 0.00037 32.4 6.9 51 59-110 126-176 (193)
312 PF09986 DUF2225: Uncharacteri 70.1 12 0.00026 34.6 6.1 44 6-49 141-191 (214)
313 COG2912 Uncharacterized conser 70.0 15 0.00032 35.5 6.8 56 28-83 186-254 (269)
314 TIGR02561 HrpB1_HrpK type III 69.9 32 0.0007 30.5 8.3 38 73-110 39-76 (153)
315 PF07079 DUF1347: Protein of u 69.5 58 0.0012 34.0 11.2 96 6-103 396-520 (549)
316 COG3629 DnrI DNA-binding trans 69.5 13 0.00028 36.1 6.3 51 57-107 166-216 (280)
317 PF04190 DUF410: Protein of un 69.0 19 0.00042 34.1 7.5 102 1-103 1-115 (260)
318 cd02678 MIT_VPS4 MIT: domain c 68.2 20 0.00043 27.4 6.1 34 31-78 14-47 (75)
319 smart00386 HAT HAT (Half-A-TPR 68.0 17 0.00036 21.7 4.7 30 58-87 1-30 (33)
320 KOG0529 Protein geranylgeranyl 67.2 64 0.0014 33.0 10.9 97 7-113 46-146 (421)
321 COG3629 DnrI DNA-binding trans 67.0 21 0.00046 34.6 7.2 47 3-49 166-213 (280)
322 KOG1550 Extracellular protein 65.8 62 0.0013 34.1 11.1 99 5-106 308-425 (552)
323 smart00745 MIT Microtubule Int 65.4 46 0.001 25.1 7.6 33 30-76 15-47 (77)
324 PF08631 SPO22: Meiosis protei 65.2 16 0.00034 34.7 6.1 50 58-107 7-65 (278)
325 TIGR02561 HrpB1_HrpK type III 65.1 20 0.00043 31.8 6.1 61 34-94 21-94 (153)
326 smart00386 HAT HAT (Half-A-TPR 65.0 16 0.00034 21.8 4.1 24 4-27 1-24 (33)
327 PF02259 FAT: FAT domain; Int 64.9 80 0.0017 29.9 10.9 91 23-113 145-293 (352)
328 cd02681 MIT_calpain7_1 MIT: do 63.3 47 0.001 25.8 7.3 32 29-74 12-43 (76)
329 PHA02537 M terminase endonucle 62.3 31 0.00067 32.5 7.2 106 2-113 95-213 (230)
330 PF04781 DUF627: Protein of un 61.9 14 0.00031 30.9 4.4 56 58-113 10-79 (111)
331 KOG1258 mRNA processing protei 61.2 2.1E+02 0.0046 30.6 13.7 98 2-99 309-421 (577)
332 PF12854 PPR_1: PPR repeat 61.1 19 0.00041 23.1 4.1 27 77-103 6-32 (34)
333 KOG3616 Selective LIM binding 60.7 20 0.00043 39.6 6.2 97 2-105 777-909 (1636)
334 PF12854 PPR_1: PPR repeat 60.7 18 0.00038 23.3 3.8 29 20-48 4-32 (34)
335 PF12968 DUF3856: Domain of Un 60.6 36 0.00078 29.4 6.6 50 58-107 23-84 (144)
336 TIGR03504 FimV_Cterm FimV C-te 59.8 15 0.00032 25.6 3.5 26 81-106 2-27 (44)
337 COG3118 Thioredoxin domain-con 57.7 24 0.00053 34.6 5.8 47 57-103 147-193 (304)
338 cd02684 MIT_2 MIT: domain cont 57.6 37 0.0008 26.2 5.8 44 6-77 3-46 (75)
339 cd02656 MIT MIT: domain contai 56.4 34 0.00074 25.8 5.4 33 30-76 13-45 (75)
340 KOG2041 WD40 repeat protein [G 56.1 21 0.00046 39.1 5.4 78 26-104 798-878 (1189)
341 PF09670 Cas_Cas02710: CRISPR- 54.7 63 0.0014 32.4 8.5 50 2-51 143-197 (379)
342 PF04212 MIT: MIT (microtubule 54.0 44 0.00095 24.8 5.6 37 28-78 10-46 (69)
343 KOG1920 IkappaB kinase complex 53.5 26 0.00056 40.2 5.9 70 28-105 944-1026(1265)
344 KOG3364 Membrane protein invol 53.3 57 0.0012 28.7 6.8 57 5-82 50-109 (149)
345 PF11207 DUF2989: Protein of u 51.9 89 0.0019 29.0 8.2 42 57-98 153-198 (203)
346 KOG0890 Protein kinase of the 51.6 18 0.00039 44.0 4.5 108 2-109 1395-1514(2382)
347 COG2909 MalT ATP-dependent tra 50.7 67 0.0014 35.9 8.3 84 28-111 420-530 (894)
348 KOG1839 Uncharacterized protei 50.7 44 0.00095 38.6 7.1 109 2-110 944-1089(1236)
349 PF04190 DUF410: Protein of un 50.6 2.1E+02 0.0045 27.1 10.9 76 23-107 89-170 (260)
350 COG5191 Uncharacterized conser 50.3 21 0.00045 35.6 4.0 68 14-81 97-179 (435)
351 cd02680 MIT_calpain7_2 MIT: do 49.4 21 0.00046 27.8 3.2 11 36-46 19-29 (75)
352 cd02679 MIT_spastin MIT: domai 47.8 29 0.00063 27.3 3.8 17 32-48 17-33 (79)
353 PF01535 PPR: PPR repeat; Int 47.6 28 0.0006 20.6 3.1 27 80-106 2-28 (31)
354 cd02677 MIT_SNX15 MIT: domain 47.3 43 0.00093 25.9 4.7 43 6-76 3-45 (75)
355 PF07720 TPR_3: Tetratricopept 47.3 21 0.00046 23.7 2.6 22 2-23 13-36 (36)
356 cd02677 MIT_SNX15 MIT: domain 47.0 22 0.00047 27.6 3.0 32 61-107 4-35 (75)
357 KOG3807 Predicted membrane pro 46.2 1.9E+02 0.0041 29.4 9.9 94 4-109 198-306 (556)
358 KOG4014 Uncharacterized conser 45.0 1.3E+02 0.0029 28.0 8.1 53 37-91 87-157 (248)
359 COG4455 ImpE Protein of avirul 44.7 51 0.0011 31.4 5.6 56 58-113 15-70 (273)
360 COG3947 Response regulator con 44.4 40 0.00086 33.3 4.9 46 3-48 292-338 (361)
361 PF04053 Coatomer_WDAD: Coatom 44.2 2.1E+02 0.0045 29.5 10.4 28 22-49 345-373 (443)
362 KOG0985 Vesicle coat protein c 44.1 52 0.0011 37.6 6.3 72 28-104 1053-1130(1666)
363 TIGR00756 PPR pentatricopeptid 44.0 44 0.00094 20.0 3.6 27 80-106 2-28 (35)
364 COG2909 MalT ATP-dependent tra 44.0 69 0.0015 35.8 7.2 47 2-48 470-522 (894)
365 cd02682 MIT_AAA_Arch MIT: doma 44.0 38 0.00083 26.4 3.9 24 83-106 11-34 (75)
366 KOG1464 COP9 signalosome, subu 44.0 75 0.0016 31.3 6.7 101 2-102 39-169 (440)
367 COG5159 RPN6 26S proteasome re 43.6 1.9E+02 0.0042 28.8 9.4 102 3-104 16-151 (421)
368 PF05053 Menin: Menin; InterP 43.5 27 0.00059 37.1 3.9 45 61-105 296-345 (618)
369 PF10345 Cohesin_load: Cohesin 42.0 1.7E+02 0.0037 31.0 9.8 27 77-103 403-429 (608)
370 KOG3616 Selective LIM binding 41.7 49 0.0011 36.6 5.5 72 28-101 770-847 (1636)
371 PRK11619 lytic murein transgly 41.3 3.5E+02 0.0075 29.3 12.0 102 5-106 256-374 (644)
372 KOG4814 Uncharacterized conser 41.1 64 0.0014 35.1 6.2 57 57-113 367-429 (872)
373 PF11846 DUF3366: Domain of un 40.8 69 0.0015 28.4 5.7 48 6-53 127-174 (193)
374 PF08238 Sel1: Sel1 repeat; I 40.6 56 0.0012 20.6 3.9 30 78-107 1-37 (39)
375 KOG2396 HAT (Half-A-TPR) repea 40.4 83 0.0018 33.2 6.7 57 5-81 120-177 (568)
376 PF13041 PPR_2: PPR repeat fam 40.3 58 0.0013 22.1 4.1 30 78-107 3-32 (50)
377 COG4941 Predicted RNA polymera 40.2 1.1E+02 0.0025 30.8 7.4 108 5-113 271-400 (415)
378 PF15469 Sec5: Exocyst complex 40.0 65 0.0014 28.5 5.4 17 34-50 97-113 (182)
379 TIGR03504 FimV_Cterm FimV C-te 39.5 43 0.00094 23.3 3.3 24 27-50 3-26 (44)
380 COG3947 Response regulator con 38.9 58 0.0013 32.2 5.1 30 84-113 285-314 (361)
381 PF04212 MIT: MIT (microtubule 38.2 59 0.0013 24.1 4.1 23 84-106 11-33 (69)
382 cd02656 MIT MIT: domain contai 37.9 51 0.0011 24.8 3.8 19 88-106 16-34 (75)
383 smart00671 SEL1 Sel1-like repe 37.8 56 0.0012 20.1 3.4 29 79-107 2-34 (36)
384 KOG0276 Vesicle coat complex C 37.2 88 0.0019 33.9 6.4 75 28-107 619-695 (794)
385 PF10952 DUF2753: Protein of u 35.9 1.1E+02 0.0024 26.5 5.8 48 1-48 12-75 (140)
386 PF11817 Foie-gras_1: Foie gra 35.8 3.4E+02 0.0073 25.2 9.8 78 7-103 155-243 (247)
387 PF04910 Tcf25: Transcriptiona 35.3 94 0.002 31.0 6.2 37 69-105 31-67 (360)
388 PF10602 RPN7: 26S proteasome 35.2 1.5E+02 0.0033 26.3 7.0 51 57-107 49-102 (177)
389 KOG2041 WD40 repeat protein [G 34.6 89 0.0019 34.5 6.1 82 21-104 849-936 (1189)
390 PF13041 PPR_2: PPR repeat fam 32.7 96 0.0021 21.0 4.2 21 28-48 8-28 (50)
391 KOG2908 26S proteasome regulat 32.6 3.4E+02 0.0074 27.4 9.3 91 3-107 88-186 (380)
392 TIGR02710 CRISPR-associated pr 32.3 3.3E+02 0.0072 27.6 9.5 47 2-48 142-196 (380)
393 KOG2300 Uncharacterized conser 31.8 1.7E+02 0.0037 31.0 7.3 44 5-48 24-72 (629)
394 PF13812 PPR_3: Pentatricopept 31.3 1E+02 0.0023 18.5 3.9 27 80-106 3-29 (34)
395 cd02681 MIT_calpain7_1 MIT: do 31.1 80 0.0017 24.5 3.9 20 88-107 16-35 (76)
396 cd02683 MIT_1 MIT: domain cont 30.7 75 0.0016 24.6 3.7 20 87-106 15-34 (77)
397 KOG0530 Protein farnesyltransf 30.3 4.1E+02 0.0088 26.1 9.2 105 6-110 59-179 (318)
398 PF02064 MAS20: MAS20 protein 29.7 79 0.0017 26.9 3.9 32 82-113 67-98 (121)
399 KOG1464 COP9 signalosome, subu 28.6 1.5E+02 0.0032 29.3 6.0 48 59-106 42-93 (440)
400 PF12753 Nro1: Nuclear pore co 28.5 67 0.0015 32.8 3.8 35 58-94 332-366 (404)
401 cd02680 MIT_calpain7_2 MIT: do 28.5 47 0.001 25.9 2.2 17 3-19 19-35 (75)
402 PF09797 NatB_MDM20: N-acetylt 28.2 1.4E+02 0.0031 29.3 6.2 45 59-103 198-242 (365)
403 PRK15490 Vi polysaccharide bio 27.8 2.1E+02 0.0045 30.8 7.5 69 32-102 17-98 (578)
404 KOG0686 COP9 signalosome, subu 27.6 1.4E+02 0.003 30.9 5.8 78 28-105 155-256 (466)
405 KOG1538 Uncharacterized conser 27.0 1.4E+02 0.003 32.8 5.9 76 28-106 752-832 (1081)
406 COG5191 Uncharacterized conser 26.7 65 0.0014 32.2 3.3 52 4-55 121-177 (435)
407 PF14863 Alkyl_sulf_dimr: Alky 26.6 1.6E+02 0.0034 25.6 5.3 37 58-94 84-120 (141)
408 KOG1914 mRNA cleavage and poly 26.5 3.5E+02 0.0077 29.1 8.7 86 14-100 10-109 (656)
409 PF10345 Cohesin_load: Cohesin 26.1 6.8E+02 0.015 26.5 11.1 100 4-104 74-205 (608)
410 KOG4151 Myosin assembly protei 25.4 97 0.0021 34.1 4.6 57 57-113 106-162 (748)
411 PF10255 Paf67: RNA polymerase 25.2 74 0.0016 32.5 3.5 73 3-76 135-231 (404)
412 KOG0739 AAA+-type ATPase [Post 25.1 3.7E+02 0.008 27.1 8.1 69 6-102 7-76 (439)
413 KOG1463 26S proteasome regulat 24.9 2.4E+02 0.0053 28.5 6.9 103 3-105 17-155 (411)
414 smart00745 MIT Microtubule Int 24.7 1.4E+02 0.0029 22.4 4.2 21 86-106 16-36 (77)
415 smart00299 CLH Clathrin heavy 24.3 4E+02 0.0086 21.8 7.5 28 58-90 110-137 (140)
416 PF09670 Cas_Cas02710: CRISPR- 24.0 3.6E+02 0.0077 27.1 8.1 50 58-107 145-198 (379)
417 cd02679 MIT_spastin MIT: domai 23.6 1.2E+02 0.0026 23.8 3.7 19 88-106 18-36 (79)
418 KOG2581 26S proteasome regulat 23.3 86 0.0019 32.3 3.5 56 58-113 223-282 (493)
419 COG4455 ImpE Protein of avirul 23.2 6.3E+02 0.014 24.3 8.9 47 2-48 13-60 (273)
420 KOG1258 mRNA processing protei 22.7 7.6E+02 0.016 26.6 10.4 110 4-113 345-476 (577)
421 PF08311 Mad3_BUB1_I: Mad3/BUB 22.3 3.6E+02 0.0078 22.5 6.7 44 62-105 81-126 (126)
422 PF09205 DUF1955: Domain of un 22.2 5.6E+02 0.012 22.7 9.3 50 57-106 99-148 (161)
423 smart00299 CLH Clathrin heavy 22.1 2.9E+02 0.0062 22.7 6.1 87 3-103 20-107 (140)
424 COG3014 Uncharacterized protei 21.6 4.2E+02 0.0092 27.0 7.8 99 9-108 40-155 (449)
425 KOG0890 Protein kinase of the 21.4 4E+02 0.0087 33.4 8.8 106 3-110 1683-1836(2382)
426 cd02678 MIT_VPS4 MIT: domain c 20.1 1.7E+02 0.0037 22.1 3.9 21 86-106 14-34 (75)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=2.3e-19 Score=182.73 Aligned_cols=196 Identities=16% Similarity=0.159 Sum_probs=165.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~y 67 (338)
.+|+.-+||.+|++|++++|.+.++| |||++|...+.|++|+.+|.+ ..|.++.+ +|..+-||..|
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 47899999999999999999999988 999999999999999999999 45666553 88999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
++||+++|+++++|.|||.++.+.|+..||++||.++|.+.|.++. .++.+....+.-+.|...+..++.+.|....
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa 389 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA 389 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence 9999999999999999999999999999999999999999999998 4445566777777888888899988887443
Q ss_pred hhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCCCC
Q 019586 145 KHRSVK-----------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPP 203 (338)
Q Consensus 145 K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~~p 203 (338)
...++. .+.-+..+|...|.|.++|.|.|+ ++...+++..++.-+-.++++ .|
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn----t~ke~g~v~~A~q~y~rAI~~--nP 453 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN----TYKEMGDVSAAIQCYTRAIQI--NP 453 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch----HHHHhhhHHHHHHHHHHHHhc--Cc
Confidence 322222 444556789999999999999999 555666666666667777777 55
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=2.8e-17 Score=167.62 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~y 67 (338)
.+|..+-||..|++||+++|++.++| |||+++...|+..||..+|.+ +.|.++++ +|.+++|...|
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 36888899999999999999999977 999999999999999999988 56777774 67889999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
++|+++.|+++.++.|||.+|.++|++++|+.||+.++.++|..++.+ +......++-+.|...+..++.+||-...
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999999999999999999999999999999887744 33355667777788888888888886554
Q ss_pred hhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 145 KHRSVK-----------KLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 145 K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
.+.++. .+..+..+++..|+|.++|.|+.-..
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 333333 45566778888999999999987765
No 3
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.6e-14 Score=145.72 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=148.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
|..|+|+.|+.+|..||.++|.++..| |...+|.++|+| ++|+..-.++++++|+|+.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~---------------------~~al~da~k~~~l~p~w~k 71 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY---------------------EKALKDATKTRRLNPDWAK 71 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH---------------------HHHHHHHHHHHhcCCchhh
Confidence 467999999999999999999999988 999999999999 6677777889999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHH
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAI 159 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai 159 (338)
+|..+|.++..+|+|++|+..|.+.|+.+|.+..++..+.... .. ..-....+-.|...+++...+.+...+...
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~----~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~ 146 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LE----DYAADQLFTKPYFHEKLANLPLTNYSLSDP 146 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hH----HHHhhhhccCcHHHHHhhcChhhhhhhccH
Confidence 9999999999999999999999999999999988655442211 11 111156677899999999999999999999
Q ss_pred HHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc-ccccCC
Q 019586 160 KTQENFADENINANIVVNQTVLAQQRGVQQLAP-FGNSWN 198 (338)
Q Consensus 160 ~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~-~~~~~~ 198 (338)
.+.........|++.+. ..+.|||+++++++ ++++++
T Consensus 147 ~~~~~l~~~~~~p~~l~--~~l~d~r~m~a~~~l~~~~~~ 184 (539)
T KOG0548|consen 147 AYVKILEIIQKNPTSLK--LYLNDPRLMKADGQLKGVDEL 184 (539)
T ss_pred HHHHHHHHhhcCcHhhh--cccccHHHHHHHHHHhcCccc
Confidence 99999999999999988 67779999999999 887766
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.55 E-value=7.6e-14 Score=145.62 Aligned_cols=194 Identities=11% Similarity=0.066 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
.+|++++|+..|+++++++|++...| ++|.++..+|++++|+..|+++ .|.+++ ..|++++|+.+|
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 36888888888888888888888766 8888888888888888888883 444443 278888999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
+++++++|++..+|.++|.++..+|++++|+..|+++++..|.++. .++.+....++.+.|...+..++.++|....
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 9999888888888888888888899999999999888888888776 3344456777788888888888887775321
Q ss_pred hhhh------------------hhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 145 KHRS------------------VKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 145 K~~~------------------~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
.... -.....+.+++...|++..++.++|. .+++..+..+++..+...+.+
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~----~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQ----LLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH----HHHHccCHHHHHHHHHHHHHH
Confidence 1100 00111233455556677777777777 445566666665555554444
No 5
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=5.5e-13 Score=127.74 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=141.8
Q ss_pred CCCHHHHHHHHHHHHHh---CCCC-HHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHH
Q 019586 3 QNNYIEAEDAYRRALSI---APDN-NKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHL 64 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel---dPd~-a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi 64 (338)
.+..+.++..+.++|.. +|.. +.+| ++|.+|...|++++|+..|+++ .|+++. ..|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35678899999999974 4433 4445 9999999999999999999994 555544 288999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccC-CCh
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDV-NPI 141 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~-~P~ 141 (338)
..|+++++++|++..+|.++|.++...|++++|+.+|+++++++|.++. ++..+....++...|.+.+...+.. +|.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 9999999999999999999999999999999999999999999999873 1111223445566677766554432 333
Q ss_pred hhhh---hhhhhhhcc----------hHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCC
Q 019586 142 VLSK---HRSVKKLFP----------TANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNID 200 (338)
Q Consensus 142 ~~~K---~~~~~kl~~----------~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~ 200 (338)
...- ...+.++.. ...++...++..++|+++|. .+....+..+++..+...+.++
T Consensus 199 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~----~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 199 QWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAK----YYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHhC
Confidence 2110 001111110 12234667889999999999 5567777888888777777664
No 6
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.2e-13 Score=131.50 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
|+.++|++|+..|.+||+++|.++.+| |++.+|.++|.| +.|++.++.||.++|.+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~---------------------~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY---------------------EDAVKDCESALSIDPHYSK 150 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch---------------------HHHHHHHHHHHhcChHHHH
Confidence 456899999999999999999999977 999999999999 6778888889999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 117 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~ 117 (338)
+|..||.+|+.+|++.+|+..|+++|.++|++......
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 99999999999999999999999999999999864443
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=1.2e-12 Score=113.04 Aligned_cols=105 Identities=12% Similarity=0.037 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCC
Q 019586 9 AEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~P 75 (338)
-+.+|+++++++|++ .+++|.++...|++++|+.+|+++. |.++. ..|++++|+.+|+++++++|
T Consensus 12 ~~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 12 PEDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 357899999999985 5588999999999999999999944 44333 27899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+++.+|+++|.++..+|++++|+.+|+++++++|+++..+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999998733
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.42 E-value=7.1e-12 Score=130.86 Aligned_cols=169 Identities=11% Similarity=0.089 Sum_probs=134.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y 67 (338)
..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++...+|+ .+|++++|+..|
T Consensus 377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46899999999999999999999977 9999999999999999999995554444 278999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch----------hhhcCccHHHHHhhhhccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT----------NAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l----------~~~~~~~~~A~e~~~~al~ 137 (338)
++++++.|+.+.+|+.+|.++..+|++++|+.+|+++++++|.+......+ ....++.+.|...+..++.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999865432221 1124666778888888888
Q ss_pred CCChhhh----hhhhhhhhcchHHHHHHhHhHHHHhh
Q 019586 138 VNPIVLS----KHRSVKKLFPTANAIKTQENFADENI 170 (338)
Q Consensus 138 ~~P~~~~----K~~~~~kl~~~~~ai~~~~~~~e~y~ 170 (338)
++|.... ..........+..|+....+..+...
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 8887543 23333345555556665554444433
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=1.3e-12 Score=143.36 Aligned_cols=284 Identities=10% Similarity=-0.001 Sum_probs=162.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CC---CCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD----------GP---RGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~l---g~~deAi~~ye 68 (338)
+.|++++|+.+|++++...|.....+++|.++...|++++|+.+|+++....++ .. |++++|+.+|+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356777777777777666666555557777777777777777777774333332 12 77888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
++++++|+ +.+|.++|.++.++|++++|+.+|+++++++|+++..+.. +....++.+.+.+.+..
T Consensus 601 ~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~----------- 668 (987)
T PRK09782 601 RSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER----------- 668 (987)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------
Confidence 88888876 7777778888888888888888888888888877763322 23344555555554444
Q ss_pred hhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCCCCcccccCCCCCCCCCCCcch---
Q 019586 146 HRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQ--- 222 (338)
Q Consensus 146 ~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~~p~y~~~~~~~~~~~~~~~~~--- 222 (338)
++...|+..+.++|+|. .++...++..++..+...+.+. |....++|++|.-
T Consensus 669 ------------AL~l~P~~~~a~~nLA~----al~~lGd~~eA~~~l~~Al~l~---------P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 669 ------------AHKGLPDDPALIRQLAY----VNQRLDDMAATQHYARLVIDDI---------DNQALITPLTPEQNQQ 723 (987)
T ss_pred ------------HHHhCCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHhcC---------CCCchhhhhhhHHHHH
Confidence 45566677788888888 4456666666666666666663 2333355555421
Q ss_pred ------hhhhhhhccccccccCCcCCCCCCCCCccccCCCCCCcccccccccc-ccc--ccccccCCCCchhHHHHHHHH
Q 019586 223 ------YHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSS-EES--GDKLSYLLPDDEDFEEAIIAA 293 (338)
Q Consensus 223 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~ 293 (338)
.|+.+.|.=+=+.+..+ .+ .....-.+.++.-...||.|... .+- +-.+.+-++.+- -+-+
T Consensus 724 ~~~~~~a~~~~~r~~~~~~~~~a---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 793 (987)
T PRK09782 724 RFNFRRLHEEVGRRWTFSFDSSI---GL--RSGAMSTANNNVGGAAPGKSYRSYGQLEAEYRLGRNMLLEG-----DLLS 793 (987)
T ss_pred HHHHHHHHHHHHHHhhcCccchh---cc--ccchHhhhcccccCCCCCcchhhHHHHHHhhhccccccccc-----chhh
Confidence 23445554333333332 11 22222344444444666665433 221 112333233333 3345
Q ss_pred HhccCCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhccc
Q 019586 294 VLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSL 334 (338)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (338)
|+|-+.++.|.....+...| ..--|+-|-|=|.++.+-|
T Consensus 794 ~~~r~~~~~g~~~~~~~~~~--~~~~~g~r~kp~~~~~~~l 832 (987)
T PRK09782 794 VYSRVFADTGENGVMMPVKN--PMSGTGLRWKPLRDQIFFL 832 (987)
T ss_pred hhhhhhhhcCCCCCCCcccc--ccccceeeeccccccceee
Confidence 66655533221211111111 2445677888888887654
No 10
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=6.2e-12 Score=114.33 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-----------CCCC--HHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD-----------GPRG--VDSHLK 65 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-----------~lg~--~deAi~ 65 (338)
.++.++++..++++++.+|++.+.| .||.+|...|++++|+..|++ +.|++++ ..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3567999999999999999999988 999999999999999999999 4555544 1355 599999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|+++++++|+++.+++++|.++.++|++++|+.+|++++++.|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999998665
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.36 E-value=6.1e-12 Score=140.41 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=102.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD---------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d---------------------- 55 (338)
..|++++|+..|+++++++|++..++ .+|.+|..+|++++|+.+|+++ .|.+..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 46899999999999999999999977 9999999999999999999993 344321
Q ss_pred --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|.+..
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 2689999999999999999999999999999999999999999999999999999876
No 12
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.9e-12 Score=131.97 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=135.2
Q ss_pred HHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 17 LSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 17 LeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
+..+|+.++.| -+|+||..|++++.|+++|++ +.|.++.+ ...+|.|..+|++||.++|++-.+||
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence 33456677755 999999999999999999999 45555442 45999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhh----hhhhhhhhhcch
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVL----SKHRSVKKLFPT 155 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~----~K~~~~~kl~~~ 155 (338)
.||.+|+++++++.|.-+|++|++++|.+..++-. +..+.++.+.|...++.++..+|... .+...+--++.+
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 99999999999999999999999999999884433 36788899999999999999998732 233333344444
Q ss_pred HHHHHH-------hHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCC
Q 019586 156 ANAIKT-------QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDA 201 (338)
Q Consensus 156 ~~ai~~-------~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~ 201 (338)
..|+.. +|+=.-+++=+|.++. +-.+...++--++.++++++
T Consensus 574 ~eal~~LEeLk~~vP~es~v~~llgki~k----~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 574 VEALQELEELKELVPQESSVFALLGKIYK----RLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHH----HHccchHHHHhhHHHhcCCC
Confidence 444433 4665666666666553 11122233333666677743
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.34 E-value=1.4e-11 Score=135.43 Aligned_cols=138 Identities=14% Similarity=0.062 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+.+|++|++++|+ ...+ ++|.++..+|++++|+..|+++. |+++. ..|++++|+..|+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777777777777777775 5544 77777777777777777777733 33332 2567777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+|++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+.. .+...+....-+.+.+.....++|.
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 777777777777777777777777777777777777777777666432 2222222223344444444444444
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.6e-11 Score=127.19 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=97.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc---------CCHHHHHHHHHhh---CcCCcC----------CCCCH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ---------GRIGEAKETLRRV---KPAVAD----------GPRGV 60 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~---------G~~dEAi~~~~k~---~p~~~d----------~lg~~ 60 (338)
+.+++|+.+|++|++++|+++.+| ++|.||... +++++|+..++++ .|.++. ..|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 357899999999999999999988 999888644 3489999999994 444444 27899
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|.++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA 407 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999999999999999999999999999999999765
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=6.8e-11 Score=103.41 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
..|++++|+..|++++..+|++...+ .+|.+|..+|++++|+..|+++. |.++. ..|++++|+..|
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 46899999999999999999998876 99999999999999999999944 33332 278999999999
Q ss_pred HHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccC
Q 019586 68 ERAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDV 138 (338)
Q Consensus 68 ekAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~ 138 (338)
++++... +.....+.++|.++...|++++|..+|.++++.+|.+... ++.+....++.+.+...+...+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999864 4566789999999999999999999999999999987652 223345566666676666665544
No 16
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=3.5e-11 Score=124.73 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye 68 (338)
.+++++|+.++++|++++|+++.++ .+|.++..+|++++|+..|++ +.|+++. ..|++++|+.+|+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3568999999999999999999988 999999999999999999999 5555554 2899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC-CCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ-PCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~-P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++++|+++.+++.++.+++..|++++|+.+++++++.. |.++. .++.+....|+.+.|...+.......|.
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999999999888888888889999999999999999875 66665 3344456788888888887765554554
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=9.6e-11 Score=102.47 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--CcC-------------CCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--VAD-------------GPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~~d-------------~lg~~deAi~ 65 (338)
..|++++|+.+|++++++.|.+...+ ++|.++..+|++++|+..|+++... .+. ..|++++|+.
T Consensus 77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 46899999999999999999998866 9999999999999999999995432 111 2789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|+++++..|+...++..+|.++...|++++|..+++++++..|.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 204 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE 204 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999776554
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=3.3e-11 Score=103.93 Aligned_cols=85 Identities=5% Similarity=-0.086 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~ 133 (338)
.|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|.++..+.. .....|+.+.|...+.
T Consensus 37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999884433 3556777778887777
Q ss_pred hcccCCCh
Q 019586 134 SNVDVNPI 141 (338)
Q Consensus 134 ~al~~~P~ 141 (338)
.++..+|.
T Consensus 117 ~Al~~~p~ 124 (144)
T PRK15359 117 TAIKMSYA 124 (144)
T ss_pred HHHHhCCC
Confidence 76554443
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.26 E-value=8.5e-11 Score=124.36 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHH----HHHHHHhhC---cCCcC----------CCCCHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGE----AKETLRRVK---PAVAD----------GPRGVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dE----Ai~~~~k~~---p~~~d----------~lg~~deA 63 (338)
..|++++|+..|+++++++|++...+ ++|.+|..+|++++ |+..|+++. |.++. ..|++++|
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35788888888888888888888766 88888888888885 788888843 44332 26788888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
+..|+++++++|+++.++.++|.+|..+|++++|+.+|+++++.+|.+.... +.+....++.+.|...+...+..+|
T Consensus 304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8888888888888888888888888888888888888888888888765411 2234567777888888888887777
Q ss_pred hhhh
Q 019586 141 IVLS 144 (338)
Q Consensus 141 ~~~~ 144 (338)
....
T Consensus 384 ~~~~ 387 (656)
T PRK15174 384 SHLP 387 (656)
T ss_pred hhch
Confidence 7553
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=9.5e-11 Score=123.99 Aligned_cols=192 Identities=7% Similarity=-0.080 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+..|+++++++|+++.++ .+|.++..+|++++|+..|+++ .|.++. ..|++++|+..|+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 4555555555555555555555544 5555555555555555555552 233222 1455555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc----ccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI----LPTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~----l~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
+++...|+.+.++..++ .+...|++++|+..|+++++.+|..... ........++.+.|...+...+..+|....
T Consensus 169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~ 247 (656)
T PRK15174 169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA 247 (656)
T ss_pred HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 55555555555544432 2444555555555555555544322110 011122344555555555555555554221
Q ss_pred hhhhhh---------------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 145 KHRSVK---------------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 145 K~~~~~---------------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
....+. .+..+.+++...|+...++.++|. .++.+.++.+++..+...+.+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~----~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYAD----ALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHh
Confidence 111000 122233455556666666666666 334444555554444444433
No 21
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=1.4e-10 Score=107.37 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ 66 (338)
|+.|++..|...+++||+++|++..+| .++.+|.++|+.+.|-+.|++ +.|...+ .+|++++|...
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence 468999999999999999999999988 999999999999999999999 4455544 37799999999
Q ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 67 YERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 67 yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|++|+.. |. .+..|.|+|.|.+++|+++.|...|+++|+++|+++.
T Consensus 126 F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 126 FERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred HHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 9999874 54 4478899999999999999999999999999998877
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.22 E-value=8.3e-11 Score=115.92 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|+|++|+.+|++||+++|++..+| ++|.+|..+|++ ++|+.++++|++++|+++.+
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~---------------------~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF---------------------TEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCcCCHHH
Confidence 46899999999999999999999977 999999999999 55666677799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
|+++|.+|+.+|+|++|+.+|+++++++|.++..
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999999999998873
No 23
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.21 E-value=7.4e-11 Score=103.87 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|++++|+..|+.+..++|.+...| +||.|+..+|+| .+|+.+|.+|+.++|+++..
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------------------~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------------------GEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCCCCchH
Confidence 57999999999999999999999977 999999999999 66677777799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
++++|.+++..|+.+.|+.+|+.++...-.+
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999887433
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.20 E-value=2.5e-10 Score=127.64 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=101.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------------- 55 (338)
..|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++. |.+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 46899999999999999999999877 99999999999999999999943 44321
Q ss_pred ------------------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 56 ------------------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 56 ------------------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
..|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 14899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcc
Q 019586 106 QPQPCKDH 113 (338)
Q Consensus 106 kl~P~~~~ 113 (338)
+.+|.++.
T Consensus 523 ~~~P~~~~ 530 (1157)
T PRK11447 523 QQKPNDPE 530 (1157)
T ss_pred HcCCCCHH
Confidence 99999876
No 25
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=1.5e-10 Score=96.49 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=90.3
Q ss_pred HHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCCC
Q 019586 11 DAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 11 ~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~Pd 76 (338)
+.|++++.++|++.... .+|.++...|++++|+..|+++. |.++. ..|++++|+.+|+++++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999887755 99999999999999999998843 43333 267899999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++..++++|.++...|++++|+..|+++++++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999998766
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=2.2e-10 Score=109.74 Aligned_cols=76 Identities=20% Similarity=0.154 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+..|++|++++|+++.+| ++|.+|..+|++++|+..|+++ .|.+.. ..|++++|+..|+
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3555555555555555555555544 5555555555555555555552 222222 1345555555555
Q ss_pred HHHHhCCCCH
Q 019586 69 RAQQMLKDLE 78 (338)
Q Consensus 69 kAL~l~Pd~~ 78 (338)
++++++|+++
T Consensus 157 ~al~~~P~~~ 166 (296)
T PRK11189 157 AFYQDDPNDP 166 (296)
T ss_pred HHHHhCCCCH
Confidence 5555555544
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=6.7e-11 Score=122.05 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
+++++.||++|++|+.+||+++.+| -+|.=+.....||.|..+|+++...++. .+++++.|...|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 5688999999999999999888888 8888888888899999999884433332 2668899999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
+|++++|.+......+|.++.++|+.++|+..|++|+.++|.++. ..+.+....++.+.+...+..-..+-|.-.++
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 999999998888888899999999999999999999999998876 22233455666667766666666666776666
Q ss_pred hhhhhhhcch
Q 019586 146 HRSVKKLFPT 155 (338)
Q Consensus 146 ~~~~~kl~~~ 155 (338)
..-+.+++..
T Consensus 594 ~~llgki~k~ 603 (638)
T KOG1126|consen 594 FALLGKIYKR 603 (638)
T ss_pred HHHHHHHHHH
Confidence 6555555444
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.8e-10 Score=115.85 Aligned_cols=193 Identities=10% Similarity=0.102 Sum_probs=132.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~ye 68 (338)
.|++-.|-..|.++|+++|.+...| .+|.+|..+.+-++-...|.+ ++|.+++. ++++++|+..|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777755 777777777777777777777 56666652 557777777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh---
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV--- 142 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~--- 142 (338)
+|+.++|++.-+|..++.+++++++++++...|+.+.+.-|..++.+ +.+..-+.+.+-|.+.++.++.+.|..
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 77777777777777777777777777777777777777777777622 333444555555677777777766651
Q ss_pred ---------------hhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 143 ---------------LSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 143 ---------------~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
+++..-...+--..+|++..|+|-.+|..+|.+. +++.++..+|.-+..+.++
T Consensus 499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~----lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE----LQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Confidence 1122222233344568888999999999999844 6667777776655544433
No 29
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.15 E-value=6.7e-10 Score=107.89 Aligned_cols=139 Identities=10% Similarity=-0.022 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC---------------CCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------GPRGVDSH 63 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------~lg~~deA 63 (338)
.|++++|+.+|+++++.+|.+...+ .++.++..+|++++|+..|+++. |.... ..|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4566666666666666655555544 66666666666666666666522 11110 13566666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc----cccchhhhcCccHHHHHhhhhcccCC
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH----ILPTTNAIKTRDDFADENIDSNVDVN 139 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~----~l~~l~~~~~~~~~A~e~~~~al~~~ 139 (338)
+.+|++++++.|+...+++.+|.++...|++++|+..|+++++.+|.+.. .+..+....++.+.+...+...+..+
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666666666666666666666554321 11112334455555555555544444
Q ss_pred Ch
Q 019586 140 PI 141 (338)
Q Consensus 140 P~ 141 (338)
|.
T Consensus 280 p~ 281 (389)
T PRK11788 280 PG 281 (389)
T ss_pred CC
Confidence 43
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.13 E-value=1.2e-09 Score=113.88 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y 67 (338)
+.|++++|+..|+++++++|++...+ .++.++...|++++|+..++++....+. ..|++++|+..|
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35778888888888888887766644 5565665566666555555553222221 144555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
++++...|+. ..+.++|.++...|++++|+..++++++..|.+...+ +.+....++.+.|.+.+...+..+|
T Consensus 727 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 727 RKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 5555554444 3444445555555555555555555555444444311 1112334444444444444444444
No 31
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.12 E-value=4.5e-10 Score=119.56 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=102.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y 67 (338)
+.|.+++|+.++++++++.|++..++ +++.++.+++++++|...++++.+..|+ .+|++++|+.+|
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y 177 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACF 177 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence 57999999999999999999999988 9999999999999999999997666655 389999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
++++..+|+.+.+|.++|.++...|+.++|..+|+++++....-.
T Consensus 178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999999999999999999999999999999999998865433
No 32
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.12 E-value=1.1e-09 Score=114.00 Aligned_cols=184 Identities=11% Similarity=0.017 Sum_probs=135.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~~ye 68 (338)
..|++++|+..++++.+..|.....+ .+|.++...|++++|+..|+++....+. ..|++++|+..++
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46889999999999999998888866 8899999999999999999984433332 2789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
++++..|++..+++.+|.+|..+|++++|+.+|+++++..|.++..+..+ ....+. ..+.+.+...+...|.....
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~ 839 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI 839 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence 99999999999999999999999999999999999999999877633322 344555 55777777777766654322
Q ss_pred hhhh----h-------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhh
Q 019586 146 HRSV----K-------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQL 190 (338)
Q Consensus 146 ~~~~----~-------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~ 190 (338)
...+ . .+..+.+++...|...+++.+++. .++...++..++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~----~~~~~g~~~~A~ 891 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL----ALLATGRKAEAR 891 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH----HHHHcCCHHHHH
Confidence 2111 1 222234566666777778888877 445555555544
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=7e-10 Score=102.89 Aligned_cols=112 Identities=23% Similarity=0.280 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh--hCcCCcC-------------CCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR--VKPAVAD-------------GPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k--~~p~~~d-------------~lg~~deAi~ 65 (338)
++|+.+-|.+.|++|+.++|++.+.+ |+|..++.+|++++|..+|++ ..|.++. ..|+++.|..
T Consensus 81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence 57899999999999999999999977 999999999999999999999 5566665 2789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+|+++|+++|+++.+...++..+++.|+|.+|...+++....-+..+.
T Consensus 161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence 999999999999999999999999999999999999998877775554
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.07 E-value=2.2e-09 Score=104.26 Aligned_cols=140 Identities=11% Similarity=0.049 Sum_probs=115.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC--cC---------------CCCCHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV--AD---------------GPRGVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~--~d---------------~lg~~deA 63 (338)
..|++++|+..|+++++.+|++...+ .+|.+|..+|++++|+..++++.... .. ..|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 35899999999999999999998866 99999999999999999999943321 10 26899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc--------ccchhhhcCccHHHHHhhhhc
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI--------LPTTNAIKTRDDFADENIDSN 135 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~--------l~~l~~~~~~~~~A~e~~~~a 135 (338)
+..|+++++..|....++..++.++...|++++|+..|+++++..|.+... ++.+....++.+.|...+...
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998875431 111234556777777777777
Q ss_pred ccCCCh
Q 019586 136 VDVNPI 141 (338)
Q Consensus 136 l~~~P~ 141 (338)
+..+|.
T Consensus 207 l~~~p~ 212 (389)
T PRK11788 207 LAADPQ 212 (389)
T ss_pred HhHCcC
Confidence 666665
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=7.1e-10 Score=82.66 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=59.4
Q ss_pred CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHH
Q 019586 23 NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLG 100 (338)
Q Consensus 23 ~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~ 100 (338)
++..| ++|.++...|+| ++|+.+|+++++++|+++.+|+++|.++..+| ++.+|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~---------------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY---------------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH---------------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 45555 999999999999 56666677799999999999999999999999 79999999
Q ss_pred HHHHHccCC
Q 019586 101 SSSIWQPQP 109 (338)
Q Consensus 101 yekALkl~P 109 (338)
|+++++++|
T Consensus 61 ~~~al~l~P 69 (69)
T PF13414_consen 61 FEKALKLDP 69 (69)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHcCc
Confidence 999999998
No 36
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=3.4e-09 Score=103.43 Aligned_cols=114 Identities=10% Similarity=0.028 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhh---CcCCcC----------CCCC--HHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRV---KPAVAD----------GPRG--VDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~---~p~~~d----------~lg~--~deAi 64 (338)
..+++++|+..+.++|+++|++..+| .+|.++..+| ++++|+..+.++ .|.+.. .+++ +++++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 35688999999999999999999988 9999999999 689999999984 444433 1444 37789
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
.+++++++++|.+..+|..+|.++...|++++|+.++.++|+++|.+...+
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 999999999999999999999999999999999999999999999987733
No 37
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=110.59 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-h--CcCCc------------------C---------
Q 019586 7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-V--KPAVA------------------D--------- 55 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~--~p~~~------------------d--------- 55 (338)
..||..++++++++|++-++. .||.+|...|.-.+|..++.+ + .|.+. +
T Consensus 336 ~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 336 QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHH
Confidence 456666666666666666655 666667666666666666666 1 11000 0
Q ss_pred --------------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 --------------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 --------------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..++|+.|++||+.||+.+|++...|+.||.++..-.+.++|+..|++||++.|
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP 495 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP 495 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence 034777777777777777777777777777777777777777777777777777
Q ss_pred CCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586 110 CKDHILPTT---NAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 110 ~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P 140 (338)
.......++ ...+|-...|...+..++...+
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 766533332 3445555556555555554333
No 38
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=7.6e-09 Score=94.40 Aligned_cols=112 Identities=15% Similarity=0.152 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHcCCHHHHHHHHHhh---CcCCcCC------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMKQGRIGEAKETLRRV---KPAVADG------------------ 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~------------------ 56 (338)
..|+|++|+..|++++..+|++.. + +.+|.+|..+|++++|+..|+++ .|.++..
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 468999999999999999998763 3 49999999999999999999994 4444431
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 ---PRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 ---lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+++++|+..|+++++..|+...++ ..+|.+|..+|++.+|+..|++++...|+.+.
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 1678999999999999999987543 46788999999999999999999999888653
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3e-09 Score=108.54 Aligned_cols=145 Identities=14% Similarity=0.115 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD---------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d---------------------- 55 (338)
..|++.+|..+|.+|..+||.++.+| .+|.+|...|.-++|+.+|..+ .+....
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 35889999999999999999999988 9999999999999999999773 222211
Q ss_pred ----------------------CCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 56 ----------------------GPRGVDSHLKAYERAQQML-------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 ----------------------~lg~~deAi~~yekAL~l~-------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..+.|.+|+.+|+.++..- +.|...+.|||.++.+++++.+|+.+|+++|.
T Consensus 404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1358899999999888432 23667789999999999999999999999999
Q ss_pred cCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhh
Q 019586 107 PQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKH 146 (338)
Q Consensus 107 l~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~ 146 (338)
+.|.++..+..+ ....|..+-|.+.+..++.++|......
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~ 526 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS 526 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence 999998866554 6678888899999999999999865443
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.94 E-value=6.4e-09 Score=76.51 Aligned_cols=88 Identities=25% Similarity=0.357 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|++++|+..|+++++..|++...+ .+|.++...|++ ++|+.+|++++.+.|....+
T Consensus 12 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY---------------------EEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhCCCcchhH
Confidence 35889999999999999999887755 999999999888 55666667788999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+..+|.++...|++++|..++.++++..|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999998873
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=1.9e-09 Score=101.42 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIA--PDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeld--Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ 66 (338)
.++++++...++++.... ++++..+ .+|.++...|++++|+..|++ ..|++++ ..|+++++...
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 456677777777766544 3444444 677777777777777777777 3344333 25666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE 130 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e 130 (338)
++...+..|+++..|..+|.++..+|++++|+.+|+++++.+|.++.++ +.+....|+.+.|..
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6666666666666677777777777777777777777777777766522 222344454444443
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=1.4e-08 Score=81.67 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
..|++++|+..|.+++..+|++. ..+ .+|.++...|++ ++|+.+|++++...|+.
T Consensus 14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY---------------------ADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH---------------------HHHHHHHHHHHHHCCCC
Confidence 46889999999999999888763 333 899999999988 55566666688888875
Q ss_pred ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 78 ---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 78 ---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.+++.+|.++..+|++++|+.+|+++++..|++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 688999999999999999999999999999998765
No 43
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.3e-09 Score=107.69 Aligned_cols=92 Identities=17% Similarity=0.308 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|+|..|+.+|.+||..+|+++.+| |+|.||.++|.+ ..|+...+++|+++|++..+
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~---------------------~~aL~Da~~~ieL~p~~~kg 428 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY---------------------PEALKDAKKCIELDPNFIKA 428 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCchHHHH
Confidence 56899999999999999999999977 999999999999 66777788899999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
|.+.|.++..+.+|++|..+|+++++++|.+.++
T Consensus 429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 9999999999999999999999999999998873
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.91 E-value=1.1e-08 Score=109.92 Aligned_cols=138 Identities=9% Similarity=0.004 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCc---C--------------CCCCHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVA---D--------------GPRGVDSHL 64 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~---d--------------~lg~~deAi 64 (338)
|++++|+..|+++++..|..+. ...+|.+|..+|++++|+..|+++....+ . ..+++++|+
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 4555555555555555432222 11245555555555555555555321111 0 135555555
Q ss_pred HHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccH
Q 019586 65 KAYERAQQMLKD---------------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDD 126 (338)
Q Consensus 65 ~~yekAL~l~Pd---------------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~ 126 (338)
..+++++...|. ...++..+|.++...|++++|+.++++++...|.+..++ +.+....++.+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 555555555441 123445555555555555555555555555555554422 22233445555
Q ss_pred HHHHhhhhcccCCCh
Q 019586 127 FADENIDSNVDVNPI 141 (338)
Q Consensus 127 ~A~e~~~~al~~~P~ 141 (338)
.|...+..++..+|.
T Consensus 411 ~A~~~l~~al~l~Pd 425 (765)
T PRK10049 411 AAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHhhCCC
Confidence 555555555555555
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.2e-08 Score=102.51 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------CCCHHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG----------PRGVDSHLKAYER 69 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~----------lg~~deAi~~yek 69 (338)
++++.|+.+|++|+++||....+| -+|.=|+.+.+...|+..|+++ +|.+..+ ++-+.=|+-+|++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 578999999999999999999999 9999999999999999999994 4443322 5577778999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++.|+++..|..||.+|.++++.++|+.||.+++...-.+..
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 99999999999999999999999999999999999988766444
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.89 E-value=1.8e-08 Score=108.34 Aligned_cols=137 Identities=11% Similarity=0.038 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+..|.+++.++|..+..+ ++|.++..+|++++|+..|++ +.|.+++ ..|++++|+..++
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~ 107 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK 107 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6899999999999999999999877 999999999999999999999 4555554 2789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++++..|+++. ++.+|.++...|++++|+.+|++++++.|++...+. .+....+..+.|...+..... +|.
T Consensus 108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 99999999999 999999999999999999999999999999987332 223344555556655555443 443
No 47
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.3e-08 Score=102.70 Aligned_cols=149 Identities=11% Similarity=0.170 Sum_probs=122.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y 67 (338)
++.+-++-...|.+|..+||.+++.| ++|.++.-+++|++|+..|+++...+|+ .++++++++..|
T Consensus 372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~F 451 (606)
T KOG0547|consen 372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTF 451 (606)
T ss_pred hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999955 9999999999999999999995555554 267999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc--------cchhhhcCccHH--HHHhhhhccc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL--------PTTNAIKTRDDF--ADENIDSNVD 137 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l--------~~l~~~~~~~~~--A~e~~~~al~ 137 (338)
+.+++--|+.+++|...|.++..+++|+.|+..|.+|+.+.|....++ ..+...+|..++ +...+..++.
T Consensus 452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 452 EEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred HHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999833311 112223344444 5778888999
Q ss_pred CCChhhhhhhhhh
Q 019586 138 VNPIVLSKHRSVK 150 (338)
Q Consensus 138 ~~P~~~~K~~~~~ 150 (338)
++|..-.....+.
T Consensus 532 ~Dpkce~A~~tla 544 (606)
T KOG0547|consen 532 LDPKCEQAYETLA 544 (606)
T ss_pred cCchHHHHHHHHH
Confidence 9998655444443
No 48
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.87 E-value=4e-09 Score=82.13 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~--a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
++|+|++|+.+|+++++.+|.+ .. ++++|.||..+|+| ++|+..+++ +..++.+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y---------------------~~A~~~~~~-~~~~~~~~ 58 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY---------------------EEAIELLQK-LKLDPSNP 58 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH---------------------HHHHHHHHC-HTHHHCHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH---------------------HHHHHHHHH-hCCCCCCH
Confidence 3689999999999999999964 22 33899999999999 455555666 66778888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
..++.+|.++.++|++++|+.+|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999999875
No 49
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=6.3e-09 Score=76.83 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+|..+...|+| ++|+..|+++++..|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 2 ~~a~~~~~~g~~---------------------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDY---------------------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHH---------------------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888888 66677777799999999999999999999999999999999999999
Q ss_pred CCCCc
Q 019586 108 QPCKD 112 (338)
Q Consensus 108 ~P~~~ 112 (338)
+|+++
T Consensus 61 ~P~~p 65 (65)
T PF13432_consen 61 DPDNP 65 (65)
T ss_dssp STT-H
T ss_pred CcCCC
Confidence 99874
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=4.6e-08 Score=104.34 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=104.8
Q ss_pred hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586 19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNK 84 (338)
Q Consensus 19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nL 84 (338)
..|++.+++ +||.+...+|++++|...++++....|+ .++++++|+..+++++..+|+++.+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 367778877 9999999999999999999996555555 27899999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586 85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 85 G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
|.++.++|++++|+.+|++++..+|+++..+ +.+....|+.+.|...+..++...-
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999877733 3335677888888888888775443
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=3.5e-08 Score=86.86 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhC---cCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 019586 28 NLGICLMKQGRIGEAKETLRRVK---PAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 91 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~---p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~l 91 (338)
++|.+|...|++++|+.+|+++. +..++ ..|++++|+.+|++++++.|++..++..+|.++..+
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 66666666677766666666632 22211 156668888888889999999999999999999998
Q ss_pred CC--------------HHHHHHHHHHHHccCCCCc
Q 019586 92 SR--------------LFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 92 Gr--------------~~eAi~~yekALkl~P~~~ 112 (338)
|+ +.+|+.+++++++++|++.
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 88 5777777888888887764
No 52
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=5e-09 Score=107.09 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhCC--CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---C----------CCCHHHHHHHHHHH
Q 019586 7 IEAEDAYRRALSIAP--DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---G----------PRGVDSHLKAYERA 70 (338)
Q Consensus 7 eeAi~~y~kALeldP--d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---~----------lg~~deAi~~yekA 70 (338)
..-.++|-.|....| .+++.+ .||.+|...|+|+.|+.+|+.++...|. . -.+.++|+.+|.||
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 344567777777777 577766 8999999999999999999885444443 1 23889999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 71 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 71 L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++.|.+..++||||.+++.+|.|.||+.+|-.||.+.+....
T Consensus 491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999987543
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.80 E-value=5.6e-08 Score=105.43 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHcCCHHHHHHHHHhhC-cCCcC------------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN-KMCNLGICLMKQGRIGEAKETLRRVK-PAVAD------------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a-~a~nLG~~y~~~G~~dEAi~~~~k~~-p~~~d------------~lg~~deAi~~y 67 (338)
++|++++|+..|+++++.+|.+. ..+.+..++...|++++|+.+++++. |.... ..|++++|+..|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 68999999999999999999995 44588888889999999999999955 22222 269999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch--hhhcCccHHHHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT--NAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l--~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
+++++.+|+++.++..++.++...++.++|+..++++++.+|.+...+... .........+.+.+...+..+|....
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e 204 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE 204 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999865532221 22234443477888888888886443
No 54
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.80 E-value=4.6e-08 Score=101.19 Aligned_cols=109 Identities=12% Similarity=0.041 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--------CHHHHHHHHHh--h---CcCCcC----------CCCC
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--------RIGEAKETLRR--V---KPAVAD----------GPRG 59 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--------~~dEAi~~~~k--~---~p~~~d----------~lg~ 59 (338)
+.+..|+.+|++|++++|+++.+| .++.+|.... ++..+....++ . .+..+. ..|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 457899999999999999999988 7777775542 34455555555 2 222222 2789
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++|...|++|++++|+ ..+|..+|.++...|++++|+.+|++|+.++|.++.
T Consensus 436 ~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 436 TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999995 789999999999999999999999999999999876
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=7.6e-08 Score=92.53 Aligned_cols=139 Identities=14% Similarity=0.039 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHhhCcCCcC-------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQ----GRIGEAKETLRRVKPAVAD-------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~----G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi 64 (338)
..|++++|+..++++++.+|++...+..+..+... ++...+...+....+.++. ..|++++|+
T Consensus 55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 55 IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 46899999999999999999998766325455444 4445555555444455554 278999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc-------ccchhhhcCccHHHHHhhhhccc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI-------LPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~-------l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
..+++++++.|+++.++..+|.++...|++++|+.++++++...|.++.. ++.+....|+.+.+...+...+.
T Consensus 135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998864432 23345677878888777777654
Q ss_pred CCC
Q 019586 138 VNP 140 (338)
Q Consensus 138 ~~P 140 (338)
..|
T Consensus 215 ~~~ 217 (355)
T cd05804 215 PSA 217 (355)
T ss_pred ccc
Confidence 444
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.78 E-value=5.5e-08 Score=88.71 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHc--------CCHHHHHHHHHhhC---cCCcC-----------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQ--------GRIGEAKETLRRVK---PAVAD----------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~--------G~~dEAi~~~~k~~---p~~~d----------- 55 (338)
+.|++++|+..|+++++..|++.. .+.+|.++... |++++|+..|+++. |....
T Consensus 82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 578999999999999999998776 34999999876 88999999999943 44322
Q ss_pred ----------------CCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 ----------------GPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 ----------------~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..|++.+|+..|+++++..|+ .+.+++++|.++..+|++++|..+++......|
T Consensus 162 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 162 RNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 148999999999999999765 468999999999999999999999887765544
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.78 E-value=1.4e-08 Score=95.67 Aligned_cols=140 Identities=19% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC--cCCcC-------------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK--PAVAD-------------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~--p~~~d-------------~lg~~deAi~~ 66 (338)
..+++++|+..++++.+..++......+..++...++++++...++++. +..+. ..|++++|+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3567788888888777765432223366667778888888888877732 21111 26788888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
|++|++++|+++.++..++.++...|++++|...+....+..|.++.+ ++......++.+.|...+...+..+|.
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 888888888888888888888888888888777777666666666653 233355667777777777777776665
No 58
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=8.7e-08 Score=83.84 Aligned_cols=86 Identities=16% Similarity=-0.015 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 019586 28 NLGICLMKQGRIGEAKETLRRV---KPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV-- 89 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~-- 89 (338)
++|.++..+|++++|+..|+++ .++... ..|++++|+.+|++|+++.|.....+.++|.++.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 5555555555555555555553 121111 1455678888888899999999999999999999
Q ss_pred -----HCCCHH-------HHHHHHHHHHccCCCCcc
Q 019586 90 -----EQSRLF-------DAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 90 -----~lGr~~-------eAi~~yekALkl~P~~~~ 113 (338)
.+|++. +|+.+|++++..+|.+..
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 777766 666677778888886543
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.70 E-value=9e-08 Score=87.05 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=104.8
Q ss_pred HHHHHHcCCHHHHHHHHHhh-CcCCc-CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 30 GICLMKQGRIGEAKETLRRV-KPAVA-DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 30 G~~y~~~G~~dEAi~~~~k~-~p~~~-d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
+..|...|+|.......++. .+..+ ...++.++++..|+++++.+|+++++|+.||.+|...|++++|+.+|++++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44688999999887776653 33321 13678899999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchh----hhcCc--cHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhh
Q 019586 108 QPCKDHILPTTN----AIKTR--DDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVL 181 (338)
Q Consensus 108 ~P~~~~~l~~l~----~~~~~--~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~ 181 (338)
+|+++.++..+. ...++ ...+.+.+.. ++...|+..+++.++|. .++
T Consensus 103 ~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~-----------------------al~~dP~~~~al~~LA~----~~~ 155 (198)
T PRK10370 103 RGENAELYAALATVLYYQAGQHMTPQTREMIDK-----------------------ALALDANEVTALMLLAS----DAF 155 (198)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-----------------------HHHhCCCChhHHHHHHH----HHH
Confidence 999988543321 12232 2444444444 45555666677777777 556
Q ss_pred hhhhhhhhhccccccCCC
Q 019586 182 AQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 182 ~d~r~~~~~~~~~~~~~~ 199 (338)
...++.+++..+...+.+
T Consensus 156 ~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 156 MQADYAQAIELWQKVLDL 173 (198)
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 667777776665555544
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.4e-08 Score=99.53 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC-------cCCc-C------------CCCC
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK-------PAVA-D------------GPRG 59 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~-------p~~~-d------------~lg~ 59 (338)
|+.++++-|..+|.+|+.+.|.++-.. .+|.+....+.|.+|+.+|+.+. +.-+ + .++.
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 356789999999999999999999855 99999999999999999999933 1111 1 2679
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++|+.+|+++|.+.|.++.+|..+|.+|..+|+++.|+++|.++|.++|++.-
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 999999999999999999999999999999999999999999999999999854
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.9e-07 Score=91.73 Aligned_cols=146 Identities=12% Similarity=0.061 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHHh-CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------------------
Q 019586 5 NYIEAEDAYRRALSI-APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------------------- 55 (338)
Q Consensus 5 ~~eeAi~~y~kALel-dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------------------- 55 (338)
..++++.-+++.+.+ -|.+.-.- ..|.++..+.++++|+..|+.+..++|-
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 356667667776666 34333322 6777777777788888877775444432
Q ss_pred --------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 56 --------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 56 --------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
..+++++|+.+|++|++++|....+|.-+|.-|.++++...|+.+|++|++++|.+-..+
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 145888899999999999999899999899999999999999999999999998876633
Q ss_pred ---cchhhhcCccHHHHHhhhhcccCCChhhhhhhhhh
Q 019586 116 ---PTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVK 150 (338)
Q Consensus 116 ---~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~ 150 (338)
++..........+.-.++.+....|...--...+.
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 22244555566677777777777776444333333
No 62
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4e-07 Score=87.32 Aligned_cols=109 Identities=14% Similarity=0.041 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-------------CCCHHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG-------------PRGVDSHLKAY 67 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-------------lg~~deAi~~y 67 (338)
..++-+.-.+.-+..+|++.+-| -||.+|+.+|+++.|...|++ +.|++++. .....++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46778888999999999999977 999999999999999999999 66777762 44778899999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++++++|.+..+.+.||..++++|+|.+|+..|+..+...|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999998776
No 63
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.63 E-value=2e-07 Score=87.79 Aligned_cols=91 Identities=24% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+.|+|.+|+..+++|..+.|+++++| .+|.+|.+.|++ ++|...|.+|+++.|+.+.+
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~---------------------~~Ar~ay~qAl~L~~~~p~~ 170 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF---------------------DEARRAYRQALELAPNEPSI 170 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh---------------------hHHHHHHHHHHHhccCCchh
Confidence 45777777777777777777777777 777777777777 66666777799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++|+|..|.-.|+++.|...+.++...-+.+..
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~ 203 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR 203 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence 999999999999999999999998877766655
No 64
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.4e-07 Score=90.45 Aligned_cols=144 Identities=13% Similarity=0.043 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHcCC------HH-HHHHHHHhhC--cCCcCCCCCHHHHHHHHHHHHHh
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC---NLGICLMKQGR------IG-EAKETLRRVK--PAVADGPRGVDSHLKAYERAQQM 73 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~---nLG~~y~~~G~------~d-EAi~~~~k~~--p~~~d~lg~~deAi~~yekAL~l 73 (338)
.+-|+.+++.++.+.++..... .+-.++....+ .. +....-+++. -+..-.-++|.+|+..|.+||++
T Consensus 31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l 110 (304)
T KOG0553|consen 31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL 110 (304)
T ss_pred HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4668888888888877655422 22223322222 11 1222222211 11111356899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhh
Q 019586 74 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSV 149 (338)
Q Consensus 74 ~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~ 149 (338)
+|.++..|-|++.+|.++|.++.|+..++++|.+||.....+..+ ...+++...|.+.+..++.++|..-.-+..+
T Consensus 111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999988865554 6678888889999999999999866544333
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.59 E-value=5.3e-07 Score=89.92 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
+.|++++|+..++++++.+|++..++ -++.+|...|+|++|+..+.+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 47899999999999999999999977 999999999999999966555
No 66
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.58 E-value=4.9e-07 Score=96.48 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye 68 (338)
.|++++|+..+..+|..+|.+..+| .||.||..+|+.++|....-. ++|.+.+ .+|.+.+|+-||.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5999999999999999999999987 999999999999999998877 5666654 3889999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+||+.+|.+-...+....+|.++|++..|..+|.+++++.|.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999999999993
No 67
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.1e-07 Score=101.91 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------------ 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------------ 55 (338)
+.|+|-.|+.+|++|+.++|.... .. .+|.|+.++|+.+.|+..|.++...+|.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 457888888888888888886554 33 7888888888888888888884443333
Q ss_pred --------------------------CCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 56 --------------------------GPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 --------------------------~lg~~deAi~~yekAL~l~P---d~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..|+|..+...++.|+...- --++.+|.+|.+|+.+|+|++|..+|..+++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 14577777777777776542 2335578889999999999999999999999
Q ss_pred cCCCCcc-c---ccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhhhcchH---------------HHHHHhHhHHH
Q 019586 107 PQPCKDH-I---LPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTA---------------NAIKTQENFAD 167 (338)
Q Consensus 107 l~P~~~~-~---l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~---------------~ai~~~~~~~e 167 (338)
.+|++.. . ++..+...+...-+...+...+..+|..+.....+..++... +..+..+...+
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~ 415 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE 415 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence 9888732 1 122245555556677777777777787665444444444443 13333466666
Q ss_pred HhhchhhhhhHhhhhhhhhhhhhccccccC
Q 019586 168 ENINANIVVNQTVLAQQRGVQQLAPFGNSW 197 (338)
Q Consensus 168 ~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~ 197 (338)
+|.+++.+. -+.++-..+.+|+.++
T Consensus 416 a~l~laql~-----e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 416 AWLELAQLL-----EQTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHH-----HhcChHHHHHHHHHHH
Confidence 777777744 3333333455566554
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.56 E-value=1e-07 Score=70.87 Aligned_cols=47 Identities=36% Similarity=0.620 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k 48 (338)
+.|+|++|+.+|++||+++|+++.++ ++|.+|..+| ++++|+..|++
T Consensus 15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 47899999999999999999999977 9999999999 68554444433
No 69
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.5e-07 Score=93.56 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=136.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG---------------------- 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~---------------------- 56 (338)
+.+|.+|+..|..||.+.|+++.+| |.+.+|+..|+|++|.-.+++ +.+.+...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 4579999999999999999999988 999999999999999988877 44444320
Q ss_pred ----------------------------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586 57 ----------------------------------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 96 (338)
Q Consensus 57 ----------------------------------------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e 96 (338)
++++++|...--..+++++.+.++++-.|.+++..++.+.
T Consensus 142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k 221 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK 221 (486)
T ss_pred hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence 4678888888888899999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCcccccc---------------hhhhcCccHHHHHhhhhcccCCChhhh---hhhhh-----h---
Q 019586 97 AFLGSSSIWQPQPCKDHILPT---------------TNAIKTRDDFADENIDSNVDVNPIVLS---KHRSV-----K--- 150 (338)
Q Consensus 97 Ai~~yekALkl~P~~~~~l~~---------------l~~~~~~~~~A~e~~~~al~~~P~~~~---K~~~~-----~--- 150 (338)
|+.+|+++|.++|++...... -....|....+.+.+..++.++|...- |.-.. .
T Consensus 222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg 301 (486)
T KOG0550|consen 222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG 301 (486)
T ss_pred HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence 999999999999998762211 145778888899999999999997321 11111 1
Q ss_pred ----hhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 151 ----KLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 151 ----kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
.+..+.+++++.+.+.++|.--+...
T Consensus 302 rl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 302 RLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 22333446677777888877777755
No 70
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.55 E-value=4e-07 Score=81.88 Aligned_cols=94 Identities=14% Similarity=0.150 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH---HHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI---GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~---dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
|+.|++.++.....+|.+++.+ +-|.+|..+.++ .++..++ ++|+.-|++||.++|+...++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mi--------------edAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMI--------------EDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH--------------HHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHH--------------HHHHHHHHHHHhcCCchHHHH
Confidence 6889999999999999999955 888888777665 5677777 679999999999999999999
Q ss_pred HHHHHHHHHCCC-----------HHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr-----------~~eAi~~yekALkl~P~~~~ 113 (338)
+++|.+|..++. |++|..||++|...+|.+..
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999998776 78889999999999998865
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.55 E-value=3.8e-07 Score=93.96 Aligned_cols=109 Identities=21% Similarity=0.184 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-----CCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586 2 QQNNYIEAEDAYRRALSIA-----PDNNK---MC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld-----Pd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d--------- 55 (338)
.+++|.+|+..|++|+.+- ++++. .+ |||.+|.++|+|++|..+++++.. ..++
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 5789999999999999973 44444 44 999999999999999999998322 2222
Q ss_pred ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
.++++++|..+|.+++++- +..+..+.+||.+|+.+|+|.+|...|++|+++.-.
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2789999999999999874 234577899999999999999999999999988643
No 72
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=1e-06 Score=86.01 Aligned_cols=110 Identities=13% Similarity=-0.014 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH--HHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI--GEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~--dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
++++|+.++.++++.+|++..+| ++|.++..+|+. ++++.++.++...++. .+|++++|+.++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 57999999999999999999977 999999999874 7788888884444433 3789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHC---CCH----HHHHHHHHHHHccCCCCccc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQ---SRL----FDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~l---Gr~----~eAi~~yekALkl~P~~~~~ 114 (338)
++|+++|++..+|+.+|.++... |++ ++++.+..+++.++|++...
T Consensus 167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence 99999999999999999998876 334 46788888999999998763
No 73
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3e-07 Score=91.19 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCHH-----------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAP----DNNK-----------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldP----d~a~-----------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~ 65 (338)
+.|+|..|...|++|+..-. .+.+ .| ||+.||.++++| .+|+.
T Consensus 220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---------------------~~Ai~ 278 (397)
T KOG0543|consen 220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---------------------KEAIE 278 (397)
T ss_pred hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---------------------HHHHH
Confidence 57899999999999998632 1111 22 999999999999 67788
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+..++|+++|++..++|+.|.++..+|+|+.|+..|+++++++|.|..+.
T Consensus 279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~ 328 (397)
T KOG0543|consen 279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR 328 (397)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 88889999999999999999999999999999999999999999996644
No 74
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.54 E-value=3.1e-07 Score=92.69 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=61.7
Q ss_pred hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCH
Q 019586 19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE---MMNKGGDRVEQSRL 94 (338)
Q Consensus 19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a---~~nLG~~l~~lGr~ 94 (338)
.+|+++++| |+|.+|..+|+| ++|+.+|++||+++|++.++ |+|+|.+|..+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry---------------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV---------------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH
Confidence 478899977 999999999999 55666677799999999965 99999999999999
Q ss_pred HHHHHHHHHHHcc
Q 019586 95 FDAFLGSSSIWQP 107 (338)
Q Consensus 95 ~eAi~~yekALkl 107 (338)
++|+.+|++|+++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 75
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=4.2e-07 Score=80.26 Aligned_cols=91 Identities=9% Similarity=-0.064 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.|.+|.-+...|++ ++|...|+-+..++|.+...|++||.++..+|+|.+|+.+|.+++
T Consensus 38 lY~~A~~ly~~G~l---------------------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 38 LYRYAMQLMEVKEF---------------------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHHHHHHHHHCCCH---------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66888888888888 555666666999999999999999999999999999999999999
Q ss_pred ccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586 106 QPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 106 kl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
.++|+++. ..+......+....|...+..++.
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998 333345677777777777776654
No 76
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.53 E-value=1.1e-06 Score=75.32 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVD 61 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~d 61 (338)
..+++..+...+++.++-+|+..- + +.+|.++...|++++|+..|+.+....++ ..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 357888888889999999998844 2 28999999999999999999996544433 278999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
+|+..++. +.-.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999966 33344456778889999999999999999999875
No 77
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=3.5e-07 Score=81.21 Aligned_cols=90 Identities=14% Similarity=0.043 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
++|++++|+..|+-...++|.+.+++ .||.|+..+++| ++|+..|..|.-++++++..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y---------------------~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF---------------------QKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHcccCCCCc
Confidence 57999999999999999999999977 999999999999 55666667799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+..|.+|+.+|+...|+.||+.++. .|.+..
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 99999999999999999999999998 455444
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.52 E-value=9.5e-07 Score=84.11 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD- 76 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd- 76 (338)
..|+|++|+..|++.++..|+.. . .|-+|.+|...|++++ |+..|++++...|+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~---------------------A~~~f~~vv~~yP~s 213 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDD---------------------AAYYFASVVKNYPKS 213 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHH---------------------HHHHHHHHHHHCCCC
Confidence 35789999999999999998874 3 3489999999888855 55555557777666
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 77 --LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 77 --~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+++++.+|.++..+|++++|+..|+++++..|+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 5688999999999999999999999999999998765
No 79
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.52 E-value=1.4e-07 Score=92.20 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
+++|+|+|||.||.++|.++|.++..+ |++.+|.++.+| ..|...++.|+.++..+..
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F---------------------A~AE~DC~~AiaLd~~Y~K 166 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF---------------------AQAEEDCEAAIALDKLYVK 166 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH---------------------HHHHHhHHHHHHhhHHHHH
Confidence 358999999999999999999999988 999999999988 5667778889999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+|.+.|.+...+|+..||...|+.+|++.|++-+
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 9999999999999999999999999999999766
No 80
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.9e-06 Score=81.31 Aligned_cols=139 Identities=10% Similarity=0.032 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|+.+-|..++.+.-...|.....- -.|..+-..|+|++|+++|+.+..++|. ++|+.-+||+.+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 5677889999999888888888766 8889999999999999999998777765 4899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch------hhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT------NAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l------~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.-++.-+.+.++|..|+.+|...|.|.+|.-||+..+=++|-++.....+ .+....-.++...+..++.++|.
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999999999999999999999988743322 12333344567777777777773
No 81
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.47 E-value=2.5e-07 Score=68.16 Aligned_cols=56 Identities=45% Similarity=0.546 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
+.|+|++|+..|+++++.+|++..++ .+|.++..+|++++| +..|++++++.|+++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A---------------------~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEA---------------------LAYYERALELDPDNP 65 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHH---------------------HHHHHHHHHHSTT-H
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH---------------------HHHHHHHHHHCcCCC
Confidence 57999999999999999999999977 999999999999555 455555777777754
No 82
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=9.1e-07 Score=81.20 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-----MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P 75 (338)
..|+|++|..-|..||++=|.... .| |.|.|++++++| +.|+....+||+++|
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~---------------------e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW---------------------ESAIEDCSKAIELNP 165 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH---------------------HHHHHHHHhhHhcCc
Confidence 468999999999999999887655 33 999999999999 667777888999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+..++.+.+.+|.++.+|++|+..|.++++++|...+
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 99999999999999999999999999999999998654
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.3e-06 Score=87.18 Aligned_cols=150 Identities=15% Similarity=0.018 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC------------CCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG------------PRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~------------lg~~deAi~ 65 (338)
+.|+.++|+-.|+.|+.+.|..-+.| .|-.+|..+|++.||...-.. +.+..+.. ..--++|.+
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 45778888888888888888888777 888888888888888776655 33333332 235689999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
.|+++++++|++..+-+.++..+...|++.+++..+++.|...|++.- +++.+.......+.+.+.+..++.+||+..
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999999999999999999999999999999999999999999998754 555555666777888899999999999866
Q ss_pred hhhhhhhh
Q 019586 144 SKHRSVKK 151 (338)
Q Consensus 144 ~K~~~~~k 151 (338)
-.++.+.+
T Consensus 506 ~sl~Gl~~ 513 (564)
T KOG1174|consen 506 RTLRGLRL 513 (564)
T ss_pred HHHHHHHH
Confidence 55544433
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.45 E-value=2.3e-06 Score=83.80 Aligned_cols=182 Identities=12% Similarity=0.067 Sum_probs=109.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------------------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------------------- 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------------------- 55 (338)
|+-.-|+.-+.+.|++.||+..+. ..|.+++++|++++|+..|.++....+.
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334445555555555555555554 6777777777777777777775544442
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHh
Q 019586 56 -GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADEN 131 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~ 131 (338)
.-|++..|+....+.|++.|=.+..+...+.+|...|+...|+..++.+-++..++.+.+.. +....+....+...
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 14577777777788888877777777777888888888888888888887777777763322 23344444445555
Q ss_pred hhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCC
Q 019586 132 IDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNID 200 (338)
Q Consensus 132 ~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~ 200 (338)
+...+.+||.-... |++-+.++..-+ . +..-.....+++|+.++.+...-|...
T Consensus 246 iRECLKldpdHK~C-------f~~YKklkKv~K------~--les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 246 IRECLKLDPDHKLC-------FPFYKKLKKVVK------S--LESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred HHHHHccCcchhhH-------HHHHHHHHHHHH------H--HHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 66666667751111 111111111111 1 112225678888888887755555553
No 85
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=9.4e-07 Score=73.47 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=70.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y 67 (338)
+.|++++|+..|++++.++|++..++ ++|.+|..+|++++|+.+|+++. |.+++ ..|++++|+..|
T Consensus 29 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46899999999999999999999977 99999999999999999999953 33333 388999999999
Q ss_pred HHHHHhCCCCHHHH
Q 019586 68 ERAQQMLKDLESEM 81 (338)
Q Consensus 68 ekAL~l~Pd~~~a~ 81 (338)
+++++++|+.....
T Consensus 109 ~~al~~~p~~~~~~ 122 (135)
T TIGR02552 109 DLAIEICGENPEYS 122 (135)
T ss_pred HHHHHhccccchHH
Confidence 99999999887644
No 86
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.45 E-value=4e-07 Score=67.37 Aligned_cols=65 Identities=31% Similarity=0.351 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
++.|+|++|+..|++++..+|++.+++ .+|.||..+|++++|... +++++..+|+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---------------------l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEEL---------------------LERLLKQDPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHH---------------------HHCCHGGGTTHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH---------------------HHHHHHHCcCHHH
Confidence 357999999999999999999999977 999999999999555554 5557777787766
Q ss_pred HHHHHHH
Q 019586 80 EMMNKGG 86 (338)
Q Consensus 80 a~~nLG~ 86 (338)
++.-++.
T Consensus 61 ~~~l~a~ 67 (68)
T PF14559_consen 61 YQQLLAQ 67 (68)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6665543
No 87
>PRK11906 transcriptional regulator; Provisional
Probab=98.43 E-value=1.5e-06 Score=88.06 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHH---HhCCCCHHHH-HHHHHHHHc--CCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 6 YIEAEDAYRRAL---SIAPDNNKMC-NLGICLMKQ--GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 6 ~eeAi~~y~kAL---eldPd~a~a~-nLG~~y~~~--G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
.+.|..+|.+|+ +++|+++.+| -++.|+... ..|.+ ......+|....++|++++|+++.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~--------------~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE--------------LELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHhcCCCCHH
Confidence 578999999999 9999999988 888888654 11111 111235667777777777777777
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
++..+|.++...|+++.|+..|++|+.++|+.+..+.. +..-.|+.+.+.+.+..++.++|.
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 77777777777777777777777777777777663222 233456667777777777777776
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=7e-07 Score=66.96 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++++|+.++++++.++|+.+..|..+|.++..+|++.+|+.+|+++++..|++..
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3377788888899999999999999999999999999999999999999998765
No 89
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=2e-07 Score=71.09 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 25 KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 25 ~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
..+ ++|.+|..+|+|++|+.+|++ |+..++..-.-.|+.+.+++++|.++..+|++++|+.+|++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~--------------al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEK--------------ALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH--------------HHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344 999999999999888888855 55553222222244567899999999999999999999999
Q ss_pred HHcc
Q 019586 104 IWQP 107 (338)
Q Consensus 104 ALkl 107 (338)
++++
T Consensus 72 al~i 75 (78)
T PF13424_consen 72 ALDI 75 (78)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9875
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.43 E-value=1.4e-06 Score=91.97 Aligned_cols=111 Identities=17% Similarity=0.038 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHH--H
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLK--A 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~--~ 66 (338)
.+.-++|..++.+|-.++|-.+..| -.|.++..+|+++||...|.- ++|++... .|+..-|.. .
T Consensus 663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~ 742 (799)
T KOG4162|consen 663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL 742 (799)
T ss_pred cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence 4567888899999999999988866 889999999999999999998 45555542 455455555 9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+..|++++|.++++|+++|.++..+|+.++|..||+.|+++.+.+|.
T Consensus 743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999999999999999998876
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.42 E-value=2.9e-06 Score=80.00 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------CCCCHHHHHHHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKP---AVAD----------GPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------~lg~~deAi~~yekAL~ 72 (338)
...+...+-+....+|++...+++...|...|+-+.+..+..++.- .+.. ..|++.+|+..+.++.+
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 3456667777788899988889999999999999999999988332 3322 26899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcc
Q 019586 73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNV 136 (338)
Q Consensus 73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al 136 (338)
+.|++.++|+-+|.+|.+.|++++|...|.+++++.|+.+.+..++ ....++..-|...+..+.
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999866554 455566656655555443
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=1.3e-06 Score=86.25 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhh
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDS 134 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~ 134 (338)
+++++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+++++++++|.++..+ +.+....++.+.|...+..
T Consensus 16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3447778888889999999999999999999999999999999999999999988733 3345678888889999999
Q ss_pred cccCCChhhh
Q 019586 135 NVDVNPIVLS 144 (338)
Q Consensus 135 al~~~P~~~~ 144 (338)
++.++|....
T Consensus 96 al~l~P~~~~ 105 (356)
T PLN03088 96 GASLAPGDSR 105 (356)
T ss_pred HHHhCCCCHH
Confidence 9988887543
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.36 E-value=2.2e-06 Score=62.75 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
+++|.++..+|++ ++|+..+++++++.|....+++.+|.++...|++++|+.+|++++.
T Consensus 4 ~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 4 LNLGNLYYKLGDY---------------------DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHhcH---------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888 5566666779999999999999999999999999999999999999
Q ss_pred cCCCCcccc---cchhhhcCccHHHHHhhhhccc
Q 019586 107 PQPCKDHIL---PTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 107 l~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~ 137 (338)
..|.+...+ +.+....+....+...+...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 999876422 1222333444444444444433
No 94
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=2.4e-06 Score=86.17 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y 67 (338)
..|+++.|...|+.|+.-+....++. |+|.++..+|++++|+.+|-++ +-+..+ .+.+..+|+++|
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35899999999999998877777744 9999999999999999999983 333333 377899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhcCccHH---HHHhhhhcccCCChhhh
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDF---ADENIDSNVDVNPIVLS 144 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~---A~e~~~~al~~~P~~~~ 144 (338)
-++..+-|+++.++..||.+|-+.|+-.+|+.|+=.....-|++-+...-+.+-....+| ++.++..+--+.|. ++
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~-~~ 660 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN-QS 660 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc-HH
Confidence 999999999999999999999999999999999888899999987622222222233333 56666666666665 23
Q ss_pred hhh-----hhhhhcchHHHHHHh
Q 019586 145 KHR-----SVKKLFPTANAIKTQ 162 (338)
Q Consensus 145 K~~-----~~~kl~~~~~ai~~~ 162 (338)
|.+ -++....+++++...
T Consensus 661 kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHH
Confidence 332 244666777776654
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.34 E-value=7.9e-07 Score=65.74 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|++++|+..|++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 356788999999999999999999999999999999999999999999999999755
No 96
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.33 E-value=1.3e-05 Score=85.96 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=116.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------------- 55 (338)
++|++.+|+-+|.+||+.+|.+..+. +.+.+|.+.|++..|...|.++.+..|.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57899999999999999999998855 9999999999999999999995544441
Q ss_pred --------------------------------------------------------------------------------
Q 019586 56 -------------------------------------------------------------------------------- 55 (338)
Q Consensus 56 -------------------------------------------------------------------------------- 55 (338)
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence
Q ss_pred -----------------------------------------------CCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 019586 56 -----------------------------------------------GPRGVDSHLKAYERAQQMLKD-LESEMMNKGGD 87 (338)
Q Consensus 56 -----------------------------------------------~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~ 87 (338)
..|.+.+|+..|...+...+. +...|+.+|.+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 035888999999888776654 45689999999
Q ss_pred HHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 88 RVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 88 l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
|+.+|.+++|+.+|.++|.++|.+.. .+++++.++|..+.|.+.+.....+++.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~ 515 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR 515 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence 99999999999999999999999887 4455578899999998888776544543
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.32 E-value=7.5e-06 Score=81.86 Aligned_cols=112 Identities=9% Similarity=-0.031 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC---------CCC-----CHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD---------GPR-----GVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d---------~lg-----~~deA 63 (338)
+.|++++|...+++.++..|+++..+ -++.+|..+|+|++|+..+.++... .+. ..+ ..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46889999999999999999988866 8899999999999888888884422 111 011 22333
Q ss_pred HHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 64 LKAYERAQQMLK----DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 64 i~~yekAL~l~P----d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
...+.++.+..| +.+..+..+|..+...|++++|...++++++..|++..
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 457777888788 58899999999999999999999999999999998874
No 98
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=7e-06 Score=80.11 Aligned_cols=139 Identities=11% Similarity=-0.012 Sum_probs=104.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcCC----------CCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVADG----------PRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d~----------lg~~deAi~~ye 68 (338)
..+.+.|+..|.+.+...|.+..+. ..+.++..++++++|.++|+.+. |.+.++ -++.+-|+.+|+
T Consensus 269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence 3456778888888888888777755 88889999999999999998843 333332 468888999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---c---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---I---LPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~---l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+.+++.-..++.+.|+|.+.+..++++-++.+|++|+...-+... + ++.+.-..|....|...+..++..||.
T Consensus 349 RiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 349 RILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 999999889999999999999999999999999998877543322 2 233344556666666667666666665
No 99
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=1.4e-05 Score=67.52 Aligned_cols=83 Identities=22% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC--
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-- 76 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-- 76 (338)
.|+.++|+.+|++|++...+... ++ ++|.+|..+|++++ |+..+++++.-.|+
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~de---------------------A~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDE---------------------ALALLEEALEEFPDDE 72 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHH---------------------HHHHHHHHHHHCCCcc
Confidence 58888889999988887665543 33 88888888888855 45555557777787
Q ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 77 -LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 77 -~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.......++.++...|++++|+.++-.++.
T Consensus 73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888899999999999999999877764
No 100
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.1e-06 Score=80.39 Aligned_cols=84 Identities=20% Similarity=0.212 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
.+|..||.+|.+||.++|..+.+| |.+.||++..+| +.......+|+++.|+...+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~---------------------~~v~~dcrralql~~N~vk~h~ 82 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW---------------------EPVEEDCRRALQLDPNLVKAHY 82 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh---------------------hhhhhhHHHHHhcChHHHHHHH
Confidence 468999999999999999999988 999999999999 5566777789999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
.+|.+++....|++|+.+++++..+-
T Consensus 83 flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 83 FLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999996553
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.26 E-value=5.1e-06 Score=62.22 Aligned_cols=64 Identities=30% Similarity=0.489 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
++.++|++|+.++++++.++|++...+ .+|.+|..+|++ ++|+..|+++++..|+.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~---------------------~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY---------------------EEALEDLERALELSPDDPD 64 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH---------------------HHHHHHHHHHHHHCCCcHH
Confidence 357899999999999999999999977 999999999999 5556666668889998887
Q ss_pred HHHHHH
Q 019586 80 EMMNKG 85 (338)
Q Consensus 80 a~~nLG 85 (338)
+...+.
T Consensus 65 ~~~~~a 70 (73)
T PF13371_consen 65 ARALRA 70 (73)
T ss_pred HHHHHH
Confidence 765443
No 102
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.25 E-value=6.5e-06 Score=82.29 Aligned_cols=128 Identities=12% Similarity=0.007 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhCC----CCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC------------CCCCHHHHHHHHH
Q 019586 9 AEDAYRRALSIAP----DNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD------------GPRGVDSHLKAYE 68 (338)
Q Consensus 9 Ai~~y~kALeldP----d~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d------------~lg~~deAi~~ye 68 (338)
++..+.++....| ++...+ .+|..+...|++++|+..+++. .|++.. ..++.+.+++.++
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 3446666777677 366655 9999999999999999999993 455442 1467899999999
Q ss_pred HHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHH--HHHccCCCCcc--cccchhhhcCccHHHHHhhhhcc
Q 019586 69 RAQQMLKDLE--SEMMNKGGDRVEQSRLFDAFLGSS--SIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNV 136 (338)
Q Consensus 69 kAL~l~Pd~~--~a~~nLG~~l~~lGr~~eAi~~ye--kALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al 136 (338)
++++..|+++ ..+..+|.+++..|++++|..+|+ .+++..|+... .++.+....++.+.+.+.+..++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999 889999999999999999999999 68888887654 44555677787777777666543
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.8e-05 Score=77.08 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh--CcCCcC-------------------------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV--KPAVAD------------------------- 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~--~p~~~d------------------------- 55 (338)
.+.++|++.|-..++.+|...+++ .||+.|++.|..|.||...+.+ .|+.+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456889999999999999888877 9999999999999999888773 333332
Q ss_pred ------------------------CCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 56 ------------------------GPRGVDSHLKAYERAQQMLKDLE-----SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 56 ------------------------~lg~~deAi~~yekAL~l~Pd~~-----~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.-.+|++|+...++...+.++.- ..|--|+..+....+++.|+..+.+|++
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 13478888888888888877643 3355578888888888888888888888
Q ss_pred cCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586 107 PQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS 144 (338)
Q Consensus 107 l~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~ 144 (338)
.+|.+.. +++.+...+|..+.|.+.+...+..||...+
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 8888765 6667777888888888888888888887665
No 104
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=78.86 Aligned_cols=138 Identities=15% Similarity=0.050 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC----------CCCCHHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD----------GPRGVDSHLKAYER 69 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d----------~lg~~deAi~~yek 69 (338)
+++++|.++|+.+++++|.+.++. .+|.-|..-++.+-|+.+|+++..- .++ ..+++|-++.+|++
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 456666666666666666666644 5555555666666666666663321 111 13466666666666
Q ss_pred HHHhCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586 70 AQQMLK--D-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 70 AL~l~P--d-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
|+..-- + -+++|||+|.+....|++.-|.+||+-+|.-+|++.+.+.+ +..+.|.-..|...+..+-.+.|.
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 665432 2 23556666666666666666666666666666666653332 245555555566555555555554
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.4e-06 Score=84.14 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-------------HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-------------NLGICLMKQGRIGEAKETLRRVKPAVAD--------------- 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-------------nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------- 55 (338)
.+.+.|+..|++++.++|++.+.. ..|+-..+.|+|..|.+.|..++..+|+
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 467899999999999999887622 7888899999999999999995444443
Q ss_pred --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
.+|+..+|+...+.|+.|+|.+..+|...|.+++.+++|++|++.|+++++..-.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 2889999999999999999999999999999999999999999999999988766
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=1e-05 Score=64.81 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.+.+|..+..+|++ ++|+..|+++++..|++ +.+++.+|.++...|++++|+.+|+
T Consensus 5 ~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 63 (119)
T TIGR02795 5 YYDAALLVLKAGDY---------------------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL 63 (119)
T ss_pred HHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45888888999888 55555566688888876 5789999999999999999999999
Q ss_pred HHHccCCCCcc------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 103 SIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 103 kALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+++...|.+.. .++.+....+..+.+...+...+...|.
T Consensus 64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999998643 1112233445555555555555444443
No 107
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=8.7e-06 Score=71.61 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|++++|+.+|++++++.|+. ..+++++|.++..+|++++|+.+|++++.+.|.+..
T Consensus 48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 589999999999999988764 468999999999999999999999999999998765
No 108
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.22 E-value=4e-06 Score=82.25 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.|++..|+..|..|++.+|++..++ ..|.+|..+|+- ..|+..+.+.|++.||+..+.
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks---------------------k~al~Dl~rVlelKpDF~~AR 109 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS---------------------KAALQDLSRVLELKPDFMAAR 109 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC---------------------ccchhhHHHHHhcCccHHHHH
Confidence 3566677777777777777666644 777777777666 677888888999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccch---------------hhhcCccHHHHHhhhhcccCCChhh
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTT---------------NAIKTRDDFADENIDSNVDVNPIVL 143 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l---------------~~~~~~~~~A~e~~~~al~~~P~~~ 143 (338)
...|.+++++|.+++|+..|...|+-+|.+.. ....+ ....|.+.-+++.+..-+.+.|...
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999997654 11111 2345566667777777777777654
Q ss_pred h
Q 019586 144 S 144 (338)
Q Consensus 144 ~ 144 (338)
+
T Consensus 190 ~ 190 (504)
T KOG0624|consen 190 S 190 (504)
T ss_pred H
Confidence 4
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.20 E-value=1.1e-05 Score=70.55 Aligned_cols=84 Identities=17% Similarity=-0.003 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.++.++...+.-.+|..++.... .....|++++|+..|++|+.+.|+. +.+|.++|.++...|++++|+.+|+++
T Consensus 21 ~l~~~~~~~~~~~~a~~~~~~g~--~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 21 ILLRILPTTSGEKEAFTYYRDGM--SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhHhccCCchhHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555554444411 1113588999999999999998763 468999999999999999999999999
Q ss_pred HccCCCCcc
Q 019586 105 WQPQPCKDH 113 (338)
Q Consensus 105 Lkl~P~~~~ 113 (338)
+.++|....
T Consensus 99 l~~~~~~~~ 107 (168)
T CHL00033 99 LERNPFLPQ 107 (168)
T ss_pred HHhCcCcHH
Confidence 999998766
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.20 E-value=1.1e-05 Score=77.45 Aligned_cols=138 Identities=10% Similarity=-0.109 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------CCCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV---KPAVAD-------------GPRGVDS 62 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~lg~~de 62 (338)
.|++++|...|.++....|.+.. .+..|.++...|++++|+..++++ .|.+.. ..+....
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~ 98 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDH 98 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchh
Confidence 46788889999999998886544 227899999999999999999993 444431 1344555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCC
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVN 139 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~ 139 (338)
+...+.......|....++..+|.++..+|++++|+..++++++++|.++. .++.+....++.+.+...+...+...
T Consensus 99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 99 VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 555555544566777788889999999999999999999999999999876 33444667888888988888887766
Q ss_pred C
Q 019586 140 P 140 (338)
Q Consensus 140 P 140 (338)
|
T Consensus 179 ~ 179 (355)
T cd05804 179 D 179 (355)
T ss_pred C
Confidence 5
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=1.5e-05 Score=80.71 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|++++|+..++..++..|+++.++ -.|.++...++..+|++.++++...+|. ..|++.+|+..+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 4667777777777777778777766 7777788888876666666663333333 1445555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
+.+.-+|+++..|..|+.+|-.+|+..+|...+-....
T Consensus 399 ~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 399 RYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 55555555555555555555555555555555544433
No 112
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.18 E-value=5.2e-06 Score=89.47 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcCC----------CCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVADG----------PRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d~----------lg~~deAi~~ye 68 (338)
.+.++.|+.+|.++|..+|.+..+- .+|.|+...|+|.+|+..|.++.. .+++. +|+|-.|++.|+
T Consensus 625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999988755 999999999999999999999433 34442 789999999999
Q ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586 69 RAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT 118 (338)
Q Consensus 69 kAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l 118 (338)
.+++.- .+...++..||.++++.|++.+|..+...|+.+.|.++.+..++
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999864 46789999999999999999999999999999999998855443
No 113
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.14 E-value=7.3e-06 Score=84.65 Aligned_cols=136 Identities=14% Similarity=0.037 Sum_probs=104.1
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC---------
Q 019586 2 QQNNYIEAEDAYRRALSI--------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD--------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d--------- 55 (338)
.+|+|+.|+..|++|+.+ .|.-.... ++|.+|+.+++|.+|+..|+++. +.++.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 479999999999999998 44444455 69999999999999999999932 22222
Q ss_pred ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC---Ccc-------
Q 019586 56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC---KDH------- 113 (338)
Q Consensus 56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~---~~~------- 113 (338)
..|++++|..++++|++|- |+.+..+.+++.++..++++++|+..|++++++--+ ..+
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 3789999999999999874 445577888999999999999999999998876431 111
Q ss_pred -cccchhhhcCccHHHHHhhhhccc
Q 019586 114 -ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 114 -~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
.++.+....|+...|.+.+..++.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 222235677777777777777653
No 114
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.13 E-value=3.5e-05 Score=83.98 Aligned_cols=162 Identities=13% Similarity=0.103 Sum_probs=116.6
Q ss_pred HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhC---cCCc-C---------CCCCHHHHHHHHHHHHHhCCCCH
Q 019586 13 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK---PAVA-D---------GPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 13 y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~-d---------~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
|--..-+.|.++. .|..+.+..++|++++|+..|+++. |.++ . ..|+.++|+.++++++.-.|...
T Consensus 23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~ 102 (822)
T PRK14574 23 FISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISS 102 (822)
T ss_pred HHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCH
Confidence 3334445788877 5599999999999999999999954 5553 1 37899999999999993333344
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhhhhhhhh------
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVLSKHRSV------ 149 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~------ 149 (338)
..+..+|.++..+|++++|+..|+++++.+|+++.++.. +....++.+.|.+.+...+..+|.........
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhc
Confidence 445555889999999999999999999999999874433 25567888888899999888888844431111
Q ss_pred ----hhhcchHHHHHHhHhHHHHhhchhh
Q 019586 150 ----KKLFPTANAIKTQENFADENINANI 174 (338)
Q Consensus 150 ----~kl~~~~~ai~~~~~~~e~y~nlg~ 174 (338)
..+..+.+++...|+..+.+..+-.
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1233334455556666655554443
No 115
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=9.5e-06 Score=78.96 Aligned_cols=140 Identities=13% Similarity=0.040 Sum_probs=107.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------CCCCH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------GPRGV 60 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------~lg~~ 60 (338)
|..|-++.|+..|...+.. |.++. +. .|-.+|....+|++||..-+++.....+ .-.++
T Consensus 118 m~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 4567788888888887653 45555 45 8889999999999999998874333322 24588
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-ccc---chhhhcCccHHHHHhhhhcc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH-ILP---TTNAIKTRDDFADENIDSNV 136 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~-~l~---~l~~~~~~~~~A~e~~~~al 136 (338)
+.|+..+.+|++.+|....+-..+|.+++..|+|..|++.|+++++.||..-. ++. ......|+.+.....+...+
T Consensus 197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987543 222 22567777777776666666
Q ss_pred cCCCh
Q 019586 137 DVNPI 141 (338)
Q Consensus 137 ~~~P~ 141 (338)
..++.
T Consensus 277 ~~~~g 281 (389)
T COG2956 277 ETNTG 281 (389)
T ss_pred HccCC
Confidence 54443
No 116
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.08 E-value=3.6e-06 Score=55.54 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 99 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~ 99 (338)
+|++||+++|+++.+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999963
No 117
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.1e-05 Score=76.71 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--Cc---C--------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--VA---D--------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~~---d--------~lg~~deAi~~y 67 (338)
..|++.+|+..|+++.-+||+....- .+|..+...|+++.-......+... +. + .-.++..|+.+-
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 35889999999999999999888755 8888888888887766666552211 11 1 134788888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++|+++|++..++...|.++..+||.++|+-+|+.|..+.|..-.
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~ 369 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE 369 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence 8888888888888888888888888888888888888888886544
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=2.5e-05 Score=73.89 Aligned_cols=111 Identities=16% Similarity=0.002 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------~lg~~deAi~~ye 68 (338)
.|.|++|+++|+..++-||.+...+ ..-.++..+|+--+||+.+..... .+++ ..|++++|.-||+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 4789999999999999999999988 444466788998899998877433 3333 3789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr---~~eAi~~yekALkl~P~~~~ 113 (338)
+++=+.|-++-.+..+|.+++-+|- +.-|..+|.++++++|.+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 9999999999999999999887764 67899999999999996655
No 119
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=4.4e-05 Score=66.09 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE--- 78 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~--- 78 (338)
.|+.++|++.|.+||.+-|..+.+| |.+.+|..+|+. ++|+..+++|+++..+..
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~---------------------e~ALdDLn~AleLag~~trta 114 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD---------------------EEALDDLNKALELAGDQTRTA 114 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh---------------------HHHHHHHHHHHHhcCccchHH
Confidence 4678888888888888888888877 888888888888 566667777888875543
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 79 -SEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 79 -~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+|...|.+|..+|+.+.|...|+.+-++
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 56788899999999999999999887654
No 120
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.03 E-value=5.1e-05 Score=78.73 Aligned_cols=132 Identities=17% Similarity=0.072 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-----CHHHHHHHHHhhCcCCcC-------------------
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-----RIGEAKETLRRVKPAVAD------------------- 55 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-----~~dEAi~~~~k~~p~~~d------------------- 55 (338)
+++|++++|...|+..|..+|++..+| .|..|+.... ..+.-...|+.+...+|.
T Consensus 49 ~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 49 LKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHH
Confidence 357999999999999999999999988 6666663332 355556666653222221
Q ss_pred -----------------------------------------------------------------------------CCC
Q 019586 56 -----------------------------------------------------------------------------GPR 58 (338)
Q Consensus 56 -----------------------------------------------------------------------------~lg 58 (338)
..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 157
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhh
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENI 132 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~ 132 (338)
++++|+.+.++||+..|..++.|+..|.+|.+.|++.+|..+++.|..+|+.+--+-... ..+-++.+.|.+.+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876532221 23444445554433
No 121
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.00 E-value=4e-05 Score=66.70 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGG 86 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~ 86 (338)
+|+-|......|+|++|++.|+.+...+|-. .+++++|+..+++-|+++|.++ -+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 3355555555555555555555544444331 3455777778888999998876 66888999
Q ss_pred HHHHCCC---------------HHHHHHHHHHHHccCCCCcc
Q 019586 87 DRVEQSR---------------LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 87 ~l~~lGr---------------~~eAi~~yekALkl~P~~~~ 113 (338)
+++.+.. ..+|+..|++.++.-|++..
T Consensus 93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 9999877 88999999999999988754
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.99 E-value=0.00011 Score=73.36 Aligned_cols=191 Identities=8% Similarity=-0.032 Sum_probs=108.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~ 66 (338)
.|+|++|++...++-+..+ ++. .+ ..+.+...+|++++|..+|.++....++ ..|++++|+..
T Consensus 97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4777777766666544322 233 33 3344447777777777777774433332 16777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----------------------------------------
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ---------------------------------------- 106 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk---------------------------------------- 106 (338)
++++++..|+++.++..++.+|...|++++|+..+.+..+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 7777777777777777777777777777777733332221
Q ss_pred --cCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhh--hhhhhhhhhcchHH-------HHHHhHhHHHHhhch
Q 019586 107 --PQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVL--SKHRSVKKLFPTAN-------AIKTQENFADENINA 172 (338)
Q Consensus 107 --l~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~--~K~~~~~kl~~~~~-------ai~~~~~~~e~y~nl 172 (338)
..|+++. .++......++.+.|...+...+...|... .-...+ ......+ ..+..|+-.+.+.-+
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l-~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL-KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 1222333 222234566666667666666665433211 111111 0122222 334455555555555
Q ss_pred hhhhhHhhhhhhhhhhhhccccccCCC
Q 019586 173 NIVVNQTVLAQQRGVQQLAPFGNSWNI 199 (338)
Q Consensus 173 g~~~~~~~~~d~r~~~~~~~~~~~~~~ 199 (338)
|. ..+.+++|.++...+-..+.+
T Consensus 335 gr----l~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 335 GQ----LLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HH----HHHHCCCHHHHHHHHHHHHhc
Confidence 65 567788888887777777766
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=4.3e-05 Score=80.59 Aligned_cols=171 Identities=14% Similarity=0.042 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcC--C-----cCCCCCHHHHHHHHHHHHHhCC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPA--V-----ADGPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~--~-----~d~lg~~deAi~~yekAL~l~P 75 (338)
.|+..+|....++-++.+|+...++.||.+.....=|+.|.+++...+.. . +-..+++.++.++++..++++|
T Consensus 437 lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 437 LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 46777888888888884444444559999998888899999998884332 1 1235799999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCC--Chhhh--hhhh
Q 019586 76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVN--PIVLS--KHRS 148 (338)
Q Consensus 76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~--P~~~~--K~~~ 148 (338)
-....|+++|.+..+.+++..|..+|.+++.++|++.+...++ ..+.+....+...+..++.-| |.... --.-
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv 596 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV 596 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence 9999999999999999999999999999999999999855544 445555555555555555433 11111 1122
Q ss_pred hhhhcchHHHHHHhHhHHHHhhchh
Q 019586 149 VKKLFPTANAIKTQENFADENINAN 173 (338)
Q Consensus 149 ~~kl~~~~~ai~~~~~~~e~y~nlg 173 (338)
..++.....++...+...+...+..
T Consensus 597 svdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhcc
Confidence 3356666667777666665555444
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.97 E-value=0.00015 Score=68.07 Aligned_cols=112 Identities=9% Similarity=0.072 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-------------CC---
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKM----CNLGICLMKQGRIGEAKETLRR---VKPAVADG-------------PR--- 58 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a----~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-------------lg--- 58 (338)
+.|+|++|+..|++++...|..... +.+|.+|.++++|++|+..|++ ..|.++.. ++
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA 123 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence 4699999999999999999988774 4999999999999999999999 44555441 11
Q ss_pred ---------------CHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 59 ---------------GVDSHLKAYERAQQMLKDLESE-----------------MMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 59 ---------------~~deAi~~yekAL~l~Pd~~~a-----------------~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
...+|+..|++.++.-|+..-+ -+..|..|.+.|+|..|+.-++.+++
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 1357889999999999986521 14467789999999999999999999
Q ss_pred cCCCCcc
Q 019586 107 PQPCKDH 113 (338)
Q Consensus 107 l~P~~~~ 113 (338)
--|+.+.
T Consensus 204 ~Yp~t~~ 210 (243)
T PRK10866 204 DYPDTQA 210 (243)
T ss_pred HCCCCch
Confidence 9998765
No 125
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.96 E-value=0.00025 Score=74.46 Aligned_cols=174 Identities=12% Similarity=0.020 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLKAYER 69 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~~yek 69 (338)
.|+..+|...+.+|++.+|++-+.| .---+.....+++.|...|.++....+. .++..++|+..+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 4788899999999999999988877 3344556778899999999884433322 38899999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhhh
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKH 146 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~ 146 (338)
||+.-|++...|+.+|.++..+++.+.|...|...++.-|.... .++.+.-+.+..--|...++.+...||....-.
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW 756 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence 99999999999999999999999999999999999999999876 333333445555557778888888888744322
Q ss_pred ----hhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 147 ----RSVKKLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 147 ----~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
+.=........|-....+-++-+.+-|++-
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 222233333444445555556666666644
No 126
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.93 E-value=7.3e-06 Score=82.97 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
-++|+.|+..|.+||+++|+.+.++ +.+.++.+.+.| ..|+..+.+||+++|....+|
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~---------------------~~Al~Da~kaie~dP~~~K~Y 75 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF---------------------GGALHDALKAIELDPTYIKAY 75 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechh---------------------hhHHHHHHhhhhcCchhhhee
Confidence 4679999999999999999999988 999999999999 677777888999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
+..|.+...++++.+|+..|++...+.|+.+..
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 999999999999999999999999999998873
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=9.8e-05 Score=74.28 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYER 69 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yek 69 (338)
.+++++|+..|++..+.+|+ ...-++.++...++-.+|+..+.+.....+. ..++++.|+.+.++
T Consensus 182 t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 36799999999999998875 2347888888899999999999884443332 37799999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
|+++.|+.-..|+.|+.+|..+|+++.|+..+..+
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999877654
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=5.5e-05 Score=79.85 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM 82 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~ 82 (338)
++|+++..+++.+++++|-....| ++|.|..+.+++ ..|.++|.+++.++|++.++|+
T Consensus 499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~---------------------q~av~aF~rcvtL~Pd~~eaWn 557 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE---------------------QAAVKAFHRCVTLEPDNAEAWN 557 (777)
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh---------------------HHHHHHHHHHhhcCCCchhhhh
Confidence 445555555555555555444422 555555555555 7788888889999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhh
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDS 134 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~ 134 (338)
|+..+|...|+..+|..++.+|++.+-.+..+..+ +.-..+..+.+...+..
T Consensus 558 Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 558 NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999999999999999999665553322 23444555555554444
No 129
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.1e-05 Score=53.22 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHH
Q 019586 12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKE 44 (338)
Q Consensus 12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~ 44 (338)
+|++||+++|+++.+| +||.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999988 99999999999999863
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=7.8e-05 Score=81.49 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCc----------------C------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVA----------------D------ 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~----------------d------ 55 (338)
..+++++|+..++.+++..|+...+| .+|.++...+++.+|... ++ .+... .
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~ 120 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR 120 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence 46899999999999999999999966 999999999998877666 31 11111 1
Q ss_pred -------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 56 -------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 56 -------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+|++++|...|+++++++|+++.+++++|..|... ++++|+..+.+|++.
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 258999999999999999999999999999999988 888888888887765
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=4.5e-05 Score=82.68 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+++..|+..|+.|++.+|.+...|..+|.+|...|+|.-|+..|.+|..++|.+.-
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 468999999999999999999999999999999999999999999999999998643
No 132
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=8.6e-05 Score=75.16 Aligned_cols=113 Identities=12% Similarity=0.007 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcC--CHHHHHHHHHhhCcCC---c----------CCCCCHHHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQG--RIGEAKETLRRVKPAV---A----------DGPRGVDSH 63 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G--~~dEAi~~~~k~~p~~---~----------d~lg~~deA 63 (338)
|+.|+++.|++.+.-.-+.+..... +.||...+..+| ++..|..+-..+...+ + -.-|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 3456666666665444333332222 226655555533 4555555554421111 0 024566666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
...|++|+.-+....++++|.|..+..+|++++|+.||-+.-.+--++.+
T Consensus 510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence 66666666666666666666666666666666666666554444444444
No 133
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.84 E-value=2.1e-05 Score=50.75 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 134
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.79 E-value=4.1e-05 Score=48.97 Aligned_cols=34 Identities=9% Similarity=-0.027 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999975
No 135
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.78 E-value=0.00019 Score=76.20 Aligned_cols=98 Identities=10% Similarity=-0.104 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhh
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDS 134 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~ 134 (338)
+..++|..|+.+|-.+.|-.+..|+..|.++...|.+.||..+|..|+.++|++..+...+ ....|....+..
T Consensus 664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~---- 739 (799)
T KOG4162|consen 664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK---- 739 (799)
T ss_pred CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH----
Confidence 3667777788888888888888888888888888888888888888888888888733222 222332222211
Q ss_pred cccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586 135 NVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVV 176 (338)
Q Consensus 135 al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~ 176 (338)
-.-...++...|.+.++++++|-+.
T Consensus 740 -----------------~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 740 -----------------RSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred -----------------HHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 1122456777888888999998865
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=1.7e-05 Score=61.63 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHh
Q 019586 57 PRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADEN 131 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~ 131 (338)
.|+++.|+..|+++++..|. ....++.+|.+|+.+|+|++|+..+++ ++.+|.+.. +++......++.+.|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46789999999999999995 466788899999999999999999999 778776644 223334455555555544
Q ss_pred h
Q 019586 132 I 132 (338)
Q Consensus 132 ~ 132 (338)
+
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.00017 Score=73.31 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS 92 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG 92 (338)
.|..+..+...|++++|...++.+. |+++. ..++.++|++.+++++.++|+.+..++++|.+|++.|
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 4488888899999999999999954 44444 3789999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhc
Q 019586 93 RLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSN 135 (338)
Q Consensus 93 r~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~a 135 (338)
++.+|+..+...+.-+|+++..+..+ ....+....+.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999999999999999843332 34445444444444333
No 138
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.69 E-value=6.8e-05 Score=76.03 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=59.7
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586 73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P 140 (338)
.+|+++.+|+|+|.+|+.+|+|++|+.+|+++++++|+++. +++......++.+.|.+.+..++...+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 57999999999999999999999999999999999999873 334447788999999999999988633
No 139
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.66 E-value=0.0002 Score=65.12 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhC---cCCcCC------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVK---PAVADG------------------ 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d~------------------ 56 (338)
+.|+|.+|+..|++.+...|.... .+.+|.++.+.|+|++|+..|++.. |.++..
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence 578999999999999999887544 3399999999999999988888843 333321
Q ss_pred ------CCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 ------PRGVDSHLKAYERAQQMLKDLESE-----------------MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 ------lg~~deAi~~yekAL~l~Pd~~~a-----------------~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++...+|+..|+..++.-|+..-+ -+..|..|.+.|+|..|+..|+.+++--|+...
T Consensus 97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 123456777888888877775511 144577788888888888888888887777654
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.65 E-value=0.0004 Score=66.18 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc------cchhhhcCccHHHHHh
Q 019586 61 DSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL------PTTNAIKTRDDFADEN 131 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l------~~l~~~~~~~~~A~e~ 131 (338)
++|+..|++.++..|+. +.+++.+|.+|+..|++++|+.+|+++++..|+++... +.+....++.+.+...
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence 66677777799999987 58999999999999999999999999999999876611 2223344555555555
Q ss_pred hhhcccCCCh
Q 019586 132 IDSNVDVNPI 141 (338)
Q Consensus 132 ~~~al~~~P~ 141 (338)
+...+...|.
T Consensus 240 ~~~vi~~yP~ 249 (263)
T PRK10803 240 YQQVIKKYPG 249 (263)
T ss_pred HHHHHHHCcC
Confidence 5554444443
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.00025 Score=67.56 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------C
Q 019586 3 QNNYIEAEDAYRRALSIAPD--NNK----MC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------------G 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd--~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------~ 56 (338)
.|+|++|..+|.+|..+.-. +.. .| +.|.+|.+. ++++|+.+|+++...+.. .
T Consensus 48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 46788888888888776421 111 33 777777665 888999888884332211 2
Q ss_pred C-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 57 P-RGVDSHLKAYERAQQML--KDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 57 l-g~~deAi~~yekAL~l~--Pd~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
. +++++|+.+|++|+++- -+. ...+.++|.++..+|+|++|+..|+++....-.
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 4 79999999999999873 222 255678899999999999999999998775433
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.64 E-value=0.00018 Score=78.68 Aligned_cols=110 Identities=8% Similarity=0.006 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.|++++|...|+++++++|+++.+. |+|..|... ++++|+.++.++...+.+.. ++.++..++++.++.+|+..+..
T Consensus 129 ~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k-q~~~~~e~W~k~~~~~~~d~d~f 206 (906)
T PRK14720 129 LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK-QYVGIEEIWSKLVHYNSDDFDFF 206 (906)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHhcCcccchHH
Confidence 5889999999999999999999977 999999999 99999999999666555433 78889999999999999876552
Q ss_pred --------HHHH------------HHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 82 --------MNKG------------GDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 82 --------~nLG------------~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
..+| ..|.+.++|++++..++.+|+++|.+...
T Consensus 207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 2234 67889999999999999999999998763
No 143
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00036 Score=66.46 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC---
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--- 76 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd--- 76 (338)
|+|.+|+..|..-|...|+... .|=||.++..+|+| ++|...|..+++-.|+
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y---------------------~~Aa~~f~~~~k~~P~s~K 213 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY---------------------EDAAYIFARVVKDYPKSPK 213 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc---------------------hHHHHHHHHHHHhCCCCCC
Confidence 4455555555555555544322 22455555555555 6666666667776665
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
-+++++.||.++..+|+.++|...|+.+++.-|..+.
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 4588999999999999999999999999999998765
No 144
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00016 Score=72.07 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=82.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCc-CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVA-DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~-d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..|+.|.+.|+|..|+..|+++..... ...-+.++.. ++.+ -...+|+|++.++.++++|.+|+.+..++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~----~~~~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK----KAEA---LKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH----HHHH---HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 789999999999999999988221111 1000111111 1111 1246789999999999999999999999999
Q ss_pred cCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhhhhh
Q 019586 107 PQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKL 152 (338)
Q Consensus 107 l~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl 152 (338)
++|+|...+... ....+..+.|+..+..++.+.|.+.-...++.++
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999998855332 5677778888999999999999864444444333
No 145
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.61 E-value=0.00019 Score=69.28 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi~~ 66 (338)
.|++++|+..+.+. ++.+.. -.-.+|.+++|++.|.+.++....-+.| .-..+.+|.-.
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 46677777666553 455544 6667889999999999999885443333 13478999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 117 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~ 117 (338)
|++..+.-+..+..++.++.+++.+|+|++|...++.++..+|.++..+.+
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 999877767888999999999999999999999999999999998884443
No 146
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.00065 Score=62.15 Aligned_cols=126 Identities=15% Similarity=0.043 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHh-hCcCCcC-------------CCCCHHHHHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR-VKPAVAD-------------GPRGVDSHLKAYERA 70 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k-~~p~~~d-------------~lg~~deAi~~yekA 70 (338)
+.+.+.....+.+++.|....-+.||..+...|++.||...|++ +.-.++. ..+++..|...+++.
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44566666777788888888888999999999999999999999 3333433 377999999999999
Q ss_pred HHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHH
Q 019586 71 QQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADE 130 (338)
Q Consensus 71 L~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e 130 (338)
.+.+|. .+..+.-+|.+|..+|++.+|...|+.++..-|.-.. .+....+.+|+...+..
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 999987 4577888999999999999999999999999987544 33344456665555543
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.00018 Score=68.50 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHhCC--CCHH----HH-HHHHHHHHc-CCHHHHHHHHHhhCcCCcC-------------------C
Q 019586 4 NNYIEAEDAYRRALSIAP--DNNK----MC-NLGICLMKQ-GRIGEAKETLRRVKPAVAD-------------------G 56 (338)
Q Consensus 4 g~~eeAi~~y~kALeldP--d~a~----a~-nLG~~y~~~-G~~dEAi~~~~k~~p~~~d-------------------~ 56 (338)
.++++|+.+|++|+.+.- +... .+ ++|.+|... |++++|+.+|+++...+.. .
T Consensus 88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 478999999999999742 2222 33 999999998 9999999999994332211 2
Q ss_pred CCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKD-------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd-------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++|++|+..|++.....-+ ....++..+.+++..|++..|...|++....+|....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 88999999999999875322 1144577888999999999999999999999997655
No 148
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.53 E-value=0.00083 Score=70.66 Aligned_cols=113 Identities=18% Similarity=0.052 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye 68 (338)
+++.++|+.+++++|+..|+++..| -+|.++-.+++.+.|...|.. ..|..+. ..|+.-.|...++
T Consensus 664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 5788999999999999999999988 999999999999999999988 4454443 3678999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
++.--+|.++..|...-.+-+..|..+.|.....+||+--|.+..+.
T Consensus 744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495|consen 744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence 99999999999999999999999999999999999999999987643
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.53 E-value=0.0003 Score=60.16 Aligned_cols=70 Identities=31% Similarity=0.412 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~ 65 (338)
..|++++|+..|++++...|+... +. .||.++..+|++++|+..++.+.+.... ..|++++|+.
T Consensus 60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 469999999999999998876543 22 9999999999999999999884322111 3899999999
Q ss_pred HHHHHH
Q 019586 66 AYERAQ 71 (338)
Q Consensus 66 ~yekAL 71 (338)
.|++||
T Consensus 140 ~y~~Al 145 (145)
T PF09976_consen 140 AYQKAL 145 (145)
T ss_pred HHHHhC
Confidence 999985
No 150
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.53 E-value=0.00048 Score=62.25 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----HHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
-+++|+.-|++||.++|+..+++ ++|++|..++. ..+|..+| ++|..+|++|.+.+|++..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F--------------~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF--------------EKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH--------------HHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH--------------HHHHHHHHHHHhcCCCcHH
Confidence 37899999999999999999965 99999988765 45676777 6699999999999999887
Q ss_pred HHHHHHHH
Q 019586 80 EMMNKGGD 87 (338)
Q Consensus 80 a~~nLG~~ 87 (338)
.+..|..+
T Consensus 116 Y~ksLe~~ 123 (186)
T PF06552_consen 116 YRKSLEMA 123 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666554
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0003 Score=67.78 Aligned_cols=109 Identities=13% Similarity=0.014 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch------hhhcCccHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT------NAIKTRDDFADE 130 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l------~~~~~~~~~A~e 130 (338)
....+.-+.-++.-++.+|++.+.|..||.+|+.+|++..|...|.+|+++.|++++++..+ .........+..
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 44678889999999999999999999999999999999999999999999999999955432 122222333455
Q ss_pred hhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc
Q 019586 131 NIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAP 192 (338)
Q Consensus 131 ~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~ 192 (338)
.+..++..+|. -..+..-|+. ..|.+++..+++++
T Consensus 215 ll~~al~~D~~-----------------------~iral~lLA~----~afe~g~~~~A~~~ 249 (287)
T COG4235 215 LLRQALALDPA-----------------------NIRALSLLAF----AAFEQGDYAEAAAA 249 (287)
T ss_pred HHHHHHhcCCc-----------------------cHHHHHHHHH----HHHHcccHHHHHHH
Confidence 55555555554 3344444444 66777777766554
No 152
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.51 E-value=3e-05 Score=75.94 Aligned_cols=88 Identities=9% Similarity=0.057 Sum_probs=79.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
..|.+++||+.|..||+++|..+..| ..+.++.+++++ ..|+..|..|++++||....
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp---------------------~~airD~d~A~ein~Dsa~~ 184 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP---------------------NAAIRDCDFAIEINPDSAKG 184 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCC---------------------chhhhhhhhhhccCcccccc
Confidence 46789999999999999999999988 999999999998 55667777799999999999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
|-..|.+...+|++.+|...+..+.+++-+
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999888654
No 153
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.51 E-value=0.00025 Score=68.43 Aligned_cols=111 Identities=13% Similarity=-0.005 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcC--CHHHHHHHHHhhCcCCcC-------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQG--RIGEAKETLRRVKPAVAD-------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G--~~dEAi~~~~k~~p~~~d-------------~lg~~deAi 64 (338)
..++++.|.+.++.+-+++.| .... -.+++....| ++.+|...|+.+...++. .+|+|++|.
T Consensus 143 ~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 143 KMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 468999999999998887765 4444 4444555555 599999999996665544 389999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHccCCCCcc
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRL-FDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~-~eAi~~yekALkl~P~~~~ 113 (338)
..+++|+..+|.+++++.|+..+...+|+. +.+.+++......+|.++.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 999999999999999999999999999999 5566677888888998876
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.50 E-value=0.00037 Score=72.94 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-------------CCCHHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADG-------------PRGVDSHLKAYER 69 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-------------lg~~deAi~~yek 69 (338)
++|...+...++.++-.|.+++.. -.|..+..+|+-++|..+.+....++... -.+|++|++||+.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n 100 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN 100 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 567777777778888888888866 88888889999988888887744433331 3478888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+.+.|++...|.-|+..-.++|+++-........|++.|.+-.
T Consensus 101 Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 101 ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 88888888888888888888888888888888888888887654
No 155
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.49 E-value=0.00026 Score=76.97 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------CCCCHHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D----------GPRGVDSHLKAYER 69 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d----------~lg~~deAi~~yek 69 (338)
++...|...|-+++.+++..+.+| .||.+|+.--+...|..+|+++-..++ . ....++.|.....+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 346789999999999999999988 999999999899999999999544333 2 26689999988877
Q ss_pred HHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 70 AQQMLKDLE--SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 70 AL~l~Pd~~--~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+-+..|-.. ..|..+|..|.+.+++..|+.+|+.++..+|.+.. -+++.....|+..-+...++.+..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 777777654 55777999999999999999999999999999887 3344477888888899999888888996
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.48 E-value=0.00067 Score=70.54 Aligned_cols=123 Identities=10% Similarity=0.114 Sum_probs=95.0
Q ss_pred HhCCCCHHHH---HHHHHHHHcCC---HHHHHHHHHh---hCcCCcCC-------------C-----CCHHHHHHHHHHH
Q 019586 18 SIAPDNNKMC---NLGICLMKQGR---IGEAKETLRR---VKPAVADG-------------P-----RGVDSHLKAYERA 70 (338)
Q Consensus 18 eldPd~a~a~---nLG~~y~~~G~---~dEAi~~~~k---~~p~~~d~-------------l-----g~~deAi~~yekA 70 (338)
..-|.+..+| -.|..|...+. +..|+.+|++ +.|+++.+ + .+...+...++++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3346777766 77777776655 8899999999 45555431 1 1345667777777
Q ss_pred HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 71 QQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 71 L~l--~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
+.+ +|..+.+|..+|..+...|++++|..+|++|+.++|. .. .++.+....|+.+.|.+.+..++.++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 775 7778899999999999999999999999999999994 43 3334456789999999999999999987
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=97.43 E-value=0.00089 Score=68.16 Aligned_cols=80 Identities=6% Similarity=-0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHH---HhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHH
Q 019586 63 HLKAYERAQ---QMLKDLESEMMNKGGDRVEQ---------SRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDF 127 (338)
Q Consensus 63 Ai~~yekAL---~l~Pd~~~a~~nLG~~l~~l---------Gr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~ 127 (338)
|+..|.+|+ +++|+++.+|-.++.++... ....+|.++-++|++++|.++..+.. +....++.+.
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~ 356 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV 356 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence 455555666 66666666666666555432 12345555666666666666653222 2334444555
Q ss_pred HHHhhhhcccCCChh
Q 019586 128 ADENIDSNVDVNPIV 142 (338)
Q Consensus 128 A~e~~~~al~~~P~~ 142 (338)
+...++.++.++|+.
T Consensus 357 a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 357 SHILFEQAKIHSTDI 371 (458)
T ss_pred HHHHHHHHhhcCCcc
Confidence 566666666666653
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.43 E-value=0.00016 Score=72.54 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCC--------------------HHHHHHHHHh---hCcC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGR--------------------IGEAKETLRR---VKPA 52 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~-------a~nLG~~y~~~G~--------------------~dEAi~~~~k---~~p~ 52 (338)
.|.|++|+.+..+-+.+...-.+ +||||++|...|+ ++.|.++|+. +...
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888877776655332221 4488888877776 3445555544 1111
Q ss_pred CcC----------------CCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 53 VAD----------------GPRGVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 53 ~~d----------------~lg~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
..+ .+|+|+.|+..-+.-+++...+. .+|.|+|+++..+|+++.|+++|.+.+.+
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111 26788888877777777665444 56788888888888888888888776544
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0013 Score=55.65 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.|++|.++..+|+.++ |+..|++++....+. ..++..+|.+|..+|++++|+..++
T Consensus 4 ~~~~A~a~d~~G~~~~---------------------Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~ 62 (120)
T PF12688_consen 4 LYELAWAHDSLGREEE---------------------AIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLE 62 (120)
T ss_pred HHHHHHHHHhcCCHHH---------------------HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3588888988988855 555555577765433 4788999999999999999999999
Q ss_pred HHHccCCCCcc------cccchhhhcCccHHHHHhhhhcc
Q 019586 103 SIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNV 136 (338)
Q Consensus 103 kALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al 136 (338)
+++.-.|++.. .++......++.+.+.+.+...+
T Consensus 63 ~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 63 EALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998887433 11222355666777666554443
No 160
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.00076 Score=61.25 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGG 86 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~ 86 (338)
.|..|..+...|+|.+|+..|+++...+|.. .|++++|+..|++-++..|+++ .+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 5699999999999999999999976666552 7899999999999999998866 67888888
Q ss_pred HHHHCC-----------CHHHHHHHHHHHHccCCCCcc
Q 019586 87 DRVEQS-----------RLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 87 ~l~~lG-----------r~~eAi~~yekALkl~P~~~~ 113 (338)
+++.+. ...+|+..|+..++.-|+...
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y 125 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY 125 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence 866543 345899999999999998776
No 161
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.33 E-value=0.00052 Score=64.06 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+++.|.+.|.-.++++|.+.-++.|.|..++--||+.-|.+.+.+..+-+|+++-
T Consensus 113 ~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 113 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 44477777778899999999999999999999999999999999999999999886
No 162
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.32 E-value=0.00038 Score=52.81 Aligned_cols=47 Identities=36% Similarity=0.523 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHhC----CCCHH---HH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIA----PDNNK---MC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld----Pd~a~---a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
.+|+|++|+.+|++|+.+. +++.. .+ ++|.+|..+|++++|+.+|++
T Consensus 17 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 17 ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4689999999999999872 22222 23 999999999999888888866
No 163
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.31 E-value=0.00016 Score=71.14 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
..|+.|.++|+| ++||.||.+++.+.|.++..|.|.+.+|+++.+|..|...+..|+.+
T Consensus 102 E~GN~yFKQgKy---------------------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 102 ERGNTYFKQGKY---------------------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred Hhhhhhhhccch---------------------hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 567777777777 67777888899999999999999999999999999999999999998
Q ss_pred CCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhhh
Q 019586 108 QPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSVK 150 (338)
Q Consensus 108 ~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~ 150 (338)
+-.....++.. ....+....|.+.+...+.+.|.......+..
T Consensus 161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 87655544332 22344555677888888888898665444443
No 164
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.0013 Score=63.91 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d 55 (338)
..+|+.||.+..--.+.+|.+.-.. .||.||....+|.+|..+|+++...+|.
T Consensus 23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE 76 (459)
T ss_pred HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 3578899999999999999665544 9999999999999999999996655554
No 165
>PRK15331 chaperone protein SicA; Provisional
Probab=97.28 E-value=0.0018 Score=57.74 Aligned_cols=91 Identities=8% Similarity=-0.082 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.|.+|.-+..+|++++ |...|+-...++|.++..|+.||.++..+|+|++|+.+|..+.
T Consensus 40 iY~~Ay~~y~~Gk~~e---------------------A~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 40 LYAHAYEFYNQGRLDE---------------------AETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHHHHHHHHHCCCHHH---------------------HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777888855 5555555777999999999999999999999999999999999
Q ss_pred ccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586 106 QPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 106 kl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
.++++++. ..+......+....|...+..++.
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999887 233346677777788887777765
No 166
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.28 E-value=0.0013 Score=70.20 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc---CCcC------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKP---AVAD------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~d------------~lg~~deAi 64 (338)
+.|++++|+..|++.++. .|+...+..+-.++...|.+++|..+|+.... ..|+ ..|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 468999999999998874 57766666888889999999999999988432 2232 278999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhh
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDS 134 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~ 134 (338)
..++++ ...| +...|..|..++...|+++.|...+++.+++.|.+.. .+..+....|+.+.|.+.+..
T Consensus 483 ~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 483 AMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 998875 3445 4567999999999999999999999999999998765 333446778888887665544
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.28 E-value=0.0059 Score=50.10 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 58 RGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
++++.|+..+.+++...+. ....+..++..+...+++.+|...+..++...|.
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 3455555555555555554 3455555555555555555555555555555444
No 168
>PLN03077 Protein ECB2; Provisional
Probab=97.28 E-value=0.0026 Score=69.33 Aligned_cols=127 Identities=11% Similarity=0.061 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVK---PAVAD------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d------------~lg~~deAi 64 (338)
+.|+.++|+.+|++..+. .|+...+..+-.++...|++++|..+|+... ...|+ ..|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 468899999999988774 5776666666667888999999999998843 22333 278999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHH
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADE 130 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e 130 (338)
..+++. .+.|+ ...|..|-.++...|+.+.|....+++++++|++.. .+.++.+..|+++.+..
T Consensus 646 ~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 646 NFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 998875 45675 667777777788889999999999999999998877 33445667777777643
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0053 Score=63.99 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD------------------------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------------- 55 (338)
++++.++|+..+. .++++... .+-.|.+++++|+|++|...|+.+..++.+
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 4566777777777 34554443 337888888999999999999885433322
Q ss_pred -------------------CCCCHHHHHHHHHHHHHhC-------C--------CCHHHHHHHHHHHHHCCCHHHHHHHH
Q 019586 56 -------------------GPRGVDSHLKAYERAQQML-------K--------DLESEMMNKGGDRVEQSRLFDAFLGS 101 (338)
Q Consensus 56 -------------------~lg~~deAi~~yekAL~l~-------P--------d~~~a~~nLG~~l~~lGr~~eAi~~y 101 (338)
..|+|.+|++.+++|+++. . +...+..-|+.++..+|+-.+|...|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1579999999999985432 1 12245677888999999999999999
Q ss_pred HHHHccCCCCcc
Q 019586 102 SSIWQPQPCKDH 113 (338)
Q Consensus 102 ekALkl~P~~~~ 113 (338)
...++.+|.+..
T Consensus 248 ~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 248 VDIIKRNPADEP 259 (652)
T ss_pred HHHHHhcCCCch
Confidence 999999988765
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.25 E-value=0.0038 Score=58.64 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcC---------------C---HHHHHHHHHhhCcCCcCC---
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQG---------------R---IGEAKETLRRVKPAVADG--- 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G---------------~---~dEAi~~~~k~~p~~~d~--- 56 (338)
+.++|++|+..|++.++..|+++. .|.+|.++..++ + ..+|+..|+++...+|+.
T Consensus 81 ~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 81 KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 578999999999999999998876 348888865554 1 357888888877777762
Q ss_pred ---------------------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 57 ---------------------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 57 ---------------------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
.|.|..|+.-++.+++--|+.+ ++++.++.+|..+|..++|......
T Consensus 161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 161 TDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6799999999999999887755 8889999999999999999887654
No 171
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.23 E-value=0.0037 Score=66.67 Aligned_cols=169 Identities=9% Similarity=0.037 Sum_probs=114.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhh-----CcCCcC---------CCCCHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV-----KPAVAD---------GPRGVDSHLKAY 67 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~-----~p~~~d---------~lg~~deAi~~y 67 (338)
+.|++++|...|++..+ |+...+..+...|.+.|++++|+..|++. .|+... ..|.+++|...|
T Consensus 372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 57999999999998754 44333448999999999999999999992 232221 378999999999
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChh
Q 019586 68 ERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIV 142 (338)
Q Consensus 68 ekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~ 142 (338)
+...+..+- ....|..+...|.+.|++++|.+.+++. ...|+.. .+..+ ....+..+.+.......+...|..
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 999864322 3467888999999999999999999875 3344322 22221 345667777777777767777865
Q ss_pred hhhhhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586 143 LSKHRSVKKLFPTANAIKTQENFADENINANI 174 (338)
Q Consensus 143 ~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~ 174 (338)
......+-.++.....+....++.+.-...|+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 44443444444444444444444444444444
No 172
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0023 Score=60.71 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHh--------CCCCHHH----------H-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSI--------APDNNKM----------C-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 62 (338)
Q Consensus 2 q~g~~eeAi~~y~kALel--------dPd~a~a----------~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de 62 (338)
++|+|.||+..|+.||.. .|..+++ + |++.|+...|+| -+
T Consensus 190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~---------------------ye 248 (329)
T KOG0545|consen 190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY---------------------YE 248 (329)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH---------------------HH
Confidence 468999999999999874 3655542 2 999999999988 45
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++.....+...|.+..+|+..|.++...=+.++|.+.|.++|+++|....
T Consensus 249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 566666789999999999999999999999999999999999999997654
No 173
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.20 E-value=0.00087 Score=46.11 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 86 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~ 86 (338)
.+|.+|..+|++ ++|+.+|+++++.+|+++.+|..||.
T Consensus 6 ~la~~~~~~G~~---------------------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 6 ALARAYRRLGQP---------------------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHcCCH---------------------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 889999999999 66666777799999999999999885
No 174
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.00059 Score=68.64 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=82.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc-------CCcC------------C
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP-------AVAD------------G 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p-------~~~d------------~ 56 (338)
.|+|++||..-+.-+.+...+.+ ++ |||+||.-+|+++.|+++|.+... ...+ .
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 58999999999988888766555 44 999999999999999999998211 1111 1
Q ss_pred CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 57 PRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
+.++.+||.++.+-+.+... ...+++.||.++..+|..+.|+.+.+..+++.-
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34888999998887766533 336788999999999999999887776665533
No 175
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.19 E-value=0.00044 Score=47.62 Aligned_cols=37 Identities=5% Similarity=-0.158 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
+.+|+.+|.+|..+|++++|+.+|+++++.+|+++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 3678999999999999999999999999999999873
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.17 E-value=0.012 Score=48.28 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPD---NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSH 63 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deA 63 (338)
..|++++|+..|.+++..+|. ....+ .++..+...+++++|+..+.+.....+. ..+.++.|
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 468999999999999887773 33333 7777788999999999999994332222 25678999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+..+.+++...|.....+..++..+...|.+.+|...+.+++...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999998888889999888888899999999999999987
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.15 E-value=0.0071 Score=55.48 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHH-hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHH
Q 019586 2 QQNNYIEAEDAYRRALS-IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHL 64 (338)
Q Consensus 2 q~g~~eeAi~~y~kALe-ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi 64 (338)
..|++.||+.+|++++. +..+++... .++.+....+++.+|...++++...++. .+|.+.+|.
T Consensus 101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae 180 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE 180 (251)
T ss_pred HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence 36899999999999987 445555544 9999999999999999999995443333 388999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
..|+.++..-|+ +.+....|..+..+|+..+|...|....
T Consensus 181 safe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 181 SAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999999885 6677778999999999999988776544
No 178
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.13 E-value=0.0006 Score=43.66 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57999999999999999999999999999985
No 179
>PLN03077 Protein ECB2; Provisional
Probab=97.10 E-value=0.0055 Score=66.86 Aligned_cols=146 Identities=11% Similarity=0.049 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-----hCcCCcC---------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-----VKPAVAD---------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-----~~p~~~d---------~lg~~deAi~~ 66 (338)
+.|++++|...|... .| +...| .+...|...|+.++|+..|++ +.|+... ..|.+++|..+
T Consensus 536 k~G~~~~A~~~f~~~---~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 536 RCGRMNYAWNQFNSH---EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HcCCHHHHHHHHHhc---CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 579999999999986 44 44455 888999999999999999998 2333322 26899999999
Q ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586 67 YERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 67 yekAL~l---~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P 140 (338)
|+...+. .|+ ...|..+..+|.+.|++++|...+++. .+.|+... +..+ ....+..+.+.......+.++|
T Consensus 612 f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~-~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 612 FHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAV-WGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 9998854 353 478888999999999999999999885 45665322 2221 2234455556555556667778
Q ss_pred hhhhhhhhhhhhcc
Q 019586 141 IVLSKHRSVKKLFP 154 (338)
Q Consensus 141 ~~~~K~~~~~kl~~ 154 (338)
........+-.++.
T Consensus 689 ~~~~~y~ll~n~ya 702 (857)
T PLN03077 689 NSVGYYILLCNLYA 702 (857)
T ss_pred CCcchHHHHHHHHH
Confidence 75554444433433
No 180
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0046 Score=64.46 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc-----CC--cC-----CCCCHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP-----AV--AD-----GPRGVDSHLKAYE 68 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p-----~~--~d-----~lg~~deAi~~ye 68 (338)
..|+|++|+....+.+.+.|+...++ .--.|+..+++|++|+...++-.. .+ .. .++..++|+.+++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 46889999999999999999999965 666788999999999966666111 11 11 3889999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
-++++......-.|.+++++|+|++|++.|+..++-+-.+.+
T Consensus 104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 456777778888999999999999999999998876655443
No 181
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.0026 Score=60.97 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHcCCHHHHHHHHHhhC----cCCc----C-----------CCCCHH
Q 019586 3 QNNYIEAEDAYRRALSIAPD-NNKMC-NLGICLMKQGRIGEAKETLRRVK----PAVA----D-----------GPRGVD 61 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd-~a~a~-nLG~~y~~~G~~dEAi~~~~k~~----p~~~----d-----------~lg~~d 61 (338)
.|.|.-....|.+.++.+|. .+... .||.+-+..|+.+.|..+|+++. ..+. . ..+++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 35677788999999999854 44444 99999999999999999999521 1110 0 267999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+|...|.++++.+|.++.+-++.+.|++.+|+..+|++..+.++++.|...-
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 9999999999999999999999999999999999999999999999998654
No 182
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0014 Score=64.19 Aligned_cols=54 Identities=13% Similarity=-0.039 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+|+|..|+....+|+.++|.+..++++=+.+++++.++++|..+.+..++++-.
T Consensus 132 l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 132 LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 345588899999999999999999999999999999999999999998776543
No 183
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0091 Score=57.80 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--CCCCHHHH------------HH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--GPRGVDSH------------LK 65 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--~lg~~deA------------i~ 65 (338)
+..|++.+|...|..++...|.+.++- .|+.||...|+.++|...+..+-....+ ..+ .... +.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence 357899999999999999999998865 9999999999999999999884333322 122 1111 24
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
.+++.+.-+|++.++-+.++..|...|+.++|.+++-..++.+-..
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 5666677789999999999999999999999999998888776543
No 184
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.99 E-value=0.01 Score=50.59 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH-------H----HH--HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNN-------K----MC--NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER 69 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a-------~----a~--nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yek 69 (338)
.|-|++|...|++|+++.-..+ . .| .|+.++..+|+|++++..- +.|+.+|.+
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA--------------~~aL~YFNR 87 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA--------------DRALRYFNR 87 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------------HHHHHHHhh
Confidence 4779999999999999853221 1 23 8999999999999999887 669999999
Q ss_pred HHHhCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 70 AQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 70 AL~l~Pd~~~a~----~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
-=+++.+....| ++.+.++..+|+.++|+..|+.+-+
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999998866555 7789999999999999999998754
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.99 E-value=0.0047 Score=53.88 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586 39 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI 114 (338)
Q Consensus 39 ~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~ 114 (338)
|.+|...+++ |+|.+|++.|+....--|-.+ .+.+.||.+|++.|++++|+..+++.++++|.++.+
T Consensus 14 y~~a~~~l~~---------~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 14 YQEAQEALQK---------GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 4455555554 899999999999988877644 788999999999999999999999999999999873
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.95 E-value=0.013 Score=58.46 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=98.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC---------------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV--------------------------- 53 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~--------------------------- 53 (338)
.+|++..|..-..++++..|.+.... -.-.+|...|+|.+......++....
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 46889999999999999999999977 66678889999988887776521100
Q ss_pred cC----------------------------CCCCHHHH-------------------------------HHHHHHHHHhC
Q 019586 54 AD----------------------------GPRGVDSH-------------------------------LKAYERAQQML 74 (338)
Q Consensus 54 ~d----------------------------~lg~~deA-------------------------------i~~yekAL~l~ 74 (338)
.+ .+|++++| ++..++.++..
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 00 03344444 56666777777
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhh
Q 019586 75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDS 134 (338)
Q Consensus 75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~ 134 (338)
|+.+..++.||..+++.+.|.+|..+|+.+++..|.... .++......+....+.+....
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999999999999999999999999999999998655 334334566666666544443
No 187
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.94 E-value=0.0073 Score=62.91 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|++++|+.+..+||+..|...+.| ..|.+|...|++.+|...++.+...+.. ..|+.++|...+.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6899999999999999999999988 9999999999999999999985443332 3789999988887
Q ss_pred HHHHhCCCCH-------HHH--HHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 69 RAQQMLKDLE-------SEM--MNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 69 kAL~l~Pd~~-------~a~--~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.-.+-+-+.. -.| ..-|.+|..+|++..|+..|..+.+.
T Consensus 287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7655442111 133 44689999999999999999888765
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.0042 Score=57.52 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLE-----SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFA 128 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~-----~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A 128 (338)
.|+|++|..-|..||++-|..+ ..|.|.|.+++++++++.|+..+.++++++|..-..+.. ++......+.+
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence 5677889999999999999866 457889999999999999999999999999977553322 13344556678
Q ss_pred HHhhhhcccCCChhhhhhhhhhhhcc
Q 019586 129 DENIDSNVDVNPIVLSKHRSVKKLFP 154 (338)
Q Consensus 129 ~e~~~~al~~~P~~~~K~~~~~kl~~ 154 (338)
.+.+...+..+|...........|-+
T Consensus 188 leDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 188 LEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 88898999999987765544444333
No 189
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.91 E-value=0.0082 Score=60.54 Aligned_cols=108 Identities=12% Similarity=-0.053 Sum_probs=91.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eA 97 (338)
.|-.++...+++++|+..|+++...+++ ..++-.+|+..+.++++..|.....+...+..++..++++.|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 6667778889999999999998877777 267889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhc
Q 019586 98 FLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSN 135 (338)
Q Consensus 98 i~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~a 135 (338)
+.+.++++.+.|.+.. .++.+....++.+.|.-.++..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999876 3334456777777776555543
No 190
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0025 Score=63.31 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--C-----------cC------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--V-----------AD------------ 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~-----------~d------------ 55 (338)
..|+|++|...|+.+..-+.-.++.+ ||+-|+..+|.|.||.....++... . .+
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 46788888888888777554455555 8888888888888888777662110 0 00
Q ss_pred -----C---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 56 -----G---------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 56 -----~---------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
. .-.|.+||..|.+.+.-+|+....-.+++.+|+++.-|+-+-..+.-.|+.-|+.+-
T Consensus 149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 0 117788888888888888888777788888888888888888888777877777664
No 191
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.89 E-value=0.016 Score=65.22 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALS----IAPDNNKMCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 3 ~g~~eeAi~~y~kALe----ldPd~a~a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
.|++++|...|.+... +.|+...+..+-.+|.+.|++++|...|+.
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455555555555543 234322222444445555555555555554
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.87 E-value=0.02 Score=54.36 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=91.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-----------------
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRR---VKPAVADG----------------- 56 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------------- 56 (338)
++.|+|++|+..|+......|..+. ...++.++++.+++++|+...++ ..|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4679999999999999999887766 33999999999999999999998 56666652
Q ss_pred ----CCCHHHHHHHHHHHHHhCCCCHH---------------H--HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 ----PRGVDSHLKAYERAQQMLKDLES---------------E--MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 ----lg~~deAi~~yekAL~l~Pd~~~---------------a--~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.-..+|+..|+..|+-=|+..- + -+..|..|.+.|.+-.|+.-++.+++--|+...
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 23556778888888888887441 1 144678999999999999999999998777665
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.79 E-value=0.0026 Score=40.75 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
+++|.+|..+|++ ++|+.+|++|++++|+
T Consensus 5 ~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 5 YNLGNAYFQLGDY---------------------EEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHTT-H---------------------HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhCCc---------------------hHHHHHHHHHHHHCcC
Confidence 3999999999999 5556666668888886
No 194
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.76 E-value=0.008 Score=65.35 Aligned_cols=108 Identities=17% Similarity=0.047 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-----H-HHHHHHHHHcCCHHHHHHHHHhhCcC-------Cc------------CC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-----M-CNLGICLMKQGRIGEAKETLRRVKPA-------VA------------DG 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-----a-~nLG~~y~~~G~~dEAi~~~~k~~p~-------~~------------d~ 56 (338)
..|++++|..++++++...+.... . ..+|.++...|++++|...++++... .. ..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 468999999999999986554322 2 28999999999999999999883321 10 03
Q ss_pred CCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 57 PRGVDSHLKAYERAQQMLKD--------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd--------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
.|++++|...+++++.+-.. ....+..+|.++...|++++|..++++++.+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 79999999999999987322 123456789999999999999999999987644
No 195
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.71 E-value=0.0052 Score=64.61 Aligned_cols=106 Identities=14% Similarity=0.019 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
.|+-++|..+.+.++..++.... +|-+|.+++...+|++|+++|+.+....++ ++++++-....-.
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 58889999999999999998888 449999999999999999999996655554 3789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
+.+++.|..-..|..++.++...|.+..|....+...+..
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998877665554
No 196
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.68 E-value=0.022 Score=64.14 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~-Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|++++|...|+++.+.. +.+...|..+...|.+.|++++|+..|.+..+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555555555555443 22344555555555555555555555555443
No 197
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.0049 Score=53.61 Aligned_cols=79 Identities=13% Similarity=0.054 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc-------ccchhhhcCccHHHHH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI-------LPTTNAIKTRDDFADE 130 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~-------l~~l~~~~~~~~~A~e 130 (338)
|+.+.|++.|.++|.+.|..+.+|+|.+.++.-+|+.++|+..+.+++++.-..... .+.++..++..+.+..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 344777777788999999999999999999999999999999999999997665431 1223456677777776
Q ss_pred hhhhcc
Q 019586 131 NIDSNV 136 (338)
Q Consensus 131 ~~~~al 136 (338)
.+..+.
T Consensus 137 DFe~AA 142 (175)
T KOG4555|consen 137 DFEAAA 142 (175)
T ss_pred hHHHHH
Confidence 666553
No 198
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.63 E-value=0.0031 Score=37.33 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
.+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999998853
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.50 E-value=0.0078 Score=38.13 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
+.+|.+|..+|+++ +|+.+|+++++++|++
T Consensus 5 ~~lg~~~~~~~~~~---------------------~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 5 YYLGQAYYQLGNYE---------------------EAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHTT-HH---------------------HHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHhCCHH---------------------HHHHHHHHHHHHCcCC
Confidence 39999999999994 5555556688887764
No 200
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.49 E-value=0.0039 Score=41.16 Aligned_cols=29 Identities=14% Similarity=-0.086 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
+|.+||.+|..+|+|++|+.+|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999966543
No 201
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.46 E-value=0.044 Score=50.74 Aligned_cols=93 Identities=20% Similarity=0.142 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHh----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC
Q 019586 4 NNYIEAEDAYRRALSI----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 4 g~~eeAi~~y~kALel----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P 75 (338)
..+++|++.|.-|+-. ..+... .+ .+|++|..+|+-+....+++ .|+..|++|++-..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~--------------~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR--------------KALEFYEEAYENED 156 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH--------------HHHHHHHHHHHhCc
Confidence 3578999999888764 233333 33 99999999999777777764 59999999998763
Q ss_pred C------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 76 D------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 76 d------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
. ....++.+|.+..+.|++++|..+|.+++...-.
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 3 2366788999999999999999999999875433
No 202
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.015 Score=54.97 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHH------H-HHHHHHHHc-CCHHHHHHHHHhhCcCCcC------------------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKM------C-NLGICLMKQ-GRIGEAKETLRRVKPAVAD------------------ 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a------~-nLG~~y~~~-G~~dEAi~~~~k~~p~~~d------------------ 55 (338)
+.++.++|+.++++||++..+.... + .+|.+|-.- .+++.||.+|+++..-+..
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3567899999999999997765552 2 888888764 8899999999983321111
Q ss_pred -CCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 56 -GPRGVDSHLKAYERAQQMLKDLE-------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 56 -~lg~~deAi~~yekAL~l~Pd~~-------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+++|.+|+..|++..+-.-++. ..++.-|.+++-..+.-.|...+++...++|....
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 27899999999999888665544 23455677888889999999999999999998766
No 203
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.40 E-value=0.042 Score=46.49 Aligned_cols=49 Identities=14% Similarity=-0.032 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.|++++|+..+++++.++|.+..+|..+-.+|..+|+..+|+..|++..
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566888999999999999999999999999999999999999998864
No 204
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.39 E-value=0.014 Score=63.52 Aligned_cols=108 Identities=11% Similarity=0.002 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC----HH--H-HHHHHHHHHcCCHHHHHHHHHhhCc----C-C---c-C----------
Q 019586 2 QQNNYIEAEDAYRRALSIAPDN----NK--M-CNLGICLMKQGRIGEAKETLRRVKP----A-V---A-D---------- 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~----a~--a-~nLG~~y~~~G~~dEAi~~~~k~~p----~-~---~-d---------- 55 (338)
..|++++|+.+|++++.+.... .. . +++|.++..+|++++|...++++.. . . + .
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3689999999999999874422 11 1 2899999999999999999988211 1 1 1 0
Q ss_pred --CCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 56 --GPRGVDSHLKAYERAQQMLKD-----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~Pd-----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
..|++++|...+++++.+... ...++..+|.++...|++++|..++.+++.+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 268999999999999887432 245667799999999999999999999977644
No 205
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.23 E-value=0.0058 Score=38.40 Aligned_cols=33 Identities=6% Similarity=-0.090 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
++++++|.++..+|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999998864
No 206
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.22 E-value=0.016 Score=54.31 Aligned_cols=111 Identities=12% Similarity=0.045 Sum_probs=77.3
Q ss_pred HHHHHHHH--cCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 28 NLGICLMK--QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 28 nLG~~y~~--~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.+..++.. +.+-+.|.-.|++ -..-+.+|-+.-|.-.|.+++.+.|+.+++++.||.-+...|+|+.|.+.|...+
T Consensus 49 rlsqlL~~~~l~~eeRA~l~fER--GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 49 RMSQILASRALTDEERAQLLFER--GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHhccCChHHHHHHHHHh--cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 44444443 3334556666666 1223456667888888999999999999999999999999999999999999999
Q ss_pred ccCCCCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586 106 QPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNP 140 (338)
Q Consensus 106 kl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P 140 (338)
+++|...-..-+. ..--|+.+.|.+.+..-..-+|
T Consensus 127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 9999865421111 2234566666665555443344
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.024 Score=54.18 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.|+.+.-+.+.|+|.+|+..|.. -++--|+ .+.++|.||.+++.+|+|.+|...|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~---------------------fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQA---------------------FIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFA 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH---------------------HHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHH
Confidence 57888888888888666666655 4444444 55899999999999999999999999
Q ss_pred HHHccCCCCccc------ccchhhhcCccHHHHHhhhhccc
Q 019586 103 SIWQPQPCKDHI------LPTTNAIKTRDDFADENIDSNVD 137 (338)
Q Consensus 103 kALkl~P~~~~~------l~~l~~~~~~~~~A~e~~~~al~ 137 (338)
.+++-.|.++.. ++.+....+..+.|...+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999998762 22224556666666655555443
No 208
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=0.065 Score=54.04 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh------hCcCCcC--------------CCCCH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR------VKPAVAD--------------GPRGV 60 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k------~~p~~~d--------------~lg~~ 60 (338)
++|.++.|+.|-++|-+..|.-.+++ ..=......|+|+.|+++.+. +.++..+ .-.+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 46889999999999999999988877 333456789999999999987 2233332 13478
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
..|.....+++++.|++..+-..-+..|++.|+..++-..++.+++..|.-
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999863
No 209
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.022 Score=54.25 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=82.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHH-HhCCCCH----------HHHHHHHHHHHHCCCHH
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ-QMLKDLE----------SEMMNKGGDRVEQSRLF 95 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL-~l~Pd~~----------~a~~nLG~~l~~lGr~~ 95 (338)
+.-|+-+.++|+|.||+..|+ +|+.+++..+ +-.|..+ ..+.|+..+++..|+|-
T Consensus 182 ~q~GN~lfk~~~ykEA~~~Yr--------------eAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y 247 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYR--------------EAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY 247 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHH--------------HHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence 378889999999999999884 4777776543 2234433 45688999999999999
Q ss_pred HHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 96 DAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 96 eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
+++++...+|...|.+...+... .+.-|..+.|...+...+.++|...+.
T Consensus 248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999988744332 456777888999999999999986653
No 210
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.13 E-value=0.05 Score=54.51 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN 83 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~n 83 (338)
++..=++..++.++..|+++..+ .||..+.+.+.| .+|..+|+.|+...|+ ...|..
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w---------------------~kA~~~leaAl~~~~s-~~~~~~ 366 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW---------------------GKASEALEAALKLRPS-ASDYAE 366 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH---------------------HHHHHHHHHHHhcCCC-hhhHHH
Confidence 33444444444445555555444 555555555555 7777777889999885 777888
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHc
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekALk 106 (338)
+|.++-++|+..+|.++++.++.
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999884
No 211
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.08 E-value=0.0095 Score=56.11 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.++.+.|.+.|.+|+++-|+|...|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 467789999999999999999999999999999999999999999999999998765
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=0.063 Score=55.25 Aligned_cols=100 Identities=15% Similarity=0.038 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----------------CCCCHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----------------GPRGVDSHLK 65 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----------------~lg~~deAi~ 65 (338)
...+.|.+.+....+..|+..-+. ..|.++...|+.++|+..|+++...... .+.+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 456889999999999999888755 9999999999999999999984421111 1568888888
Q ss_pred HHHHHHHhCCCCHHH--HHHHHHHHHHCCCH-------HHHHHHHHHH
Q 019586 66 AYERAQQMLKDLESE--MMNKGGDRVEQSRL-------FDAFLGSSSI 104 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a--~~nLG~~l~~lGr~-------~eAi~~yekA 104 (338)
+|.+.++.+. |..+ .|..|.++...|+. ++|...|.++
T Consensus 327 ~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 327 YFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 8888888544 4433 34467788888888 6666666555
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.81 E-value=0.042 Score=56.67 Aligned_cols=100 Identities=18% Similarity=0.052 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------C------CcC------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--------A------VAD------------ 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~------~~d------------ 55 (338)
..+...-+++-++|++++|+.+++| -|+. -...-..||+.+|+++.. . ...
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 4567888999999999999999988 4433 122335666666666110 0 000
Q ss_pred ------------CCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 56 ------------GPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 56 ------------~lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.+|+.++|++.|+..++..|. +..++++|-.+|+.+++|.++...+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 268999999999999887765 4578899999999999998888777664
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.01 Score=56.05 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENID 133 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~ 133 (338)
..+|+.|+.+|.+||.++|..+..|.|.+.+|+++.+++.+....+++++++|+... .++.....+.....++..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 457799999999999999999999999999999999999999999999999999776 22332333444444544444
Q ss_pred hc
Q 019586 134 SN 135 (338)
Q Consensus 134 ~a 135 (338)
.+
T Consensus 103 ra 104 (284)
T KOG4642|consen 103 RA 104 (284)
T ss_pred HH
Confidence 43
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.77 E-value=0.022 Score=59.77 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
+|+...|++++.+|+...|.... .-+|+.++...|-. -.|-..+.+++.++-.-+-.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~---------------------~da~~~l~q~l~~~~sepl~ 678 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH---------------------LDATKLLLQALAINSSEPLT 678 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh---------------------ccHHHHHHHHHhhcccCchH
Confidence 35555666666666665554333 22666655555533 56777888899999888899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT 118 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l 118 (338)
++.+|.+++.+.+.+.|+++|+.|++++|+++.+...+
T Consensus 679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 679 FLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 99999999999999999999999999999998855443
No 216
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.70 E-value=0.024 Score=55.51 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 117 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~ 117 (338)
.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.||-+||.++|.+.+.+.+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 5788999999999999999999999999999999999999999999999999999885544
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.085 Score=52.37 Aligned_cols=102 Identities=16% Similarity=-0.033 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHcCCHHHHHHHHHhhCcC-CcCC----------------CCCHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMCN-LGICLMKQGRIGEAKETLRRVKPA-VADG----------------PRGVDSHL 64 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~n-LG~~y~~~G~~dEAi~~~~k~~p~-~~d~----------------lg~~deAi 64 (338)
.|++-+|...+++.+.-.|.+--+++ --.++...|+.+.-...++++.|. +++. .|-|++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 47777888888999999998887773 334667889999999999998887 4442 68999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
+...+|++++|.+..+...++-++...|++.++.+...+.
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999999999999999999999887653
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.034 Score=55.45 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcCCHHHHHHHHHhhC-cCCcCC------------CCCHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKETLRRVK-PAVADG------------PRGVDSHLKAY 67 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G~~dEAi~~~~k~~-p~~~d~------------lg~~deAi~~y 67 (338)
..+|+.|+.+++-.+.++....+-. =+|.|+..+|+|++|...|.-+. .+++++ +|.|.+|....
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 3579999999998886654433322 78999999999999999999854 344442 67888887666
Q ss_pred HHHH--------------HhC------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccch
Q 019586 68 ERAQ--------------QML------------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTT 118 (338)
Q Consensus 68 ekAL--------------~l~------------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l 118 (338)
++|- +++ .|..+-...|+.+++..-.|.+|++.|.++|.-+|+.-. ..+..
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC 194 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC 194 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence 5542 222 112233466777888888999999999999999987544 12222
Q ss_pred hhhcCccHHHHHhhhhcccCCCh
Q 019586 119 NAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 119 ~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
..+..-.+++.+.+.--+..-|.
T Consensus 195 yyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHhcchhhhHHHHHHHHHHhCCC
Confidence 45666667776665554444443
No 219
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.25 E-value=0.032 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
..++++||.+|..+|++++|+.++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999998763
No 220
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.19 E-value=0.042 Score=34.84 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh
Q 019586 27 CNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k 48 (338)
+.+|.+|..+|++++|+.+|++
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3899999999999554444433
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.06 E-value=0.12 Score=43.63 Aligned_cols=47 Identities=32% Similarity=0.391 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
..|++++|+.++++++.++|.+-.+| .+-.+|..+|+..+|+..|++
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 36899999999999999999999988 999999999999999999976
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=0.06 Score=55.96 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN 83 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~n 83 (338)
.+..|+..|.+++..-|+....+ |++.++++.+ | .|+.-.|+.....|++++|....+|+.
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W-----------------~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-W-----------------RGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-c-----------------cccHHHHHHhHHhhccCChHHHHHHHH
Confidence 46679999999999999888866 9988887764 3 234467888888999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|+.++.+++++.+|+.|...+....|.+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999888888885544
No 223
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.71 E-value=0.14 Score=41.00 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+..++++++.+|++..+.+.++..+...|++++|++.+-.+++.++....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~ 57 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED 57 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence 467889999999999999999999999999999999999999999987643
No 224
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.64 E-value=0.21 Score=51.50 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC----cC-----------CCCCHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV----AD-----------GPRGVDSHLK 65 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~----~d-----------~lg~~deAi~ 65 (338)
++++++....+|++-|+..|.+...| .+|..-..+|+++.|...|.-+.... |. ..|.++.|..
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 45678888888888888888888777 88888888888888888887733211 11 3678888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHH
Q 019586 66 AYERAQQMLKDLESEMMNKGG 86 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~ 86 (338)
.|++.|+..+... +|...+.
T Consensus 529 LYerlL~rt~h~k-vWisFA~ 548 (677)
T KOG1915|consen 529 LYERLLDRTQHVK-VWISFAK 548 (677)
T ss_pred HHHHHHHhcccch-HHHhHHH
Confidence 8888888776544 6655554
No 225
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=0.22 Score=51.48 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHhCCC----CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPD----NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLK 65 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd----~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~ 65 (338)
..+.+.+...|+.+|.+=|. ++..| -.+....++.++..|...+-.+....|. .+++++....
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 45778899999999999884 45555 8888889999999999999886555544 3789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
.|++-|+..|.+..+|...|..-..+|+.+.|...|.-|+...
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999988654
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.29 Score=47.15 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=73.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi~~ 66 (338)
-|++++|.....+.. +-+.. .--.|+.++.+++-|+..+++....+-+ .-+.+.+|.-+
T Consensus 121 ~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyi 195 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYI 195 (299)
T ss_pred CCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence 355666665554421 22222 2234556666677777766664333322 13467888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 117 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~ 117 (338)
|++.-+--|..+..++.++.+++.+|+|++|...++.+|.-++++++.+.+
T Consensus 196 feE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 196 FEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 888777556677888888889999999999999999999999988885544
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.48 E-value=0.19 Score=47.79 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
+|+-|......|+|++|+..| +......|-. ..+...++.++++.+++++|+...+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~f---------------------e~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~d 95 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYF---------------------EALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYID 95 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHH---------------------HHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 457777777777775555555 4455555543 4778899999999999999999999
Q ss_pred HHHccCCCCcc
Q 019586 103 SIWQPQPCKDH 113 (338)
Q Consensus 103 kALkl~P~~~~ 113 (338)
+.+++.|.++.
T Consensus 96 rFi~lyP~~~n 106 (254)
T COG4105 96 RFIRLYPTHPN 106 (254)
T ss_pred HHHHhCCCCCC
Confidence 99999999887
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=0.42 Score=44.05 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQMLKDLESE-MMNKGGDRVE 90 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~Pd~~~a-~~nLG~~l~~ 90 (338)
.++-.+...|++++|+..++.......| .++.+++|+..+.... ++++... -...|.++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHH
Confidence 6777778888888888888874433333 2667777777666542 2444443 3446888888
Q ss_pred CCCHHHHHHHHHHHHccCCCC
Q 019586 91 QSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 91 lGr~~eAi~~yekALkl~P~~ 111 (338)
.|+-++|+..|+++++..+..
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 888888888888888876443
No 229
>PRK10941 hypothetical protein; Provisional
Probab=94.16 E-value=0.24 Score=47.56 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
||=.+|...++| +.|+.+.++.+.+.|+.+.-+--.|.+|.++|.+..|...++..++.
T Consensus 186 nLK~~~~~~~~~---------------------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQM---------------------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcH---------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 667777777777 77777888899999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 019586 108 QPCKDH 113 (338)
Q Consensus 108 ~P~~~~ 113 (338)
.|+++.
T Consensus 245 ~P~dp~ 250 (269)
T PRK10941 245 CPEDPI 250 (269)
T ss_pred CCCchh
Confidence 999887
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.07 E-value=0.44 Score=45.51 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 84 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL 84 (338)
.++|...|.+|++-.+-....| ..|.+-...++ +.+-|...|+++++.-|.....|...
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~--------------------d~~~A~~Ife~glk~f~~~~~~~~~Y 76 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK--------------------DPKRARKIFERGLKKFPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------------HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 4667777777764433333444 55555444222 22458888888999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 85 GGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 85 G~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
...+...|+.+.|...|++++..-|...
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999999999998755543
No 231
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.06 E-value=0.015 Score=57.35 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.|.++.|+..|..||+++|..+..|...+.+++++++...|++.|..+++++|+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~ 183 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK 183 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence 567899999999999999999999999999999999999999999999999999876
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.05 E-value=0.08 Score=34.76 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 019586 28 NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k 48 (338)
+||.+|..+|+|++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999777777666
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.85 E-value=0.1 Score=52.31 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCc--C----------------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP---AVA--D---------------- 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~--d---------------- 55 (338)
+.|++++++|+.|+.+.-.+.+ .| .||..|....++++|.-+..++.. ... +
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 5688999999999998544433 34 999999999999999988877221 111 1
Q ss_pred --CCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 --GPRGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 --~lg~~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
.+|+.-.|.++.++|.++. +-....+.-+|.+|...|+.+.|+.-|+.|...--.
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 2788888888888888764 223455677899999999999999999998766443
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=0.4 Score=45.84 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc-----CCcC-------------CCC
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP-----AVAD-------------GPR 58 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p-----~~~d-------------~lg 58 (338)
++|++|..++.+|++-..++.. .| ..|..+.....|.|+..+|+++.- ..++ .--
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv 124 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV 124 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC
Confidence 4677777777777765444333 22 666667777788888888877322 2222 023
Q ss_pred CHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 59 GVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
+.++|+..|++++.+--... +.+-..+.+|.+..+|+||-..+.+
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 67777788877776643322 2234456677777777777766654
No 235
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.78 E-value=0.11 Score=37.77 Aligned_cols=35 Identities=6% Similarity=-0.065 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.++.++..++++|+|.+|..+.+.+|+++|++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 46788999999999999999999999999999977
No 236
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.73 E-value=0.34 Score=52.98 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--cCCcC-----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK--PAVAD-----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--p~~~d-----------~lg~~deAi~~ye 68 (338)
.+++..|.....+.++..|+..-+- --|.++.++|++++|..+++... +.+-+ .++++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4678999999999999999877766 77889999999999998888832 22211 2789999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++++..|. .+-++.+=.+|.+-+.|.+=-+.--+..+..|..+.
T Consensus 102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99999998 777677777788877776555444444456777665
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=0.34 Score=46.02 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHhCC--CCH----HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 4 NNYIEAEDAYRRALSIAP--DNN----KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 4 g~~eeAi~~y~kALeldP--d~a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
++|++|.++|.+|-.+.. .+. .++ ..+.++.+.|.-.+|...|-.+..-+ ...+..+|+.+++++|++--+
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHh
Confidence 578999999999866431 111 122 67777777776333333332211111 123668999999999998655
Q ss_pred CH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHccC
Q 019586 77 LE------SEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 77 ~~------~a~~nLG~~l~~l-Gr~~eAi~~yekALkl~ 108 (338)
-. .-|..+|.+|... .+++.|+.+|+.+-+.-
T Consensus 106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 43 3345688887755 89999999999886543
No 238
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.28 E-value=0.14 Score=50.28 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.|+.++|..+|+.|++++|++++.. .+|.+.-..+++ -+|-.+|-+|+.+.|.+.+++
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i---------------------v~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI---------------------VEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh---------------------HhhhhhhheeeeeCCCchHHH
Confidence 5778888888888888888888866 777776666666 455666667777778777777
Q ss_pred HHHHH
Q 019586 82 MNKGG 86 (338)
Q Consensus 82 ~nLG~ 86 (338)
.|...
T Consensus 188 vnR~R 192 (472)
T KOG3824|consen 188 VNRAR 192 (472)
T ss_pred hhhhc
Confidence 66544
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.14 E-value=0.068 Score=33.32 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCc
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVA 54 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~ 54 (338)
.+++|.+|..+|++++|+..|+++...+|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 35899999999999888777777544443
No 240
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=0.74 Score=44.41 Aligned_cols=109 Identities=12% Similarity=0.036 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----cCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMCNLGICLMK----QGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA 66 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~----~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ 66 (338)
.+++-|+...++...++.+ +....|+.++.+ .+++.+|..+|+.....++. .++++++|...
T Consensus 151 ~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 4567788888888887643 223345555543 45688999999996664433 38899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHccCCCCcc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG-SSSIWQPQPCKDH 113 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~-yekALkl~P~~~~ 113 (338)
++.|+.-++.+++.+.|+-.+-..+|+-.++..- ........|.++.
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999999999999999999999888765 5666677787766
No 241
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.66 Score=45.67 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhC----cCCcCC-CC-------------CHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK----PAVADG-PR-------------GVDS 62 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~----p~~~d~-lg-------------~~de 62 (338)
+.|+|++|+.-|..|++...-.+- +||++.|+...|+++.|+++...+. .++|+. .| -..-
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 568999999999999999776655 7899999999999999999887732 234441 11 1122
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 101 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~y 101 (338)
++..+. ++++-.+.++++.|+++.|.+.+
T Consensus 236 h~Sal~----------eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 236 HQSALV----------EAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HHHHHH----------HHhhhhhhhhhhcccHHHHHHHh
Confidence 222222 44455677899999999988765
No 242
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.62 E-value=0.1 Score=53.51 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhh
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDS 134 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~ 134 (338)
..++.|+..|.+||+++|+.+..+-+.+.++.+.+.|..|+..+.++++++|.....+-.. -...+....|...+..
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999876633211 1223333334444555
Q ss_pred cccCCCh
Q 019586 135 NVDVNPI 141 (338)
Q Consensus 135 al~~~P~ 141 (338)
...+.|.
T Consensus 98 ~~~l~Pn 104 (476)
T KOG0376|consen 98 VKKLAPN 104 (476)
T ss_pred hhhcCcC
Confidence 5555554
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=0.42 Score=44.05 Aligned_cols=76 Identities=25% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCc-CCcC-----------CCCCHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKP-AVAD-----------GPRGVDSHLKA 66 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p-~~~d-----------~lg~~deAi~~ 66 (338)
.|++++|+..++.++..-.|..- ..+|+.++..+|++++|+..+..+.. .+.. ..|+.++|...
T Consensus 102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~a 181 (207)
T COG2976 102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAA 181 (207)
T ss_pred hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHH
Confidence 58899999999999875443322 22999999999999999999988433 2222 48999999999
Q ss_pred HHHHHHhCCCCH
Q 019586 67 YERAQQMLKDLE 78 (338)
Q Consensus 67 yekAL~l~Pd~~ 78 (338)
|++|++..++.+
T Consensus 182 y~kAl~~~~s~~ 193 (207)
T COG2976 182 YEKALESDASPA 193 (207)
T ss_pred HHHHHHccCChH
Confidence 999999986544
No 244
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.13 E-value=1.5 Score=35.01 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC
Q 019586 9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV 53 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~ 53 (338)
.+..++++++.+|++..+. .+|..+...|++++|++.+-.+...+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4678899999999999855 99999999999988888887754443
No 245
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.95 E-value=1.2 Score=47.55 Aligned_cols=143 Identities=14% Similarity=0.109 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH----H-HHHHHHHHHHcCCHHHHHHHHHh--hCcCCcC--------------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNN----K-MCNLGICLMKQGRIGEAKETLRR--VKPAVAD-------------------- 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a----~-a~nLG~~y~~~G~~dEAi~~~~k--~~p~~~d-------------------- 55 (338)
.|+.+.|...|++|++..=... . +|+-|..-....+++.|..+.++ ..|..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 4667778888888877653222 2 33777777777778888887777 3443322
Q ss_pred ---------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc--ccccch------
Q 019586 56 ---------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD--HILPTT------ 118 (338)
Q Consensus 56 ---------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~--~~l~~l------ 118 (338)
..|-++.-...|++.|.+.=-.|..-.|.|..+.+...+++|++.|++.+.+-+--. +++..-
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 156667777889999999888888999999999999999999999999988865321 121110
Q ss_pred hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586 119 NAIKTRDDFADENIDSNVDVNPIVLSK 145 (338)
Q Consensus 119 ~~~~~~~~~A~e~~~~al~~~P~~~~K 145 (338)
.......+-+.+.+..++..-|....|
T Consensus 560 rygg~klEraRdLFEqaL~~Cpp~~aK 586 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGCPPEHAK 586 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 112222233566777777767754433
No 246
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=91.78 E-value=0.35 Score=44.94 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
|+.+|.+|+.+.|+.+..|+.||.++...|+.-+|+-+|-+++-..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 6889999999999999999999999999999999999998888553
No 247
>PRK10941 hypothetical protein; Provisional
Probab=91.71 E-value=0.97 Score=43.41 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=50.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
++.++++.|+.+.+..+.++|+++.-+ -+|.+|..+|.+ ..|...|+.-++..|+.+.
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~---------------------~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE---------------------HVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc---------------------HHHHHHHHHHHHhCCCchh
Confidence 357899999999999999999999866 899999999999 5555566667777777776
Q ss_pred HHHH
Q 019586 80 EMMN 83 (338)
Q Consensus 80 a~~n 83 (338)
+..-
T Consensus 251 a~~i 254 (269)
T PRK10941 251 SEMI 254 (269)
T ss_pred HHHH
Confidence 6543
No 248
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.44 E-value=1.8 Score=49.75 Aligned_cols=85 Identities=7% Similarity=-0.045 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cc---cchhhhcCccHHHHHh
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--IL---PTTNAIKTRDDFADEN 131 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l---~~l~~~~~~~~~A~e~ 131 (338)
-..+++|.++|++.++--.+....|..+|..++.+.+-++|...+.+||+.-|...+ .. +.+-.+.|..+-+...
T Consensus 1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH
Confidence 347788888888888876777888888898888888888888888999988888433 11 1122344444444555
Q ss_pred hhhcccCCCh
Q 019586 132 IDSNVDVNPI 141 (338)
Q Consensus 132 ~~~al~~~P~ 141 (338)
+.+-+.-.|.
T Consensus 1623 fEgll~ayPK 1632 (1710)
T KOG1070|consen 1623 FEGLLSAYPK 1632 (1710)
T ss_pred HHHHHhhCcc
Confidence 5554444443
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.37 E-value=1.1 Score=46.59 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH--HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC---C
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK--MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---D 76 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~--a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P---d 76 (338)
+|+.+|||+.|+..++..|.... .+ ||-.+|..+++|.++...+.+.....- ...|.-+|.+|+-.-. |
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-----pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-----PKSATICYTAALLKARAVGD 346 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-----CchHHHHHHHHHHHHHhhcc
Confidence 46666666666666665553222 22 666666666666666666655321110 1234444444442110 0
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 77 --LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 77 --~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+++-...|..-. -..|.+...+|++.||..+.
T Consensus 347 ~fs~e~a~rRGls~a----e~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 347 KFSPEAASRRGLSPA----EMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccCchhhhhcCCChh----HHHHHHHHHHHHHhCCCCch
Confidence 0111122221111 12377888999999998876
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.09 E-value=0.45 Score=48.97 Aligned_cols=53 Identities=25% Similarity=0.262 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVAD 55 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~-----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d 55 (338)
.|+.++|++.|++++........ .|.+|++++.+++|++|..+|.++.....+
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 68999999999999964433222 339999999999999999999997665555
No 251
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.05 E-value=3.6 Score=38.66 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHh-hCcCCcCC------------CC-------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRR-VKPAVADG------------PR------- 58 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k-~~p~~~d~------------lg------- 58 (338)
.++.+|..+|+++.+ ..++.++ +||.+|.. ..++.+|..+|++ +...++.. .|
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 456778888885433 3444533 88888776 4478888888888 22222211 11
Q ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586 59 -GVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 59 -~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P 109 (338)
+...|+.+|.+|-... ++.+.+++|.+|.. ..++.+|+.+|.++-+...
T Consensus 169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 3447888888887766 78888888877754 3477888888888877655
No 252
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=90.96 E-value=1.4 Score=42.16 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ES 79 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~ 79 (338)
++.+-|...|+.+++..|.+..+| .+...+...|+.+.|...|++ ++...|.. ..
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer---------------------~i~~l~~~~~~~~ 108 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER---------------------AISSLPKEKQSKK 108 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH---------------------HCCTSSCHHHCHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH---------------------HHHhcCchhHHHH
Confidence 455669999999999999999977 888899999999666666655 44444332 25
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
.|......-...|+++.....++++.++-|...
T Consensus 109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 109 IWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 666667777788899999999999988888744
No 253
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.88 E-value=0.48 Score=27.31 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh
Q 019586 27 CNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k 48 (338)
+++|.+|..+|++++|+..|++
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3899999999999666666655
No 254
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.74 E-value=0.33 Score=31.60 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 019586 28 NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k 48 (338)
+||.+|..+|++++|+.++++
T Consensus 7 ~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 7 NLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHhhhhcchhhHHHHH
Confidence 999999999999999998865
No 255
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.59 E-value=0.96 Score=41.97 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019586 9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD 87 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~ 87 (338)
|+.+|.+|+.+.|+++..| .||.++...|+.=+|+-+|-| ++-..--++.+..||...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~R---------------------sl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIR---------------------SLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHH---------------------HHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHH---------------------HHhcCCCcHHHHHHHHHH
Confidence 7899999999999999988 999999999999776666655 444443345666666665
Q ss_pred HHH
Q 019586 88 RVE 90 (338)
Q Consensus 88 l~~ 90 (338)
+.+
T Consensus 60 f~~ 62 (278)
T PF10373_consen 60 FEK 62 (278)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.56 E-value=0.88 Score=45.80 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhC---cC--CcC--------------CCCCHHHHHHHHHHHHHhCCC-----CH-----
Q 019586 28 NLGICLMKQGRIGEAKETLRRVK---PA--VAD--------------GPRGVDSHLKAYERAQQMLKD-----LE----- 78 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~---p~--~~d--------------~lg~~deAi~~yekAL~l~Pd-----~~----- 78 (338)
.+|.++..++.|+++++.|+++. .. ++. .+.++++|+....+|.++--. +.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 88999999999999999999932 12 221 156999999999999887533 22
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
-+++.++.+|..+|++-+|.++.+++.++.-...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 4568899999999999999999999888755443
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.53 E-value=2.4 Score=40.41 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCC----HH-HHHHHHHHHHcCCHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALSIAPDN----NK-MCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~----a~-a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
.|.++-|..++.++...++.. +. .+..+..+...|+..+|+..++.
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666666666666554211 11 22556666666666666666554
No 258
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.39 E-value=1.4 Score=48.52 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHH----------HHhCCCCHHHH-----------HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----C
Q 019586 3 QNNYIEAEDAYRRA----------LSIAPDNNKMC-----------NLGICLMKQGRIGEAKETLRRVKPAVAD-----G 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kA----------LeldPd~a~a~-----------nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~ 56 (338)
.++.+.|+++|+++ |.-+|...+.| =-|..+-..|+++.|+.+|..+...+.. .
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~ 950 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI 950 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee
Confidence 35678888888864 33345433333 3466778899999999999997766655 3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
+|+.++|....++ ..+-.+-|.||..|...|++.+|+..|-+|-.
T Consensus 951 qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8999999876665 44567778899999999999999988876543
No 259
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.10 E-value=2.3 Score=37.19 Aligned_cols=76 Identities=8% Similarity=0.079 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCCHHHH
Q 019586 20 APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ-MLKDL-ESEMMNKGGDRVEQSRLFDA 97 (338)
Q Consensus 20 dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~-l~Pd~-~~a~~nLG~~l~~lGr~~eA 97 (338)
++.-...+|+++++....+.++ ..+.+.+++..++ -.|+. -+..|.|+..+++.|+|+.|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~d------------------v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTED------------------VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred cchHHHHHHHHHHHHcccchHH------------------HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Confidence 3333335599999988777643 3678888888886 44443 36778899999999999999
Q ss_pred HHHHHHHHccCCCCcc
Q 019586 98 FLGSSSIWQPQPCKDH 113 (338)
Q Consensus 98 i~~yekALkl~P~~~~ 113 (338)
+.+....++.+|++.+
T Consensus 91 ~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 91 LRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHhhCCCcHH
Confidence 9999999999999987
No 260
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=1.2 Score=44.28 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 60 VDSHLKAYERAQQMLKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|..|+.+|.+.|...-.+ +..|.|.+.+.+.+|+|..|+....++++++|.+..
T Consensus 97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 366777778888876433 356899999999999999999999999999999876
No 261
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.67 E-value=0.42 Score=29.16 Aligned_cols=24 Identities=8% Similarity=-0.197 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.+++++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567899999999999999999876
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.34 E-value=2.9 Score=43.61 Aligned_cols=83 Identities=12% Similarity=-0.081 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 019586 10 EDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDR 88 (338)
Q Consensus 10 i~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l 88 (338)
...|++|+...+.+...| ++...-.+.+.+ .+--..|.+++..+|++++.|..-+...
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~---------------------~~v~ki~~~~l~~Hp~~~dLWI~aA~we 149 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTY---------------------GEVKKIFAAMLAKHPNNPDLWIYAAKWE 149 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcch---------------------hHHHHHHHHHHHhCCCCchhHHhhhhhH
Confidence 467888888888777766 443333333335 3445566667777788777777777776
Q ss_pred HHCCC-HHHHHHHHHHHHccCCCCcc
Q 019586 89 VEQSR-LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 89 ~~lGr-~~eAi~~yekALkl~P~~~~ 113 (338)
++.+. .+.|.+.|.++|+.+|+++.
T Consensus 150 fe~n~ni~saRalflrgLR~npdsp~ 175 (568)
T KOG2396|consen 150 FEINLNIESARALFLRGLRFNPDSPK 175 (568)
T ss_pred HhhccchHHHHHHHHHHhhcCCCChH
Confidence 66666 67777777788888777776
No 263
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.33 E-value=2.7 Score=48.47 Aligned_cols=134 Identities=10% Similarity=0.028 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQ 72 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~ 72 (338)
-+.-.+.|++|.++..-.-.+..|.-+|.+.+++++|.++|++....+.. .+.+-++|...+.+|++
T Consensus 1513 eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34556778888876533333338888888889999999988885544442 14455677788888888
Q ss_pred hCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCC
Q 019586 73 MLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVN 139 (338)
Q Consensus 73 l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~ 139 (338)
..|. +.+.....+..-++.|+-+.+...|+-.+.-.|.-..++. ..-.+.+.....+..+...+.+.
T Consensus 1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8887 6677777788888888888888888888888887555221 11223344455555665555433
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.02 E-value=2.7 Score=42.31 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 84 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL 84 (338)
..++|+.+|+++.+++|+....-|++.++...|.-.+.....+++.- .-+...-++-..-.-.+-..+-.+
T Consensus 241 ~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~---------~l~~llg~kg~~~~~~dYWd~ATl 311 (374)
T PF13281_consen 241 SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGV---------KLSSLLGRKGSLEKMQDYWDVATL 311 (374)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHH---------HHHHHHHhhccccccccHHHHHHH
Confidence 36899999999999998665555999999999986555444444110 000000011111111222334557
Q ss_pred HHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 85 G~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+..-.|++++|+.++++++++.|..-.
T Consensus 312 ~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 312 LEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 78888999999999999999999876544
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.90 E-value=2.7 Score=35.30 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=69.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-CCCHHHHHHHHHHHHHhCCC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC----NLGICLMKQGRIGEAKETLRRVKPAVADG-PRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~----nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-lg~~deAi~~yekAL~l~Pd 76 (338)
+.|++-+|++..+..+...++....| .-|.++..+..- -.+++. ..-.-.++.+|.++..+.|+
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-----------ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-----------TENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-----------ccCchHHHHHHHHhHHHHHHHhccChh
Confidence 57999999999999999988777532 556665444322 112221 11235689999999999999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+..++.||.-+--...|+++..-.+++|.+
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 9999999998877777788888887777765
No 266
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.71 E-value=1 Score=30.03 Aligned_cols=34 Identities=3% Similarity=-0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHH--HHHHHccCCCC
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLG--SSSIWQPQPCK 111 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~--yekALkl~P~~ 111 (338)
++.++.+|..+..+|++++|+.. |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 35788999999999999999999 44777777653
No 267
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.59 E-value=2.2 Score=44.42 Aligned_cols=99 Identities=12% Similarity=-0.002 Sum_probs=73.4
Q ss_pred HHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC----cC---CcC---------------CCCCHHHHHHHHHHHHH-
Q 019586 17 LSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK----PA---VAD---------------GPRGVDSHLKAYERAQQ- 72 (338)
Q Consensus 17 LeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~----p~---~~d---------------~lg~~deAi~~yekAL~- 72 (338)
+.+..+.+.+. -.+..++..|++..|.+.+...+ +. .+. .++.|.-++.+|.+|++
T Consensus 233 mn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N 312 (696)
T KOG2471|consen 233 MNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN 312 (696)
T ss_pred hhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence 33334455533 77888889999999999887721 11 111 36789999999999996
Q ss_pred --------hCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 73 --------MLKD---------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 73 --------l~Pd---------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+.|. .-+.+||.|..|+..||.-.|++||.++++.--.++.++
T Consensus 313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 1222 237789999999999999999999999998877777644
No 268
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.53 E-value=0.53 Score=31.92 Aligned_cols=30 Identities=13% Similarity=-0.029 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
++|..||.+.+..++|++|+..|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999874
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.95 E-value=9.5 Score=35.77 Aligned_cols=102 Identities=16% Similarity=0.128 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHHcC-------CHHHHHHHHHhhCc-CCcC--------------CCCC
Q 019586 4 NNYIEAEDAYRRALSIAPDNN-K-MCNLGICLMKQG-------RIGEAKETLRRVKP-AVAD--------------GPRG 59 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a-~-a~nLG~~y~~~G-------~~dEAi~~~~k~~p-~~~d--------------~lg~ 59 (338)
.++.+|..+|++|....-..+ . .+++|.+|..-. +...|+..|.++.. .+++ ...+
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 478999999999999854432 2 348888876642 23378888888222 2222 1349
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHccC
Q 019586 60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS---------------RLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG---------------r~~eAi~~yekALkl~ 108 (338)
+.+|..+|.+|-+... ..+++++| ++...| +...|..+|..+-..-
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 9999999999999876 89999999 777777 5555666665554443
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.58 E-value=5.3 Score=35.63 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586 62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD 112 (338)
Q Consensus 62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~ 112 (338)
++...+.-.--+.|..++....-|.++...|+|.+|+..++.+..-.|..+
T Consensus 28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 28 DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 333333334445566666666666666666666666666666655555544
No 271
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.40 E-value=1.7 Score=34.54 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..++.++|.++...|++++|+..+++++++......
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 466788999999999999999999999987655443
No 272
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.21 E-value=0.6 Score=49.38 Aligned_cols=103 Identities=13% Similarity=0.023 Sum_probs=81.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHhh----CcCCcC-----------CCCCHHHHHHHHHHHHHhC
Q 019586 11 DAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKETLRRV----KPAVAD-----------GPRGVDSHLKAYERAQQML 74 (338)
Q Consensus 11 ~~y~kALeldPd~a~a~nLG~~y~~-~G~~dEAi~~~~k~----~p~~~d-----------~lg~~deAi~~yekAL~l~ 74 (338)
.....+++..|.++..++++..|.+ +|+..+|..++..+ .+.+.+ ..|...+|--++..|+.-.
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 4456677788888888888888865 88998998888882 222222 2677788888888888888
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
|....-++-+|.++..+|.+.-.+.+|..+.+..|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 888888999999999999999999999999998887554
No 273
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.08 E-value=3 Score=30.27 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=28.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG 86 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~ 86 (338)
.|.+|..+.++|+| ++|..+.+.+++++|++..+..-...
T Consensus 4 lY~lAig~ykl~~Y---------------------~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 4 LYYLAIGHYKLGEY---------------------EKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHTT-H---------------------HHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhH---------------------HHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 45788888999998 55666667799999999887654433
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=86.89 E-value=1.2 Score=42.42 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d 55 (338)
..++.+.|.++|.+|+++-|+...-| .+|....+.|+++.|.+.|++....+|+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 46889999999999999999988855 9999999999997777777774444433
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.43 E-value=2.1 Score=42.84 Aligned_cols=85 Identities=14% Similarity=-0.099 Sum_probs=67.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHC
Q 019586 29 LGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQM-LKDLE---SEMMNKGGDRVEQ 91 (338)
Q Consensus 29 LG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l-~Pd~~---~a~~nLG~~l~~l 91 (338)
-+.++...|++-+|....+++..++|. ..|+.+.-...+++.+-. +|+.| -.+-.++-.+.+.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 344566677888888888887777765 267888888888888877 77774 3445567789999
Q ss_pred CCHHHHHHHHHHHHccCCCCcc
Q 019586 92 SRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 92 Gr~~eAi~~yekALkl~P~~~~ 113 (338)
|-|++|...-+++++++|.+..
T Consensus 189 g~y~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCW 210 (491)
T ss_pred ccchhHHHHHHhhccCCCcchH
Confidence 9999999999999999999876
No 276
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=85.92 E-value=2 Score=48.02 Aligned_cols=95 Identities=16% Similarity=0.086 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC----NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~----nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
+.|++|+..|++.-.-.|...+.| .+|.++..+-.-.. + ...+++|+..|++.- -.|.-|-
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~-~~~~~~~ 553 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG-----------D---PRDFTQALSEFSYLH-GGVGAPL 553 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC-----------C---hHHHHHHHHHHHHhc-CCCCCch
Confidence 346666666666666666655533 55555533211100 0 024566666666642 2355666
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
-|...+.+|..+|+|+|-++||.-|++.-|+++.
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 6778888999999999999999999999999987
No 277
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.25 E-value=13 Score=34.11 Aligned_cols=104 Identities=12% Similarity=-0.036 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-----------------CCCHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC---NLGICLMKQGRIGEAKETLRRVKPAVADG-----------------PRGVDS 62 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-----------------lg~~de 62 (338)
.++.++|...|...-+-+-...... ..|.++...|+..+|+.+|..+..+.+.- .|.|+.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 4566777777776655443322222 78888999999999999999954443321 344544
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 63 HLKAYERA-QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 63 Ai~~yekA-L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
-....+.. -.-+|--..+...||.+-++.|++..|..+|.....
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33333221 112233446677899999999999999999988765
No 278
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.71 E-value=8 Score=40.42 Aligned_cols=111 Identities=12% Similarity=0.090 Sum_probs=77.0
Q ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHH---HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------------CCC
Q 019586 3 QNNYIEAEDAYRRALSIAPD-NNKMC---NLGICLMKQGRIGEAKETLRRVKPAVAD--------------------GPR 58 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd-~a~a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------------~lg 58 (338)
-+.|+.|+..|..|+++-.. +-.++ |++.+|...|+-+.--+..+.+.|.+.. .++
T Consensus 380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn 459 (629)
T KOG2300|consen 380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN 459 (629)
T ss_pred cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999997532 22333 9999999999988888888887776543 156
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 59 GVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++.||...+.+.+++.-. .+-.+.-||.+..-.|+..++....+-++++....++
T Consensus 460 ~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 460 DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 777777777777776511 1122344666777777777777776666666555444
No 279
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.56 E-value=5 Score=38.60 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHh-CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------CCCCHH
Q 019586 6 YIEAEDAYRRALSI-APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------------GPRGVD 61 (338)
Q Consensus 6 ~eeAi~~y~kALel-dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------~lg~~d 61 (338)
..+|.+...+.... .||.-. .| .-+.+|....+|++|..++.++...+.. .+..+.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 45555555555553 344322 44 7888999999999999988884322111 144677
Q ss_pred HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 62 SHLKAYERAQQML-----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 62 eAi~~yekAL~l~-----Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
|+...|++|..+- |+.+..-...+.-..+.-+.++|+..|++++.+--..
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 7777778777662 5544444555555667777888888888877665443
No 280
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=5.1 Score=42.46 Aligned_cols=109 Identities=18% Similarity=0.000 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCCHHHH---HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-----------CCCHHHHHHHHHHHH
Q 019586 9 AEDAYRRALSIAPDNNKMC---NLGICLMKQGRIGEAKETLRR---VKPAVADG-----------PRGVDSHLKAYERAQ 71 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~a~---nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-----------lg~~deAi~~yekAL 71 (338)
|+..+..-+.+++.+...+ .++..+...+....+...++. ++|.++.. ...+.-++.+.+.|.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444455555555555543 244444555555444444444 22222221 223444555556688
Q ss_pred HhCCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586 72 QMLKDLESEMMNK------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT 117 (338)
Q Consensus 72 ~l~Pd~~~a~~nL------G~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~ 117 (338)
...|++......+ |..+..+|+..++....++++.+.|.++++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 8888888776555 888889999999999999999999998775443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.03 E-value=14 Score=38.95 Aligned_cols=104 Identities=12% Similarity=-0.022 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHcC-----CHHHHHHHHHh-hCcCCcCC-----------C-
Q 019586 3 QNNYIEAEDAYRRALS-------IAPDNNKMCNLGICLMKQG-----RIGEAKETLRR-VKPAVADG-----------P- 57 (338)
Q Consensus 3 ~g~~eeAi~~y~kALe-------ldPd~a~a~nLG~~y~~~G-----~~dEAi~~~~k-~~p~~~d~-----------l- 57 (338)
..+.+.|+.+|+.|.+ .. .....+.+|.+|.... +++.|+.+|.+ +.-.++++ .
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~ 340 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTK 340 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCc
Confidence 4578999999999987 22 1222458999998854 67889999999 33344442 2
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586 58 -RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 58 -g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P 109 (338)
.++..|..+|..|.+ -.+..+.+++|.+|.. .-+...|+.+|.++.+..+
T Consensus 341 ~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 341 ERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred cccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 457899999999977 4478889999988764 3578999999999988773
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.83 E-value=20 Score=34.07 Aligned_cols=47 Identities=30% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhC----CCCHH-----HHHHHHHHHHcC-CHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIA----PDNNK-----MCNLGICLMKQG-RIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld----Pd~a~-----a~nLG~~y~~~G-~~dEAi~~~~k 48 (338)
.+|+++.|..+|.|+=.+. |+... .||.|..+...+ ++++|+.++++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~ 61 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR 61 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 5799999999999987654 44444 339999999999 99999999877
No 283
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.68 E-value=6 Score=35.41 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhCCC--CHHH----HHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQMLKD--LESE----MMNKG 85 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~Pd--~~~a----~~nLG 85 (338)
.+|..|.+.|++++|++.|.++...... ..+++.....+..+|-.+... +.+. ...-|
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999999999996554433 277999999888888776433 2222 23357
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q 019586 86 GDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekAL 105 (338)
..++..++|.+|...|-.++
T Consensus 121 L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 121 LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHhchHHHHHHHHHccC
Confidence 78889999999999887664
No 284
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=82.46 E-value=6.2 Score=30.82 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDR 88 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l 88 (338)
..+.-+-+.|++.+|+.+| .+|+..+.+++..-||.+.-......+.
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y--------------~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 11 INAVKAEKEGNAEDAITNY--------------KKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHhcCCHHHHHHHH--------------HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5556667899999999999 5699999999999999887655544443
No 285
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.83 E-value=15 Score=35.75 Aligned_cols=108 Identities=10% Similarity=-0.066 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYE 68 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~ye 68 (338)
.+.-+..|++||+.+|++...+ .+=.+..+...-++....++++...++.. .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4567889999999999888855 33334456667777777777754444431 236777788888
Q ss_pred HHHHhCCCC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKDL------------------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd~------------------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+||+..... ...+.++...+.+.|..+.|+..++..++++-..+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 887654211 133466777888999999999999999998876666
No 286
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=5.1 Score=38.97 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHHHHHHHH----hCC--CCHHHHHHHH
Q 019586 26 MCNLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKAYERAQQ----MLK--DLESEMMNKG 85 (338)
Q Consensus 26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~yekAL~----l~P--d~~~a~~nLG 85 (338)
.|.+..|+...|.|.-+...+.++...+++ +.|+.+.|..+|++.-+ ++. ..-.++.+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 347778888999999999999885555533 36899999999884433 322 2235567788
Q ss_pred HHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI 141 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~ 141 (338)
.+|...++|.+|...|.+++..||.++.. .+.+..-.++..-|...+...+...|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 89999999999999999999999998762 222233344444555666666655554
No 287
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=81.23 E-value=7.3 Score=43.10 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD 55 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d 55 (338)
+.|++++|..+++..-...+++-... -+-.||..+|++++|...|+++...+|.
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 57889999977666555566644444 8999999999999999999997777766
No 288
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=80.78 E-value=18 Score=39.07 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------CCCCHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------GPRGVDSHL 64 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------~lg~~deAi 64 (338)
|-++.-...|.+.|.+.--.+..- |+|..+....-+++|.+.|++-.+.++. .-...+.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 456667788999999876666655 9999999999999999999997776655 123889999
Q ss_pred HHHHHHHHhCCC-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 65 KAYERAQQMLKD-LE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 65 ~~yekAL~l~Pd-~~-~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..|++|++.-|. +. ..|...+..-.+-|--..|+..|++|-.
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999998873 22 2344445555566777788888877644
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.50 E-value=24 Score=35.22 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHH------------hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHH
Q 019586 5 NYIEAEDAYRRALS------------IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ 71 (338)
Q Consensus 5 ~~eeAi~~y~kALe------------ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL 71 (338)
.|.++...|..++. .+|-+.+.+ .++.++..+|+++.|.+..++ |+-+|++++
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleR--------------ALf~~e~~~ 74 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLER--------------ALFAFERAF 74 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHH
Confidence 45666666665555 356666655 999999999999999999876 555555443
Q ss_pred HhC-------------------CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC-Ccc
Q 019586 72 QML-------------------KDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC-KDH 113 (338)
Q Consensus 72 ~l~-------------------Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~-~~~ 113 (338)
.-. +++- .+++.....+.+.|-+.-|.++.+-.+.++|. ++-
T Consensus 75 ~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 75 HPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 311 1111 44566677888999999999999999999998 554
No 290
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.39 E-value=7.2 Score=41.95 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
.+|..++++|...+..-|.+.. .. ++..||.++.++ |.|.+++++|-+.+|.
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL---------------------D~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL---------------------DNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH---------------------HHHHHHHHHHHhhccc
Confidence 3566666666666665543332 22 666666666666 6677777778889999
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+-.....-.+....|.-.+|+.+..+....
T Consensus 427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 8888777777888889999999988776544
No 291
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.38 E-value=6.1 Score=31.33 Aligned_cols=47 Identities=30% Similarity=0.327 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCH---------HH-HHHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNN---------KM-CNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a---------~a-~nLG~~y~~~G~~dEAi~~~~k 48 (338)
+.|+|.+|++.+.+.+....... .+ .++|.++...|++++|+..++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 56899999888888887643211 12 2899999999999777666643
No 292
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=79.88 E-value=6.3 Score=40.50 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHhC--------CC---CHH-----HH---HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALSIA--------PD---NNK-----MC---NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 62 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeld--------Pd---~a~-----a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de 62 (338)
++++|..|+.-|+.||++= |. ..+ .+ .|..||.++++. +.
T Consensus 188 rqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkp---------------------dl 246 (569)
T PF15015_consen 188 RQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKP---------------------DL 246 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCC---------------------ch
Confidence 4567777777777777752 11 111 11 777788888777 55
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
|+..--+.|-++|.+..-|...+.++..+.||.+|-+.+--+
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666699999999999999999999999999998765443
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.77 E-value=8.4 Score=34.35 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
.+..+-...++.+++...+.. +.|..+. ..|+|.+|+..|+...+-.|..+.+--.++.|+..+|+.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 455555677788888888877 6777776 278999999999999999999998888899999998875
Q ss_pred H
Q 019586 95 F 95 (338)
Q Consensus 95 ~ 95 (338)
.
T Consensus 95 ~ 95 (160)
T PF09613_consen 95 S 95 (160)
T ss_pred H
Confidence 3
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.70 E-value=2.5 Score=25.62 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh
Q 019586 27 CNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k 48 (338)
+++|.+|..+|++++|...+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHhC
Confidence 3899999999999999988764
No 295
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.39 E-value=28 Score=35.76 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNK--MC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKA 66 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~--a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~ 66 (338)
|+-..|.+.-.++-++-..+.+ .+ .-+.+-...|+++.|..-|+-.. ++|+ .+|..+.|+.+
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-cChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 6667777777777754434444 22 44566677899999999998733 2222 38899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.++|-+.-|..+.++...=...+..|+++.|++..+..
T Consensus 177 Ae~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 177 AERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999988888899999999999987543
No 296
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.34 E-value=7.5 Score=30.79 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHCCCHHHHHHHHHHH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGG---DRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~---~l~~lGr~~eAi~~yekA 104 (338)
.+.++|+..++++++..++.+.-+..||. +|.+.|+|.+.+++-..=
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999999988876655554 899999999998875443
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.30 E-value=7.2 Score=40.83 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------CCCCHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------GPRGVDSHLKAYE 68 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------~lg~~deAi~~ye 68 (338)
.|+.-.|-.-...++...|..++.. ..+.++..+|.|+.|.+.+.-+.. .... .++++++|....+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 4677777777888888889888855 889999999999999888765221 1111 3778888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
-.+.-.=+.++...--+..-..+|-+++|...|.+.+.++|..
T Consensus 382 ~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 382 MMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 7776666677776666667778899999999999999998853
No 298
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.14 E-value=18 Score=28.08 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=29.3
Q ss_pred HHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 30 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 30 G~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
|.-+-..|+|++|+.+| .+|+..|..+++..||...
T Consensus 13 Ave~D~~g~y~eAl~~Y--------------~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 13 AVELDQEGRFQEALVCY--------------QEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHhccHHHHHHHH--------------HHHHHHHHHHHhhCCCHHH
Confidence 34456889999999999 4599999999999987553
No 299
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.64 E-value=13 Score=37.25 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.|+.|-+++|+..||++.|+.+...++-. .-+.-....++.++++.. +++.+.-|+. |-+..-...|--||..+|--
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~-t~lniheNLiEalLE~QA-YADvqavLak-YDdislPkSA~icYTaALLK 356 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLL-TMLNIHENLLEALLELQA-YADVQAVLAK-YDDISLPKSAAICYTAALLK 356 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHh-hccccCcchHHHHHHHHHHH
Confidence 88999999999999999998876666521 111111222333333321 2222222211 12333334555566544311
Q ss_pred CCCCcc-cccchhhhcCccH---HHHHhhhhcccCCChh
Q 019586 108 QPCKDH-ILPTTNAIKTRDD---FADENIDSNVDVNPIV 142 (338)
Q Consensus 108 ~P~~~~-~l~~l~~~~~~~~---~A~e~~~~al~~~P~~ 142 (338)
.-.-++ ..+....++|... -|.+.+..++++||-.
T Consensus 357 ~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 357 TRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCC
Confidence 110000 1111123333332 3678888899999863
No 300
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.58 E-value=6 Score=31.32 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHcCCHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC----NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~----nLG~~y~~~G~~dEAi~~~~k 48 (338)
+.+.++|+..++++++..++..+.+ .+..+|+..|+|.+++++-.+
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998877755 777788999999888876544
No 301
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=1.2 Score=44.30 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL 115 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l 115 (338)
+.+..|+..-..+++.+++...+|+.+|..+....++++|+.++..+....|++..+.
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~ 346 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIE 346 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHH
Confidence 3445666666667778888999999999999999999999999999999999998744
No 302
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.75 E-value=7.1 Score=37.65 Aligned_cols=56 Identities=14% Similarity=0.004 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++++.|..+.++.+.++|+++.-+--.|.+|.++|-+.-|+..++..++.-|+.+.
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 45588888889999999999999999999999999999999999999999998776
No 303
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.05 E-value=42 Score=32.67 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCCHHHH-HHHHHHHHcCC-----HHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586 10 EDAYRRALSIAPDNNKMC-NLGICLMKQGR-----IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN 83 (338)
Q Consensus 10 i~~y~kALeldPd~a~a~-nLG~~y~~~G~-----~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~n 83 (338)
...|.+.+.-+|.+.+.| .+.......-. -.+..... +.-+.+|++||+.+|+....+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~--------------E~klsilerAL~~np~~~~L~l~ 70 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALA--------------ERKLSILERALKHNPDSERLLLG 70 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHH--------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 356789999999999977 54443333222 11222222 55688899999999988888777
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+=....+....++...-+++++..+|.+..
T Consensus 71 ~l~~~~~~~~~~~l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 71 YLEEGEKVWDSEKLAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCChH
Confidence 766777777778888889999999888776
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.47 E-value=3.1 Score=42.74 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH-H-HHHHHHHHcCCHHHHHHHHHhhCcCC--cCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKM-C-NLGICLMKQGRIGEAKETLRRVKPAV--ADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a-~-nLG~~y~~~G~~dEAi~~~~k~~p~~--~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
++++++....+ +=++-|..+.- . .++..+.++|..+.|+...+--...+ +-.+|+.+.|..+.++ -+.+.
T Consensus 275 ~d~~~v~~~i~-~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~-----~~~~~ 348 (443)
T PF04053_consen 275 GDFEEVLRMIA-ASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE-----LDDPE 348 (443)
T ss_dssp T-HHH-----H-HHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC-----CSTHH
T ss_pred CChhhhhhhhh-hhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh-----cCcHH
Confidence 45555544443 12233444442 2 88888999999999987753311111 1125566655543322 34788
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.|-.||...+.+|+++-|..||+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999999999999999996
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.83 E-value=8.7 Score=39.81 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER 69 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yek 69 (338)
+|+|.++.-+-.=..++.| .+.+| -+|.|++...+|.||-.++..+-|+..-.-.+..+|+....+
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQK 541 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 6899999988888889999 67777 999999999999999999988776443333355555555444
No 306
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.92 E-value=26 Score=35.39 Aligned_cols=54 Identities=9% Similarity=-0.093 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHccCCCC
Q 019586 58 RGVDSHLKAYER-AQQMLKDLESEMMNKGGDRVE---------QSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 58 g~~deAi~~yek-AL~l~Pd~~~a~~nLG~~l~~---------lGr~~eAi~~yekALkl~P~~ 111 (338)
|+.++|+..+.. .....+..++.+--+|.+|.. ...+++|+.+|.++.+++|+.
T Consensus 196 gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 196 GDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 444666666666 444456678888888887653 234799999999999999764
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.28 E-value=5.7 Score=43.97 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=62.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHh-----hCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 019586 11 DAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR-----VKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG 85 (338)
Q Consensus 11 ~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k-----~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG 85 (338)
..+++|++ +|+.-++ ..+..-..+|-+++|...|++ +........|.|++|.+..+.-=++. .-..|++.+
T Consensus 790 RAlR~a~q-~~~e~ea-kvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA 865 (1416)
T KOG3617|consen 790 RALRRAQQ-NGEEDEA-KVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYA 865 (1416)
T ss_pred HHHHHHHh-CCcchhh-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHH
Confidence 45566655 3332222 333444577889999999988 33344456788888877766543332 457889999
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 019586 86 GDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekA 104 (338)
.-+...++.+.|+.+|+++
T Consensus 866 ~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHhhccHHHHHHHHHhc
Confidence 9999999999999999985
No 308
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.14 E-value=6.6 Score=39.99 Aligned_cols=67 Identities=18% Similarity=0.002 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.|..++..+|+|..|++.++-+..... ..|.+ .-+-+...+|..|-+|+.++||.+|+++|..+|-.
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~----------~l~~~---V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKK----------GLYTK---VPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccc----------hhhcc---CcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788999999999888877433211 12222 22335577899999999999999999999987743
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=15 Score=39.11 Aligned_cols=86 Identities=14% Similarity=-0.004 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHccCCCCcccccch---------hhhcCccH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS-IWQPQPCKDHILPTT---------NAIKTRDD 126 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek-ALkl~P~~~~~l~~l---------~~~~~~~~ 126 (338)
.+....+...+..++..+|++..++.+||.++...|....+...+.. +..+.|.+.+.++.+ ....++..
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence 56677889999999999999999999999999999998888876655 999999988744332 22344444
Q ss_pred HHHHhhhhcccCCChh
Q 019586 127 FADENIDSNVDVNPIV 142 (338)
Q Consensus 127 ~A~e~~~~al~~~P~~ 142 (338)
.+..++...+.+.|..
T Consensus 160 ~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 160 EAELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4555555566555553
No 310
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.95 E-value=15 Score=38.66 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHH-----h----CC----------CCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586 2 QQNNYIEAEDAYRRALS-----I----AP----------DNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS 62 (338)
Q Consensus 2 q~g~~eeAi~~y~kALe-----l----dP----------d~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de 62 (338)
+.|.|.-++.+|.+|+. + .| .....||.|..|...|+.-+
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~--------------------- 353 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL--------------------- 353 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH---------------------
Confidence 56789999999999995 1 11 11225699999999999854
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 019586 63 HLKAYERAQQMLKDLESEMMNKGGDRV 89 (338)
Q Consensus 63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~ 89 (338)
|.+||.++++.-..+|..|.+|+.+..
T Consensus 354 AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 354 AFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 555555577777778888888888665
No 311
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.08 E-value=17 Score=32.39 Aligned_cols=51 Identities=8% Similarity=-0.169 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
..+..+.+.++.++..| ++..+.+++.++..+|+.++|....+++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45667788888998889 6899999999999999999999999999999993
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=70.07 E-value=12 Score=34.59 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhCCC--C-----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 019586 6 YIEAEDAYRRALSIAPD--N-----NKMCNLGICLMKQGRIGEAKETLRRV 49 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd--~-----a~a~nLG~~y~~~G~~dEAi~~~~k~ 49 (338)
+..|...|.+|++.... . ...|-+|.+.++.|++++|+.+|.++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46788899999886532 2 11559999999999998888888884
No 313
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.00 E-value=15 Score=35.52 Aligned_cols=56 Identities=16% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMN 83 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~n 83 (338)
|+=..|...++|+.|..+.++ ++|.++. .+|.+.-|+..++..++.-|+.+.+-.-
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 666666666667766666666 3454442 2566688888888888888988876543
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.87 E-value=32 Score=30.49 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=18.8
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
+.|+.++....-|.++...|+|.+|+..++....-.+.
T Consensus 39 LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 39 LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 44555555555555555555555555555544444433
No 315
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.53 E-value=58 Score=34.03 Aligned_cols=96 Identities=13% Similarity=0.010 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHH--Hh------------hCcCCcC---------------C
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETL--RR------------VKPAVAD---------------G 56 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~--~k------------~~p~~~d---------------~ 56 (338)
-+.|+.+++.+++..+.+.+--|.-..+.++ .|.+|+..- -+ +.|.... .
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~~fvKq-~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVFLFVKQ-AYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6788888888888877666433444333333 455554321 11 1111110 3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
+|+|.++.-+-.=..++.| .+.+|--+|.+++...+|.+|..++.+
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8999999888888889999 899999999999999999999999876
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=69.46 E-value=13 Score=36.10 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.++++.++..+++.+.++|-+...|..+=.+|+..|+...|+..|++..+.
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999887765
No 317
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.04 E-value=19 Score=34.11 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCCHHHHHHH----HHHHHcCCH--HHHHHHHHh----hCcCCcCCCCCHHHHHHHH
Q 019586 1 MQQNNYIEAEDAYRRALSIA---PDNNKMCNLG----ICLMKQGRI--GEAKETLRR----VKPAVADGPRGVDSHLKAY 67 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeld---Pd~a~a~nLG----~~y~~~G~~--dEAi~~~~k----~~p~~~d~lg~~deAi~~y 67 (338)
|++++|++|++++.....+- .....+..|+ .+|...+.- ++.+..+-+ +.+..++...=...|++|-
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS 80 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 46789999998877665532 2222233333 334433321 112222222 2233333222234445444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
+.-...-.++..|..+|..|.+.|++.+|..||-.
T Consensus 81 -~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 81 -KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred -ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 22222234678899999999999999999998843
No 318
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=68.24 E-value=20 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 31 ICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 31 ~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
.-.-..|+|++|+.+|. +|+..|.++++..|+..
T Consensus 14 v~~D~~g~y~eA~~~Y~--------------~aie~l~~~~k~e~~~~ 47 (75)
T cd02678 14 IEEDNAGNYEEALRLYQ--------------HALEYFMHALKYEKNPK 47 (75)
T ss_pred HHHHHcCCHHHHHHHHH--------------HHHHHHHHHHhhCCCHH
Confidence 34467899999999994 58999999998888643
No 319
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.01 E-value=17 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGD 87 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~ 87 (338)
|+.+.|...|++++...|..+..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 356788889999999999888888776543
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=64 Score=33.03 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH--HHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586 7 IEAEDAYRRALSIAPDNNKMCN--LGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK 84 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~a~n--LG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL 84 (338)
++++..=.+.++.+|++...|| .+.+...+-.. ...-.+ .+.-+++-+.....|++++|+.-.+|+.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~--~~~~~e--------k~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA--QLEPLE--------KQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh--cCCHHH--------HHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 5667777777778888777663 33333222210 000011 11245778899999999999999999999
Q ss_pred HHHHHHCCCH--HHHHHHHHHHHccCCCCcc
Q 019586 85 GGDRVEQSRL--FDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 85 G~~l~~lGr~--~eAi~~yekALkl~P~~~~ 113 (338)
-.++.+.+.. ..=++..+++++.+|.+.+
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh 146 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFH 146 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCccccc
Confidence 9999988775 6677889999999999877
No 321
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=66.99 E-value=21 Score=34.62 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV 49 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~ 49 (338)
.|+++.++..+++.+.++|.+-..| .+=..|...|+...|+..|+++
T Consensus 166 ~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 166 CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 4678888889999999999888877 7777888899998888888773
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.77 E-value=62 Score=34.10 Aligned_cols=99 Identities=16% Similarity=0.052 Sum_probs=71.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcC---CHHHHHHHHHhh-CcCCcC--------------CCCCHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQG---RIGEAKETLRRV-KPAVAD--------------GPRGVDSHLKA 66 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G---~~dEAi~~~~k~-~p~~~d--------------~lg~~deAi~~ 66 (338)
+++.|..+|.+|-.....++ .+.+|.+|.... ++..|..+|..+ ...+.. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~~~a-~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDA-QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCchH-HHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 67889999999988753322 448999988766 578999999993 333333 24599999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHc
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQ-SRLFDAFLGSSSIWQ 106 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~l-Gr~~eAi~~yekALk 106 (338)
|.+|-+.. .+.+...++..+..- +++..+...|....+
T Consensus 387 ~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 387 YKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 99999987 566666666654433 888777776554433
No 323
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=65.41 E-value=46 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=26.5
Q ss_pred HHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 30 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 30 G~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
|..+-..|++++|+.+|. +|+..|.+++...|+
T Consensus 15 Av~~d~~g~~~eAl~~Y~--------------~a~e~l~~~~~~~~~ 47 (77)
T smart00745 15 ALKADEAGDYEEALELYK--------------KAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHcCCHHHHHHHHH--------------HHHHHHHHHhccCCC
Confidence 344456899999999994 589999999988876
No 324
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=65.19 E-value=16 Score=34.73 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHhC----CC----CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcc
Q 019586 58 RGVDSHLKAYERAQQML----KD----LESEMMNKGGDRVEQS-RLFDAFLGSSSIWQP 107 (338)
Q Consensus 58 g~~deAi~~yekAL~l~----Pd----~~~a~~nLG~~l~~lG-r~~eAi~~yekALkl 107 (338)
|+++.|..+|.|+-.+. |+ ....+|+.|..+...+ ++++|..+++++..+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34444444444444333 33 2366799999999999 999999999999988
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.06 E-value=20 Score=31.77 Aligned_cols=61 Identities=7% Similarity=-0.012 Sum_probs=50.8
Q ss_pred HHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 34 MKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 34 ~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
...++.+++...+.. +.|..++ ..|+|++|+..|+...+-.+..+-+--.++.|+.-+|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 347888888888777 6777776 378999999999999998888888888889999998874
No 326
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.97 E-value=16 Score=21.83 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC 27 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~ 27 (338)
|+++.|...|++++...|.....|
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELW 24 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHH
Confidence 578999999999999999888877
No 327
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.85 E-value=80 Score=29.88 Aligned_cols=91 Identities=9% Similarity=-0.029 Sum_probs=68.2
Q ss_pred CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC-------cC----------CCCCHHHHHHHHHHHHHh--CCC------
Q 019586 23 NNKMC-NLGICLMKQGRIGEAKETLRRVKPAV-------AD----------GPRGVDSHLKAYERAQQM--LKD------ 76 (338)
Q Consensus 23 ~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~-------~d----------~lg~~deAi~~yekAL~l--~Pd------ 76 (338)
....+ .++.+.++.|+++-|...+.++.... +. ..|+..+|+..++..+.. ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 33344 88999999999999999999955422 22 378899999999888871 111
Q ss_pred --------------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHccCCCCcc
Q 019586 77 --------------------------LESEMMNKGGDRVEQ------SRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 77 --------------------------~~~a~~nLG~~l~~l------Gr~~eAi~~yekALkl~P~~~~ 113 (338)
.+.++..+|...... +.++++...|..+++++|....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 124566677777777 8889999999999999998765
No 328
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.32 E-value=47 Score=25.85 Aligned_cols=32 Identities=19% Similarity=0.056 Sum_probs=23.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC
Q 019586 29 LGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML 74 (338)
Q Consensus 29 LG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~ 74 (338)
.|.-+-..|+|++|+.+| .+|+..|..++...
T Consensus 12 ~Ave~D~~g~y~eA~~~Y--------------~~aie~l~~~~~~~ 43 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYY--------------KEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHccCHHHHHHHH--------------HHHHHHHHHHHHhc
Confidence 334445789999999998 45888888876554
No 329
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=62.33 E-value=31 Score=32.53 Aligned_cols=106 Identities=10% Similarity=-0.065 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES 79 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~ 79 (338)
..|+|+.|+++.+.||+.+-..++-| +.+.++... =.+-|...+..-.+..+. +......+..-..+ |+-..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaee-v~~~A~~~~~ag~~~e~~----~~~~~~~l~~~~dm-pd~vr 168 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEE-VANAALKAASAGESVEPY----FLRVFLDLTTEWDM-PDEVR 168 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHH-HHHHHHHHHHcCCCCChH----HHHHHHHHHhcCCC-ChHHH
Confidence 46999999999999999875444433 333222211 112222222221111111 01111111111111 44443
Q ss_pred H--HHHHHHHHH---------HCCCHHHHHHHHHHHHccCCCCcc
Q 019586 80 E--MMNKGGDRV---------EQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 80 a--~~nLG~~l~---------~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+ |-..|..++ ..+++..|+.++++|++++|....
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 3 444666663 556889999999999999998654
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=61.85 E-value=14 Score=30.94 Aligned_cols=56 Identities=16% Similarity=-0.007 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCC-----------HHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLES---EMMNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~---a~~nLG~~l~~lGr-----------~~eAi~~yekALkl~P~~~~ 113 (338)
|++-+|++..+..+...++... .|..-|.++..+.. +..|+.||.++..+.|..+.
T Consensus 10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 6667777788888887776663 34445766655443 35678899999999888755
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.20 E-value=2.1e+02 Score=30.65 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh----CcCCcC----------CCCCHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV----KPAVAD----------GPRGVDSHLKA 66 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~----~p~~~d----------~lg~~deAi~~ 66 (338)
..|+++...-.|++++--=..+.+.| +++......|+.+-|-..+.+. .+..+. ..|+++.|..+
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 35788888888988887666666766 8888888889998888777772 222222 47899999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586 67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL 99 (338)
Q Consensus 67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~ 99 (338)
|++...--|....+-.....+...+|+.+.+..
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999998889999988888899999999999984
No 332
>PF12854 PPR_1: PPR repeat
Probab=61.08 E-value=19 Score=23.14 Aligned_cols=27 Identities=11% Similarity=-0.132 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
+...|..|-..|.+.|++++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 467788899999999999999999875
No 333
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.73 E-value=20 Score=39.55 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC-cC------------------CcC------C
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK-PA------------------VAD------G 56 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~-p~------------------~~d------~ 56 (338)
..|+|+-|+++|.++=..+ .--.+|-+.|+|+.|...-++.. |. +.+ .
T Consensus 777 n~~dfe~ae~lf~e~~~~~-------dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEADLFK-------DAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred cchhHHHHHHHHHhcchhH-------HHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 3577888888887652111 22234555666666665555411 10 000 1
Q ss_pred CCCHHHHHHHHHHH------HH----hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 57 PRGVDSHLKAYERA------QQ----MLKDL-ESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 57 lg~~deAi~~yekA------L~----l~Pd~-~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.|..+.|++.|.+. |+ ..|+. .+.+..+|.-|...|++.+|..+|-++-
T Consensus 850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 45667777777653 22 22443 3677889999999999999998887653
No 334
>PF12854 PPR_1: PPR repeat
Probab=60.66 E-value=18 Score=23.30 Aligned_cols=29 Identities=31% Similarity=0.276 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHh
Q 019586 20 APDNNKMCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 20 dPd~a~a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
.|+...+..+-..|.+.|++++|+..|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35444444888899999999999998875
No 335
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=60.57 E-value=36 Score=29.45 Aligned_cols=50 Identities=6% Similarity=-0.001 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 58 RGVDSHLKAYERAQQMLKD------------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd------------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
|-|++|...+++|.++... ++-.|-.|+.++..+|+|++++..-.++|..
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4557777777778776532 2355778999999999999999988888754
No 336
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.80 E-value=15 Score=25.64 Aligned_cols=26 Identities=12% Similarity=-0.020 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.+.|+.+|.++|+++.|...++..+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36799999999999999999999984
No 337
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.74 E-value=24 Score=34.56 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
.+++.+|...|..+++..|++.++...|+.+|...|+.++|...+..
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 57889999999999999999999999999999999999998876644
No 338
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=57.63 E-value=37 Score=26.16 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL 77 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~ 77 (338)
.++|+.+..+|++ ....|+|++|+.+|. .|+..|..+++..++.
T Consensus 3 l~~Ai~lv~~Av~--------------~D~~g~y~eA~~lY~--------------~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVK--------------KDQRGDAAAALSLYC--------------SALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHH--------------HHHhccHHHHHHHHH--------------HHHHHHHHHHhhCCCH
Confidence 3456666666544 457889999999984 4888888888877653
No 339
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=56.35 E-value=34 Score=25.81 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 30 GICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 30 G~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
|.-.-..|++++|+.+| .+|+..|.+++...|+
T Consensus 13 Av~~D~~g~~~~Al~~Y--------------~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 13 AVKEDEDGNYEEALELY--------------KEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHcCCHHHHHHHH--------------HHHHHHHHHHhccCCC
Confidence 34445669999999998 4588999999888776
No 340
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.08 E-value=21 Score=39.05 Aligned_cols=78 Identities=9% Similarity=-0.093 Sum_probs=55.2
Q ss_pred HH-HHHHHHHHcCCHHHHHHHHHhhC--cCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 26 MC-NLGICLMKQGRIGEAKETLRRVK--PAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 26 a~-nLG~~y~~~G~~dEAi~~~~k~~--p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
++ ++|..+..+..|++|.++|.+.. ....+.+-+. +-..-++.+.+-.|++...+-.+|.++...|.-++|..+|-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l-e~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL-ELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH-HhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 44 99999999999999999998821 1222211100 01123445556669999999999999999999999999886
Q ss_pred HH
Q 019586 103 SI 104 (338)
Q Consensus 103 kA 104 (338)
+.
T Consensus 877 r~ 878 (1189)
T KOG2041|consen 877 RR 878 (1189)
T ss_pred hc
Confidence 63
No 341
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.70 E-value=63 Score=32.41 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH--HH---HHHHHHHHcCCHHHHHHHHHhhCc
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK--MC---NLGICLMKQGRIGEAKETLRRVKP 51 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~--a~---nLG~~y~~~G~~dEAi~~~~k~~p 51 (338)
..++|..|...|+..+..-|.... .+ ..|..++..-++.+|...++++..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 468899999999999885333333 22 445556678889999999998443
No 342
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.99 E-value=44 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~ 78 (338)
+.|.-+-..|++++|+.+| .+|+..|.++++..++..
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y--------------~~ai~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELY--------------KEAIEYLMQALKSESNPE 46 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHH--------------HHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHCCCHHHHHHHH--------------HHHHHHHHHHhccCCCHH
Confidence 4455566799999999999 459999999999886533
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=53.45 E-value=26 Score=40.15 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH----------hCCCCHHHH---HHHHHHHHHCCCH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ----------MLKDLESEM---MNKGGDRVEQSRL 94 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~----------l~Pd~~~a~---~nLG~~l~~lGr~ 94 (338)
-+|.-++..+.|++|.-+|++ .|+.++|+.+|+.+.. +.+.-.... ..|...+.+++++
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~--------~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYER--------CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHH--------hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccc
Confidence 456666667777777777766 3555666665554422 233333333 5577778888888
Q ss_pred HHHHHHHHHHH
Q 019586 95 FDAFLGSSSIW 105 (338)
Q Consensus 95 ~eAi~~yekAL 105 (338)
-+|-......+
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 88877766654
No 344
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.30 E-value=57 Score=28.70 Aligned_cols=57 Identities=7% Similarity=0.070 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHH-hCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 5 NYIEAEDAYRRALS-IAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 5 ~~eeAi~~y~kALe-ldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
+..+.|.+++..++ -.|..-. .|-|+..+.+.++|+.|+.+ ....++..|++..+.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~y---------------------vd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRY---------------------VDALLETEPNNRQAL 108 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHH---------------------HHHHHhhCCCcHHHH
Confidence 45678888888886 4444333 44888888899999555555 455777777776654
Q ss_pred H
Q 019586 82 M 82 (338)
Q Consensus 82 ~ 82 (338)
.
T Consensus 109 ~ 109 (149)
T KOG3364|consen 109 E 109 (149)
T ss_pred H
Confidence 3
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.90 E-value=89 Score=29.00 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHH
Q 019586 57 PRGVDSHLKAYERAQQMLKD----LESEMMNKGGDRVEQSRLFDAF 98 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd----~~~a~~nLG~~l~~lGr~~eAi 98 (338)
..+.++|+..|-+++++.+. +++.+..|+.+++.+|+++.|-
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34566666666666666433 3566666666666666666653
No 346
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.65 E-value=18 Score=44.01 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=76.5
Q ss_pred CCCCHHHHHHHHHHH-HHhCCCCHH--HH-HHHHHHHHcCCHHHHHHHHHh--hCcCCcC------CCCCHHHHHHHHHH
Q 019586 2 QQNNYIEAEDAYRRA-LSIAPDNNK--MC-NLGICLMKQGRIGEAKETLRR--VKPAVAD------GPRGVDSHLKAYER 69 (338)
Q Consensus 2 q~g~~eeAi~~y~kA-LeldPd~a~--a~-nLG~~y~~~G~~dEAi~~~~k--~~p~~~d------~lg~~deAi~~yek 69 (338)
+.+.|.+|+-++++- ..-.+.... .+ .+=.+|...+++|+-.-.+.. +.|...+ ..|++..|..+|++
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~ 1474 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYER 1474 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHH
Confidence 356788888888884 111122222 22 777799999999887777763 3443332 48999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
+++.+|+....+...-...+..|.+...+.+.+-...-.+
T Consensus 1475 ~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s 1514 (2382)
T KOG0890|consen 1475 LIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS 1514 (2382)
T ss_pred hhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccC
Confidence 9999999888887777777888888888776665544444
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.69 E-value=67 Score=35.90 Aligned_cols=84 Identities=15% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh---CcC--Cc-C----------------CCCCHHHHHHHHHHHHHhCCCCH-----HH
Q 019586 28 NLGICLMKQGRIGEAKETLRRV---KPA--VA-D----------------GPRGVDSHLKAYERAQQMLKDLE-----SE 80 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~---~p~--~~-d----------------~lg~~deAi~~yekAL~l~Pd~~-----~a 80 (338)
-.++.+..+.+++||.....++ .+. .. . ..|+.++|++..+.++..-|... .+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 7788889999999999998882 222 11 1 26899999999999999988754 55
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586 81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK 111 (338)
Q Consensus 81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~ 111 (338)
+..+|.+.+-.|++++|....+.+.++.-..
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 7889999999999999999998888875443
No 348
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.66 E-value=44 Score=38.64 Aligned_cols=109 Identities=14% Similarity=0.064 Sum_probs=77.3
Q ss_pred CCCCHHHHHH------HHHHH-HHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC-------c-CCcC----------
Q 019586 2 QQNNYIEAED------AYRRA-LSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK-------P-AVAD---------- 55 (338)
Q Consensus 2 q~g~~eeAi~------~y~kA-LeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~-------p-~~~d---------- 55 (338)
.+|.+.+|.+ ++.+. -.+.|+.+..| .|+.++...|++++|+..-+++. - +.++
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3456666666 44422 22346666655 99999999999999999888721 1 1111
Q ss_pred ---CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 56 ---GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 56 ---~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
...+...|+..+.++..+. |.-.....+++.++...++++-|+.+.+.|++++-.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~ 1089 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK 1089 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 2447777888888887763 555566788999999999999999999999985543
No 349
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.57 E-value=2.1e+02 Score=27.12 Aligned_cols=76 Identities=14% Similarity=-0.007 Sum_probs=50.9
Q ss_pred CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHH----HHHHHHhCCCCHHHHHHHHH-HHHHCCCHHH
Q 019586 23 NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA----YERAQQMLKDLESEMMNKGG-DRVEQSRLFD 96 (338)
Q Consensus 23 ~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~----yekAL~l~Pd~~~a~~nLG~-~l~~lGr~~e 96 (338)
++..| -+|..|.+.|++.+|..+|-. +...++... +.-..+-.|...+.+...+. -|...|+...
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~---------~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~ 159 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL---------GTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRD 159 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT---------S-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh---------cCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHH
Confidence 44566 999999999999999999866 333334333 22333455666666666665 5888999999
Q ss_pred HHHHHHHHHcc
Q 019586 97 AFLGSSSIWQP 107 (338)
Q Consensus 97 Ai~~yekALkl 107 (338)
|...+...++.
T Consensus 160 A~~~~~~f~~~ 170 (260)
T PF04190_consen 160 ANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988777655
No 350
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.31 E-value=21 Score=35.63 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-----------CCCHHHHHHHHHHHHHhCCCCH
Q 019586 14 RRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG-----------PRGVDSHLKAYERAQQMLKDLE 78 (338)
Q Consensus 14 ~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-----------lg~~deAi~~yekAL~l~Pd~~ 78 (338)
.++....|.+...| .++.--.+.|-|.+--..|.+ ..|.+.+. .++++.+...|.++++++|+.+
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 34444456666666 333333344445444444444 23333331 3455555555555555555555
Q ss_pred HHH
Q 019586 79 SEM 81 (338)
Q Consensus 79 ~a~ 81 (338)
..|
T Consensus 177 ~iw 179 (435)
T COG5191 177 RIW 179 (435)
T ss_pred hHH
Confidence 554
No 351
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.35 E-value=21 Score=27.79 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=5.0
Q ss_pred cCCHHHHHHHH
Q 019586 36 QGRIGEAKETL 46 (338)
Q Consensus 36 ~G~~dEAi~~~ 46 (338)
.|+|++|+.+|
T Consensus 19 ~gny~eA~~lY 29 (75)
T cd02680 19 KGNAEEAIELY 29 (75)
T ss_pred hhhHHHHHHHH
Confidence 34444444444
No 352
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=47.75 E-value=29 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=9.2
Q ss_pred HHHHcCCHHHHHHHHHh
Q 019586 32 CLMKQGRIGEAKETLRR 48 (338)
Q Consensus 32 ~y~~~G~~dEAi~~~~k 48 (338)
.+-..|+.++|+.+|++
T Consensus 17 ~~dE~g~~e~Al~~Y~~ 33 (79)
T cd02679 17 RADEWGDKEQALAHYRK 33 (79)
T ss_pred hhhhcCCHHHHHHHHHH
Confidence 33344666666666644
No 353
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=47.58 E-value=28 Score=20.62 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|..+-..|.+.|++++|...|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467778899999999999999988654
No 354
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.33 E-value=43 Score=25.89 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd 76 (338)
+.+|+..+.+|++.+ ..|+|++|..+|. +|+..|..+++..++
T Consensus 3 l~~A~~l~~~Ave~d--------------~~~~y~eA~~~Y~--------------~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKE--------------EEGDYEAAFEFYR--------------AGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHH--------------HHhhHHHHHHHHH--------------HHHHHHHHHhccCCC
Confidence 356777777776654 4488999998884 478888888877765
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=47.32 E-value=21 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCCCHHHHHHH--HHHHHHhCCCC
Q 019586 2 QQNNYIEAEDA--YRRALSIAPDN 23 (338)
Q Consensus 2 q~g~~eeAi~~--y~kALeldPd~ 23 (338)
++|++++|+.. |+-+..+++.+
T Consensus 13 ~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 13 QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHhhHHHHHHHHHHHHHHHhcccC
Confidence 46899999999 55888887753
No 356
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=47.01 E-value=22 Score=27.56 Aligned_cols=32 Identities=9% Similarity=-0.128 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.+|+..+.+|++.+- .|+|++|+.+|..++..
T Consensus 4 ~~A~~l~~~Ave~d~---------------~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEE---------------EGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHH
Confidence 456666666666542 37888888888777653
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.16 E-value=1.9e+02 Score=29.39 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh---------
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM--------- 73 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l--------- 73 (338)
.+..+-|..-..|++++|..+.+| .|+.- ..--..+|...|+++.. .+...|++..++
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALk----------a~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALK----------AGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHH----------HHHHHHhhHHHHhhhccchhh
Confidence 345667788889999999988887 44432 22235667777766211 111222221111
Q ss_pred ---CCCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586 74 ---LKDLESEM--MNKGGDRVEQSRLFDAFLGSSSIWQPQP 109 (338)
Q Consensus 74 ---~Pd~~~a~--~nLG~~l~~lGr~~eAi~~yekALkl~P 109 (338)
...+...| -.|+.+-.++|+..||++.++...+-.|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 11222333 4588999999999999999998877766
No 358
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=45.04 E-value=1.3e+02 Score=27.98 Aligned_cols=53 Identities=6% Similarity=0.014 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhh-CcCCcC-----------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 019586 37 GRIGEAKETLRRV-KPAVAD-----------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ 91 (338)
Q Consensus 37 G~~dEAi~~~~k~-~p~~~d-----------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~l 91 (338)
+.+..|+..|..+ ..+.++ ..++..+|..++++|-.+. +.++-++|...|+.-
T Consensus 87 ~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG 157 (248)
T ss_pred cCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc
Confidence 4577888888772 222222 2457889999999987654 677777777777643
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.73 E-value=51 Score=31.38 Aligned_cols=56 Identities=4% Similarity=-0.218 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
++..+|+...+.-++-+|.+......|=..|.-.|+|++|...++-+-++.|+...
T Consensus 15 ~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 15 NSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred ccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 35578888888899999999988888888999999999999999999999998765
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.42 E-value=40 Score=33.34 Aligned_cols=46 Identities=24% Similarity=0.163 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
.|.+.+|+.+.++++.++|-+...+ .|-.+|+..|+--.|+..|++
T Consensus 292 ~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 292 AGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred cCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 5778888888888888888777766 777788888887777777766
No 361
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.16 E-value=2.1e+02 Score=29.52 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCHHHH-HHHHHHHHcCCHHHHHHHHHhh
Q 019586 22 DNNKMC-NLGICLMKQGRIGEAKETLRRV 49 (338)
Q Consensus 22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~ 49 (338)
++...| .||.....+|+++-|..+|+++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 345555 8899989999998888888883
No 362
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=52 Score=37.63 Aligned_cols=72 Identities=11% Similarity=0.079 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCC------cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAV------ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 101 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~------~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~y 101 (338)
.+|.+-...+-|+||.+.|++..-+. .+..+..+.|....+++ +.+..|..+|.+-++.|...+|+..|
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHH
Confidence 45556666666788888887722111 11123334333333332 34566666666666666666666666
Q ss_pred HHH
Q 019586 102 SSI 104 (338)
Q Consensus 102 ekA 104 (338)
-+|
T Consensus 1128 ika 1130 (1666)
T KOG0985|consen 1128 IKA 1130 (1666)
T ss_pred Hhc
Confidence 543
No 363
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=44.02 E-value=44 Score=19.98 Aligned_cols=27 Identities=7% Similarity=-0.067 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|+.+-..|.+.|++++|...|.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677889999999999999988654
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=44.01 E-value=69 Score=35.80 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~------a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
..|++++|+++.+.++..=|.... ...+|.+.+-.|++++|..+.++
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~ 522 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQ 522 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence 367888888888888887765544 11888888888888888888766
No 365
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=43.99 E-value=38 Score=26.39 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 83 NKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 83 nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..+.-+-..|++.+|+.||+.+++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334444567888888888877654
No 366
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.96 E-value=75 Score=31.33 Aligned_cols=101 Identities=12% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHcCCHHHHHHHHHhhC--------cCCcCC-----------C
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-----NLGICLMKQGRIGEAKETLRRVK--------PAVADG-----------P 57 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-----nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d~-----------l 57 (338)
+..+.++|+..|++.+++.+.-+++- ..--++.++|+|++-...|.++. .++.+. -
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578999999999999998877732 66677899999999999998822 233321 2
Q ss_pred CCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 58 RGVDSHLKAYERAQQMLK--D----LESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 58 g~~deAi~~yekAL~l~P--d----~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.+.+--...|+..+.-.. . |-..-..||.+|+..|.|..-...+.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlk 169 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILK 169 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHH
Confidence 233333334443333211 1 22334568999999888876655543
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.57 E-value=1.9e+02 Score=28.76 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHcCCHHHHHHHHHh---h----------------CcCCc
Q 019586 3 QNNYIEAEDAYRRALSIAPDN---------NKMCNLGICLMKQGRIGEAKETLRR---V----------------KPAVA 54 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~---------a~a~nLG~~y~~~G~~dEAi~~~~k---~----------------~p~~~ 54 (338)
.+++++|+..|.+.+.-.-.- ....+++.+|...|++..--+.... + ...++
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 468999999999988763211 1133999999999997643333322 2 22333
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHH
Q 019586 55 DGPRGVDSHLKAYERAQQMLKDLESEM------MNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 55 d~lg~~deAi~~yekAL~l~Pd~~~a~------~nLG~~l~~lGr~~eAi~~yekA 104 (338)
.....++.-+..++.+++-...--... ..+..++++.|+|.+|+....-.
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345567777777777776432222222 44677999999999999876443
No 368
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.50 E-value=27 Score=37.10 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 61 DSHLKAYERAQQML-----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 61 deAi~~yekAL~l~-----Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
..++..|.+||... -.+.--|..+|..|++.++|.+|+.+|..+-
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 56788888888753 3344667889999999999999999998763
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.00 E-value=1.7e+02 Score=31.04 Aligned_cols=27 Identities=11% Similarity=-0.170 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 77 LESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 77 ~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
.+..++-.|..+...|+++.|...|.+
T Consensus 403 ~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 403 YPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 467788899999999999999999983
No 370
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=41.71 E-value=49 Score=36.63 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCc--CCc---CCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKP--AVA---DGPRGVDSHLKAYERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGS 101 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p--~~~---d~lg~~deAi~~yekAL~l~Pd~~-~a~~nLG~~l~~lGr~~eAi~~y 101 (338)
.++.-|...|+|+-|...|.+..- +-. ...|+|..|.+.-+++.. |... ..|...+.-+-+.|+|.+|.+.|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 788889999999999999988321 111 136788888777777643 5444 44666777888899998887766
No 371
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.33 E-value=3.5e+02 Score=29.33 Aligned_cols=102 Identities=14% Similarity=-0.049 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLKAY 67 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~~y 67 (338)
+.+.|...+.+......-..+ .. .+|.-.+..+...+|...+..+.+...+ ..++++....++
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i 335 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWL 335 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHH
Confidence 345566666654343332222 11 4554444443356777777764433211 256777766666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
...-.-....+..+|-+|.++..+|+.++|..+|+++..
T Consensus 336 ~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 336 ARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 664333345667889999999999999999999999854
No 372
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.06 E-value=64 Score=35.11 Aligned_cols=57 Identities=5% Similarity=-0.140 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+|..++++|+..++.-|. ++...-+|..+|+.+.+++.|.++++.|-+.+|.++-
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l 429 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPL 429 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHH
Confidence 34778888888888876554 4455677899999999999999999999999998765
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.78 E-value=69 Score=28.40 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCC
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV 53 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~ 53 (338)
.+..++..++.+...|+-..+.+++.++..+|+.++|....+++.-.+
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677788888888866556699999999999988877776643333
No 374
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=40.60 E-value=56 Score=20.59 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=20.8
Q ss_pred HHHHHHHH--HHHHHCC-----CHHHHHHHHHHHHcc
Q 019586 78 ESEMMNKG--GDRVEQS-----RLFDAFLGSSSIWQP 107 (338)
Q Consensus 78 ~~a~~nLG--~~l~~lG-----r~~eAi~~yekALkl 107 (338)
+.+.++|| .+|..-. ++.+|+.+|+++.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 46778888 5444433 378999999988653
No 375
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=40.38 E-value=83 Score=33.21 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.+.+--..|.+++...|++++.| .-+.-....+. ..+.|...|.++|+++|+.+..|
T Consensus 120 ~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~--------------------ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 120 TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL--------------------NIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--------------------chHHHHHHHHHHhhcCCCChHHH
Confidence 36677788999999999999988 33333333333 12566677777888888888665
No 376
>PF13041 PPR_2: PPR repeat family
Probab=40.34 E-value=58 Score=22.13 Aligned_cols=30 Identities=3% Similarity=-0.140 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
...|+.+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 456788888999999999999999987653
No 377
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.15 E-value=1.1e+02 Score=30.79 Aligned_cols=108 Identities=9% Similarity=-0.060 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-HH-HHHHHH-----HHcCCHHHHHHHHHh---hCcCCcCC---------CCCHHHHHH
Q 019586 5 NYIEAEDAYRRALSIAPDNNK-MC-NLGICL-----MKQGRIGEAKETLRR---VKPAVADG---------PRGVDSHLK 65 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~-a~-nLG~~y-----~~~G~~dEAi~~~~k---~~p~~~d~---------lg~~deAi~ 65 (338)
-.+++.....+|+...---+. .. -++.++ ...-+|..=..+|+- +.|.-... ......++.
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa 350 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLA 350 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHH
Confidence 356777888888876532222 22 333333 334457666666655 22222111 123344444
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 66 AYERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 66 ~yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+-... +|. +--.|...|..+.++|+..+|...|++++.+.++..+
T Consensus 351 ~ve~L~~-~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 351 MVEALLA-RPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHhhc-ccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 4443333 333 3455666899999999999999999999999887665
No 378
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.99 E-value=65 Score=28.50 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=10.9
Q ss_pred HHcCCHHHHHHHHHhhC
Q 019586 34 MKQGRIGEAKETLRRVK 50 (338)
Q Consensus 34 ~~~G~~dEAi~~~~k~~ 50 (338)
...|+|+.++..|.++.
T Consensus 97 i~~~dy~~~i~dY~kak 113 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAK 113 (182)
T ss_pred HHcCcHHHHHHHHHHHH
Confidence 35677777777776643
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.50 E-value=43 Score=23.29 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhC
Q 019586 27 CNLGICLMKQGRIGEAKETLRRVK 50 (338)
Q Consensus 27 ~nLG~~y~~~G~~dEAi~~~~k~~ 50 (338)
++|+.+|..+|+.+.|...++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 378999999999988888888744
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.88 E-value=58 Score=32.24 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=17.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.+..|.+.|.+.+|+...+++++++|-+..
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~ 314 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQ 314 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhH
Confidence 344556666666666666666666665443
No 381
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.16 E-value=59 Score=24.05 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=16.7
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHc
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekALk 106 (338)
.|.-+-..|++.+|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444568899999998888764
No 382
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=37.88 E-value=51 Score=24.83 Aligned_cols=19 Identities=11% Similarity=-0.059 Sum_probs=12.9
Q ss_pred HHHCCCHHHHHHHHHHHHc
Q 019586 88 RVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 88 l~~lGr~~eAi~~yekALk 106 (338)
.-..|++++|+.+|..+++
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 16 EDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3344788888888777654
No 383
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=37.80 E-value=56 Score=20.11 Aligned_cols=29 Identities=14% Similarity=-0.144 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHC----CCHHHHHHHHHHHHcc
Q 019586 79 SEMMNKGGDRVEQ----SRLFDAFLGSSSIWQP 107 (338)
Q Consensus 79 ~a~~nLG~~l~~l----Gr~~eAi~~yekALkl 107 (338)
.+.+.||.+|..- .+..+|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4677888887642 3789999999888653
No 384
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=88 Score=33.86 Aligned_cols=75 Identities=15% Similarity=-0.037 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCC--cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAV--ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~--~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.++..+.++|-.++|++.-.--...+ +-.+|+++.|.+...+ .+...-|-.||.+.+..|++..|.+||.++.
T Consensus 619 ~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 619 KVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 78888888888888766532211111 1136777776654443 4567889999999999999999999999985
Q ss_pred cc
Q 019586 106 QP 107 (338)
Q Consensus 106 kl 107 (338)
.+
T Consensus 694 d~ 695 (794)
T KOG0276|consen 694 DL 695 (794)
T ss_pred ch
Confidence 44
No 385
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=35.95 E-value=1.1e+02 Score=26.48 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC--------HH--------HHHHHHHHHHcCCHHHHHHHHHh
Q 019586 1 MQQNNYIEAEDAYRRALSIAPDN--------NK--------MCNLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 1 mq~g~~eeAi~~y~kALeldPd~--------a~--------a~nLG~~y~~~G~~dEAi~~~~k 48 (338)
++.+++-.+|-+|++|+.+-.+- .+ -+||+..++.+|+-+-.++|++-
T Consensus 12 ~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLql 75 (140)
T PF10952_consen 12 FKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQL 75 (140)
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHH
Confidence 35678889999999999874221 11 12999999999999888888765
No 386
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.84 E-value=3.4e+02 Score=25.24 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH-
Q 019586 7 IEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE- 78 (338)
Q Consensus 7 eeAi~~y~kALeldPd~a~-------a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~- 78 (338)
...|.++.+|++....... .+.+|..|...|+|++|+.+|+.+ ...|+ ...|.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~--------------~~~yr-----~egW~~ 215 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPA--------------ASSYR-----REGWWS 215 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------HHHHH-----hCCcHH
Confidence 4556777777775432221 228899999999998888777663 11111 12222
Q ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 79 ---SEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 79 ---~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
..+..+-.|+...|+.++.+.+.-+
T Consensus 216 l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 216 LLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4455667788888888887775433
No 387
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.32 E-value=94 Score=31.02 Aligned_cols=37 Identities=8% Similarity=-0.233 Sum_probs=33.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
..++..|-+.+++..++.++..+|++..|.+..++||
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4457789999999999999999999999999888876
No 388
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=35.21 E-value=1.5e+02 Score=26.31 Aligned_cols=51 Identities=14% Similarity=-0.051 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
.|++++|+++|.++.+..-... +.++++-.+....|++.....+..++-.+
T Consensus 49 ~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 49 IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3677777777777666443322 44566666677777777777766665444
No 389
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.63 E-value=89 Score=34.48 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCCHHHH-HHHHHHHHcCCHHHHHHHHHh-hCcCCcC----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 21 PDNNKMC-NLGICLMKQGRIGEAKETLRR-VKPAVAD----GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~~p~~~d----~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
|++.... .+|.++.+.|--++|.++|-+ -.|.-+- .+++|.+|.+..++- ..|.-....-..+.-++..++.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~--~l~qv~tliak~aaqll~~~~~ 926 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF--QLPQVQTLIAKQAAQLLADANH 926 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHhhcch
Confidence 4444444 677777777777777777766 2232221 255666665554432 1144344444455667778888
Q ss_pred HHHHHHHHHH
Q 019586 95 FDAFLGSSSI 104 (338)
Q Consensus 95 ~eAi~~yekA 104 (338)
-+|++.++++
T Consensus 927 ~eaIe~~Rka 936 (1189)
T KOG2041|consen 927 MEAIEKDRKA 936 (1189)
T ss_pred HHHHHHhhhc
Confidence 8888888776
No 390
>PF13041 PPR_2: PPR repeat family
Probab=32.68 E-value=96 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 019586 28 NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k 48 (338)
.+=..|.+.|++++|.+.|++
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 555677788888777777766
No 391
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.58 E-value=3.4e+02 Score=27.42 Aligned_cols=91 Identities=8% Similarity=0.048 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHh----CCCCHHHH---HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC
Q 019586 3 QNNYIEAEDAYRRALSI----APDNNKMC---NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK 75 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel----dPd~a~a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P 75 (338)
.++.++|+++.++.++. +-.++..| ..|.++...|+..++.+.+ ++....+.....+.|
T Consensus 88 ~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~l--------------dd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 88 ISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLL--------------DDLKSMLDSLDGVTS 153 (380)
T ss_pred hccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHH--------------HHHHHHHhcccCCCh
Confidence 45778888888877763 22234444 8888888999998887776 445555556666666
Q ss_pred CCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHcc
Q 019586 76 DLESEMMNKGGD-RVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 76 d~~~a~~nLG~~-l~~lGr~~eAi~~yekALkl 107 (338)
+--..+|.++.- |...|++..+..+.-+.|..
T Consensus 154 ~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 154 NVHSSFYSLSSQYYKKIGDFASYYRHALLYLGC 186 (380)
T ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhcc
Confidence 555666777664 55667777666655555444
No 392
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.28 E-value=3.3e+02 Score=27.64 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CHH---HH-HHH--HHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPD--NNK---MC-NLG--ICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd--~a~---a~-nLG--~~y~~~G~~dEAi~~~~k 48 (338)
+.++|..|...|+.++...+. ... .+ .+. ..++-.-++++|..++++
T Consensus 142 n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 142 NAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 457899999999999987542 211 22 444 445667788999999986
No 393
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=1.7e+02 Score=31.03 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHH-HH---HHHHHH-HHcCCHHHHHHHHHh
Q 019586 5 NYIEAEDAYRRALSIAPDNNK-MC---NLGICL-MKQGRIGEAKETLRR 48 (338)
Q Consensus 5 ~~eeAi~~y~kALeldPd~a~-a~---nLG~~y-~~~G~~dEAi~~~~k 48 (338)
+...+|.+.+..+...|.+-. +. .+|.++ ....+++.|...+++
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLek 72 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEK 72 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344555555555555544433 11 444443 335556555555555
No 394
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.26 E-value=1e+02 Score=18.47 Aligned_cols=27 Identities=4% Similarity=-0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 80 EMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 80 a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|..+-.++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567778899999999999999987654
No 395
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.08 E-value=80 Score=24.54 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=15.2
Q ss_pred HHHCCCHHHHHHHHHHHHcc
Q 019586 88 RVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 88 l~~lGr~~eAi~~yekALkl 107 (338)
+=..|+|.+|+.+|..+++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 34568888888888888754
No 396
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=30.73 E-value=75 Score=24.60 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=13.5
Q ss_pred HHHHCCCHHHHHHHHHHHHc
Q 019586 87 DRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 87 ~l~~lGr~~eAi~~yekALk 106 (338)
-+=..|+|++|+.+|..+++
T Consensus 15 e~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 15 ELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 34456777777777777654
No 397
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.26 E-value=4.1e+02 Score=26.14 Aligned_cols=105 Identities=9% Similarity=-0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-HcCCHHHHHHHHHhhCcCCcC-------------CCCCHH-HHHHHHHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMC-NLGICLM-KQGRIGEAKETLRRVKPAVAD-------------GPRGVD-SHLKAYER 69 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~-~~G~~dEAi~~~~k~~p~~~d-------------~lg~~d-eAi~~yek 69 (338)
-..|..+-+.+|.++|-+...| -+=.|+. ...++.+-+.++..+..+++. .+|+.. .-+...++
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 3556666777777777777655 2222332 233455555566554444333 144444 44556666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586 70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC 110 (338)
Q Consensus 70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~ 110 (338)
++..+..+--+|...-.++...+.|+.-+.+....|+.+-.
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR 179 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Confidence 66666666666666666777777777777766666666554
No 398
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.69 E-value=79 Score=26.87 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
..+|..+...|++++|..||-+|+..-|+-..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 55899999999999999999999999887544
No 399
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.64 E-value=1.5e+02 Score=29.33 Aligned_cols=48 Identities=2% Similarity=-0.003 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 59 GVDSHLKAYERAQQMLKDLE----SEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~----~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
..++|+..|++.+++.+.-+ .++-.+-.+++.+|+|++-...|...|.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 77899999999999998755 4455667789999999998888876554
No 400
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=28.51 E-value=67 Score=32.76 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
.-+..|+.++++|.. .+.|+.|.+++.++..+|++
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 356788999999876 67888999998888888774
No 401
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=28.45 E-value=47 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHh
Q 019586 3 QNNYIEAEDAYRRALSI 19 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel 19 (338)
.|+|++|+.+|.+|++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 57899999999999985
No 402
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=28.19 E-value=1.4e+02 Score=29.27 Aligned_cols=45 Identities=9% Similarity=-0.300 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586 59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek 103 (338)
..-+|+..++.++...|.+......+..+|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 567889999999999999999999999999999999999999964
No 403
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=27.75 E-value=2.1e+02 Score=30.75 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=51.0
Q ss_pred HHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586 32 CLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF 98 (338)
Q Consensus 32 ~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi 98 (338)
++.++..++.+.+..+...|.... -.++.+.|-.+|++.+..+|+ ++++..+..+.+.|-..+|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 94 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQ 94 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHH
Confidence 345566677777777665443332 256889999999999999998 77778888888888888887
Q ss_pred HHHH
Q 019586 99 LGSS 102 (338)
Q Consensus 99 ~~ye 102 (338)
..++
T Consensus 95 ~~~~ 98 (578)
T PRK15490 95 LILK 98 (578)
T ss_pred HHHH
Confidence 7766
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.61 E-value=1.4e+02 Score=30.86 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhC-------CC-CHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQML-------KD-LESEMMN 83 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~-------Pd-~~~a~~n 83 (338)
.+|..|...|+++.|+..|-++.+-... .+++|..-..+-.+|.+.- +. .+...-.
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 8999999999999999999995554433 1455555444444444431 00 1123344
Q ss_pred HHHHHHHCCCHHHHHHHHHHHH
Q 019586 84 KGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 84 LG~~l~~lGr~~eAi~~yekAL 105 (338)
-|.+.+.+++|..|..+|-.+-
T Consensus 235 agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 5778888889999999987654
No 405
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.98 E-value=1.4e+02 Score=32.83 Aligned_cols=76 Identities=14% Similarity=0.019 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhCcCC-----cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586 28 NLGICLMKQGRIGEAKETLRRVKPAV-----ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 28 nLG~~y~~~G~~dEAi~~~~k~~p~~-----~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye 102 (338)
.++.-+.+...+.-|.+.|.++...- .-..++|++|....++--++ .++.|+-.|..+.+..+|.||.++|.
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHH
Confidence 55555666777777777777743321 11367889888777664333 23678889999999999999999998
Q ss_pred HHHc
Q 019586 103 SIWQ 106 (338)
Q Consensus 103 kALk 106 (338)
+|=+
T Consensus 829 kAGr 832 (1081)
T KOG1538|consen 829 KAGR 832 (1081)
T ss_pred Hhcc
Confidence 8643
No 406
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.70 E-value=65 Score=32.24 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcCCHHHHHHHHHh---hCcCCcC
Q 019586 4 NNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKETLRR---VKPAVAD 55 (338)
Q Consensus 4 g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G~~dEAi~~~~k---~~p~~~d 55 (338)
|-|.+--..|.+++...|.+.+.| --+.-|...++++.+.+.|.+ .++..|.
T Consensus 121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~ 177 (435)
T COG5191 121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR 177 (435)
T ss_pred HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence 345666678889999999999977 455667788999999999999 4455544
No 407
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=26.56 E-value=1.6e+02 Score=25.62 Aligned_cols=37 Identities=8% Similarity=-0.154 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~ 94 (338)
|++.-|+.....++..+|++..+..-++.+|..+|.-
T Consensus 84 gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 84 GDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp T-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5566667777777777777777776666666665543
No 408
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=26.54 E-value=3.5e+02 Score=29.07 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCC-------------CCCHHHHHHHHHHHHHhCCCCHHH
Q 019586 14 RRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADG-------------PRGVDSHLKAYERAQQMLKDLESE 80 (338)
Q Consensus 14 ~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-------------lg~~deAi~~yekAL~l~Pd~~~a 80 (338)
++-|+.+|.+.+.|+.=.-+....-+++....|++....+|.. -.+++.-.+.|.+||.--=+ .+.
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhH
Confidence 6778999999998844444444448999999999965555442 45777778888888764333 233
Q ss_pred H-HHHHHHHHHCCCHHHHHHH
Q 019586 81 M-MNKGGDRVEQSRLFDAFLG 100 (338)
Q Consensus 81 ~-~nLG~~l~~lGr~~eAi~~ 100 (338)
| ..|..+....|+...+...
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~ 109 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREK 109 (656)
T ss_pred HHHHHHHHHHHccCcchHHHH
Confidence 3 4466677777777664443
No 409
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=26.09 E-value=6.8e+02 Score=26.54 Aligned_cols=100 Identities=11% Similarity=0.031 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHH-----HHHHHHHHHHcCCHHHHHHHHHhhCcCCc------C-------------CC
Q 019586 4 NNYIEAEDAYRRALSIA--PDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVA------D-------------GP 57 (338)
Q Consensus 4 g~~eeAi~~y~kALeld--Pd~a~-----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~------d-------------~l 57 (338)
.++++|+.+++|++.+. ++..+ .+-++.+|.+.+... |....++...... + ..
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~ 152 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH 152 (608)
T ss_pred CCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence 46788888888888875 34433 116677777777665 7777666221111 1 02
Q ss_pred CCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHHHHHCCCHHHHHHHHHHH
Q 019586 58 RGVDSHLKAYERAQQML--KDLESEM----MNKGGDRVEQSRLFDAFLGSSSI 104 (338)
Q Consensus 58 g~~deAi~~yekAL~l~--Pd~~~a~----~nLG~~l~~lGr~~eAi~~yekA 104 (338)
+++..|+..++....+. ..++.+. ...|.++...+..++++...+++
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 46666666666655554 2222221 22344555555555555555444
No 410
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.41 E-value=97 Score=34.11 Aligned_cols=57 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+++|..++...+-|+...|....+++..+.+|...++++-|++...-.....|.+..
T Consensus 106 l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 106 LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 567788888889999999999999999999999999999999998888899998843
No 411
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.24 E-value=74 Score=32.53 Aligned_cols=73 Identities=8% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHcCCHHHHHHHHHhhCc-----C--CcCC-------CC
Q 019586 3 QNNYIEAEDAYRRALSIAPDN----------NKMCNLGICLMKQGRIGEAKETLRRVKP-----A--VADG-------PR 58 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~----------a~a~nLG~~y~~~G~~dEAi~~~~k~~p-----~--~~d~-------lg 58 (338)
.|+|..|++..+- |.++... ...|.+|.+|+.++||.+|+..|..+.- . +... ..
T Consensus 135 LGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K 213 (404)
T PF10255_consen 135 LGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINK 213 (404)
T ss_pred ccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHh
Confidence 5888888877553 2333221 1144999999999999999999988211 1 1111 23
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 019586 59 GVDSHLKAYERAQQMLKD 76 (338)
Q Consensus 59 ~~deAi~~yekAL~l~Pd 76 (338)
..++....+-=|+.+.|.
T Consensus 214 ~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 214 KNEQMYALLAICLSLCPQ 231 (404)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 455555555556666664
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.06 E-value=3.7e+02 Score=27.07 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH-HHH
Q 019586 6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM-MNK 84 (338)
Q Consensus 6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~-~nL 84 (338)
.++||.+..+|+..+ ..++|++|..+|+ .|+++|..+|+...+...+- .-.
T Consensus 7 l~kaI~lv~kA~~eD--------------~a~nY~eA~~lY~--------------~aleYF~~~lKYE~~~~kaKd~Ir 58 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED--------------NAKNYEEALRLYQ--------------NALEYFLHALKYEANNKKAKDSIR 58 (439)
T ss_pred HHHHHHHHHHHhhhc--------------chhchHHHHHHHH--------------HHHHHHHHHHHhhhcChhHHHHHH
Confidence 466777777776654 4577888888884 48888888888876665443 223
Q ss_pred HHHHHHCCCHHHHHHHHH
Q 019586 85 GGDRVEQSRLFDAFLGSS 102 (338)
Q Consensus 85 G~~l~~lGr~~eAi~~ye 102 (338)
+.+...+.|-++-..+++
T Consensus 59 aK~~EYLdRAEkLK~yL~ 76 (439)
T KOG0739|consen 59 AKFTEYLDRAEKLKAYLK 76 (439)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445444444444444443
No 413
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.90 E-value=2.4e+02 Score=28.53 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHh--CCCCHH---------HHHHHHHHHHcCCHHHHHHHHHhhCcCCc-----------------
Q 019586 3 QNNYIEAEDAYRRALSI--APDNNK---------MCNLGICLMKQGRIGEAKETLRRVKPAVA----------------- 54 (338)
Q Consensus 3 ~g~~eeAi~~y~kALel--dPd~a~---------a~nLG~~y~~~G~~dEAi~~~~k~~p~~~----------------- 54 (338)
.+++++++..|.+.+.. .|...+ ..++|..|.+.|++++=........|-..
T Consensus 17 ~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~ 96 (411)
T KOG1463|consen 17 VNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDM 96 (411)
T ss_pred cchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 35678999999998884 222222 22999999999999877776666333221
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 55 --DGPRGVDSHLKAYERAQQMLKDLESE------MMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 55 --d~lg~~deAi~~yekAL~l~Pd~~~a------~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.....++.-+..+..+|+--...-.. --.|...|++.++|.+|+......+
T Consensus 97 ~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 97 FLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred HccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12334455566666666633222211 2457889999999999998765433
No 414
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=24.70 E-value=1.4e+02 Score=22.43 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=14.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHc
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALk 106 (338)
..+-..|++++|+.+|..+++
T Consensus 16 v~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 16 LKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334447888888888877654
No 415
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.34 E-value=4e+02 Score=21.82 Aligned_cols=28 Identities=0% Similarity=-0.002 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019586 58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE 90 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~ 90 (338)
++++.|++++.+ ...++.|..++..+..
T Consensus 110 ~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 110 GNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred cCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 556666666665 3466677776665543
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.04 E-value=3.6e+02 Score=27.05 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH--HHH--HHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586 58 RGVDSHLKAYERAQQMLKDLES--EMM--NKGGDRVEQSRLFDAFLGSSSIWQP 107 (338)
Q Consensus 58 g~~deAi~~yekAL~l~Pd~~~--a~~--nLG~~l~~lGr~~eAi~~yekALkl 107 (338)
++|..|...|+..++--|.... .+. ..|..+...-++.+|..+++..+..
T Consensus 145 ~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 145 YDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred CCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888777774343333 333 3466777899999999999988765
No 417
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.64 E-value=1.2e+02 Score=23.79 Aligned_cols=19 Identities=11% Similarity=-0.198 Sum_probs=13.0
Q ss_pred HHHCCCHHHHHHHHHHHHc
Q 019586 88 RVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 88 l~~lGr~~eAi~~yekALk 106 (338)
+-+.|..++|+.+|++++.
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhcCCHHHHHHHHHHHHH
Confidence 3345777778777777764
No 418
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.30 E-value=86 Score=32.34 Aligned_cols=56 Identities=11% Similarity=-0.055 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 58 RGVDSHLKAYERAQQ----MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 58 g~~deAi~~yekAL~----l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
+.|+.|.....++.- .+-+++..++.+|.+..-+++|..|..++-.|+...|++..
T Consensus 223 ~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 223 KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 366666665555531 11245677788999999999999999999999999998544
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=23.17 E-value=6.3e+02 Score=24.27 Aligned_cols=47 Identities=19% Similarity=0.088 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586 2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR 48 (338)
Q Consensus 2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k 48 (338)
+.+...+|+...+.-++.+|.+.... .|=..|.-.|+|++|...++-
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 35678899999999999999888844 777788899999999888776
No 420
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=22.74 E-value=7.6e+02 Score=26.60 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHhC-CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586 4 NNYIEAEDAYRRALSIA-PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE 68 (338)
Q Consensus 4 g~~eeAi~~y~kALeld-Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye 68 (338)
|+..-|-..+.++.++. |+.+..+ .-+.+--..|+++.|...++++....+. ..|..+.+-...+
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~ 424 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNE 424 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHH
Confidence 55666666777777764 4444444 5555556678888888888885544433 1556665553222
Q ss_pred HHHHhCCC--C----HHHHHHHHH-HHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586 69 RAQQMLKD--L----ESEMMNKGG-DRVEQSRLFDAFLGSSSIWQPQPCKDH 113 (338)
Q Consensus 69 kAL~l~Pd--~----~~a~~nLG~-~l~~lGr~~eAi~~yekALkl~P~~~~ 113 (338)
.-....+. + +..+...+. .+.-.++.+.|...+..++.+.|.+..
T Consensus 425 l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 425 LYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred HHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 11112222 1 122333443 355667788888889999999988776
No 421
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.32 E-value=3.6e+02 Score=22.55 Aligned_cols=44 Identities=5% Similarity=-0.269 Sum_probs=35.6
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586 62 SHLKAYERAQQ--MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW 105 (338)
Q Consensus 62 eAi~~yekAL~--l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL 105 (338)
.+...|..+.. +--..+..|...|..+...|++.+|...|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 66677765554 557788999999999999999999999999875
No 422
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.16 E-value=5.6e+02 Score=22.74 Aligned_cols=50 Identities=8% Similarity=-0.114 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586 57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk 106 (338)
.|+-++--+.+....+-....++.++.+|.+|.+.|...+|-..+.+|-+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45556656666666554556789999999999999999999998887743
No 423
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=22.06 E-value=2.9e+02 Score=22.68 Aligned_cols=87 Identities=16% Similarity=0.024 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM 81 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~ 81 (338)
.+.....+.+++..+..++.+...+ .+..+|.+. +-.+.+..++.- ...-+.+.|+..+++. + .|
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~-----~~~yd~~~~~~~c~~~---~-----l~ 85 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNK-----SNHYDIEKVGKLCEKA---K-----LY 85 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhc-----cccCCHHHHHHHHHHc---C-----cH
Confidence 4678889999999999887666666 666666655 445666666631 1123445555544431 1 12
Q ss_pred HHHHHHHHHCCCHHHHHHHHHH
Q 019586 82 MNKGGDRVEQSRLFDAFLGSSS 103 (338)
Q Consensus 82 ~nLG~~l~~lGr~~eAi~~yek 103 (338)
.....+|.+.|.+.+|+..+-.
T Consensus 86 ~~~~~l~~k~~~~~~Al~~~l~ 107 (140)
T smart00299 86 EEAVELYKKDGNFKDAIVTLIE 107 (140)
T ss_pred HHHHHHHHhhcCHHHHHHHHHH
Confidence 2334456666777777766543
No 424
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=4.2e+02 Score=26.97 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCHH--HH--HHHHHHHHcCCHHHHHHHHHhhCcCCc----------CCCCCHHHHHHHHHHHHHhC
Q 019586 9 AEDAYRRALSIAPDNNK--MC--NLGICLMKQGRIGEAKETLRRVKPAVA----------DGPRGVDSHLKAYERAQQML 74 (338)
Q Consensus 9 Ai~~y~kALeldPd~a~--a~--nLG~~y~~~G~~dEAi~~~~k~~p~~~----------d~lg~~deAi~~yekAL~l~ 74 (338)
+-..|+++.+.-|++-. ++ +-|.++...|+|.++...+..+...+. .+.+ +--+...=.-..+.+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~-~vGst~vNDNi~~Y~ 118 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAG-YVGATMINDNVRAYG 118 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheecccccc-chhhhhhccchhhcC
Confidence 44678888888777655 33 889999999998877666644211110 0000 000000000111122
Q ss_pred CCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586 75 KDL---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ 108 (338)
Q Consensus 75 Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~ 108 (338)
|.. .-.++.+|.-|+...+++.|+--|.++.+.+
T Consensus 119 g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 119 GNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred chhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 221 2345668888999999999998888887654
No 425
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.39 E-value=4e+02 Score=33.35 Aligned_cols=106 Identities=16% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC-cCCcC----------C--------------
Q 019586 3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK-PAVAD----------G-------------- 56 (338)
Q Consensus 3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~-p~~~d----------~-------------- 56 (338)
.|+++.|-.+.-.|.+.. -+.++ ..|-.+..+|+-..|+..+++.. -.+++ .
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 467777777777777766 34455 88888888888888888888822 22222 0
Q ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HCCCHHH---HHHHHHHHHccCCC
Q 019586 57 -------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV------------EQSRLFD---AFLGSSSIWQPQPC 110 (338)
Q Consensus 57 -------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~------------~lGr~~e---Ai~~yekALkl~P~ 110 (338)
.-....-+++|..+.++.|.+...|+.+|.-|- ..|++.. |+..|.+++...-+
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 113344578888999999988888888883222 4456555 56666677665544
No 426
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=20.11 E-value=1.7e+02 Score=22.12 Aligned_cols=21 Identities=5% Similarity=-0.124 Sum_probs=13.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHc
Q 019586 86 GDRVEQSRLFDAFLGSSSIWQ 106 (338)
Q Consensus 86 ~~l~~lGr~~eAi~~yekALk 106 (338)
.-.-..|++++|+.+|..+++
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 334456777777777777654
Done!